Multiple sequence alignment - TraesCS7D01G390200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G390200 chr7D 100.000 2591 0 0 1 2591 505590738 505588148 0.000000e+00 4785.0
1 TraesCS7D01G390200 chr7D 88.701 947 78 21 734 1672 505143677 505142752 0.000000e+00 1129.0
2 TraesCS7D01G390200 chr7D 90.762 801 60 5 895 1688 505329656 505328863 0.000000e+00 1057.0
3 TraesCS7D01G390200 chr7D 87.008 508 44 12 1888 2380 505328405 505327905 1.050000e-153 553.0
4 TraesCS7D01G390200 chr7D 80.247 648 84 25 1 634 505145910 505145293 5.090000e-122 448.0
5 TraesCS7D01G390200 chr7D 79.969 649 84 26 1 634 505353780 505353163 1.100000e-118 436.0
6 TraesCS7D01G390200 chr7D 94.558 147 8 0 2445 2591 505580854 505580708 7.210000e-56 228.0
7 TraesCS7D01G390200 chr7B 89.085 962 80 17 734 1689 533309675 533308733 0.000000e+00 1171.0
8 TraesCS7D01G390200 chr7B 91.233 787 53 9 915 1688 533373062 533372279 0.000000e+00 1057.0
9 TraesCS7D01G390200 chr7B 88.821 814 67 15 865 1675 533552717 533551925 0.000000e+00 977.0
10 TraesCS7D01G390200 chr7B 85.980 699 51 21 1 678 533555524 533554852 0.000000e+00 704.0
11 TraesCS7D01G390200 chr7B 79.834 481 57 21 167 640 533324868 533324421 5.380000e-82 315.0
12 TraesCS7D01G390200 chr7B 92.308 169 12 1 1772 1940 533372276 533372109 3.330000e-59 239.0
13 TraesCS7D01G390200 chr7B 94.558 147 8 0 2445 2591 104744919 104744773 7.210000e-56 228.0
14 TraesCS7D01G390200 chr7B 94.253 87 4 1 1689 1775 13869113 13869198 5.820000e-27 132.0
15 TraesCS7D01G390200 chr7A 87.765 989 76 24 706 1675 573069952 573068990 0.000000e+00 1114.0
16 TraesCS7D01G390200 chr7A 91.327 761 59 7 891 1648 572875948 572875192 0.000000e+00 1033.0
17 TraesCS7D01G390200 chr7A 83.010 671 48 18 47 678 573070664 573070021 4.870000e-152 547.0
18 TraesCS7D01G390200 chr7A 83.261 460 46 13 1933 2380 573068743 573068303 6.720000e-106 394.0
19 TraesCS7D01G390200 chr7A 75.412 728 96 45 4 678 573039240 573038543 2.540000e-70 276.0
20 TraesCS7D01G390200 chr7A 88.344 163 15 3 1772 1933 573068971 573068812 2.630000e-45 193.0
21 TraesCS7D01G390200 chr7A 85.507 138 16 4 2246 2380 573029559 573029423 9.670000e-30 141.0
22 TraesCS7D01G390200 chr2B 89.865 148 13 2 2445 2591 541875351 541875497 3.400000e-44 189.0
23 TraesCS7D01G390200 chr2B 84.146 82 12 1 2445 2526 661426999 661426919 7.690000e-11 78.7
24 TraesCS7D01G390200 chr6B 88.514 148 16 1 2445 2591 141023469 141023322 7.370000e-41 178.0
25 TraesCS7D01G390200 chr6B 85.034 147 20 2 2445 2591 202356643 202356499 5.780000e-32 148.0
26 TraesCS7D01G390200 chr3D 95.294 85 4 0 1689 1773 455100575 455100659 4.500000e-28 135.0
27 TraesCS7D01G390200 chr1B 95.294 85 4 0 1689 1773 562890134 562890050 4.500000e-28 135.0
28 TraesCS7D01G390200 chr1B 91.398 93 7 1 1682 1773 646470992 646470900 2.710000e-25 126.0
29 TraesCS7D01G390200 chr6D 94.253 87 5 0 1688 1774 95724149 95724063 1.620000e-27 134.0
30 TraesCS7D01G390200 chr5D 94.186 86 5 0 1689 1774 325476209 325476124 5.820000e-27 132.0
31 TraesCS7D01G390200 chr5D 94.118 85 5 0 1692 1776 548003592 548003508 2.090000e-26 130.0
32 TraesCS7D01G390200 chr3B 94.118 85 5 0 1689 1773 229298685 229298769 2.090000e-26 130.0
33 TraesCS7D01G390200 chr3B 91.579 95 7 1 1680 1773 741580546 741580452 2.090000e-26 130.0
34 TraesCS7D01G390200 chr3A 82.558 86 13 2 2445 2529 236266058 236266142 9.940000e-10 75.0
35 TraesCS7D01G390200 chr1A 89.583 48 5 0 2445 2492 185965398 185965351 7.740000e-06 62.1
36 TraesCS7D01G390200 chr2A 85.185 54 8 0 2445 2498 412461768 412461715 3.600000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G390200 chr7D 505588148 505590738 2590 True 4785.0 4785 100.0000 1 2591 1 chr7D.!!$R3 2590
1 TraesCS7D01G390200 chr7D 505327905 505329656 1751 True 805.0 1057 88.8850 895 2380 2 chr7D.!!$R5 1485
2 TraesCS7D01G390200 chr7D 505142752 505145910 3158 True 788.5 1129 84.4740 1 1672 2 chr7D.!!$R4 1671
3 TraesCS7D01G390200 chr7D 505353163 505353780 617 True 436.0 436 79.9690 1 634 1 chr7D.!!$R1 633
4 TraesCS7D01G390200 chr7B 533308733 533309675 942 True 1171.0 1171 89.0850 734 1689 1 chr7B.!!$R2 955
5 TraesCS7D01G390200 chr7B 533551925 533555524 3599 True 840.5 977 87.4005 1 1675 2 chr7B.!!$R5 1674
6 TraesCS7D01G390200 chr7B 533372109 533373062 953 True 648.0 1057 91.7705 915 1940 2 chr7B.!!$R4 1025
7 TraesCS7D01G390200 chr7A 572875192 572875948 756 True 1033.0 1033 91.3270 891 1648 1 chr7A.!!$R1 757
8 TraesCS7D01G390200 chr7A 573068303 573070664 2361 True 562.0 1114 85.5950 47 2380 4 chr7A.!!$R4 2333
9 TraesCS7D01G390200 chr7A 573038543 573039240 697 True 276.0 276 75.4120 4 678 1 chr7A.!!$R3 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 3991 0.105246 CATGTCCCTCCTAGGCTCCT 60.105 60.0 2.96 0.0 32.73 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 5952 0.035739 TTGCGGGAGGTTTACTGGTC 59.964 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 78 3.485633 GCTGATACGAATACGATACGCA 58.514 45.455 0.00 0.00 42.66 5.24
262 291 5.417862 CGAAACGCACGGTAATTATAAGAC 58.582 41.667 0.00 0.00 0.00 3.01
432 522 2.223641 GGTTTTTGTTTCCGTCACTCCC 60.224 50.000 0.00 0.00 0.00 4.30
499 604 2.722201 GGTCCCTACCGAGGTGCTG 61.722 68.421 4.80 0.00 41.95 4.41
507 612 2.561478 ACCGAGGTGCTGTTTTACAT 57.439 45.000 0.00 0.00 0.00 2.29
516 621 1.201921 GCTGTTTTACATGACGAGGCG 60.202 52.381 0.00 0.00 0.00 5.52
530 635 3.455152 GGCGGGTGGCTTTCTTTT 58.545 55.556 0.00 0.00 42.94 2.27
565 671 0.313672 GGCGAATTTGTGGCTTGACA 59.686 50.000 0.00 0.00 0.00 3.58
566 672 1.666888 GGCGAATTTGTGGCTTGACAG 60.667 52.381 0.00 0.00 0.00 3.51
568 674 2.543653 GCGAATTTGTGGCTTGACAGTT 60.544 45.455 0.00 0.00 0.00 3.16
569 675 3.705604 CGAATTTGTGGCTTGACAGTTT 58.294 40.909 0.00 0.00 0.00 2.66
570 676 3.486841 CGAATTTGTGGCTTGACAGTTTG 59.513 43.478 0.00 0.00 0.00 2.93
572 678 3.502191 TTTGTGGCTTGACAGTTTGAC 57.498 42.857 0.00 0.00 0.00 3.18
573 679 2.418368 TGTGGCTTGACAGTTTGACT 57.582 45.000 0.00 0.00 0.00 3.41
574 680 3.552132 TGTGGCTTGACAGTTTGACTA 57.448 42.857 0.00 0.00 0.00 2.59
575 681 3.202906 TGTGGCTTGACAGTTTGACTAC 58.797 45.455 0.00 0.00 0.00 2.73
580 690 4.213482 GGCTTGACAGTTTGACTACGAAAT 59.787 41.667 0.00 0.00 0.00 2.17
703 3448 6.489127 TGTGCAACATACAATTGGTAGTAC 57.511 37.500 10.83 4.07 45.67 2.73
704 3449 5.998363 TGTGCAACATACAATTGGTAGTACA 59.002 36.000 10.83 6.43 45.67 2.90
719 3464 9.965824 ATTGGTAGTACAAGAAAACAAGATTTG 57.034 29.630 2.06 0.00 33.23 2.32
720 3465 7.422399 TGGTAGTACAAGAAAACAAGATTTGC 58.578 34.615 2.06 0.00 0.00 3.68
723 3468 9.516314 GTAGTACAAGAAAACAAGATTTGCTTT 57.484 29.630 0.00 0.00 33.60 3.51
725 3470 6.667007 ACAAGAAAACAAGATTTGCTTTGG 57.333 33.333 0.00 0.00 33.60 3.28
726 3471 5.065090 ACAAGAAAACAAGATTTGCTTTGGC 59.935 36.000 0.00 0.00 33.60 4.52
727 3472 5.027293 AGAAAACAAGATTTGCTTTGGCT 57.973 34.783 0.00 0.00 39.59 4.75
728 3473 5.052481 AGAAAACAAGATTTGCTTTGGCTC 58.948 37.500 0.00 0.00 39.59 4.70
729 3474 4.405116 AAACAAGATTTGCTTTGGCTCA 57.595 36.364 0.00 0.00 39.59 4.26
730 3475 4.405116 AACAAGATTTGCTTTGGCTCAA 57.595 36.364 0.00 0.00 39.59 3.02
731 3476 3.986277 ACAAGATTTGCTTTGGCTCAAG 58.014 40.909 0.00 0.00 39.59 3.02
732 3477 3.638160 ACAAGATTTGCTTTGGCTCAAGA 59.362 39.130 1.67 0.00 39.59 3.02
736 3489 3.441496 TTTGCTTTGGCTCAAGACAAG 57.559 42.857 0.00 0.00 44.95 3.16
803 3560 1.762370 TCAAGGAGTCACAAGCTCACA 59.238 47.619 0.00 0.00 34.83 3.58
835 3593 2.381911 ACCAAGGGAGCTAAATGCATG 58.618 47.619 0.00 0.00 45.94 4.06
862 3622 9.698309 TGCATTTTAATTTAATTCGTTTCCAGA 57.302 25.926 0.00 0.00 0.00 3.86
870 3973 6.885952 TTAATTCGTTTCCAGATTCAACCA 57.114 33.333 0.00 0.00 0.00 3.67
883 3986 1.879575 TCAACCATGTCCCTCCTAGG 58.120 55.000 0.82 0.82 34.30 3.02
888 3991 0.105246 CATGTCCCTCCTAGGCTCCT 60.105 60.000 2.96 0.00 32.73 3.69
889 3992 1.148027 CATGTCCCTCCTAGGCTCCTA 59.852 57.143 2.96 0.00 32.73 2.94
905 4008 2.879646 CTCCTATCCTACTGTCGTCCAC 59.120 54.545 0.00 0.00 0.00 4.02
906 4009 1.602851 CCTATCCTACTGTCGTCCACG 59.397 57.143 0.00 0.00 41.45 4.94
907 4010 2.286872 CTATCCTACTGTCGTCCACGT 58.713 52.381 0.00 0.00 40.80 4.49
908 4011 1.542492 ATCCTACTGTCGTCCACGTT 58.458 50.000 0.00 0.00 40.80 3.99
932 4037 1.131693 TCGGCGCGTGGTCTATATATG 59.868 52.381 8.43 0.00 0.00 1.78
937 4042 3.116300 CGCGTGGTCTATATATGCATCC 58.884 50.000 0.19 0.00 0.00 3.51
987 4093 5.163395 ACACCAAAACCATTCAACCGTATTT 60.163 36.000 0.00 0.00 0.00 1.40
1265 4389 0.317479 ATATACTTCGTGCTCCCCGC 59.683 55.000 0.00 0.00 39.77 6.13
1389 4513 2.034879 CATCAGGAAGGTGCGCGTT 61.035 57.895 8.43 4.63 0.00 4.84
1488 4612 2.563179 GGAGTACTCTGTGAAAGCCTCA 59.437 50.000 21.88 0.00 0.00 3.86
1496 4620 3.582647 TCTGTGAAAGCCTCAGGTAATCA 59.417 43.478 0.00 0.00 37.09 2.57
1525 4649 2.260869 GGCAAGAAAGCTGCCGTGA 61.261 57.895 0.00 0.00 39.06 4.35
1559 4683 2.029288 CGAAGAAGGCGCTCAAGCA 61.029 57.895 7.64 0.00 42.21 3.91
1584 4708 1.162800 GCACCATCGAAGAGGATGCC 61.163 60.000 8.68 0.00 43.16 4.40
1703 4836 1.732117 TTTTTACTCCCTCCGTCCCA 58.268 50.000 0.00 0.00 0.00 4.37
1704 4837 1.961133 TTTTACTCCCTCCGTCCCAT 58.039 50.000 0.00 0.00 0.00 4.00
1705 4838 2.852714 TTTACTCCCTCCGTCCCATA 57.147 50.000 0.00 0.00 0.00 2.74
1706 4839 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
1707 4840 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
1708 4841 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
1709 4842 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1710 4843 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1711 4844 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1712 4845 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1713 4846 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1714 4847 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
1715 4848 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
1716 4849 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
1717 4850 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
1718 4851 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
1719 4852 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
1720 4853 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
1721 4854 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
1722 4855 8.066000 CCGTCCCATAATATAAGAACGTTTTTC 58.934 37.037 7.42 0.00 0.00 2.29
1723 4856 8.605746 CGTCCCATAATATAAGAACGTTTTTCA 58.394 33.333 7.42 0.00 0.00 2.69
1735 4868 8.570096 AAGAACGTTTTTCAAATTAACCTAGC 57.430 30.769 0.46 0.00 0.00 3.42
1736 4869 7.937649 AGAACGTTTTTCAAATTAACCTAGCT 58.062 30.769 0.46 0.00 0.00 3.32
1737 4870 8.410912 AGAACGTTTTTCAAATTAACCTAGCTT 58.589 29.630 0.46 0.00 0.00 3.74
1738 4871 7.924103 ACGTTTTTCAAATTAACCTAGCTTG 57.076 32.000 0.00 0.00 0.00 4.01
1739 4872 7.708998 ACGTTTTTCAAATTAACCTAGCTTGA 58.291 30.769 0.00 0.00 0.00 3.02
1740 4873 8.192110 ACGTTTTTCAAATTAACCTAGCTTGAA 58.808 29.630 0.00 0.00 34.95 2.69
1741 4874 9.026074 CGTTTTTCAAATTAACCTAGCTTGAAA 57.974 29.630 0.00 0.00 41.68 2.69
1767 4900 9.720769 AAATGTTCTTATATTATGGGACGTAGG 57.279 33.333 0.00 0.00 0.00 3.18
1768 4901 7.235935 TGTTCTTATATTATGGGACGTAGGG 57.764 40.000 0.00 0.00 0.00 3.53
1769 4902 7.011994 TGTTCTTATATTATGGGACGTAGGGA 58.988 38.462 0.00 0.00 0.00 4.20
1846 4982 7.675962 AGGAGTAGTATATGAGAATGTCGTC 57.324 40.000 0.00 0.00 0.00 4.20
1876 5012 6.432472 TCATTTGCCAGTGTACATGTATTTGA 59.568 34.615 9.18 0.00 0.00 2.69
1904 5377 4.718940 AAGGAAATTAAATGCGGTCCTG 57.281 40.909 0.00 0.00 35.66 3.86
2000 5550 0.182775 GGTCAAAGGTGGTGGTGAGT 59.817 55.000 0.00 0.00 0.00 3.41
2038 5588 6.995686 TGTTGAAGGAGCAAACTACAATCTTA 59.004 34.615 0.00 0.00 0.00 2.10
2046 5596 8.726988 GGAGCAAACTACAATCTTAACATGTTA 58.273 33.333 14.35 14.35 0.00 2.41
2078 5628 1.060266 CGAGCTTGATGAGTTGAAGCG 59.940 52.381 0.00 0.00 45.53 4.68
2082 5632 2.416747 CTTGATGAGTTGAAGCGTCCA 58.583 47.619 0.00 0.00 0.00 4.02
2127 5677 3.431626 CCAGACCTATTCGGCAACACATA 60.432 47.826 0.00 0.00 35.61 2.29
2144 5694 0.035881 ATATCATGGCAGCCACCTCG 59.964 55.000 19.10 5.92 35.80 4.63
2193 5747 0.981183 ACTTGCGTAATGGGGAGTCA 59.019 50.000 0.00 0.00 0.00 3.41
2197 5751 1.138859 TGCGTAATGGGGAGTCAGATG 59.861 52.381 0.00 0.00 0.00 2.90
2239 5795 7.206789 TGAATCATAAGGGTATTGTTCCTGA 57.793 36.000 0.00 0.00 32.95 3.86
2275 5831 5.061721 AGTCTTCCCCAACATTAACAACT 57.938 39.130 0.00 0.00 0.00 3.16
2276 5832 5.454966 AGTCTTCCCCAACATTAACAACTT 58.545 37.500 0.00 0.00 0.00 2.66
2277 5833 5.301805 AGTCTTCCCCAACATTAACAACTTG 59.698 40.000 0.00 0.00 0.00 3.16
2325 5882 2.033141 GCTCAAGCCTGGCTCACA 59.967 61.111 23.61 7.82 38.25 3.58
2363 5920 8.400947 CAGAAGGTTATTATTTCATGTGACTGG 58.599 37.037 0.00 0.00 0.00 4.00
2376 5933 6.009589 TCATGTGACTGGAAAACAATGGTAT 58.990 36.000 0.00 0.00 0.00 2.73
2380 5937 6.432783 TGTGACTGGAAAACAATGGTATAAGG 59.567 38.462 0.00 0.00 0.00 2.69
2381 5938 5.949354 TGACTGGAAAACAATGGTATAAGGG 59.051 40.000 0.00 0.00 0.00 3.95
2382 5939 4.709886 ACTGGAAAACAATGGTATAAGGGC 59.290 41.667 0.00 0.00 0.00 5.19
2383 5940 4.678256 TGGAAAACAATGGTATAAGGGCA 58.322 39.130 0.00 0.00 0.00 5.36
2384 5941 5.276440 TGGAAAACAATGGTATAAGGGCAT 58.724 37.500 0.00 0.00 0.00 4.40
2385 5942 5.362430 TGGAAAACAATGGTATAAGGGCATC 59.638 40.000 0.00 0.00 0.00 3.91
2386 5943 5.598417 GGAAAACAATGGTATAAGGGCATCT 59.402 40.000 0.00 0.00 0.00 2.90
2387 5944 6.239036 GGAAAACAATGGTATAAGGGCATCTC 60.239 42.308 0.00 0.00 0.00 2.75
2388 5945 4.373156 ACAATGGTATAAGGGCATCTCC 57.627 45.455 0.00 0.00 0.00 3.71
2389 5946 3.721575 ACAATGGTATAAGGGCATCTCCA 59.278 43.478 0.00 0.00 36.21 3.86
2390 5947 4.167892 ACAATGGTATAAGGGCATCTCCAA 59.832 41.667 0.00 0.00 36.21 3.53
2391 5948 3.857157 TGGTATAAGGGCATCTCCAAC 57.143 47.619 0.00 0.00 36.21 3.77
2392 5949 3.119319 TGGTATAAGGGCATCTCCAACA 58.881 45.455 0.00 0.00 36.21 3.33
2393 5950 3.118038 TGGTATAAGGGCATCTCCAACAC 60.118 47.826 0.00 0.00 36.21 3.32
2394 5951 2.736670 ATAAGGGCATCTCCAACACC 57.263 50.000 0.00 0.00 36.21 4.16
2395 5952 0.251916 TAAGGGCATCTCCAACACCG 59.748 55.000 0.00 0.00 36.21 4.94
2396 5953 1.488705 AAGGGCATCTCCAACACCGA 61.489 55.000 0.00 0.00 36.21 4.69
2397 5954 1.745489 GGGCATCTCCAACACCGAC 60.745 63.158 0.00 0.00 36.21 4.79
2398 5955 1.745489 GGCATCTCCAACACCGACC 60.745 63.158 0.00 0.00 34.01 4.79
2399 5956 1.003839 GCATCTCCAACACCGACCA 60.004 57.895 0.00 0.00 0.00 4.02
2400 5957 1.021390 GCATCTCCAACACCGACCAG 61.021 60.000 0.00 0.00 0.00 4.00
2401 5958 0.321671 CATCTCCAACACCGACCAGT 59.678 55.000 0.00 0.00 0.00 4.00
2402 5959 1.548719 CATCTCCAACACCGACCAGTA 59.451 52.381 0.00 0.00 0.00 2.74
2403 5960 1.707106 TCTCCAACACCGACCAGTAA 58.293 50.000 0.00 0.00 0.00 2.24
2404 5961 2.040939 TCTCCAACACCGACCAGTAAA 58.959 47.619 0.00 0.00 0.00 2.01
2405 5962 2.140717 CTCCAACACCGACCAGTAAAC 58.859 52.381 0.00 0.00 0.00 2.01
2406 5963 1.202675 TCCAACACCGACCAGTAAACC 60.203 52.381 0.00 0.00 0.00 3.27
2407 5964 1.202722 CCAACACCGACCAGTAAACCT 60.203 52.381 0.00 0.00 0.00 3.50
2408 5965 2.140717 CAACACCGACCAGTAAACCTC 58.859 52.381 0.00 0.00 0.00 3.85
2409 5966 0.683412 ACACCGACCAGTAAACCTCC 59.317 55.000 0.00 0.00 0.00 4.30
2410 5967 0.036671 CACCGACCAGTAAACCTCCC 60.037 60.000 0.00 0.00 0.00 4.30
2411 5968 1.217244 CCGACCAGTAAACCTCCCG 59.783 63.158 0.00 0.00 0.00 5.14
2412 5969 1.447314 CGACCAGTAAACCTCCCGC 60.447 63.158 0.00 0.00 0.00 6.13
2413 5970 1.675219 GACCAGTAAACCTCCCGCA 59.325 57.895 0.00 0.00 0.00 5.69
2414 5971 0.035739 GACCAGTAAACCTCCCGCAA 59.964 55.000 0.00 0.00 0.00 4.85
2415 5972 0.250597 ACCAGTAAACCTCCCGCAAC 60.251 55.000 0.00 0.00 0.00 4.17
2416 5973 0.036306 CCAGTAAACCTCCCGCAACT 59.964 55.000 0.00 0.00 0.00 3.16
2417 5974 1.156736 CAGTAAACCTCCCGCAACTG 58.843 55.000 0.00 0.00 0.00 3.16
2418 5975 0.763035 AGTAAACCTCCCGCAACTGT 59.237 50.000 0.00 0.00 0.00 3.55
2419 5976 1.142262 AGTAAACCTCCCGCAACTGTT 59.858 47.619 0.00 0.00 0.00 3.16
2420 5977 1.534163 GTAAACCTCCCGCAACTGTTC 59.466 52.381 0.00 0.00 0.00 3.18
2421 5978 0.106918 AAACCTCCCGCAACTGTTCA 60.107 50.000 0.00 0.00 0.00 3.18
2422 5979 0.535102 AACCTCCCGCAACTGTTCAG 60.535 55.000 0.00 0.00 0.00 3.02
2423 5980 1.371183 CCTCCCGCAACTGTTCAGA 59.629 57.895 6.83 0.00 0.00 3.27
2424 5981 0.951040 CCTCCCGCAACTGTTCAGAC 60.951 60.000 6.83 0.00 0.00 3.51
2425 5982 0.951040 CTCCCGCAACTGTTCAGACC 60.951 60.000 6.83 0.00 0.00 3.85
2426 5983 2.317609 CCCGCAACTGTTCAGACCG 61.318 63.158 6.83 5.87 0.00 4.79
2427 5984 1.594293 CCGCAACTGTTCAGACCGT 60.594 57.895 6.83 0.00 0.00 4.83
2428 5985 1.564622 CGCAACTGTTCAGACCGTG 59.435 57.895 6.83 1.20 0.00 4.94
2429 5986 1.831389 CGCAACTGTTCAGACCGTGG 61.831 60.000 6.83 0.00 0.00 4.94
2430 5987 0.531974 GCAACTGTTCAGACCGTGGA 60.532 55.000 6.83 0.00 0.00 4.02
2431 5988 1.948104 CAACTGTTCAGACCGTGGAA 58.052 50.000 6.83 0.00 0.00 3.53
2432 5989 1.867233 CAACTGTTCAGACCGTGGAAG 59.133 52.381 6.83 0.00 0.00 3.46
2433 5990 1.120530 ACTGTTCAGACCGTGGAAGT 58.879 50.000 6.83 0.00 0.00 3.01
2434 5991 1.068741 ACTGTTCAGACCGTGGAAGTC 59.931 52.381 6.83 0.00 34.31 3.01
2435 5992 1.068588 CTGTTCAGACCGTGGAAGTCA 59.931 52.381 0.00 0.00 36.68 3.41
2436 5993 1.691976 TGTTCAGACCGTGGAAGTCAT 59.308 47.619 0.00 0.00 36.68 3.06
2437 5994 2.288825 TGTTCAGACCGTGGAAGTCATC 60.289 50.000 0.00 0.00 36.68 2.92
2449 6006 1.815003 GAAGTCATCCAAGGCTGTTGG 59.185 52.381 11.07 11.07 40.87 3.77
2450 6007 0.038744 AGTCATCCAAGGCTGTTGGG 59.961 55.000 15.69 0.00 39.96 4.12
2451 6008 0.251341 GTCATCCAAGGCTGTTGGGT 60.251 55.000 15.69 8.15 39.96 4.51
2452 6009 1.004277 GTCATCCAAGGCTGTTGGGTA 59.996 52.381 15.69 1.58 39.96 3.69
2453 6010 1.922447 TCATCCAAGGCTGTTGGGTAT 59.078 47.619 15.69 3.55 39.96 2.73
2454 6011 3.118038 GTCATCCAAGGCTGTTGGGTATA 60.118 47.826 15.69 1.60 39.96 1.47
2455 6012 3.721575 TCATCCAAGGCTGTTGGGTATAT 59.278 43.478 15.69 2.68 39.96 0.86
2456 6013 4.910913 TCATCCAAGGCTGTTGGGTATATA 59.089 41.667 15.69 0.00 39.96 0.86
2457 6014 5.371176 TCATCCAAGGCTGTTGGGTATATAA 59.629 40.000 15.69 0.00 39.96 0.98
2458 6015 5.043737 TCCAAGGCTGTTGGGTATATAAC 57.956 43.478 15.69 0.00 39.96 1.89
2475 6032 3.925090 CCCCGAGGTATGACCCGC 61.925 72.222 0.00 0.00 39.75 6.13
2476 6033 3.925090 CCCGAGGTATGACCCGCC 61.925 72.222 0.00 0.00 39.75 6.13
2477 6034 2.838225 CCGAGGTATGACCCGCCT 60.838 66.667 0.00 0.00 39.75 5.52
2478 6035 1.529948 CCGAGGTATGACCCGCCTA 60.530 63.158 0.00 0.00 39.75 3.93
2479 6036 1.524863 CCGAGGTATGACCCGCCTAG 61.525 65.000 0.00 0.00 39.75 3.02
2480 6037 1.524863 CGAGGTATGACCCGCCTAGG 61.525 65.000 3.67 3.67 39.75 3.02
2481 6038 0.178970 GAGGTATGACCCGCCTAGGA 60.179 60.000 14.75 0.00 45.00 2.94
2482 6039 0.178958 AGGTATGACCCGCCTAGGAG 60.179 60.000 14.75 9.83 45.00 3.69
2483 6040 1.186267 GGTATGACCCGCCTAGGAGG 61.186 65.000 23.96 23.96 45.00 4.30
2484 6041 0.178970 GTATGACCCGCCTAGGAGGA 60.179 60.000 31.43 13.39 45.00 3.71
2485 6042 0.112606 TATGACCCGCCTAGGAGGAG 59.887 60.000 31.43 22.44 45.00 3.69
2486 6043 3.228017 GACCCGCCTAGGAGGAGC 61.228 72.222 31.43 18.62 45.00 4.70
2487 6044 4.862823 ACCCGCCTAGGAGGAGCC 62.863 72.222 31.43 2.21 45.00 4.70
2491 6048 4.862823 GCCTAGGAGGAGCCGGGT 62.863 72.222 14.75 5.45 43.43 5.28
2492 6049 2.041819 CCTAGGAGGAGCCGGGTT 60.042 66.667 8.00 0.00 43.43 4.11
2493 6050 1.232216 CCTAGGAGGAGCCGGGTTA 59.768 63.158 8.00 0.00 43.43 2.85
2494 6051 0.178929 CCTAGGAGGAGCCGGGTTAT 60.179 60.000 8.00 0.00 43.43 1.89
2495 6052 1.076677 CCTAGGAGGAGCCGGGTTATA 59.923 57.143 8.00 0.00 43.43 0.98
2496 6053 2.169330 CTAGGAGGAGCCGGGTTATAC 58.831 57.143 8.00 0.00 43.43 1.47
2497 6054 0.471401 AGGAGGAGCCGGGTTATACC 60.471 60.000 8.00 3.89 43.43 2.73
2498 6055 0.761702 GGAGGAGCCGGGTTATACCA 60.762 60.000 8.00 0.00 41.02 3.25
2499 6056 1.349067 GAGGAGCCGGGTTATACCAT 58.651 55.000 8.00 0.00 41.02 3.55
2500 6057 1.697982 GAGGAGCCGGGTTATACCATT 59.302 52.381 8.00 0.00 41.02 3.16
2501 6058 1.420138 AGGAGCCGGGTTATACCATTG 59.580 52.381 8.00 0.00 41.02 2.82
2502 6059 1.544759 GGAGCCGGGTTATACCATTGG 60.545 57.143 8.00 0.00 41.02 3.16
2503 6060 1.142262 GAGCCGGGTTATACCATTGGT 59.858 52.381 13.94 13.94 41.02 3.67
2504 6061 1.133915 AGCCGGGTTATACCATTGGTG 60.134 52.381 18.83 0.00 41.02 4.17
2505 6062 1.134037 GCCGGGTTATACCATTGGTGA 60.134 52.381 18.83 3.37 41.02 4.02
2506 6063 2.567985 CCGGGTTATACCATTGGTGAC 58.432 52.381 18.83 13.13 41.02 3.67
2507 6064 2.171870 CCGGGTTATACCATTGGTGACT 59.828 50.000 18.83 5.70 41.02 3.41
2508 6065 3.463944 CGGGTTATACCATTGGTGACTC 58.536 50.000 18.83 12.46 41.02 3.36
2509 6066 3.118555 CGGGTTATACCATTGGTGACTCA 60.119 47.826 18.83 0.00 41.02 3.41
2510 6067 4.624364 CGGGTTATACCATTGGTGACTCAA 60.624 45.833 18.83 0.00 41.02 3.02
2511 6068 5.445964 GGGTTATACCATTGGTGACTCAAT 58.554 41.667 18.83 5.24 41.02 2.57
2512 6069 6.597562 GGGTTATACCATTGGTGACTCAATA 58.402 40.000 18.83 4.25 41.02 1.90
2513 6070 7.231467 GGGTTATACCATTGGTGACTCAATAT 58.769 38.462 18.83 3.80 41.02 1.28
2514 6071 7.174946 GGGTTATACCATTGGTGACTCAATATG 59.825 40.741 18.83 0.00 41.02 1.78
2515 6072 7.936847 GGTTATACCATTGGTGACTCAATATGA 59.063 37.037 18.83 0.00 38.42 2.15
2516 6073 9.337396 GTTATACCATTGGTGACTCAATATGAA 57.663 33.333 18.83 0.00 36.19 2.57
2517 6074 9.559732 TTATACCATTGGTGACTCAATATGAAG 57.440 33.333 18.83 0.00 36.19 3.02
2518 6075 6.065976 ACCATTGGTGACTCAATATGAAGA 57.934 37.500 7.76 0.00 35.78 2.87
2519 6076 6.484288 ACCATTGGTGACTCAATATGAAGAA 58.516 36.000 7.76 0.00 35.78 2.52
2520 6077 6.600822 ACCATTGGTGACTCAATATGAAGAAG 59.399 38.462 7.76 0.00 35.78 2.85
2521 6078 6.039047 CCATTGGTGACTCAATATGAAGAAGG 59.961 42.308 0.00 0.00 35.78 3.46
2522 6079 4.517285 TGGTGACTCAATATGAAGAAGGC 58.483 43.478 0.00 0.00 0.00 4.35
2523 6080 3.879892 GGTGACTCAATATGAAGAAGGCC 59.120 47.826 0.00 0.00 0.00 5.19
2524 6081 3.879892 GTGACTCAATATGAAGAAGGCCC 59.120 47.826 0.00 0.00 0.00 5.80
2525 6082 3.523157 TGACTCAATATGAAGAAGGCCCA 59.477 43.478 0.00 0.00 0.00 5.36
2526 6083 4.133078 GACTCAATATGAAGAAGGCCCAG 58.867 47.826 0.00 0.00 0.00 4.45
2527 6084 3.782523 ACTCAATATGAAGAAGGCCCAGA 59.217 43.478 0.00 0.00 0.00 3.86
2528 6085 4.414846 ACTCAATATGAAGAAGGCCCAGAT 59.585 41.667 0.00 0.00 0.00 2.90
2529 6086 5.608437 ACTCAATATGAAGAAGGCCCAGATA 59.392 40.000 0.00 0.00 0.00 1.98
2530 6087 6.119240 TCAATATGAAGAAGGCCCAGATAG 57.881 41.667 0.00 0.00 0.00 2.08
2531 6088 5.013495 TCAATATGAAGAAGGCCCAGATAGG 59.987 44.000 0.00 0.00 37.03 2.57
2532 6089 2.270434 TGAAGAAGGCCCAGATAGGT 57.730 50.000 0.00 0.00 34.66 3.08
2533 6090 2.119495 TGAAGAAGGCCCAGATAGGTC 58.881 52.381 0.00 0.00 34.66 3.85
2534 6091 1.418264 GAAGAAGGCCCAGATAGGTCC 59.582 57.143 0.00 0.00 34.66 4.46
2535 6092 0.343372 AGAAGGCCCAGATAGGTCCA 59.657 55.000 0.00 0.00 34.66 4.02
2536 6093 1.213296 GAAGGCCCAGATAGGTCCAA 58.787 55.000 0.00 0.00 34.66 3.53
2537 6094 1.141858 GAAGGCCCAGATAGGTCCAAG 59.858 57.143 0.00 0.00 34.66 3.61
2538 6095 0.343372 AGGCCCAGATAGGTCCAAGA 59.657 55.000 0.00 0.00 34.66 3.02
2539 6096 1.213296 GGCCCAGATAGGTCCAAGAA 58.787 55.000 0.00 0.00 34.66 2.52
2540 6097 1.141858 GGCCCAGATAGGTCCAAGAAG 59.858 57.143 0.00 0.00 34.66 2.85
2541 6098 2.119495 GCCCAGATAGGTCCAAGAAGA 58.881 52.381 0.00 0.00 34.66 2.87
2542 6099 2.708325 GCCCAGATAGGTCCAAGAAGAT 59.292 50.000 0.00 0.00 34.66 2.40
2543 6100 3.495806 GCCCAGATAGGTCCAAGAAGATG 60.496 52.174 0.00 0.00 34.66 2.90
2544 6101 3.969976 CCCAGATAGGTCCAAGAAGATGA 59.030 47.826 0.00 0.00 34.66 2.92
2545 6102 4.410228 CCCAGATAGGTCCAAGAAGATGAA 59.590 45.833 0.00 0.00 34.66 2.57
2546 6103 5.363939 CCAGATAGGTCCAAGAAGATGAAC 58.636 45.833 0.00 0.00 0.00 3.18
2547 6104 5.104776 CCAGATAGGTCCAAGAAGATGAACA 60.105 44.000 0.00 0.00 0.00 3.18
2548 6105 6.409005 CCAGATAGGTCCAAGAAGATGAACAT 60.409 42.308 0.00 0.00 0.00 2.71
2549 6106 6.482641 CAGATAGGTCCAAGAAGATGAACATG 59.517 42.308 0.00 0.00 0.00 3.21
2550 6107 4.916041 AGGTCCAAGAAGATGAACATGA 57.084 40.909 0.00 0.00 0.00 3.07
2551 6108 5.246981 AGGTCCAAGAAGATGAACATGAA 57.753 39.130 0.00 0.00 0.00 2.57
2552 6109 5.251764 AGGTCCAAGAAGATGAACATGAAG 58.748 41.667 0.00 0.00 0.00 3.02
2553 6110 5.013495 AGGTCCAAGAAGATGAACATGAAGA 59.987 40.000 0.00 0.00 0.00 2.87
2554 6111 5.123027 GGTCCAAGAAGATGAACATGAAGAC 59.877 44.000 0.00 0.00 0.00 3.01
2555 6112 5.936956 GTCCAAGAAGATGAACATGAAGACT 59.063 40.000 0.00 0.00 0.00 3.24
2556 6113 5.936372 TCCAAGAAGATGAACATGAAGACTG 59.064 40.000 0.00 0.00 0.00 3.51
2557 6114 5.123502 CCAAGAAGATGAACATGAAGACTGG 59.876 44.000 0.00 0.00 0.00 4.00
2558 6115 4.260170 AGAAGATGAACATGAAGACTGGC 58.740 43.478 0.00 0.00 0.00 4.85
2559 6116 2.625737 AGATGAACATGAAGACTGGCG 58.374 47.619 0.00 0.00 0.00 5.69
2560 6117 1.667724 GATGAACATGAAGACTGGCGG 59.332 52.381 0.00 0.00 0.00 6.13
2561 6118 0.955428 TGAACATGAAGACTGGCGGC 60.955 55.000 0.00 0.00 0.00 6.53
2562 6119 1.970917 GAACATGAAGACTGGCGGCG 61.971 60.000 0.51 0.51 0.00 6.46
2563 6120 3.197790 CATGAAGACTGGCGGCGG 61.198 66.667 17.49 17.49 0.00 6.13
2567 6124 3.659089 GAAGACTGGCGGCGGCTTA 62.659 63.158 33.21 14.28 39.81 3.09
2568 6125 3.952628 AAGACTGGCGGCGGCTTAC 62.953 63.158 33.21 22.22 39.81 2.34
2569 6126 4.752879 GACTGGCGGCGGCTTACA 62.753 66.667 33.21 13.10 39.81 2.41
2570 6127 4.323477 ACTGGCGGCGGCTTACAA 62.323 61.111 33.21 12.69 39.81 2.41
2571 6128 3.499737 CTGGCGGCGGCTTACAAG 61.500 66.667 33.21 18.51 39.81 3.16
2574 6131 3.799755 GCGGCGGCTTACAAGGTG 61.800 66.667 9.78 0.00 35.83 4.00
2575 6132 3.124921 CGGCGGCTTACAAGGTGG 61.125 66.667 7.61 0.00 0.00 4.61
2576 6133 2.750237 GGCGGCTTACAAGGTGGG 60.750 66.667 0.00 0.00 0.00 4.61
2577 6134 3.440415 GCGGCTTACAAGGTGGGC 61.440 66.667 0.00 0.00 0.00 5.36
2578 6135 2.351276 CGGCTTACAAGGTGGGCT 59.649 61.111 0.00 0.00 0.00 5.19
2579 6136 1.303317 CGGCTTACAAGGTGGGCTT 60.303 57.895 0.00 0.00 0.00 4.35
2580 6137 1.586154 CGGCTTACAAGGTGGGCTTG 61.586 60.000 0.00 0.00 37.77 4.01
2581 6138 0.539669 GGCTTACAAGGTGGGCTTGT 60.540 55.000 0.00 0.00 45.60 3.16
2582 6139 1.328279 GCTTACAAGGTGGGCTTGTT 58.672 50.000 0.00 0.00 41.66 2.83
2583 6140 1.000274 GCTTACAAGGTGGGCTTGTTG 60.000 52.381 0.00 0.00 41.66 3.33
2584 6141 2.582052 CTTACAAGGTGGGCTTGTTGA 58.418 47.619 0.00 0.00 41.66 3.18
2585 6142 2.738587 TACAAGGTGGGCTTGTTGAA 57.261 45.000 0.00 0.00 41.66 2.69
2586 6143 1.402787 ACAAGGTGGGCTTGTTGAAG 58.597 50.000 0.00 0.00 41.66 3.02
2587 6144 0.675633 CAAGGTGGGCTTGTTGAAGG 59.324 55.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 52 4.089341 CGTATCGTATTCGTATCAGCCTG 58.911 47.826 0.00 0.00 38.33 4.85
66 78 4.436998 GGTGCGCGCTCCACTAGT 62.437 66.667 39.00 0.00 33.78 2.57
170 183 1.670811 GTTCTCTCTCTCTCGCCTCTG 59.329 57.143 0.00 0.00 0.00 3.35
171 184 1.408266 GGTTCTCTCTCTCTCGCCTCT 60.408 57.143 0.00 0.00 0.00 3.69
173 186 0.395173 GGGTTCTCTCTCTCTCGCCT 60.395 60.000 0.00 0.00 0.00 5.52
174 187 1.720694 CGGGTTCTCTCTCTCTCGCC 61.721 65.000 0.00 0.00 0.00 5.54
176 189 1.725066 GCGGGTTCTCTCTCTCTCG 59.275 63.158 0.00 0.00 0.00 4.04
208 230 4.778143 ATTGACTCACGGGCCCGC 62.778 66.667 43.58 26.98 44.19 6.13
290 354 2.843701 ACGACCTACTCCCACGTATAG 58.156 52.381 0.00 0.00 35.49 1.31
432 522 0.254462 GAGGGAGCCAGGAAAGAAGG 59.746 60.000 0.00 0.00 0.00 3.46
488 593 2.151202 CATGTAAAACAGCACCTCGGT 58.849 47.619 0.00 0.00 0.00 4.69
499 604 0.725117 CCCGCCTCGTCATGTAAAAC 59.275 55.000 0.00 0.00 0.00 2.43
530 635 3.170362 CCTGGCCTCTCACCCAAA 58.830 61.111 3.32 0.00 0.00 3.28
536 641 0.677731 CAAATTCGCCTGGCCTCTCA 60.678 55.000 14.12 0.00 0.00 3.27
544 649 0.597568 TCAAGCCACAAATTCGCCTG 59.402 50.000 0.00 0.00 0.00 4.85
559 665 8.548721 AGTTTATTTCGTAGTCAAACTGTCAAG 58.451 33.333 0.00 0.00 37.87 3.02
565 671 9.865321 TGCTATAGTTTATTTCGTAGTCAAACT 57.135 29.630 0.84 0.00 41.15 2.66
573 679 8.697067 GCGAATCTTGCTATAGTTTATTTCGTA 58.303 33.333 20.08 0.00 35.83 3.43
574 680 7.307219 GGCGAATCTTGCTATAGTTTATTTCGT 60.307 37.037 20.08 0.00 35.83 3.85
575 681 7.010023 GGCGAATCTTGCTATAGTTTATTTCG 58.990 38.462 17.31 17.31 36.32 3.46
580 690 5.163343 ACCTGGCGAATCTTGCTATAGTTTA 60.163 40.000 0.84 0.00 0.00 2.01
615 727 4.744631 CCGTGGCCAGAAAATATATTTTGC 59.255 41.667 24.60 20.49 39.86 3.68
643 757 7.232534 AGTTAACATTATTCCAAAGTCAGCCAA 59.767 33.333 8.61 0.00 0.00 4.52
644 758 6.719370 AGTTAACATTATTCCAAAGTCAGCCA 59.281 34.615 8.61 0.00 0.00 4.75
694 3439 7.918562 GCAAATCTTGTTTTCTTGTACTACCAA 59.081 33.333 0.00 0.00 0.00 3.67
698 3443 9.515020 CAAAGCAAATCTTGTTTTCTTGTACTA 57.485 29.630 0.00 0.00 41.25 1.82
699 3444 7.492344 CCAAAGCAAATCTTGTTTTCTTGTACT 59.508 33.333 0.00 0.00 41.25 2.73
700 3445 7.621102 CCAAAGCAAATCTTGTTTTCTTGTAC 58.379 34.615 0.00 0.00 41.25 2.90
701 3446 6.257630 GCCAAAGCAAATCTTGTTTTCTTGTA 59.742 34.615 0.00 0.00 41.25 2.41
702 3447 5.065090 GCCAAAGCAAATCTTGTTTTCTTGT 59.935 36.000 0.00 0.00 41.25 3.16
703 3448 5.295045 AGCCAAAGCAAATCTTGTTTTCTTG 59.705 36.000 0.00 0.00 41.25 3.02
704 3449 5.430886 AGCCAAAGCAAATCTTGTTTTCTT 58.569 33.333 0.00 0.00 41.25 2.52
718 3463 2.346766 TCTTGTCTTGAGCCAAAGCA 57.653 45.000 0.00 0.00 43.56 3.91
719 3464 3.715628 TTTCTTGTCTTGAGCCAAAGC 57.284 42.857 0.00 0.00 40.32 3.51
720 3465 7.202526 TGTTTATTTCTTGTCTTGAGCCAAAG 58.797 34.615 0.00 0.00 0.00 2.77
723 3468 6.707440 TTGTTTATTTCTTGTCTTGAGCCA 57.293 33.333 0.00 0.00 0.00 4.75
725 3470 7.425606 TCCTTTGTTTATTTCTTGTCTTGAGC 58.574 34.615 0.00 0.00 0.00 4.26
726 3471 8.624776 ACTCCTTTGTTTATTTCTTGTCTTGAG 58.375 33.333 0.00 0.00 0.00 3.02
727 3472 8.519799 ACTCCTTTGTTTATTTCTTGTCTTGA 57.480 30.769 0.00 0.00 0.00 3.02
728 3473 7.862873 GGACTCCTTTGTTTATTTCTTGTCTTG 59.137 37.037 0.00 0.00 0.00 3.02
729 3474 7.780271 AGGACTCCTTTGTTTATTTCTTGTCTT 59.220 33.333 0.00 0.00 0.00 3.01
730 3475 7.290813 AGGACTCCTTTGTTTATTTCTTGTCT 58.709 34.615 0.00 0.00 0.00 3.41
731 3476 7.308649 GGAGGACTCCTTTGTTTATTTCTTGTC 60.309 40.741 11.09 0.00 46.16 3.18
732 3477 6.490381 GGAGGACTCCTTTGTTTATTTCTTGT 59.510 38.462 11.09 0.00 46.16 3.16
758 3511 2.567169 TCAGTTTCTCATGGTGACGGAT 59.433 45.455 0.00 0.00 0.00 4.18
785 3538 3.281727 TTTGTGAGCTTGTGACTCCTT 57.718 42.857 0.00 0.00 32.98 3.36
792 3547 6.198966 GGTTTTCTGTTATTTGTGAGCTTGTG 59.801 38.462 0.00 0.00 0.00 3.33
803 3560 5.147767 AGCTCCCTTGGTTTTCTGTTATTT 58.852 37.500 0.00 0.00 0.00 1.40
835 3593 9.739786 CTGGAAACGAATTAAATTAAAATGCAC 57.260 29.630 0.00 0.00 0.00 4.57
846 3605 7.278461 TGGTTGAATCTGGAAACGAATTAAA 57.722 32.000 0.00 0.00 0.00 1.52
862 3622 2.780010 CCTAGGAGGGACATGGTTGAAT 59.220 50.000 1.05 0.00 0.00 2.57
870 3973 1.547099 TAGGAGCCTAGGAGGGACAT 58.453 55.000 14.75 0.00 35.37 3.06
883 3986 1.881324 GGACGACAGTAGGATAGGAGC 59.119 57.143 0.00 0.00 0.00 4.70
888 3991 2.408271 ACGTGGACGACAGTAGGATA 57.592 50.000 6.12 0.00 43.02 2.59
889 3992 1.471684 GAACGTGGACGACAGTAGGAT 59.528 52.381 6.12 0.00 43.02 3.24
932 4037 2.174319 GGACGCGGAAAGAGGATGC 61.174 63.158 12.47 0.00 0.00 3.91
937 4042 1.801913 CGACTGGACGCGGAAAGAG 60.802 63.158 12.47 0.85 0.00 2.85
987 4093 2.841266 TGATCCCATCCACGGTTTTCTA 59.159 45.455 0.00 0.00 0.00 2.10
1092 4198 2.432628 GAGGTGGCGAACTCCGTG 60.433 66.667 1.65 0.00 41.15 4.94
1488 4612 2.561569 CCGATTTTCGCCTGATTACCT 58.438 47.619 0.00 0.00 38.82 3.08
1496 4620 1.200020 CTTTCTTGCCGATTTTCGCCT 59.800 47.619 0.00 0.00 38.82 5.52
1559 4683 0.175302 CTCTTCGATGGTGCTGAGCT 59.825 55.000 5.83 0.00 0.00 4.09
1584 4708 4.105486 TCTTATGAGCATTTCGTCACTCG 58.895 43.478 0.00 0.00 41.41 4.18
1658 4787 8.757164 AAAGACGCCAAAAATCCTATAAAAAG 57.243 30.769 0.00 0.00 0.00 2.27
1689 4822 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1690 4823 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
1691 4824 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
1692 4825 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
1693 4826 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
1694 4827 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
1695 4828 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
1696 4829 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
1697 4830 8.605746 TGAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
1709 4842 9.667989 GCTAGGTTAATTTGAAAAACGTTCTTA 57.332 29.630 0.00 0.00 0.00 2.10
1710 4843 8.410912 AGCTAGGTTAATTTGAAAAACGTTCTT 58.589 29.630 0.00 0.00 0.00 2.52
1711 4844 7.937649 AGCTAGGTTAATTTGAAAAACGTTCT 58.062 30.769 0.00 0.00 0.00 3.01
1712 4845 8.476925 CAAGCTAGGTTAATTTGAAAAACGTTC 58.523 33.333 6.90 0.00 0.00 3.95
1713 4846 8.192110 TCAAGCTAGGTTAATTTGAAAAACGTT 58.808 29.630 6.90 0.00 0.00 3.99
1714 4847 7.708998 TCAAGCTAGGTTAATTTGAAAAACGT 58.291 30.769 6.90 0.00 0.00 3.99
1715 4848 8.568732 TTCAAGCTAGGTTAATTTGAAAAACG 57.431 30.769 6.90 0.00 35.51 3.60
1741 4874 9.720769 CCTACGTCCCATAATATAAGAACATTT 57.279 33.333 0.00 0.00 0.00 2.32
1742 4875 8.319146 CCCTACGTCCCATAATATAAGAACATT 58.681 37.037 0.00 0.00 0.00 2.71
1743 4876 7.676893 TCCCTACGTCCCATAATATAAGAACAT 59.323 37.037 0.00 0.00 0.00 2.71
1744 4877 7.011994 TCCCTACGTCCCATAATATAAGAACA 58.988 38.462 0.00 0.00 0.00 3.18
1745 4878 7.178097 ACTCCCTACGTCCCATAATATAAGAAC 59.822 40.741 0.00 0.00 0.00 3.01
1746 4879 7.243824 ACTCCCTACGTCCCATAATATAAGAA 58.756 38.462 0.00 0.00 0.00 2.52
1747 4880 6.797707 ACTCCCTACGTCCCATAATATAAGA 58.202 40.000 0.00 0.00 0.00 2.10
1748 4881 8.763984 ATACTCCCTACGTCCCATAATATAAG 57.236 38.462 0.00 0.00 0.00 1.73
1751 4884 8.975295 GTTAATACTCCCTACGTCCCATAATAT 58.025 37.037 0.00 0.00 0.00 1.28
1752 4885 7.397192 GGTTAATACTCCCTACGTCCCATAATA 59.603 40.741 0.00 0.00 0.00 0.98
1753 4886 6.212187 GGTTAATACTCCCTACGTCCCATAAT 59.788 42.308 0.00 0.00 0.00 1.28
1754 4887 5.539955 GGTTAATACTCCCTACGTCCCATAA 59.460 44.000 0.00 0.00 0.00 1.90
1755 4888 5.079643 GGTTAATACTCCCTACGTCCCATA 58.920 45.833 0.00 0.00 0.00 2.74
1756 4889 3.899980 GGTTAATACTCCCTACGTCCCAT 59.100 47.826 0.00 0.00 0.00 4.00
1757 4890 3.299503 GGTTAATACTCCCTACGTCCCA 58.700 50.000 0.00 0.00 0.00 4.37
1758 4891 3.299503 TGGTTAATACTCCCTACGTCCC 58.700 50.000 0.00 0.00 0.00 4.46
1759 4892 5.541953 AATGGTTAATACTCCCTACGTCC 57.458 43.478 0.00 0.00 0.00 4.79
1760 4893 6.814043 AGAAATGGTTAATACTCCCTACGTC 58.186 40.000 0.00 0.00 0.00 4.34
1761 4894 6.803366 AGAAATGGTTAATACTCCCTACGT 57.197 37.500 0.00 0.00 0.00 3.57
1762 4895 6.482308 CCAAGAAATGGTTAATACTCCCTACG 59.518 42.308 0.00 0.00 44.85 3.51
1763 4896 7.803279 CCAAGAAATGGTTAATACTCCCTAC 57.197 40.000 0.00 0.00 44.85 3.18
1792 4925 4.141287 TGAATTTTCCTCACCAACATCGT 58.859 39.130 0.00 0.00 0.00 3.73
1793 4926 4.764679 TGAATTTTCCTCACCAACATCG 57.235 40.909 0.00 0.00 0.00 3.84
1835 4971 4.670221 GCAAATGAACCAGACGACATTCTC 60.670 45.833 0.00 0.00 32.84 2.87
1876 5012 7.547722 GGACCGCATTTAATTTCCTTTTGTTAT 59.452 33.333 0.00 0.00 0.00 1.89
1884 5020 3.697166 ACAGGACCGCATTTAATTTCCT 58.303 40.909 0.00 0.00 33.58 3.36
1973 5516 1.710809 ACCACCTTTGACCATTAGCCT 59.289 47.619 0.00 0.00 0.00 4.58
2011 5561 5.906113 TTGTAGTTTGCTCCTTCAACAAA 57.094 34.783 0.00 0.00 0.00 2.83
2013 5563 5.376625 AGATTGTAGTTTGCTCCTTCAACA 58.623 37.500 0.00 0.00 0.00 3.33
2038 5588 5.583457 GCTCGGTAATGTACCTTAACATGTT 59.417 40.000 16.68 16.68 46.81 2.71
2046 5596 4.161565 TCATCAAGCTCGGTAATGTACCTT 59.838 41.667 3.10 0.00 46.81 3.50
2056 5606 2.693069 CTTCAACTCATCAAGCTCGGT 58.307 47.619 0.00 0.00 0.00 4.69
2078 5628 1.671379 GGAACTGCCGGTCTTGGAC 60.671 63.158 1.90 0.00 0.00 4.02
2127 5677 2.191375 CGAGGTGGCTGCCATGAT 59.809 61.111 26.22 13.71 35.28 2.45
2144 5694 3.086818 ACGTTTATTTTGGCCACACAC 57.913 42.857 3.88 0.00 0.00 3.82
2197 5751 8.981724 ATGATTCATACATATTTTGCAGATGC 57.018 30.769 0.00 0.00 42.50 3.91
2239 5795 4.510205 GGGGAAGACTATAGCTGAGGATCT 60.510 50.000 0.00 0.00 34.92 2.75
2363 5920 6.239036 GGAGATGCCCTTATACCATTGTTTTC 60.239 42.308 0.00 0.00 0.00 2.29
2376 5933 0.251916 CGGTGTTGGAGATGCCCTTA 59.748 55.000 0.00 0.00 34.97 2.69
2380 5937 1.745489 GGTCGGTGTTGGAGATGCC 60.745 63.158 0.00 0.00 37.10 4.40
2381 5938 1.003839 TGGTCGGTGTTGGAGATGC 60.004 57.895 0.00 0.00 0.00 3.91
2382 5939 0.321671 ACTGGTCGGTGTTGGAGATG 59.678 55.000 0.00 0.00 0.00 2.90
2383 5940 1.933021 TACTGGTCGGTGTTGGAGAT 58.067 50.000 0.00 0.00 0.00 2.75
2384 5941 1.707106 TTACTGGTCGGTGTTGGAGA 58.293 50.000 0.00 0.00 0.00 3.71
2385 5942 2.140717 GTTTACTGGTCGGTGTTGGAG 58.859 52.381 0.00 0.00 0.00 3.86
2386 5943 1.202675 GGTTTACTGGTCGGTGTTGGA 60.203 52.381 0.00 0.00 0.00 3.53
2387 5944 1.202722 AGGTTTACTGGTCGGTGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
2388 5945 2.140717 GAGGTTTACTGGTCGGTGTTG 58.859 52.381 0.00 0.00 0.00 3.33
2389 5946 1.071228 GGAGGTTTACTGGTCGGTGTT 59.929 52.381 0.00 0.00 0.00 3.32
2390 5947 0.683412 GGAGGTTTACTGGTCGGTGT 59.317 55.000 0.00 0.00 0.00 4.16
2391 5948 0.036671 GGGAGGTTTACTGGTCGGTG 60.037 60.000 0.00 0.00 0.00 4.94
2392 5949 1.538687 CGGGAGGTTTACTGGTCGGT 61.539 60.000 0.00 0.00 0.00 4.69
2393 5950 1.217244 CGGGAGGTTTACTGGTCGG 59.783 63.158 0.00 0.00 0.00 4.79
2394 5951 1.447314 GCGGGAGGTTTACTGGTCG 60.447 63.158 0.00 0.00 0.00 4.79
2395 5952 0.035739 TTGCGGGAGGTTTACTGGTC 59.964 55.000 0.00 0.00 0.00 4.02
2396 5953 0.250597 GTTGCGGGAGGTTTACTGGT 60.251 55.000 0.00 0.00 0.00 4.00
2397 5954 0.036306 AGTTGCGGGAGGTTTACTGG 59.964 55.000 0.00 0.00 0.00 4.00
2398 5955 1.156736 CAGTTGCGGGAGGTTTACTG 58.843 55.000 0.00 0.00 0.00 2.74
2399 5956 0.763035 ACAGTTGCGGGAGGTTTACT 59.237 50.000 0.00 0.00 0.00 2.24
2400 5957 1.534163 GAACAGTTGCGGGAGGTTTAC 59.466 52.381 0.00 0.00 0.00 2.01
2401 5958 1.141254 TGAACAGTTGCGGGAGGTTTA 59.859 47.619 0.00 0.00 0.00 2.01
2402 5959 0.106918 TGAACAGTTGCGGGAGGTTT 60.107 50.000 0.00 0.00 0.00 3.27
2403 5960 0.535102 CTGAACAGTTGCGGGAGGTT 60.535 55.000 0.00 0.00 0.00 3.50
2404 5961 1.071471 CTGAACAGTTGCGGGAGGT 59.929 57.895 0.00 0.00 0.00 3.85
2405 5962 0.951040 GTCTGAACAGTTGCGGGAGG 60.951 60.000 0.00 0.00 0.00 4.30
2406 5963 0.951040 GGTCTGAACAGTTGCGGGAG 60.951 60.000 0.00 0.00 0.00 4.30
2407 5964 1.070786 GGTCTGAACAGTTGCGGGA 59.929 57.895 0.00 0.00 0.00 5.14
2408 5965 2.317609 CGGTCTGAACAGTTGCGGG 61.318 63.158 0.00 0.00 0.00 6.13
2409 5966 1.594293 ACGGTCTGAACAGTTGCGG 60.594 57.895 0.00 0.00 28.70 5.69
2410 5967 1.564622 CACGGTCTGAACAGTTGCG 59.435 57.895 0.00 0.00 30.93 4.85
2411 5968 0.531974 TCCACGGTCTGAACAGTTGC 60.532 55.000 0.00 0.00 30.93 4.17
2412 5969 1.867233 CTTCCACGGTCTGAACAGTTG 59.133 52.381 0.00 0.00 30.93 3.16
2413 5970 1.485066 ACTTCCACGGTCTGAACAGTT 59.515 47.619 1.73 0.00 30.93 3.16
2414 5971 1.068741 GACTTCCACGGTCTGAACAGT 59.931 52.381 1.73 0.00 33.83 3.55
2415 5972 1.068588 TGACTTCCACGGTCTGAACAG 59.931 52.381 0.00 0.00 35.04 3.16
2416 5973 1.116308 TGACTTCCACGGTCTGAACA 58.884 50.000 0.00 0.00 35.04 3.18
2417 5974 2.338500 GATGACTTCCACGGTCTGAAC 58.662 52.381 0.00 0.00 35.04 3.18
2418 5975 1.275291 GGATGACTTCCACGGTCTGAA 59.725 52.381 2.51 0.00 44.74 3.02
2419 5976 0.895530 GGATGACTTCCACGGTCTGA 59.104 55.000 2.51 0.00 44.74 3.27
2420 5977 3.442996 GGATGACTTCCACGGTCTG 57.557 57.895 2.51 0.00 44.74 3.51
2428 5985 1.815003 CAACAGCCTTGGATGACTTCC 59.185 52.381 12.16 0.30 45.69 3.46
2429 5986 1.815003 CCAACAGCCTTGGATGACTTC 59.185 52.381 12.16 0.00 42.06 3.01
2430 5987 1.548582 CCCAACAGCCTTGGATGACTT 60.549 52.381 12.16 0.00 42.06 3.01
2431 5988 0.038744 CCCAACAGCCTTGGATGACT 59.961 55.000 12.16 0.00 42.06 3.41
2432 5989 0.251341 ACCCAACAGCCTTGGATGAC 60.251 55.000 12.16 0.00 42.06 3.06
2433 5990 1.367346 TACCCAACAGCCTTGGATGA 58.633 50.000 12.16 0.00 42.06 2.92
2434 5991 2.442236 ATACCCAACAGCCTTGGATG 57.558 50.000 11.61 3.10 42.06 3.51
2435 5992 5.457633 GGTTATATACCCAACAGCCTTGGAT 60.458 44.000 11.61 0.00 42.06 3.41
2436 5993 4.141344 GGTTATATACCCAACAGCCTTGGA 60.141 45.833 11.61 0.00 42.06 3.53
2437 5994 4.142038 GGTTATATACCCAACAGCCTTGG 58.858 47.826 4.07 4.07 41.43 3.61
2449 6006 4.403752 GGTCATACCTCGGGGTTATATACC 59.596 50.000 15.04 10.39 44.73 2.73
2450 6007 4.403752 GGGTCATACCTCGGGGTTATATAC 59.596 50.000 15.04 4.31 44.73 1.47
2451 6008 4.613437 GGGTCATACCTCGGGGTTATATA 58.387 47.826 15.04 0.00 44.73 0.86
2452 6009 3.447950 GGGTCATACCTCGGGGTTATAT 58.552 50.000 15.04 0.00 44.73 0.86
2453 6010 2.818970 CGGGTCATACCTCGGGGTTATA 60.819 54.545 15.04 0.00 44.73 0.98
2454 6011 1.725803 GGGTCATACCTCGGGGTTAT 58.274 55.000 15.04 0.67 44.73 1.89
2455 6012 0.756442 CGGGTCATACCTCGGGGTTA 60.756 60.000 15.04 0.00 44.73 2.85
2456 6013 2.062177 CGGGTCATACCTCGGGGTT 61.062 63.158 15.04 0.00 44.73 4.11
2458 6015 3.925090 GCGGGTCATACCTCGGGG 61.925 72.222 0.00 0.00 38.64 5.73
2459 6016 2.989173 TAGGCGGGTCATACCTCGGG 62.989 65.000 8.39 0.00 38.64 5.14
2460 6017 1.524863 CTAGGCGGGTCATACCTCGG 61.525 65.000 8.39 0.00 38.64 4.63
2461 6018 1.524863 CCTAGGCGGGTCATACCTCG 61.525 65.000 0.00 0.00 38.64 4.63
2462 6019 0.178970 TCCTAGGCGGGTCATACCTC 60.179 60.000 2.96 0.00 38.64 3.85
2463 6020 0.178958 CTCCTAGGCGGGTCATACCT 60.179 60.000 2.96 0.00 38.64 3.08
2464 6021 1.186267 CCTCCTAGGCGGGTCATACC 61.186 65.000 10.23 0.00 37.60 2.73
2465 6022 0.178970 TCCTCCTAGGCGGGTCATAC 60.179 60.000 17.94 0.00 34.61 2.39
2466 6023 0.112606 CTCCTCCTAGGCGGGTCATA 59.887 60.000 17.94 0.00 34.61 2.15
2467 6024 1.152440 CTCCTCCTAGGCGGGTCAT 60.152 63.158 17.94 0.00 34.61 3.06
2468 6025 2.279073 CTCCTCCTAGGCGGGTCA 59.721 66.667 17.94 0.00 34.61 4.02
2469 6026 3.228017 GCTCCTCCTAGGCGGGTC 61.228 72.222 17.94 6.24 34.61 4.46
2470 6027 4.862823 GGCTCCTCCTAGGCGGGT 62.863 72.222 17.94 0.00 34.61 5.28
2474 6031 2.941563 TAACCCGGCTCCTCCTAGGC 62.942 65.000 2.96 0.00 34.61 3.93
2475 6032 0.178929 ATAACCCGGCTCCTCCTAGG 60.179 60.000 0.82 0.82 36.46 3.02
2476 6033 2.169330 GTATAACCCGGCTCCTCCTAG 58.831 57.143 0.00 0.00 0.00 3.02
2477 6034 1.203100 GGTATAACCCGGCTCCTCCTA 60.203 57.143 0.00 0.00 30.04 2.94
2478 6035 0.471401 GGTATAACCCGGCTCCTCCT 60.471 60.000 0.00 0.00 30.04 3.69
2479 6036 0.761702 TGGTATAACCCGGCTCCTCC 60.762 60.000 0.00 0.00 37.50 4.30
2480 6037 1.349067 ATGGTATAACCCGGCTCCTC 58.651 55.000 0.00 0.00 37.50 3.71
2481 6038 1.420138 CAATGGTATAACCCGGCTCCT 59.580 52.381 0.00 0.00 37.50 3.69
2482 6039 1.544759 CCAATGGTATAACCCGGCTCC 60.545 57.143 0.00 0.00 37.50 4.70
2483 6040 1.142262 ACCAATGGTATAACCCGGCTC 59.858 52.381 1.52 0.00 37.50 4.70
2484 6041 1.133915 CACCAATGGTATAACCCGGCT 60.134 52.381 3.85 0.00 37.50 5.52
2485 6042 1.134037 TCACCAATGGTATAACCCGGC 60.134 52.381 3.85 0.00 37.50 6.13
2486 6043 2.171870 AGTCACCAATGGTATAACCCGG 59.828 50.000 3.85 0.00 37.50 5.73
2487 6044 3.118555 TGAGTCACCAATGGTATAACCCG 60.119 47.826 3.85 0.00 37.50 5.28
2488 6045 4.497291 TGAGTCACCAATGGTATAACCC 57.503 45.455 3.85 0.00 37.50 4.11
2489 6046 7.936847 TCATATTGAGTCACCAATGGTATAACC 59.063 37.037 3.85 0.00 37.34 2.85
2490 6047 8.902540 TCATATTGAGTCACCAATGGTATAAC 57.097 34.615 3.85 4.09 37.34 1.89
2491 6048 9.559732 CTTCATATTGAGTCACCAATGGTATAA 57.440 33.333 3.85 0.00 37.34 0.98
2492 6049 8.933653 TCTTCATATTGAGTCACCAATGGTATA 58.066 33.333 3.85 0.00 37.34 1.47
2493 6050 7.805163 TCTTCATATTGAGTCACCAATGGTAT 58.195 34.615 3.85 0.00 37.34 2.73
2494 6051 7.194112 TCTTCATATTGAGTCACCAATGGTA 57.806 36.000 3.85 0.00 37.34 3.25
2495 6052 6.065976 TCTTCATATTGAGTCACCAATGGT 57.934 37.500 0.00 0.00 37.34 3.55
2496 6053 6.039047 CCTTCTTCATATTGAGTCACCAATGG 59.961 42.308 0.00 0.00 37.34 3.16
2497 6054 6.459298 GCCTTCTTCATATTGAGTCACCAATG 60.459 42.308 0.00 0.00 37.34 2.82
2498 6055 5.591877 GCCTTCTTCATATTGAGTCACCAAT 59.408 40.000 0.00 0.00 39.76 3.16
2499 6056 4.943705 GCCTTCTTCATATTGAGTCACCAA 59.056 41.667 0.00 0.00 0.00 3.67
2500 6057 4.517285 GCCTTCTTCATATTGAGTCACCA 58.483 43.478 0.00 0.00 0.00 4.17
2501 6058 3.879892 GGCCTTCTTCATATTGAGTCACC 59.120 47.826 0.00 0.00 0.00 4.02
2502 6059 3.879892 GGGCCTTCTTCATATTGAGTCAC 59.120 47.826 0.84 0.00 0.00 3.67
2503 6060 3.523157 TGGGCCTTCTTCATATTGAGTCA 59.477 43.478 4.53 0.00 0.00 3.41
2504 6061 4.133078 CTGGGCCTTCTTCATATTGAGTC 58.867 47.826 4.53 0.00 0.00 3.36
2505 6062 3.782523 TCTGGGCCTTCTTCATATTGAGT 59.217 43.478 4.53 0.00 0.00 3.41
2506 6063 4.428294 TCTGGGCCTTCTTCATATTGAG 57.572 45.455 4.53 0.00 0.00 3.02
2507 6064 5.013495 CCTATCTGGGCCTTCTTCATATTGA 59.987 44.000 4.53 0.00 0.00 2.57
2508 6065 5.222007 ACCTATCTGGGCCTTCTTCATATTG 60.222 44.000 4.53 0.00 41.11 1.90
2509 6066 4.916424 ACCTATCTGGGCCTTCTTCATATT 59.084 41.667 4.53 0.00 41.11 1.28
2510 6067 4.507342 ACCTATCTGGGCCTTCTTCATAT 58.493 43.478 4.53 0.00 41.11 1.78
2511 6068 3.904339 GACCTATCTGGGCCTTCTTCATA 59.096 47.826 4.53 0.00 38.13 2.15
2512 6069 2.708325 GACCTATCTGGGCCTTCTTCAT 59.292 50.000 4.53 0.00 38.13 2.57
2513 6070 2.119495 GACCTATCTGGGCCTTCTTCA 58.881 52.381 4.53 0.00 38.13 3.02
2514 6071 2.920724 GACCTATCTGGGCCTTCTTC 57.079 55.000 4.53 0.00 38.13 2.87
2521 6078 2.119495 TCTTCTTGGACCTATCTGGGC 58.881 52.381 0.00 0.00 45.48 5.36
2522 6079 3.969976 TCATCTTCTTGGACCTATCTGGG 59.030 47.826 0.00 0.00 41.11 4.45
2523 6080 5.104776 TGTTCATCTTCTTGGACCTATCTGG 60.105 44.000 0.00 0.00 42.93 3.86
2524 6081 5.982356 TGTTCATCTTCTTGGACCTATCTG 58.018 41.667 0.00 0.00 0.00 2.90
2525 6082 6.385176 TCATGTTCATCTTCTTGGACCTATCT 59.615 38.462 0.00 0.00 0.00 1.98
2526 6083 6.586344 TCATGTTCATCTTCTTGGACCTATC 58.414 40.000 0.00 0.00 0.00 2.08
2527 6084 6.566079 TCATGTTCATCTTCTTGGACCTAT 57.434 37.500 0.00 0.00 0.00 2.57
2528 6085 6.213397 TCTTCATGTTCATCTTCTTGGACCTA 59.787 38.462 0.00 0.00 0.00 3.08
2529 6086 4.916041 TCATGTTCATCTTCTTGGACCT 57.084 40.909 0.00 0.00 0.00 3.85
2530 6087 5.123027 GTCTTCATGTTCATCTTCTTGGACC 59.877 44.000 0.00 0.00 0.00 4.46
2531 6088 5.936956 AGTCTTCATGTTCATCTTCTTGGAC 59.063 40.000 0.00 0.00 0.00 4.02
2532 6089 5.936372 CAGTCTTCATGTTCATCTTCTTGGA 59.064 40.000 0.00 0.00 0.00 3.53
2533 6090 5.123502 CCAGTCTTCATGTTCATCTTCTTGG 59.876 44.000 0.00 0.00 0.00 3.61
2534 6091 5.391736 GCCAGTCTTCATGTTCATCTTCTTG 60.392 44.000 0.00 0.00 0.00 3.02
2535 6092 4.699257 GCCAGTCTTCATGTTCATCTTCTT 59.301 41.667 0.00 0.00 0.00 2.52
2536 6093 4.260170 GCCAGTCTTCATGTTCATCTTCT 58.740 43.478 0.00 0.00 0.00 2.85
2537 6094 3.063180 CGCCAGTCTTCATGTTCATCTTC 59.937 47.826 0.00 0.00 0.00 2.87
2538 6095 3.005554 CGCCAGTCTTCATGTTCATCTT 58.994 45.455 0.00 0.00 0.00 2.40
2539 6096 2.625737 CGCCAGTCTTCATGTTCATCT 58.374 47.619 0.00 0.00 0.00 2.90
2540 6097 1.667724 CCGCCAGTCTTCATGTTCATC 59.332 52.381 0.00 0.00 0.00 2.92
2541 6098 1.742761 CCGCCAGTCTTCATGTTCAT 58.257 50.000 0.00 0.00 0.00 2.57
2542 6099 0.955428 GCCGCCAGTCTTCATGTTCA 60.955 55.000 0.00 0.00 0.00 3.18
2543 6100 1.796796 GCCGCCAGTCTTCATGTTC 59.203 57.895 0.00 0.00 0.00 3.18
2544 6101 2.034879 CGCCGCCAGTCTTCATGTT 61.035 57.895 0.00 0.00 0.00 2.71
2545 6102 2.434884 CGCCGCCAGTCTTCATGT 60.435 61.111 0.00 0.00 0.00 3.21
2546 6103 3.197790 CCGCCGCCAGTCTTCATG 61.198 66.667 0.00 0.00 0.00 3.07
2549 6106 3.659089 TAAGCCGCCGCCAGTCTTC 62.659 63.158 0.00 0.00 34.57 2.87
2550 6107 3.702048 TAAGCCGCCGCCAGTCTT 61.702 61.111 0.00 0.00 34.57 3.01
2551 6108 4.452733 GTAAGCCGCCGCCAGTCT 62.453 66.667 0.00 0.00 34.57 3.24
2552 6109 4.752879 TGTAAGCCGCCGCCAGTC 62.753 66.667 0.00 0.00 34.57 3.51
2553 6110 4.323477 TTGTAAGCCGCCGCCAGT 62.323 61.111 0.00 0.00 34.57 4.00
2554 6111 3.499737 CTTGTAAGCCGCCGCCAG 61.500 66.667 0.00 0.00 34.57 4.85
2557 6114 3.799755 CACCTTGTAAGCCGCCGC 61.800 66.667 0.00 0.00 0.00 6.53
2558 6115 3.124921 CCACCTTGTAAGCCGCCG 61.125 66.667 0.00 0.00 0.00 6.46
2559 6116 2.750237 CCCACCTTGTAAGCCGCC 60.750 66.667 0.00 0.00 0.00 6.13
2560 6117 3.440415 GCCCACCTTGTAAGCCGC 61.440 66.667 0.00 0.00 0.00 6.53
2561 6118 1.303317 AAGCCCACCTTGTAAGCCG 60.303 57.895 0.00 0.00 30.99 5.52
2562 6119 2.267045 CAAGCCCACCTTGTAAGCC 58.733 57.895 0.00 0.00 44.74 4.35
2569 6126 1.115326 GCCTTCAACAAGCCCACCTT 61.115 55.000 0.00 0.00 0.00 3.50
2570 6127 1.531602 GCCTTCAACAAGCCCACCT 60.532 57.895 0.00 0.00 0.00 4.00
2571 6128 2.574018 GGCCTTCAACAAGCCCACC 61.574 63.158 0.00 0.00 26.68 4.61
2572 6129 2.574018 GGGCCTTCAACAAGCCCAC 61.574 63.158 14.33 0.00 41.85 4.61
2573 6130 2.203625 GGGCCTTCAACAAGCCCA 60.204 61.111 14.33 0.00 41.85 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.