Multiple sequence alignment - TraesCS7D01G390500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G390500 chr7D 100.000 1750 0 0 1 1750 505909713 505907964 0.000000e+00 3232.0
1 TraesCS7D01G390500 chr7D 95.945 1751 69 2 1 1750 460639780 460638031 0.000000e+00 2839.0
2 TraesCS7D01G390500 chr7D 95.662 1752 69 7 1 1750 160690937 160689191 0.000000e+00 2808.0
3 TraesCS7D01G390500 chr7D 95.491 1752 73 6 1 1750 160666478 160664731 0.000000e+00 2793.0
4 TraesCS7D01G390500 chr7D 95.426 1749 75 5 1 1749 536395135 536396878 0.000000e+00 2782.0
5 TraesCS7D01G390500 chr7D 100.000 420 0 0 2056 2475 505907658 505907239 0.000000e+00 776.0
6 TraesCS7D01G390500 chr7D 93.103 377 24 2 2100 2475 310862078 310861703 3.600000e-153 551.0
7 TraesCS7D01G390500 chr7D 96.154 130 5 0 2056 2185 536396869 536396998 1.930000e-51 213.0
8 TraesCS7D01G390500 chr7D 96.748 123 4 0 2056 2178 602796394 602796516 3.230000e-49 206.0
9 TraesCS7D01G390500 chr2D 95.893 1753 64 7 1 1750 60191050 60189303 0.000000e+00 2832.0
10 TraesCS7D01G390500 chr2D 95.779 1753 66 8 1 1750 349010865 349009118 0.000000e+00 2820.0
11 TraesCS7D01G390500 chr2D 95.662 1752 69 6 1 1750 648148570 648150316 0.000000e+00 2808.0
12 TraesCS7D01G390500 chr2D 91.076 381 30 4 2096 2475 263423930 263424307 1.700000e-141 512.0
13 TraesCS7D01G390500 chr6D 95.717 1751 73 2 2 1750 11364955 11366705 0.000000e+00 2817.0
14 TraesCS7D01G390500 chr6D 98.000 300 5 1 2177 2475 78976059 78975760 1.010000e-143 520.0
15 TraesCS7D01G390500 chr6D 98.000 300 4 2 2177 2475 386489396 386489694 1.010000e-143 520.0
16 TraesCS7D01G390500 chr6D 95.161 62 1 2 1689 1750 413390954 413391013 2.030000e-16 97.1
17 TraesCS7D01G390500 chr6D 93.651 63 2 2 1689 1750 31860919 31860980 2.620000e-15 93.5
18 TraesCS7D01G390500 chr6D 93.651 63 2 2 1689 1750 97920460 97920521 2.620000e-15 93.5
19 TraesCS7D01G390500 chr6D 93.651 63 2 2 1689 1750 134143456 134143395 2.620000e-15 93.5
20 TraesCS7D01G390500 chr6D 93.548 62 2 2 1689 1750 359437308 359437249 9.430000e-15 91.6
21 TraesCS7D01G390500 chr6D 91.935 62 3 2 1689 1750 441813190 441813131 4.390000e-13 86.1
22 TraesCS7D01G390500 chr5D 95.665 1753 68 5 1 1750 432505715 432507462 0.000000e+00 2809.0
23 TraesCS7D01G390500 chr1A 89.336 1716 137 19 38 1750 384323592 384321920 0.000000e+00 2113.0
24 TraesCS7D01G390500 chr1A 95.767 189 7 1 1556 1744 331313420 331313607 1.110000e-78 303.0
25 TraesCS7D01G390500 chr3D 95.873 315 10 3 2163 2475 123637448 123637135 7.900000e-140 507.0
26 TraesCS7D01G390500 chr3D 89.311 421 22 2 2056 2475 365507037 365506639 7.900000e-140 507.0
27 TraesCS7D01G390500 chr1D 93.312 314 20 1 2163 2475 246044858 246045171 1.730000e-126 462.0
28 TraesCS7D01G390500 chr1D 88.136 295 19 7 1457 1750 495408132 495407853 1.100000e-88 337.0
29 TraesCS7D01G390500 chr1B 90.991 333 26 4 2056 2386 339189329 339188999 1.750000e-121 446.0
30 TraesCS7D01G390500 chr1B 87.805 328 35 5 2067 2391 454831860 454832185 1.800000e-101 379.0
31 TraesCS7D01G390500 chr6A 90.785 293 25 2 2144 2434 212283644 212283352 8.300000e-105 390.0
32 TraesCS7D01G390500 chr6A 94.819 193 9 1 1556 1747 371241537 371241729 1.440000e-77 300.0
33 TraesCS7D01G390500 chr6A 92.771 166 12 0 1566 1731 390081646 390081481 8.840000e-60 241.0
34 TraesCS7D01G390500 chr2B 87.676 284 33 2 2099 2381 87472043 87471761 1.830000e-86 329.0
35 TraesCS7D01G390500 chr4D 92.040 201 15 1 1551 1750 430883724 430883524 5.210000e-72 281.0
36 TraesCS7D01G390500 chr4D 91.667 72 5 1 1678 1749 214097528 214097598 5.630000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G390500 chr7D 505907239 505909713 2474 True 2004.0 3232 100.000 1 2475 2 chr7D.!!$R5 2474
1 TraesCS7D01G390500 chr7D 460638031 460639780 1749 True 2839.0 2839 95.945 1 1750 1 chr7D.!!$R4 1749
2 TraesCS7D01G390500 chr7D 160689191 160690937 1746 True 2808.0 2808 95.662 1 1750 1 chr7D.!!$R2 1749
3 TraesCS7D01G390500 chr7D 160664731 160666478 1747 True 2793.0 2793 95.491 1 1750 1 chr7D.!!$R1 1749
4 TraesCS7D01G390500 chr7D 536395135 536396998 1863 False 1497.5 2782 95.790 1 2185 2 chr7D.!!$F2 2184
5 TraesCS7D01G390500 chr2D 60189303 60191050 1747 True 2832.0 2832 95.893 1 1750 1 chr2D.!!$R1 1749
6 TraesCS7D01G390500 chr2D 349009118 349010865 1747 True 2820.0 2820 95.779 1 1750 1 chr2D.!!$R2 1749
7 TraesCS7D01G390500 chr2D 648148570 648150316 1746 False 2808.0 2808 95.662 1 1750 1 chr2D.!!$F2 1749
8 TraesCS7D01G390500 chr6D 11364955 11366705 1750 False 2817.0 2817 95.717 2 1750 1 chr6D.!!$F1 1748
9 TraesCS7D01G390500 chr5D 432505715 432507462 1747 False 2809.0 2809 95.665 1 1750 1 chr5D.!!$F1 1749
10 TraesCS7D01G390500 chr1A 384321920 384323592 1672 True 2113.0 2113 89.336 38 1750 1 chr1A.!!$R1 1712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 96 0.382158 CACCTCGCTAGCATCGAAGA 59.618 55.0 16.45 1.34 45.75 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 2132 0.167251 CGCGGTTTATTTTCGCTGGT 59.833 50.0 0.0 0.0 46.23 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.003173 CTCCTGTTCCCCGAGCCA 61.003 66.667 0.00 0.00 0.00 4.75
95 96 0.382158 CACCTCGCTAGCATCGAAGA 59.618 55.000 16.45 1.34 45.75 2.87
242 245 2.528127 ACCACCATGACCGACCCA 60.528 61.111 0.00 0.00 0.00 4.51
321 324 3.598562 CGCTACTTCGTCTGCGCG 61.599 66.667 0.00 0.00 41.85 6.86
515 518 5.107220 CGTTTGCTCTTGTTAGGTATTTCGT 60.107 40.000 0.00 0.00 0.00 3.85
618 622 2.203252 CTATGCACGCCCATGCCT 60.203 61.111 0.00 0.00 45.50 4.75
863 870 4.914420 CTCGCGCCGCCTCTAGTG 62.914 72.222 2.28 0.00 0.00 2.74
969 976 0.737219 GTTGCTTCCTGCTGCTATGG 59.263 55.000 0.00 0.80 43.37 2.74
1637 1650 9.693739 TTGCATAATTTAAGGAAGTTAGATCCA 57.306 29.630 0.00 0.00 39.55 3.41
2081 2154 2.920640 GCGAAAATAAACCGCGGAC 58.079 52.632 35.90 10.71 39.54 4.79
2082 2155 0.521867 GCGAAAATAAACCGCGGACC 60.522 55.000 35.90 9.71 39.54 4.46
2083 2156 0.797542 CGAAAATAAACCGCGGACCA 59.202 50.000 35.90 16.27 0.00 4.02
2084 2157 1.201987 CGAAAATAAACCGCGGACCAG 60.202 52.381 35.90 4.58 0.00 4.00
2085 2158 1.131693 GAAAATAAACCGCGGACCAGG 59.868 52.381 35.90 3.66 0.00 4.45
2086 2159 0.678684 AAATAAACCGCGGACCAGGG 60.679 55.000 35.90 2.75 0.00 4.45
2087 2160 1.844544 AATAAACCGCGGACCAGGGT 61.845 55.000 35.90 3.57 34.99 4.34
2088 2161 2.530958 ATAAACCGCGGACCAGGGTG 62.531 60.000 35.90 0.93 33.47 4.61
2107 2180 4.348495 GAGGGGGTGGTGGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
2108 2181 4.354943 AGGGGGTGGTGGGAGGAG 62.355 72.222 0.00 0.00 0.00 3.69
2109 2182 4.348495 GGGGGTGGTGGGAGGAGA 62.348 72.222 0.00 0.00 0.00 3.71
2110 2183 2.689034 GGGGTGGTGGGAGGAGAG 60.689 72.222 0.00 0.00 0.00 3.20
2111 2184 2.450243 GGGTGGTGGGAGGAGAGA 59.550 66.667 0.00 0.00 0.00 3.10
2112 2185 1.990614 GGGTGGTGGGAGGAGAGAC 60.991 68.421 0.00 0.00 0.00 3.36
2113 2186 2.352032 GGTGGTGGGAGGAGAGACG 61.352 68.421 0.00 0.00 0.00 4.18
2114 2187 1.304217 GTGGTGGGAGGAGAGACGA 60.304 63.158 0.00 0.00 0.00 4.20
2115 2188 0.898789 GTGGTGGGAGGAGAGACGAA 60.899 60.000 0.00 0.00 0.00 3.85
2116 2189 0.178944 TGGTGGGAGGAGAGACGAAA 60.179 55.000 0.00 0.00 0.00 3.46
2117 2190 0.974383 GGTGGGAGGAGAGACGAAAA 59.026 55.000 0.00 0.00 0.00 2.29
2118 2191 1.346722 GGTGGGAGGAGAGACGAAAAA 59.653 52.381 0.00 0.00 0.00 1.94
2153 2226 3.963428 AAACCGCAGAGACTATTCACT 57.037 42.857 0.00 0.00 0.00 3.41
2179 2252 6.007936 CTCGTCCATTAGGAGTAGAGATTG 57.992 45.833 0.00 0.00 46.92 2.67
2185 2258 7.069578 GTCCATTAGGAGTAGAGATTGGTGTTA 59.930 40.741 0.00 0.00 46.92 2.41
2186 2259 7.622081 TCCATTAGGAGTAGAGATTGGTGTTAA 59.378 37.037 0.00 0.00 39.61 2.01
2187 2260 8.265055 CCATTAGGAGTAGAGATTGGTGTTAAA 58.735 37.037 0.00 0.00 36.89 1.52
2188 2261 9.099454 CATTAGGAGTAGAGATTGGTGTTAAAC 57.901 37.037 0.00 0.00 0.00 2.01
2203 2276 7.137490 GGTGTTAAACCTACTGTATTCCAAC 57.863 40.000 0.00 0.00 46.55 3.77
2204 2277 6.938596 GGTGTTAAACCTACTGTATTCCAACT 59.061 38.462 0.00 0.00 46.55 3.16
2205 2278 7.446319 GGTGTTAAACCTACTGTATTCCAACTT 59.554 37.037 0.00 0.00 46.55 2.66
2206 2279 8.843262 GTGTTAAACCTACTGTATTCCAACTTT 58.157 33.333 0.00 0.00 0.00 2.66
2207 2280 9.411189 TGTTAAACCTACTGTATTCCAACTTTT 57.589 29.630 0.00 0.00 0.00 2.27
2208 2281 9.888878 GTTAAACCTACTGTATTCCAACTTTTC 57.111 33.333 0.00 0.00 0.00 2.29
2209 2282 9.856162 TTAAACCTACTGTATTCCAACTTTTCT 57.144 29.630 0.00 0.00 0.00 2.52
2212 2285 9.449719 AACCTACTGTATTCCAACTTTTCTATG 57.550 33.333 0.00 0.00 0.00 2.23
2213 2286 8.047310 ACCTACTGTATTCCAACTTTTCTATGG 58.953 37.037 0.00 0.00 35.49 2.74
2214 2287 8.047310 CCTACTGTATTCCAACTTTTCTATGGT 58.953 37.037 0.00 0.00 35.66 3.55
2215 2288 9.449719 CTACTGTATTCCAACTTTTCTATGGTT 57.550 33.333 0.00 0.00 35.66 3.67
2216 2289 8.706322 ACTGTATTCCAACTTTTCTATGGTTT 57.294 30.769 0.00 0.00 35.66 3.27
2217 2290 9.802039 ACTGTATTCCAACTTTTCTATGGTTTA 57.198 29.630 0.00 0.00 35.66 2.01
2236 2309 9.969001 ATGGTTTATAAACTCTTTTACTAGCCA 57.031 29.630 23.89 11.67 38.89 4.75
2237 2310 9.969001 TGGTTTATAAACTCTTTTACTAGCCAT 57.031 29.630 23.89 0.00 38.89 4.40
2246 2319 9.771534 AACTCTTTTACTAGCCATAGATTCATC 57.228 33.333 0.00 0.00 32.93 2.92
2247 2320 8.928448 ACTCTTTTACTAGCCATAGATTCATCA 58.072 33.333 0.00 0.00 32.93 3.07
2248 2321 9.770097 CTCTTTTACTAGCCATAGATTCATCAA 57.230 33.333 0.00 0.00 32.93 2.57
2255 2328 9.007901 ACTAGCCATAGATTCATCAAAATAAGC 57.992 33.333 0.00 0.00 32.93 3.09
2256 2329 7.828508 AGCCATAGATTCATCAAAATAAGCA 57.171 32.000 0.00 0.00 0.00 3.91
2257 2330 8.241497 AGCCATAGATTCATCAAAATAAGCAA 57.759 30.769 0.00 0.00 0.00 3.91
2258 2331 8.698210 AGCCATAGATTCATCAAAATAAGCAAA 58.302 29.630 0.00 0.00 0.00 3.68
2259 2332 8.758715 GCCATAGATTCATCAAAATAAGCAAAC 58.241 33.333 0.00 0.00 0.00 2.93
2260 2333 9.806203 CCATAGATTCATCAAAATAAGCAAACA 57.194 29.630 0.00 0.00 0.00 2.83
2264 2337 8.981647 AGATTCATCAAAATAAGCAAACAACAC 58.018 29.630 0.00 0.00 0.00 3.32
2265 2338 8.659925 ATTCATCAAAATAAGCAAACAACACA 57.340 26.923 0.00 0.00 0.00 3.72
2266 2339 7.462109 TCATCAAAATAAGCAAACAACACAC 57.538 32.000 0.00 0.00 0.00 3.82
2267 2340 5.940603 TCAAAATAAGCAAACAACACACG 57.059 34.783 0.00 0.00 0.00 4.49
2268 2341 5.641709 TCAAAATAAGCAAACAACACACGA 58.358 33.333 0.00 0.00 0.00 4.35
2269 2342 6.093404 TCAAAATAAGCAAACAACACACGAA 58.907 32.000 0.00 0.00 0.00 3.85
2270 2343 6.586463 TCAAAATAAGCAAACAACACACGAAA 59.414 30.769 0.00 0.00 0.00 3.46
2271 2344 6.952935 AAATAAGCAAACAACACACGAAAA 57.047 29.167 0.00 0.00 0.00 2.29
2272 2345 6.952935 AATAAGCAAACAACACACGAAAAA 57.047 29.167 0.00 0.00 0.00 1.94
2273 2346 4.639189 AAGCAAACAACACACGAAAAAC 57.361 36.364 0.00 0.00 0.00 2.43
2274 2347 3.643763 AGCAAACAACACACGAAAAACA 58.356 36.364 0.00 0.00 0.00 2.83
2275 2348 3.672867 AGCAAACAACACACGAAAAACAG 59.327 39.130 0.00 0.00 0.00 3.16
2276 2349 3.670991 GCAAACAACACACGAAAAACAGA 59.329 39.130 0.00 0.00 0.00 3.41
2277 2350 4.149046 GCAAACAACACACGAAAAACAGAA 59.851 37.500 0.00 0.00 0.00 3.02
2278 2351 5.164002 GCAAACAACACACGAAAAACAGAAT 60.164 36.000 0.00 0.00 0.00 2.40
2279 2352 6.457676 CAAACAACACACGAAAAACAGAATC 58.542 36.000 0.00 0.00 0.00 2.52
2280 2353 5.560966 ACAACACACGAAAAACAGAATCT 57.439 34.783 0.00 0.00 0.00 2.40
2281 2354 5.331902 ACAACACACGAAAAACAGAATCTG 58.668 37.500 8.98 8.98 37.52 2.90
2283 2356 5.156804 ACACACGAAAAACAGAATCTGTC 57.843 39.130 17.02 3.07 44.62 3.51
2284 2357 4.634004 ACACACGAAAAACAGAATCTGTCA 59.366 37.500 17.02 0.00 44.62 3.58
2285 2358 5.123186 ACACACGAAAAACAGAATCTGTCAA 59.877 36.000 17.02 0.00 44.62 3.18
2286 2359 6.027131 CACACGAAAAACAGAATCTGTCAAA 58.973 36.000 17.02 0.00 44.62 2.69
2287 2360 6.526325 CACACGAAAAACAGAATCTGTCAAAA 59.474 34.615 17.02 0.00 44.62 2.44
2288 2361 6.526674 ACACGAAAAACAGAATCTGTCAAAAC 59.473 34.615 17.02 6.87 44.62 2.43
2289 2362 6.526325 CACGAAAAACAGAATCTGTCAAAACA 59.474 34.615 17.02 0.00 44.62 2.83
2313 2386 8.676454 CAGAACAGTCTGTAGTAATCTGTAAC 57.324 38.462 17.89 0.00 45.44 2.50
2314 2387 8.516234 CAGAACAGTCTGTAGTAATCTGTAACT 58.484 37.037 17.89 0.00 45.44 2.24
2315 2388 9.736414 AGAACAGTCTGTAGTAATCTGTAACTA 57.264 33.333 5.77 0.00 38.21 2.24
2318 2391 8.449397 ACAGTCTGTAGTAATCTGTAACTAACG 58.551 37.037 2.87 0.00 37.55 3.18
2319 2392 7.428761 CAGTCTGTAGTAATCTGTAACTAACGC 59.571 40.741 0.00 0.00 30.32 4.84
2320 2393 7.120285 AGTCTGTAGTAATCTGTAACTAACGCA 59.880 37.037 0.00 0.00 30.32 5.24
2321 2394 7.752239 GTCTGTAGTAATCTGTAACTAACGCAA 59.248 37.037 0.00 0.00 30.32 4.85
2322 2395 8.298854 TCTGTAGTAATCTGTAACTAACGCAAA 58.701 33.333 0.00 0.00 30.32 3.68
2323 2396 8.231304 TGTAGTAATCTGTAACTAACGCAAAC 57.769 34.615 0.00 0.00 30.32 2.93
2324 2397 8.084073 TGTAGTAATCTGTAACTAACGCAAACT 58.916 33.333 0.00 0.00 30.32 2.66
2325 2398 7.958053 AGTAATCTGTAACTAACGCAAACTT 57.042 32.000 0.00 0.00 0.00 2.66
2326 2399 8.015409 AGTAATCTGTAACTAACGCAAACTTC 57.985 34.615 0.00 0.00 0.00 3.01
2327 2400 7.871463 AGTAATCTGTAACTAACGCAAACTTCT 59.129 33.333 0.00 0.00 0.00 2.85
2328 2401 5.900339 TCTGTAACTAACGCAAACTTCTG 57.100 39.130 0.00 0.00 0.00 3.02
2329 2402 5.593968 TCTGTAACTAACGCAAACTTCTGA 58.406 37.500 0.00 0.00 0.00 3.27
2330 2403 6.044046 TCTGTAACTAACGCAAACTTCTGAA 58.956 36.000 0.00 0.00 0.00 3.02
2331 2404 6.535865 TCTGTAACTAACGCAAACTTCTGAAA 59.464 34.615 0.00 0.00 0.00 2.69
2332 2405 6.480285 TGTAACTAACGCAAACTTCTGAAAC 58.520 36.000 0.00 0.00 0.00 2.78
2333 2406 5.813080 AACTAACGCAAACTTCTGAAACT 57.187 34.783 0.00 0.00 0.00 2.66
2334 2407 5.405331 ACTAACGCAAACTTCTGAAACTC 57.595 39.130 0.00 0.00 0.00 3.01
2335 2408 4.873827 ACTAACGCAAACTTCTGAAACTCA 59.126 37.500 0.00 0.00 0.00 3.41
2336 2409 3.951979 ACGCAAACTTCTGAAACTCAG 57.048 42.857 0.00 0.00 45.59 3.35
2356 2429 9.807921 AACTCAGAAAAATCTACCAAAATAGGA 57.192 29.630 0.00 0.00 0.00 2.94
2357 2430 9.807921 ACTCAGAAAAATCTACCAAAATAGGAA 57.192 29.630 0.00 0.00 0.00 3.36
2361 2434 9.244292 AGAAAAATCTACCAAAATAGGAAGACC 57.756 33.333 0.00 0.00 0.00 3.85
2394 2467 8.984891 TTTGTTTATTGATCTACTGCAATTGG 57.015 30.769 7.72 0.00 36.27 3.16
2395 2468 7.936496 TGTTTATTGATCTACTGCAATTGGA 57.064 32.000 7.72 2.96 36.27 3.53
2396 2469 8.347004 TGTTTATTGATCTACTGCAATTGGAA 57.653 30.769 7.72 0.00 36.27 3.53
2397 2470 8.970020 TGTTTATTGATCTACTGCAATTGGAAT 58.030 29.630 7.72 0.00 36.27 3.01
2398 2471 9.455847 GTTTATTGATCTACTGCAATTGGAATC 57.544 33.333 7.72 5.07 36.27 2.52
2399 2472 8.750515 TTATTGATCTACTGCAATTGGAATCA 57.249 30.769 7.72 7.69 36.27 2.57
2400 2473 6.688637 TTGATCTACTGCAATTGGAATCAG 57.311 37.500 7.72 8.29 0.00 2.90
2401 2474 5.748402 TGATCTACTGCAATTGGAATCAGT 58.252 37.500 17.08 17.08 41.93 3.41
2402 2475 6.888105 TGATCTACTGCAATTGGAATCAGTA 58.112 36.000 17.38 17.38 40.01 2.74
2403 2476 7.512130 TGATCTACTGCAATTGGAATCAGTAT 58.488 34.615 18.20 9.94 40.11 2.12
2404 2477 7.994911 TGATCTACTGCAATTGGAATCAGTATT 59.005 33.333 18.20 11.99 40.11 1.89
2405 2478 8.757982 ATCTACTGCAATTGGAATCAGTATTT 57.242 30.769 18.20 10.03 40.11 1.40
2406 2479 8.579850 TCTACTGCAATTGGAATCAGTATTTT 57.420 30.769 18.20 1.94 40.11 1.82
2407 2480 9.679661 TCTACTGCAATTGGAATCAGTATTTTA 57.320 29.630 18.20 4.54 40.11 1.52
2410 2483 8.970020 ACTGCAATTGGAATCAGTATTTTATCA 58.030 29.630 12.91 0.00 37.94 2.15
2411 2484 9.241317 CTGCAATTGGAATCAGTATTTTATCAC 57.759 33.333 7.72 0.00 0.00 3.06
2412 2485 7.914871 TGCAATTGGAATCAGTATTTTATCACG 59.085 33.333 7.72 0.00 0.00 4.35
2413 2486 7.915397 GCAATTGGAATCAGTATTTTATCACGT 59.085 33.333 7.72 0.00 0.00 4.49
2414 2487 9.787532 CAATTGGAATCAGTATTTTATCACGTT 57.212 29.630 0.00 0.00 0.00 3.99
2416 2489 8.786826 TTGGAATCAGTATTTTATCACGTTCT 57.213 30.769 0.00 0.00 0.00 3.01
2417 2490 8.196802 TGGAATCAGTATTTTATCACGTTCTG 57.803 34.615 0.00 0.00 0.00 3.02
2418 2491 7.279981 TGGAATCAGTATTTTATCACGTTCTGG 59.720 37.037 0.00 0.00 0.00 3.86
2419 2492 7.280205 GGAATCAGTATTTTATCACGTTCTGGT 59.720 37.037 0.00 0.00 0.00 4.00
2420 2493 6.961359 TCAGTATTTTATCACGTTCTGGTG 57.039 37.500 0.00 0.00 39.29 4.17
2431 2504 6.438259 TCACGTTCTGGTGATTTTAAACAA 57.562 33.333 0.00 0.00 41.76 2.83
2432 2505 7.033530 TCACGTTCTGGTGATTTTAAACAAT 57.966 32.000 0.00 0.00 41.76 2.71
2433 2506 7.484975 TCACGTTCTGGTGATTTTAAACAATT 58.515 30.769 0.00 0.00 41.76 2.32
2434 2507 7.433719 TCACGTTCTGGTGATTTTAAACAATTG 59.566 33.333 3.24 3.24 41.76 2.32
2435 2508 7.221838 CACGTTCTGGTGATTTTAAACAATTGT 59.778 33.333 4.92 4.92 40.38 2.71
2436 2509 7.762159 ACGTTCTGGTGATTTTAAACAATTGTT 59.238 29.630 18.13 18.13 40.50 2.83
2440 2513 8.812329 TCTGGTGATTTTAAACAATTGTTTTCG 58.188 29.630 34.51 16.54 45.07 3.46
2441 2514 8.480643 TGGTGATTTTAAACAATTGTTTTCGT 57.519 26.923 34.51 20.87 45.07 3.85
2442 2515 8.383619 TGGTGATTTTAAACAATTGTTTTCGTG 58.616 29.630 34.51 0.00 45.07 4.35
2443 2516 8.596380 GGTGATTTTAAACAATTGTTTTCGTGA 58.404 29.630 34.51 18.16 45.07 4.35
2444 2517 9.959775 GTGATTTTAAACAATTGTTTTCGTGAA 57.040 25.926 34.51 22.17 45.07 3.18
2445 2518 9.959775 TGATTTTAAACAATTGTTTTCGTGAAC 57.040 25.926 34.51 21.37 45.07 3.18
2446 2519 9.959775 GATTTTAAACAATTGTTTTCGTGAACA 57.040 25.926 34.51 19.09 45.07 3.18
2447 2520 9.965748 ATTTTAAACAATTGTTTTCGTGAACAG 57.034 25.926 34.51 0.00 45.07 3.16
2448 2521 8.744008 TTTAAACAATTGTTTTCGTGAACAGA 57.256 26.923 34.51 14.92 45.07 3.41
2449 2522 8.744008 TTAAACAATTGTTTTCGTGAACAGAA 57.256 26.923 34.51 19.13 45.07 3.02
2450 2523 7.644986 AAACAATTGTTTTCGTGAACAGAAA 57.355 28.000 27.01 0.00 45.07 2.52
2451 2524 6.869421 ACAATTGTTTTCGTGAACAGAAAG 57.131 33.333 4.92 3.00 40.33 2.62
2452 2525 6.386654 ACAATTGTTTTCGTGAACAGAAAGT 58.613 32.000 4.92 3.45 40.33 2.66
2453 2526 6.866248 ACAATTGTTTTCGTGAACAGAAAGTT 59.134 30.769 4.92 0.00 44.93 2.66
2454 2527 7.383843 ACAATTGTTTTCGTGAACAGAAAGTTT 59.616 29.630 4.92 0.00 41.51 2.66
2455 2528 6.921332 TTGTTTTCGTGAACAGAAAGTTTC 57.079 33.333 7.57 7.57 41.51 2.78
2456 2529 6.249035 TGTTTTCGTGAACAGAAAGTTTCT 57.751 33.333 12.50 12.50 41.51 2.52
2469 2542 6.469782 AGAAAGTTTCTGGAATTTTCAGCA 57.530 33.333 17.35 0.00 42.92 4.41
2470 2543 6.877236 AGAAAGTTTCTGGAATTTTCAGCAA 58.123 32.000 17.35 0.00 42.92 3.91
2471 2544 7.330262 AGAAAGTTTCTGGAATTTTCAGCAAA 58.670 30.769 17.35 0.19 42.92 3.68
2472 2545 7.823799 AGAAAGTTTCTGGAATTTTCAGCAAAA 59.176 29.630 17.35 0.00 42.92 2.44
2473 2546 8.510243 AAAGTTTCTGGAATTTTCAGCAAAAT 57.490 26.923 0.00 0.00 42.95 1.82
2474 2547 7.719778 AGTTTCTGGAATTTTCAGCAAAATC 57.280 32.000 0.00 0.00 40.68 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 4.262808 CCTTATCCATTCCTCTTCGATGCT 60.263 45.833 0.00 0.00 0.00 3.79
95 96 2.108952 GGCATCACCCTTATCCATTCCT 59.891 50.000 0.00 0.00 0.00 3.36
321 324 1.996191 GTGCTGGACTTGATCTCGTTC 59.004 52.381 0.00 0.00 0.00 3.95
358 361 0.693049 AAGGTTGAGGAAGACGGCAT 59.307 50.000 0.00 0.00 0.00 4.40
859 866 0.253044 GCAGAAGATGGCCACCACTA 59.747 55.000 8.16 0.00 35.80 2.74
969 976 2.423898 TACCAGCGGTAGAGCAGCC 61.424 63.158 3.72 0.00 39.13 4.85
1187 1195 4.202264 ACTGAGATCACCGGGTTATGATTC 60.202 45.833 6.32 7.11 35.67 2.52
1222 1231 5.422214 AATCACCCCTCCATCGATATTAC 57.578 43.478 0.00 0.00 0.00 1.89
1548 1561 8.978539 GGAAACAAATAACAGATTTTCAGGAAC 58.021 33.333 0.00 0.00 0.00 3.62
1697 1710 1.307343 CTCCCACCCTGGTCCATCT 60.307 63.158 0.00 0.00 35.17 2.90
2055 2128 3.491639 GCGGTTTATTTTCGCTGGTTTTT 59.508 39.130 0.00 0.00 45.16 1.94
2056 2129 3.054166 GCGGTTTATTTTCGCTGGTTTT 58.946 40.909 0.00 0.00 45.16 2.43
2057 2130 2.668250 GCGGTTTATTTTCGCTGGTTT 58.332 42.857 0.00 0.00 45.16 3.27
2058 2131 1.400500 CGCGGTTTATTTTCGCTGGTT 60.400 47.619 0.00 0.00 46.23 3.67
2059 2132 0.167251 CGCGGTTTATTTTCGCTGGT 59.833 50.000 0.00 0.00 46.23 4.00
2060 2133 0.522495 CCGCGGTTTATTTTCGCTGG 60.522 55.000 19.50 0.00 46.23 4.85
2090 2163 4.348495 TCCTCCCACCACCCCCTC 62.348 72.222 0.00 0.00 0.00 4.30
2091 2164 4.354943 CTCCTCCCACCACCCCCT 62.355 72.222 0.00 0.00 0.00 4.79
2092 2165 4.348495 TCTCCTCCCACCACCCCC 62.348 72.222 0.00 0.00 0.00 5.40
2093 2166 2.689034 CTCTCCTCCCACCACCCC 60.689 72.222 0.00 0.00 0.00 4.95
2094 2167 1.990614 GTCTCTCCTCCCACCACCC 60.991 68.421 0.00 0.00 0.00 4.61
2095 2168 2.352032 CGTCTCTCCTCCCACCACC 61.352 68.421 0.00 0.00 0.00 4.61
2096 2169 0.898789 TTCGTCTCTCCTCCCACCAC 60.899 60.000 0.00 0.00 0.00 4.16
2097 2170 0.178944 TTTCGTCTCTCCTCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
2098 2171 0.974383 TTTTCGTCTCTCCTCCCACC 59.026 55.000 0.00 0.00 0.00 4.61
2099 2172 2.833631 TTTTTCGTCTCTCCTCCCAC 57.166 50.000 0.00 0.00 0.00 4.61
2131 2204 4.642429 AGTGAATAGTCTCTGCGGTTTTT 58.358 39.130 0.00 0.00 0.00 1.94
2132 2205 4.273148 AGTGAATAGTCTCTGCGGTTTT 57.727 40.909 0.00 0.00 0.00 2.43
2133 2206 3.963428 AGTGAATAGTCTCTGCGGTTT 57.037 42.857 0.00 0.00 0.00 3.27
2134 2207 4.463186 AGTTAGTGAATAGTCTCTGCGGTT 59.537 41.667 5.09 0.00 0.00 4.44
2135 2208 4.017808 AGTTAGTGAATAGTCTCTGCGGT 58.982 43.478 5.09 0.00 0.00 5.68
2136 2209 4.602995 GAGTTAGTGAATAGTCTCTGCGG 58.397 47.826 5.09 0.00 0.00 5.69
2137 2210 4.201832 ACGAGTTAGTGAATAGTCTCTGCG 60.202 45.833 5.09 6.19 0.00 5.18
2138 2211 5.238006 ACGAGTTAGTGAATAGTCTCTGC 57.762 43.478 5.09 0.00 0.00 4.26
2139 2212 5.354513 TGGACGAGTTAGTGAATAGTCTCTG 59.645 44.000 5.09 0.00 0.00 3.35
2140 2213 5.498393 TGGACGAGTTAGTGAATAGTCTCT 58.502 41.667 0.09 0.09 0.00 3.10
2153 2226 6.244552 TCTCTACTCCTAATGGACGAGTTA 57.755 41.667 0.00 0.00 37.93 2.24
2186 2259 9.449719 CATAGAAAAGTTGGAATACAGTAGGTT 57.550 33.333 0.00 0.00 0.00 3.50
2187 2260 8.047310 CCATAGAAAAGTTGGAATACAGTAGGT 58.953 37.037 0.00 0.00 31.94 3.08
2188 2261 8.047310 ACCATAGAAAAGTTGGAATACAGTAGG 58.953 37.037 0.00 0.00 34.52 3.18
2189 2262 9.449719 AACCATAGAAAAGTTGGAATACAGTAG 57.550 33.333 0.00 0.00 34.52 2.57
2190 2263 9.802039 AAACCATAGAAAAGTTGGAATACAGTA 57.198 29.630 0.00 0.00 34.52 2.74
2191 2264 8.706322 AAACCATAGAAAAGTTGGAATACAGT 57.294 30.769 0.00 0.00 34.52 3.55
2210 2283 9.969001 TGGCTAGTAAAAGAGTTTATAAACCAT 57.031 29.630 21.92 10.24 39.71 3.55
2211 2284 9.969001 ATGGCTAGTAAAAGAGTTTATAAACCA 57.031 29.630 21.92 10.38 39.71 3.67
2220 2293 9.771534 GATGAATCTATGGCTAGTAAAAGAGTT 57.228 33.333 0.00 0.00 0.00 3.01
2221 2294 8.928448 TGATGAATCTATGGCTAGTAAAAGAGT 58.072 33.333 0.00 0.00 0.00 3.24
2222 2295 9.770097 TTGATGAATCTATGGCTAGTAAAAGAG 57.230 33.333 0.00 0.00 0.00 2.85
2229 2302 9.007901 GCTTATTTTGATGAATCTATGGCTAGT 57.992 33.333 0.00 0.00 0.00 2.57
2230 2303 9.006839 TGCTTATTTTGATGAATCTATGGCTAG 57.993 33.333 0.00 0.00 0.00 3.42
2231 2304 8.922931 TGCTTATTTTGATGAATCTATGGCTA 57.077 30.769 0.00 0.00 0.00 3.93
2232 2305 7.828508 TGCTTATTTTGATGAATCTATGGCT 57.171 32.000 0.00 0.00 0.00 4.75
2233 2306 8.758715 GTTTGCTTATTTTGATGAATCTATGGC 58.241 33.333 0.00 0.00 0.00 4.40
2234 2307 9.806203 TGTTTGCTTATTTTGATGAATCTATGG 57.194 29.630 0.00 0.00 0.00 2.74
2238 2311 8.981647 GTGTTGTTTGCTTATTTTGATGAATCT 58.018 29.630 0.00 0.00 0.00 2.40
2239 2312 8.763356 TGTGTTGTTTGCTTATTTTGATGAATC 58.237 29.630 0.00 0.00 0.00 2.52
2240 2313 8.550376 GTGTGTTGTTTGCTTATTTTGATGAAT 58.450 29.630 0.00 0.00 0.00 2.57
2241 2314 7.253917 CGTGTGTTGTTTGCTTATTTTGATGAA 60.254 33.333 0.00 0.00 0.00 2.57
2242 2315 6.198029 CGTGTGTTGTTTGCTTATTTTGATGA 59.802 34.615 0.00 0.00 0.00 2.92
2243 2316 6.198029 TCGTGTGTTGTTTGCTTATTTTGATG 59.802 34.615 0.00 0.00 0.00 3.07
2244 2317 6.269315 TCGTGTGTTGTTTGCTTATTTTGAT 58.731 32.000 0.00 0.00 0.00 2.57
2245 2318 5.641709 TCGTGTGTTGTTTGCTTATTTTGA 58.358 33.333 0.00 0.00 0.00 2.69
2246 2319 5.940603 TCGTGTGTTGTTTGCTTATTTTG 57.059 34.783 0.00 0.00 0.00 2.44
2247 2320 6.952935 TTTCGTGTGTTGTTTGCTTATTTT 57.047 29.167 0.00 0.00 0.00 1.82
2248 2321 6.952935 TTTTCGTGTGTTGTTTGCTTATTT 57.047 29.167 0.00 0.00 0.00 1.40
2249 2322 6.366332 TGTTTTTCGTGTGTTGTTTGCTTATT 59.634 30.769 0.00 0.00 0.00 1.40
2250 2323 5.864474 TGTTTTTCGTGTGTTGTTTGCTTAT 59.136 32.000 0.00 0.00 0.00 1.73
2251 2324 5.220381 TGTTTTTCGTGTGTTGTTTGCTTA 58.780 33.333 0.00 0.00 0.00 3.09
2252 2325 4.051922 TGTTTTTCGTGTGTTGTTTGCTT 58.948 34.783 0.00 0.00 0.00 3.91
2253 2326 3.643763 TGTTTTTCGTGTGTTGTTTGCT 58.356 36.364 0.00 0.00 0.00 3.91
2254 2327 3.670991 TCTGTTTTTCGTGTGTTGTTTGC 59.329 39.130 0.00 0.00 0.00 3.68
2255 2328 5.814314 TTCTGTTTTTCGTGTGTTGTTTG 57.186 34.783 0.00 0.00 0.00 2.93
2256 2329 6.307800 CAGATTCTGTTTTTCGTGTGTTGTTT 59.692 34.615 5.46 0.00 0.00 2.83
2257 2330 5.799936 CAGATTCTGTTTTTCGTGTGTTGTT 59.200 36.000 5.46 0.00 0.00 2.83
2258 2331 5.106317 ACAGATTCTGTTTTTCGTGTGTTGT 60.106 36.000 13.61 0.00 42.59 3.32
2259 2332 5.331902 ACAGATTCTGTTTTTCGTGTGTTG 58.668 37.500 13.61 0.00 42.59 3.33
2260 2333 5.123186 TGACAGATTCTGTTTTTCGTGTGTT 59.877 36.000 19.88 0.00 45.44 3.32
2261 2334 4.634004 TGACAGATTCTGTTTTTCGTGTGT 59.366 37.500 19.88 0.00 45.44 3.72
2262 2335 5.155509 TGACAGATTCTGTTTTTCGTGTG 57.844 39.130 19.88 0.00 45.44 3.82
2263 2336 5.811399 TTGACAGATTCTGTTTTTCGTGT 57.189 34.783 19.88 0.00 45.44 4.49
2264 2337 6.526325 TGTTTTGACAGATTCTGTTTTTCGTG 59.474 34.615 19.88 0.00 45.44 4.35
2265 2338 6.616947 TGTTTTGACAGATTCTGTTTTTCGT 58.383 32.000 19.88 0.00 45.44 3.85
2266 2339 6.966632 TCTGTTTTGACAGATTCTGTTTTTCG 59.033 34.615 19.88 6.88 45.44 3.46
2267 2340 8.587111 GTTCTGTTTTGACAGATTCTGTTTTTC 58.413 33.333 19.88 8.30 45.44 2.29
2268 2341 8.087750 TGTTCTGTTTTGACAGATTCTGTTTTT 58.912 29.630 19.88 0.00 45.44 1.94
2269 2342 7.601856 TGTTCTGTTTTGACAGATTCTGTTTT 58.398 30.769 19.88 0.00 45.44 2.43
2270 2343 7.094205 ACTGTTCTGTTTTGACAGATTCTGTTT 60.094 33.333 19.88 0.00 45.44 2.83
2271 2344 6.375455 ACTGTTCTGTTTTGACAGATTCTGTT 59.625 34.615 19.88 4.78 45.44 3.16
2273 2346 6.259608 AGACTGTTCTGTTTTGACAGATTCTG 59.740 38.462 12.17 12.17 45.03 3.02
2274 2347 6.259608 CAGACTGTTCTGTTTTGACAGATTCT 59.740 38.462 9.78 7.18 45.03 2.40
2275 2348 6.425504 CAGACTGTTCTGTTTTGACAGATTC 58.574 40.000 9.78 7.43 45.03 2.52
2276 2349 6.369059 CAGACTGTTCTGTTTTGACAGATT 57.631 37.500 9.78 0.00 45.03 2.40
2277 2350 5.998454 CAGACTGTTCTGTTTTGACAGAT 57.002 39.130 9.78 0.00 45.03 2.90
2289 2362 8.638629 AGTTACAGATTACTACAGACTGTTCT 57.361 34.615 14.50 7.17 41.17 3.01
2292 2365 8.449397 CGTTAGTTACAGATTACTACAGACTGT 58.551 37.037 13.68 13.68 42.94 3.55
2293 2366 7.428761 GCGTTAGTTACAGATTACTACAGACTG 59.571 40.741 0.00 0.00 35.14 3.51
2294 2367 7.120285 TGCGTTAGTTACAGATTACTACAGACT 59.880 37.037 0.00 0.00 0.00 3.24
2295 2368 7.246311 TGCGTTAGTTACAGATTACTACAGAC 58.754 38.462 0.00 0.00 0.00 3.51
2296 2369 7.381766 TGCGTTAGTTACAGATTACTACAGA 57.618 36.000 0.00 0.00 0.00 3.41
2297 2370 8.371053 GTTTGCGTTAGTTACAGATTACTACAG 58.629 37.037 0.00 0.00 0.00 2.74
2298 2371 8.084073 AGTTTGCGTTAGTTACAGATTACTACA 58.916 33.333 0.00 0.00 0.00 2.74
2299 2372 8.458212 AGTTTGCGTTAGTTACAGATTACTAC 57.542 34.615 0.00 0.00 0.00 2.73
2300 2373 9.132521 GAAGTTTGCGTTAGTTACAGATTACTA 57.867 33.333 0.00 0.00 0.00 1.82
2301 2374 7.871463 AGAAGTTTGCGTTAGTTACAGATTACT 59.129 33.333 0.00 0.00 0.00 2.24
2302 2375 7.950496 CAGAAGTTTGCGTTAGTTACAGATTAC 59.050 37.037 0.00 0.00 0.00 1.89
2303 2376 7.868922 TCAGAAGTTTGCGTTAGTTACAGATTA 59.131 33.333 0.00 0.00 0.00 1.75
2304 2377 6.704493 TCAGAAGTTTGCGTTAGTTACAGATT 59.296 34.615 0.00 0.00 0.00 2.40
2305 2378 6.220930 TCAGAAGTTTGCGTTAGTTACAGAT 58.779 36.000 0.00 0.00 0.00 2.90
2306 2379 5.593968 TCAGAAGTTTGCGTTAGTTACAGA 58.406 37.500 0.00 0.00 0.00 3.41
2307 2380 5.900339 TCAGAAGTTTGCGTTAGTTACAG 57.100 39.130 0.00 0.00 0.00 2.74
2308 2381 6.314400 AGTTTCAGAAGTTTGCGTTAGTTACA 59.686 34.615 0.00 0.00 0.00 2.41
2309 2382 6.712549 AGTTTCAGAAGTTTGCGTTAGTTAC 58.287 36.000 0.00 0.00 0.00 2.50
2310 2383 6.535865 TGAGTTTCAGAAGTTTGCGTTAGTTA 59.464 34.615 0.00 0.00 0.00 2.24
2311 2384 5.353123 TGAGTTTCAGAAGTTTGCGTTAGTT 59.647 36.000 0.00 0.00 0.00 2.24
2312 2385 4.873827 TGAGTTTCAGAAGTTTGCGTTAGT 59.126 37.500 0.00 0.00 0.00 2.24
2313 2386 5.403897 TGAGTTTCAGAAGTTTGCGTTAG 57.596 39.130 0.00 0.00 0.00 2.34
2326 2399 9.971922 ATTTTGGTAGATTTTTCTGAGTTTCAG 57.028 29.630 0.00 0.00 45.59 3.02
2330 2403 9.807921 TCCTATTTTGGTAGATTTTTCTGAGTT 57.192 29.630 0.00 0.00 0.00 3.01
2331 2404 9.807921 TTCCTATTTTGGTAGATTTTTCTGAGT 57.192 29.630 0.00 0.00 0.00 3.41
2335 2408 9.244292 GGTCTTCCTATTTTGGTAGATTTTTCT 57.756 33.333 0.00 0.00 36.24 2.52
2336 2409 9.244292 AGGTCTTCCTATTTTGGTAGATTTTTC 57.756 33.333 0.00 0.00 43.12 2.29
2338 2411 9.907229 CTAGGTCTTCCTATTTTGGTAGATTTT 57.093 33.333 0.00 0.00 44.30 1.82
2339 2412 9.280456 TCTAGGTCTTCCTATTTTGGTAGATTT 57.720 33.333 0.00 0.00 44.30 2.17
2340 2413 8.855804 TCTAGGTCTTCCTATTTTGGTAGATT 57.144 34.615 0.00 0.00 44.30 2.40
2341 2414 8.855804 TTCTAGGTCTTCCTATTTTGGTAGAT 57.144 34.615 0.00 0.00 44.30 1.98
2342 2415 8.674925 TTTCTAGGTCTTCCTATTTTGGTAGA 57.325 34.615 0.00 0.00 44.30 2.59
2343 2416 9.907229 ATTTTCTAGGTCTTCCTATTTTGGTAG 57.093 33.333 0.00 0.00 44.30 3.18
2345 2418 9.601810 AAATTTTCTAGGTCTTCCTATTTTGGT 57.398 29.630 0.00 0.00 44.30 3.67
2346 2419 9.860898 CAAATTTTCTAGGTCTTCCTATTTTGG 57.139 33.333 0.00 0.00 44.30 3.28
2368 2441 9.590451 CCAATTGCAGTAGATCAATAAACAAAT 57.410 29.630 0.00 0.00 33.05 2.32
2369 2442 8.801299 TCCAATTGCAGTAGATCAATAAACAAA 58.199 29.630 0.00 0.00 33.05 2.83
2370 2443 8.347004 TCCAATTGCAGTAGATCAATAAACAA 57.653 30.769 0.00 0.00 33.05 2.83
2371 2444 7.936496 TCCAATTGCAGTAGATCAATAAACA 57.064 32.000 0.00 0.00 33.05 2.83
2372 2445 9.455847 GATTCCAATTGCAGTAGATCAATAAAC 57.544 33.333 0.00 0.00 33.05 2.01
2373 2446 9.187996 TGATTCCAATTGCAGTAGATCAATAAA 57.812 29.630 0.00 0.00 33.05 1.40
2374 2447 8.750515 TGATTCCAATTGCAGTAGATCAATAA 57.249 30.769 0.00 0.00 33.05 1.40
2375 2448 7.994911 ACTGATTCCAATTGCAGTAGATCAATA 59.005 33.333 12.91 0.00 39.61 1.90
2376 2449 6.832384 ACTGATTCCAATTGCAGTAGATCAAT 59.168 34.615 12.91 0.00 39.61 2.57
2377 2450 6.182627 ACTGATTCCAATTGCAGTAGATCAA 58.817 36.000 12.91 0.00 39.61 2.57
2378 2451 5.748402 ACTGATTCCAATTGCAGTAGATCA 58.252 37.500 12.91 8.29 39.61 2.92
2379 2452 7.976135 ATACTGATTCCAATTGCAGTAGATC 57.024 36.000 20.82 9.99 44.26 2.75
2380 2453 8.757982 AAATACTGATTCCAATTGCAGTAGAT 57.242 30.769 20.82 13.51 44.26 1.98
2381 2454 8.579850 AAAATACTGATTCCAATTGCAGTAGA 57.420 30.769 20.82 8.47 44.26 2.59
2384 2457 8.970020 TGATAAAATACTGATTCCAATTGCAGT 58.030 29.630 17.08 17.08 43.40 4.40
2385 2458 9.241317 GTGATAAAATACTGATTCCAATTGCAG 57.759 33.333 0.00 4.63 34.65 4.41
2386 2459 7.914871 CGTGATAAAATACTGATTCCAATTGCA 59.085 33.333 0.00 0.00 0.00 4.08
2387 2460 7.915397 ACGTGATAAAATACTGATTCCAATTGC 59.085 33.333 0.00 0.00 0.00 3.56
2388 2461 9.787532 AACGTGATAAAATACTGATTCCAATTG 57.212 29.630 0.00 0.00 0.00 2.32
2390 2463 9.396022 AGAACGTGATAAAATACTGATTCCAAT 57.604 29.630 0.00 0.00 0.00 3.16
2391 2464 8.664798 CAGAACGTGATAAAATACTGATTCCAA 58.335 33.333 0.00 0.00 0.00 3.53
2392 2465 7.279981 CCAGAACGTGATAAAATACTGATTCCA 59.720 37.037 0.00 0.00 0.00 3.53
2393 2466 7.280205 ACCAGAACGTGATAAAATACTGATTCC 59.720 37.037 0.00 0.00 0.00 3.01
2394 2467 8.116753 CACCAGAACGTGATAAAATACTGATTC 58.883 37.037 0.00 0.00 35.68 2.52
2395 2468 7.822334 TCACCAGAACGTGATAAAATACTGATT 59.178 33.333 0.00 0.00 37.85 2.57
2396 2469 7.327975 TCACCAGAACGTGATAAAATACTGAT 58.672 34.615 0.00 0.00 37.85 2.90
2397 2470 6.693466 TCACCAGAACGTGATAAAATACTGA 58.307 36.000 0.00 0.00 37.85 3.41
2398 2471 6.961359 TCACCAGAACGTGATAAAATACTG 57.039 37.500 0.00 0.00 37.85 2.74
2408 2481 6.438259 TTGTTTAAAATCACCAGAACGTGA 57.562 33.333 0.00 0.00 46.36 4.35
2409 2482 7.221838 ACAATTGTTTAAAATCACCAGAACGTG 59.778 33.333 4.92 0.00 34.93 4.49
2410 2483 7.262048 ACAATTGTTTAAAATCACCAGAACGT 58.738 30.769 4.92 0.00 0.00 3.99
2411 2484 7.692908 ACAATTGTTTAAAATCACCAGAACG 57.307 32.000 4.92 0.00 0.00 3.95
2414 2487 8.812329 CGAAAACAATTGTTTAAAATCACCAGA 58.188 29.630 31.18 0.00 46.47 3.86
2415 2488 8.599774 ACGAAAACAATTGTTTAAAATCACCAG 58.400 29.630 31.18 16.42 46.47 4.00
2416 2489 8.383619 CACGAAAACAATTGTTTAAAATCACCA 58.616 29.630 31.18 0.00 46.47 4.17
2417 2490 8.596380 TCACGAAAACAATTGTTTAAAATCACC 58.404 29.630 31.18 14.53 46.47 4.02
2418 2491 9.959775 TTCACGAAAACAATTGTTTAAAATCAC 57.040 25.926 31.18 16.97 46.47 3.06
2419 2492 9.959775 GTTCACGAAAACAATTGTTTAAAATCA 57.040 25.926 31.18 15.18 46.47 2.57
2420 2493 9.959775 TGTTCACGAAAACAATTGTTTAAAATC 57.040 25.926 31.18 23.77 46.47 2.17
2421 2494 9.965748 CTGTTCACGAAAACAATTGTTTAAAAT 57.034 25.926 31.18 18.84 46.47 1.82
2422 2495 9.193133 TCTGTTCACGAAAACAATTGTTTAAAA 57.807 25.926 31.18 17.86 46.47 1.52
2423 2496 8.744008 TCTGTTCACGAAAACAATTGTTTAAA 57.256 26.923 31.18 18.89 46.47 1.52
2424 2497 8.744008 TTCTGTTCACGAAAACAATTGTTTAA 57.256 26.923 31.18 20.45 46.47 1.52
2425 2498 8.744008 TTTCTGTTCACGAAAACAATTGTTTA 57.256 26.923 31.18 16.26 46.47 2.01
2427 2500 6.866248 ACTTTCTGTTCACGAAAACAATTGTT 59.134 30.769 18.13 18.13 38.60 2.83
2428 2501 6.386654 ACTTTCTGTTCACGAAAACAATTGT 58.613 32.000 4.92 4.92 38.60 2.71
2429 2502 6.869421 ACTTTCTGTTCACGAAAACAATTG 57.131 33.333 3.24 3.24 38.60 2.32
2430 2503 7.812669 AGAAACTTTCTGTTCACGAAAACAATT 59.187 29.630 3.07 0.00 38.60 2.32
2431 2504 7.312899 AGAAACTTTCTGTTCACGAAAACAAT 58.687 30.769 3.07 0.00 38.60 2.71
2432 2505 6.674066 AGAAACTTTCTGTTCACGAAAACAA 58.326 32.000 3.07 0.00 38.60 2.83
2433 2506 6.249035 AGAAACTTTCTGTTCACGAAAACA 57.751 33.333 3.07 7.06 38.91 2.83
2446 2519 6.469782 TGCTGAAAATTCCAGAAACTTTCT 57.530 33.333 10.84 0.00 41.70 2.52
2447 2520 7.538303 TTTGCTGAAAATTCCAGAAACTTTC 57.462 32.000 10.84 9.65 29.33 2.62
2448 2521 7.920160 TTTTGCTGAAAATTCCAGAAACTTT 57.080 28.000 10.84 0.00 29.33 2.66
2449 2522 8.146479 GATTTTGCTGAAAATTCCAGAAACTT 57.854 30.769 10.84 0.00 41.06 2.66
2450 2523 7.719778 GATTTTGCTGAAAATTCCAGAAACT 57.280 32.000 10.84 4.69 41.06 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.