Multiple sequence alignment - TraesCS7D01G389300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G389300 chr7D 100.000 2300 0 0 1 2300 504489214 504491513 0.000000e+00 4248.0
1 TraesCS7D01G389300 chr7D 88.046 435 39 11 2 432 260696667 260697092 9.480000e-139 503.0
2 TraesCS7D01G389300 chr7D 79.675 492 70 24 174 657 625301086 625300617 6.130000e-86 327.0
3 TraesCS7D01G389300 chr7D 80.415 434 60 15 231 658 54967963 54967549 7.980000e-80 307.0
4 TraesCS7D01G389300 chr7B 90.288 1040 52 23 691 1711 532424587 532425596 0.000000e+00 1315.0
5 TraesCS7D01G389300 chr7B 86.782 348 44 2 1952 2298 92059758 92060104 9.970000e-104 387.0
6 TraesCS7D01G389300 chr7B 86.782 348 44 2 1952 2298 488388372 488388026 9.970000e-104 387.0
7 TraesCS7D01G389300 chr7A 90.294 917 46 19 840 1750 572138095 572138974 0.000000e+00 1160.0
8 TraesCS7D01G389300 chr7A 86.649 382 41 8 443 823 572137735 572138107 4.570000e-112 414.0
9 TraesCS7D01G389300 chr7A 87.363 182 22 1 1776 1956 635371248 635371429 8.330000e-50 207.0
10 TraesCS7D01G389300 chr7A 86.339 183 23 2 1776 1956 11090549 11090367 5.010000e-47 198.0
11 TraesCS7D01G389300 chr7A 89.024 164 13 3 1781 1943 572140015 572140174 5.010000e-47 198.0
12 TraesCS7D01G389300 chr2D 89.885 435 35 9 2 432 97278103 97277674 3.340000e-153 551.0
13 TraesCS7D01G389300 chr4D 90.046 432 32 8 1 432 134664564 134664984 1.200000e-152 549.0
14 TraesCS7D01G389300 chr4D 88.584 438 34 13 2 431 333247049 333246620 3.390000e-143 518.0
15 TraesCS7D01G389300 chr4D 85.000 100 12 3 1666 1762 379337204 379337303 5.230000e-17 99.0
16 TraesCS7D01G389300 chrUn 88.684 433 42 6 2 432 97467054 97467481 2.620000e-144 521.0
17 TraesCS7D01G389300 chr6D 88.383 439 39 10 2 432 49868774 49868340 3.390000e-143 518.0
18 TraesCS7D01G389300 chr6D 87.844 436 45 6 2 435 158981302 158981731 2.640000e-139 505.0
19 TraesCS7D01G389300 chr2A 88.046 435 39 10 2 432 413486479 413486054 9.480000e-139 503.0
20 TraesCS7D01G389300 chr2A 80.457 481 65 14 174 649 766496795 766496339 7.870000e-90 340.0
21 TraesCS7D01G389300 chr2A 84.112 107 13 4 1678 1781 766143543 766143438 1.450000e-17 100.0
22 TraesCS7D01G389300 chr2A 84.848 99 10 4 1666 1762 726114335 726114240 6.760000e-16 95.3
23 TraesCS7D01G389300 chr3D 87.816 435 44 8 2 432 604663688 604664117 3.410000e-138 501.0
24 TraesCS7D01G389300 chr4B 87.679 349 39 4 1952 2298 168151471 168151125 9.900000e-109 403.0
25 TraesCS7D01G389300 chr4B 86.264 182 23 2 1776 1956 168151725 168151545 1.800000e-46 196.0
26 TraesCS7D01G389300 chr2B 87.069 348 43 2 1952 2298 450767055 450767401 2.140000e-105 392.0
27 TraesCS7D01G389300 chr2B 92.424 66 5 0 1678 1743 142739274 142739209 6.760000e-16 95.3
28 TraesCS7D01G389300 chr5D 86.782 348 44 2 1952 2298 435968380 435968726 9.970000e-104 387.0
29 TraesCS7D01G389300 chr5D 87.907 215 19 6 442 653 560221146 560220936 1.760000e-61 246.0
30 TraesCS7D01G389300 chr5D 86.264 182 24 1 1776 1956 53871764 53871583 1.800000e-46 196.0
31 TraesCS7D01G389300 chr5D 82.292 96 13 3 1669 1762 54941954 54942047 1.890000e-11 80.5
32 TraesCS7D01G389300 chr4A 86.782 348 44 2 1952 2298 640912234 640911888 9.970000e-104 387.0
33 TraesCS7D01G389300 chr4A 85.714 182 25 1 1776 1956 640912486 640912305 8.390000e-45 191.0
34 TraesCS7D01G389300 chr1B 86.782 348 44 2 1952 2298 129138474 129138128 9.970000e-104 387.0
35 TraesCS7D01G389300 chr6A 86.494 348 45 2 1952 2298 49742820 49743166 4.640000e-102 381.0
36 TraesCS7D01G389300 chr1D 86.207 348 46 2 1952 2298 373998976 373998630 2.160000e-100 375.0
37 TraesCS7D01G389300 chr1D 86.813 182 23 1 1776 1956 334455504 334455323 3.870000e-48 202.0
38 TraesCS7D01G389300 chr1D 85.417 96 8 4 1671 1762 481036262 481036169 6.760000e-16 95.3
39 TraesCS7D01G389300 chr5A 80.338 473 57 15 193 657 259075241 259075685 2.200000e-85 326.0
40 TraesCS7D01G389300 chr5A 85.903 227 26 4 433 657 109949112 109948890 1.060000e-58 237.0
41 TraesCS7D01G389300 chr5A 86.598 97 9 4 1668 1762 612342769 612342863 1.120000e-18 104.0
42 TraesCS7D01G389300 chr3B 88.235 221 22 4 440 658 783022258 783022476 6.300000e-66 261.0
43 TraesCS7D01G389300 chr3B 87.059 85 8 2 1667 1750 746851337 746851255 2.430000e-15 93.5
44 TraesCS7D01G389300 chr6B 86.463 229 26 5 430 657 234676837 234676613 1.760000e-61 246.0
45 TraesCS7D01G389300 chr6B 85.714 182 24 2 1776 1956 674374300 674374480 8.390000e-45 191.0
46 TraesCS7D01G389300 chr6B 85.714 98 10 3 1667 1762 467911734 467911829 1.450000e-17 100.0
47 TraesCS7D01G389300 chr1A 85.714 182 25 1 1776 1956 133200554 133200735 8.390000e-45 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G389300 chr7D 504489214 504491513 2299 False 4248.000000 4248 100.000000 1 2300 1 chr7D.!!$F2 2299
1 TraesCS7D01G389300 chr7B 532424587 532425596 1009 False 1315.000000 1315 90.288000 691 1711 1 chr7B.!!$F2 1020
2 TraesCS7D01G389300 chr7A 572137735 572140174 2439 False 590.666667 1160 88.655667 443 1943 3 chr7A.!!$F2 1500
3 TraesCS7D01G389300 chr4B 168151125 168151725 600 True 299.500000 403 86.971500 1776 2298 2 chr4B.!!$R1 522
4 TraesCS7D01G389300 chr4A 640911888 640912486 598 True 289.000000 387 86.248000 1776 2298 2 chr4A.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.0 20.43 0.0 41.02 5.01 F
564 566 0.038166 AATCTGAAGGAAGCGGCCAA 59.962 50.0 2.24 0.0 0.00 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1018 1023 0.103208 GCAATCCTGGACGACGAGAT 59.897 55.0 0.0 0.0 0.00 2.75 R
2242 3352 0.181587 TGTTGTTTTCCGCTGAGGGA 59.818 50.0 0.0 0.0 41.52 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.591643 TTTTATCTCTCAAACTGTGCGTC 57.408 39.130 0.00 0.00 0.00 5.19
24 25 2.086054 ATCTCTCAAACTGTGCGTCC 57.914 50.000 0.00 0.00 0.00 4.79
25 26 0.750249 TCTCTCAAACTGTGCGTCCA 59.250 50.000 0.00 0.00 0.00 4.02
26 27 1.138069 TCTCTCAAACTGTGCGTCCAA 59.862 47.619 0.00 0.00 0.00 3.53
27 28 1.939934 CTCTCAAACTGTGCGTCCAAA 59.060 47.619 0.00 0.00 0.00 3.28
28 29 2.549754 CTCTCAAACTGTGCGTCCAAAT 59.450 45.455 0.00 0.00 0.00 2.32
29 30 2.548057 TCTCAAACTGTGCGTCCAAATC 59.452 45.455 0.00 0.00 0.00 2.17
30 31 2.549754 CTCAAACTGTGCGTCCAAATCT 59.450 45.455 0.00 0.00 0.00 2.40
31 32 2.548057 TCAAACTGTGCGTCCAAATCTC 59.452 45.455 0.00 0.00 0.00 2.75
32 33 2.254546 AACTGTGCGTCCAAATCTCA 57.745 45.000 0.00 0.00 0.00 3.27
33 34 2.254546 ACTGTGCGTCCAAATCTCAA 57.745 45.000 0.00 0.00 0.00 3.02
34 35 2.571212 ACTGTGCGTCCAAATCTCAAA 58.429 42.857 0.00 0.00 0.00 2.69
35 36 3.149196 ACTGTGCGTCCAAATCTCAAAT 58.851 40.909 0.00 0.00 0.00 2.32
36 37 3.189287 ACTGTGCGTCCAAATCTCAAATC 59.811 43.478 0.00 0.00 0.00 2.17
37 38 2.159430 TGTGCGTCCAAATCTCAAATCG 59.841 45.455 0.00 0.00 0.00 3.34
38 39 2.159627 GTGCGTCCAAATCTCAAATCGT 59.840 45.455 0.00 0.00 0.00 3.73
39 40 2.811431 TGCGTCCAAATCTCAAATCGTT 59.189 40.909 0.00 0.00 0.00 3.85
40 41 3.252215 TGCGTCCAAATCTCAAATCGTTT 59.748 39.130 0.00 0.00 0.00 3.60
41 42 4.226761 GCGTCCAAATCTCAAATCGTTTT 58.773 39.130 0.00 0.00 0.00 2.43
42 43 4.679654 GCGTCCAAATCTCAAATCGTTTTT 59.320 37.500 0.00 0.00 0.00 1.94
43 44 5.854338 GCGTCCAAATCTCAAATCGTTTTTA 59.146 36.000 0.00 0.00 0.00 1.52
44 45 6.526674 GCGTCCAAATCTCAAATCGTTTTTAT 59.473 34.615 0.00 0.00 0.00 1.40
45 46 7.253321 GCGTCCAAATCTCAAATCGTTTTTATC 60.253 37.037 0.00 0.00 0.00 1.75
46 47 7.045612 CGTCCAAATCTCAAATCGTTTTTATCG 60.046 37.037 0.00 0.00 0.00 2.92
47 48 7.749126 GTCCAAATCTCAAATCGTTTTTATCGT 59.251 33.333 0.00 0.00 0.00 3.73
48 49 8.293867 TCCAAATCTCAAATCGTTTTTATCGTT 58.706 29.630 0.00 0.00 0.00 3.85
49 50 8.365210 CCAAATCTCAAATCGTTTTTATCGTTG 58.635 33.333 0.00 0.00 0.00 4.10
50 51 8.365210 CAAATCTCAAATCGTTTTTATCGTTGG 58.635 33.333 0.00 0.00 0.00 3.77
51 52 6.788684 TCTCAAATCGTTTTTATCGTTGGA 57.211 33.333 0.00 0.00 0.00 3.53
52 53 7.372451 TCTCAAATCGTTTTTATCGTTGGAT 57.628 32.000 0.00 0.00 36.65 3.41
53 54 7.812648 TCTCAAATCGTTTTTATCGTTGGATT 58.187 30.769 0.00 0.00 34.00 3.01
54 55 7.960738 TCTCAAATCGTTTTTATCGTTGGATTC 59.039 33.333 0.00 0.00 34.00 2.52
55 56 7.024768 TCAAATCGTTTTTATCGTTGGATTCC 58.975 34.615 0.00 0.00 34.00 3.01
56 57 6.753107 AATCGTTTTTATCGTTGGATTCCT 57.247 33.333 3.95 0.00 34.00 3.36
57 58 5.789710 TCGTTTTTATCGTTGGATTCCTC 57.210 39.130 3.95 0.00 34.00 3.71
58 59 4.327898 TCGTTTTTATCGTTGGATTCCTCG 59.672 41.667 3.95 9.06 34.00 4.63
59 60 4.340263 GTTTTTATCGTTGGATTCCTCGC 58.660 43.478 3.95 0.00 34.00 5.03
60 61 1.847818 TTATCGTTGGATTCCTCGCG 58.152 50.000 0.00 0.00 34.00 5.87
61 62 0.742505 TATCGTTGGATTCCTCGCGT 59.257 50.000 5.77 4.63 34.00 6.01
62 63 0.527817 ATCGTTGGATTCCTCGCGTC 60.528 55.000 5.77 0.00 0.00 5.19
63 64 2.505498 CGTTGGATTCCTCGCGTCG 61.505 63.158 5.77 0.00 0.00 5.12
64 65 1.153901 GTTGGATTCCTCGCGTCGA 60.154 57.895 5.77 0.00 0.00 4.20
75 76 2.341318 TCGCGTCGAGATCTTGAAAA 57.659 45.000 14.50 0.00 0.00 2.29
76 77 1.983605 TCGCGTCGAGATCTTGAAAAC 59.016 47.619 14.50 6.20 0.00 2.43
77 78 1.986378 CGCGTCGAGATCTTGAAAACT 59.014 47.619 14.50 0.00 0.00 2.66
78 79 3.120095 TCGCGTCGAGATCTTGAAAACTA 60.120 43.478 14.50 0.00 0.00 2.24
79 80 3.238570 CGCGTCGAGATCTTGAAAACTAG 59.761 47.826 14.50 3.90 0.00 2.57
80 81 4.413087 GCGTCGAGATCTTGAAAACTAGA 58.587 43.478 14.50 0.00 0.00 2.43
81 82 5.038033 GCGTCGAGATCTTGAAAACTAGAT 58.962 41.667 14.50 0.00 0.00 1.98
82 83 5.517054 GCGTCGAGATCTTGAAAACTAGATT 59.483 40.000 14.50 0.00 0.00 2.40
83 84 6.291374 GCGTCGAGATCTTGAAAACTAGATTC 60.291 42.308 14.50 1.28 0.00 2.52
84 85 6.197468 CGTCGAGATCTTGAAAACTAGATTCC 59.803 42.308 14.50 0.00 0.00 3.01
85 86 7.036220 GTCGAGATCTTGAAAACTAGATTCCA 58.964 38.462 14.50 0.00 0.00 3.53
86 87 7.708752 GTCGAGATCTTGAAAACTAGATTCCAT 59.291 37.037 14.50 0.00 0.00 3.41
87 88 7.708322 TCGAGATCTTGAAAACTAGATTCCATG 59.292 37.037 10.43 0.00 0.00 3.66
88 89 7.493971 CGAGATCTTGAAAACTAGATTCCATGT 59.506 37.037 3.60 0.00 0.00 3.21
89 90 9.171877 GAGATCTTGAAAACTAGATTCCATGTT 57.828 33.333 0.00 0.00 0.00 2.71
90 91 8.954350 AGATCTTGAAAACTAGATTCCATGTTG 58.046 33.333 0.00 0.00 0.00 3.33
91 92 8.868522 ATCTTGAAAACTAGATTCCATGTTGA 57.131 30.769 0.00 0.00 0.00 3.18
92 93 8.868522 TCTTGAAAACTAGATTCCATGTTGAT 57.131 30.769 0.00 0.00 0.00 2.57
93 94 9.958180 TCTTGAAAACTAGATTCCATGTTGATA 57.042 29.630 0.00 0.00 0.00 2.15
95 96 8.737168 TGAAAACTAGATTCCATGTTGATAGG 57.263 34.615 0.00 0.00 0.00 2.57
96 97 8.328758 TGAAAACTAGATTCCATGTTGATAGGT 58.671 33.333 0.00 0.00 0.00 3.08
97 98 9.178758 GAAAACTAGATTCCATGTTGATAGGTT 57.821 33.333 0.00 0.00 0.00 3.50
98 99 9.533831 AAAACTAGATTCCATGTTGATAGGTTT 57.466 29.630 0.00 0.00 0.00 3.27
99 100 9.533831 AAACTAGATTCCATGTTGATAGGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
100 101 8.511604 ACTAGATTCCATGTTGATAGGTTTTG 57.488 34.615 0.00 0.00 0.00 2.44
101 102 8.328758 ACTAGATTCCATGTTGATAGGTTTTGA 58.671 33.333 0.00 0.00 0.00 2.69
102 103 7.396540 AGATTCCATGTTGATAGGTTTTGAC 57.603 36.000 0.00 0.00 0.00 3.18
103 104 6.947733 AGATTCCATGTTGATAGGTTTTGACA 59.052 34.615 0.00 0.00 0.00 3.58
104 105 6.968263 TTCCATGTTGATAGGTTTTGACAA 57.032 33.333 0.00 0.00 0.00 3.18
105 106 6.968263 TCCATGTTGATAGGTTTTGACAAA 57.032 33.333 0.00 0.00 0.00 2.83
106 107 6.744112 TCCATGTTGATAGGTTTTGACAAAC 58.256 36.000 0.00 0.00 41.57 2.93
107 108 6.549364 TCCATGTTGATAGGTTTTGACAAACT 59.451 34.615 0.00 0.00 41.92 2.66
108 109 7.069331 TCCATGTTGATAGGTTTTGACAAACTT 59.931 33.333 0.00 0.00 41.92 2.66
109 110 7.710475 CCATGTTGATAGGTTTTGACAAACTTT 59.290 33.333 0.00 0.00 41.92 2.66
110 111 9.097257 CATGTTGATAGGTTTTGACAAACTTTT 57.903 29.630 0.00 0.00 41.92 2.27
111 112 9.665719 ATGTTGATAGGTTTTGACAAACTTTTT 57.334 25.926 0.00 0.00 41.92 1.94
170 171 3.781307 CCGAACCGGGAGCATGGA 61.781 66.667 6.32 0.00 44.15 3.41
171 172 2.267642 CGAACCGGGAGCATGGAA 59.732 61.111 6.32 0.00 0.00 3.53
172 173 1.153168 CGAACCGGGAGCATGGAAT 60.153 57.895 6.32 0.00 0.00 3.01
173 174 0.748005 CGAACCGGGAGCATGGAATT 60.748 55.000 6.32 0.00 0.00 2.17
174 175 1.474330 GAACCGGGAGCATGGAATTT 58.526 50.000 6.32 0.00 0.00 1.82
175 176 1.824852 GAACCGGGAGCATGGAATTTT 59.175 47.619 6.32 0.00 0.00 1.82
176 177 1.937191 ACCGGGAGCATGGAATTTTT 58.063 45.000 6.32 0.00 0.00 1.94
194 195 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
195 196 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
196 197 0.036306 TCCCTTTCCGAAAGAGGCAC 59.964 55.000 20.43 0.00 41.02 5.01
210 211 2.993008 GCACTCCCATGCCTCTCA 59.007 61.111 0.00 0.00 39.86 3.27
211 212 1.451028 GCACTCCCATGCCTCTCAC 60.451 63.158 0.00 0.00 39.86 3.51
212 213 1.153489 CACTCCCATGCCTCTCACG 60.153 63.158 0.00 0.00 0.00 4.35
213 214 1.305297 ACTCCCATGCCTCTCACGA 60.305 57.895 0.00 0.00 0.00 4.35
214 215 0.904865 ACTCCCATGCCTCTCACGAA 60.905 55.000 0.00 0.00 0.00 3.85
215 216 0.250234 CTCCCATGCCTCTCACGAAA 59.750 55.000 0.00 0.00 0.00 3.46
216 217 0.911769 TCCCATGCCTCTCACGAAAT 59.088 50.000 0.00 0.00 0.00 2.17
217 218 1.134401 TCCCATGCCTCTCACGAAATC 60.134 52.381 0.00 0.00 0.00 2.17
218 219 1.407299 CCCATGCCTCTCACGAAATCA 60.407 52.381 0.00 0.00 0.00 2.57
219 220 1.667724 CCATGCCTCTCACGAAATCAC 59.332 52.381 0.00 0.00 0.00 3.06
220 221 2.349590 CATGCCTCTCACGAAATCACA 58.650 47.619 0.00 0.00 0.00 3.58
221 222 2.542020 TGCCTCTCACGAAATCACAA 57.458 45.000 0.00 0.00 0.00 3.33
222 223 3.057969 TGCCTCTCACGAAATCACAAT 57.942 42.857 0.00 0.00 0.00 2.71
223 224 3.002791 TGCCTCTCACGAAATCACAATC 58.997 45.455 0.00 0.00 0.00 2.67
224 225 2.029728 GCCTCTCACGAAATCACAATCG 59.970 50.000 0.00 0.00 44.33 3.34
232 233 4.491554 CGAAATCACAATCGTGTCTCTC 57.508 45.455 0.00 0.00 44.02 3.20
233 234 3.001660 CGAAATCACAATCGTGTCTCTCG 60.002 47.826 0.00 0.00 44.02 4.04
234 235 1.914634 ATCACAATCGTGTCTCTCGC 58.085 50.000 0.00 0.00 44.02 5.03
235 236 0.596082 TCACAATCGTGTCTCTCGCA 59.404 50.000 0.00 0.00 44.02 5.10
236 237 0.987715 CACAATCGTGTCTCTCGCAG 59.012 55.000 0.00 0.00 38.41 5.18
237 238 0.881796 ACAATCGTGTCTCTCGCAGA 59.118 50.000 0.00 0.00 29.49 4.26
238 239 1.269723 ACAATCGTGTCTCTCGCAGAA 59.730 47.619 0.00 0.00 28.69 3.02
239 240 1.916651 CAATCGTGTCTCTCGCAGAAG 59.083 52.381 0.00 0.00 34.09 2.85
240 241 0.179150 ATCGTGTCTCTCGCAGAAGC 60.179 55.000 0.00 0.00 34.09 3.86
241 242 1.081175 CGTGTCTCTCGCAGAAGCA 60.081 57.895 0.00 0.00 42.27 3.91
242 243 0.664466 CGTGTCTCTCGCAGAAGCAA 60.664 55.000 0.00 0.00 42.27 3.91
243 244 1.502231 GTGTCTCTCGCAGAAGCAAA 58.498 50.000 0.00 0.00 42.27 3.68
244 245 1.867233 GTGTCTCTCGCAGAAGCAAAA 59.133 47.619 0.00 0.00 42.27 2.44
245 246 1.867233 TGTCTCTCGCAGAAGCAAAAC 59.133 47.619 0.00 0.00 42.27 2.43
246 247 1.195674 GTCTCTCGCAGAAGCAAAACC 59.804 52.381 0.00 0.00 42.27 3.27
247 248 0.164647 CTCTCGCAGAAGCAAAACCG 59.835 55.000 0.00 0.00 42.27 4.44
248 249 0.531974 TCTCGCAGAAGCAAAACCGT 60.532 50.000 0.00 0.00 42.27 4.83
249 250 0.384725 CTCGCAGAAGCAAAACCGTG 60.385 55.000 0.00 0.00 42.27 4.94
250 251 0.812014 TCGCAGAAGCAAAACCGTGA 60.812 50.000 0.00 0.00 42.27 4.35
251 252 0.657368 CGCAGAAGCAAAACCGTGAC 60.657 55.000 0.00 0.00 42.27 3.67
252 253 0.663153 GCAGAAGCAAAACCGTGACT 59.337 50.000 0.00 0.00 41.58 3.41
253 254 1.334149 GCAGAAGCAAAACCGTGACTC 60.334 52.381 0.00 0.00 41.58 3.36
254 255 2.213499 CAGAAGCAAAACCGTGACTCT 58.787 47.619 0.00 0.00 0.00 3.24
255 256 2.221981 CAGAAGCAAAACCGTGACTCTC 59.778 50.000 0.00 0.00 0.00 3.20
256 257 2.158957 AGAAGCAAAACCGTGACTCTCA 60.159 45.455 0.00 0.00 0.00 3.27
257 258 1.583054 AGCAAAACCGTGACTCTCAC 58.417 50.000 0.00 0.00 43.65 3.51
304 305 1.232119 TTTTTCGTTTCCGAGGAGGC 58.768 50.000 0.00 0.00 45.24 4.70
305 306 0.107081 TTTTCGTTTCCGAGGAGGCA 59.893 50.000 0.00 0.00 45.24 4.75
306 307 0.601841 TTTCGTTTCCGAGGAGGCAC 60.602 55.000 0.00 0.00 45.24 5.01
307 308 2.758770 TTCGTTTCCGAGGAGGCACG 62.759 60.000 11.86 11.86 45.24 5.34
323 324 4.717629 CGGCCGTGACTCTCGCAA 62.718 66.667 19.50 0.00 0.00 4.85
324 325 2.357034 GGCCGTGACTCTCGCAAA 60.357 61.111 0.00 0.00 0.00 3.68
325 326 1.959226 GGCCGTGACTCTCGCAAAA 60.959 57.895 0.00 0.00 0.00 2.44
326 327 1.503818 GGCCGTGACTCTCGCAAAAA 61.504 55.000 0.00 0.00 0.00 1.94
327 328 0.384353 GCCGTGACTCTCGCAAAAAC 60.384 55.000 0.00 0.00 0.00 2.43
328 329 0.934496 CCGTGACTCTCGCAAAAACA 59.066 50.000 0.00 0.00 0.00 2.83
329 330 1.332904 CCGTGACTCTCGCAAAAACAC 60.333 52.381 0.00 0.00 0.00 3.32
330 331 1.326245 CGTGACTCTCGCAAAAACACA 59.674 47.619 0.00 0.00 0.00 3.72
331 332 2.705154 GTGACTCTCGCAAAAACACAC 58.295 47.619 0.00 0.00 0.00 3.82
332 333 1.668751 TGACTCTCGCAAAAACACACC 59.331 47.619 0.00 0.00 0.00 4.16
333 334 1.002792 GACTCTCGCAAAAACACACCC 60.003 52.381 0.00 0.00 0.00 4.61
334 335 0.041312 CTCTCGCAAAAACACACCCG 60.041 55.000 0.00 0.00 0.00 5.28
335 336 0.745128 TCTCGCAAAAACACACCCGT 60.745 50.000 0.00 0.00 0.00 5.28
361 362 4.914291 CGGAAGCAAAACCGTGAC 57.086 55.556 0.00 0.00 43.53 3.67
362 363 2.317230 CGGAAGCAAAACCGTGACT 58.683 52.632 0.00 0.00 43.53 3.41
363 364 0.234884 CGGAAGCAAAACCGTGACTC 59.765 55.000 0.00 0.00 43.53 3.36
364 365 1.594331 GGAAGCAAAACCGTGACTCT 58.406 50.000 0.00 0.00 0.00 3.24
365 366 1.531578 GGAAGCAAAACCGTGACTCTC 59.468 52.381 0.00 0.00 0.00 3.20
366 367 2.210116 GAAGCAAAACCGTGACTCTCA 58.790 47.619 0.00 0.00 0.00 3.27
367 368 1.583054 AGCAAAACCGTGACTCTCAC 58.417 50.000 0.00 0.00 43.65 3.51
433 434 4.054085 ACGACCGTGACTCTCGAA 57.946 55.556 5.88 0.00 0.00 3.71
434 435 2.324215 ACGACCGTGACTCTCGAAA 58.676 52.632 5.88 0.00 0.00 3.46
435 436 0.879765 ACGACCGTGACTCTCGAAAT 59.120 50.000 5.88 0.00 0.00 2.17
436 437 1.268899 ACGACCGTGACTCTCGAAATT 59.731 47.619 5.88 0.00 0.00 1.82
437 438 2.288030 ACGACCGTGACTCTCGAAATTT 60.288 45.455 5.88 0.00 0.00 1.82
438 439 2.090658 CGACCGTGACTCTCGAAATTTG 59.909 50.000 0.00 0.00 0.00 2.32
439 440 3.057734 GACCGTGACTCTCGAAATTTGT 58.942 45.455 0.00 0.00 0.00 2.83
440 441 3.463944 ACCGTGACTCTCGAAATTTGTT 58.536 40.909 0.00 0.00 0.00 2.83
441 442 3.875134 ACCGTGACTCTCGAAATTTGTTT 59.125 39.130 0.00 0.00 0.00 2.83
444 445 4.670621 CGTGACTCTCGAAATTTGTTTTGG 59.329 41.667 0.00 0.00 0.00 3.28
447 448 5.183014 ACTCTCGAAATTTGTTTTGGTCC 57.817 39.130 0.00 0.00 0.00 4.46
453 454 5.064071 TCGAAATTTGTTTTGGTCCAAAAGC 59.936 36.000 26.72 20.77 42.77 3.51
458 459 4.664150 TGTTTTGGTCCAAAAGCTAAGG 57.336 40.909 26.72 0.00 42.77 2.69
467 468 2.552373 CCAAAAGCTAAGGAAGACCGGT 60.552 50.000 6.92 6.92 41.83 5.28
469 470 1.640917 AAGCTAAGGAAGACCGGTGA 58.359 50.000 14.63 0.00 41.83 4.02
528 530 1.570347 ATAGCCAAAAACGCGTGCGA 61.570 50.000 22.32 8.33 42.83 5.10
564 566 0.038166 AATCTGAAGGAAGCGGCCAA 59.962 50.000 2.24 0.00 0.00 4.52
566 568 0.606401 TCTGAAGGAAGCGGCCAAAG 60.606 55.000 2.24 0.00 0.00 2.77
591 593 2.180017 CGTGGCAAATGGCTGAGC 59.820 61.111 8.50 0.00 44.01 4.26
593 595 1.895238 GTGGCAAATGGCTGAGCAT 59.105 52.632 6.82 0.00 44.01 3.79
625 627 1.023513 GCTGATTGTTGCGAGGCTCT 61.024 55.000 13.50 0.00 0.00 4.09
627 629 0.321346 TGATTGTTGCGAGGCTCTCA 59.679 50.000 13.50 8.21 0.00 3.27
630 632 1.674359 TTGTTGCGAGGCTCTCAAAA 58.326 45.000 20.48 13.50 0.00 2.44
631 633 1.674359 TGTTGCGAGGCTCTCAAAAA 58.326 45.000 20.48 10.11 0.00 1.94
653 655 1.804748 GCGCTTGTTAACTAGTGGCTT 59.195 47.619 25.04 0.00 31.55 4.35
657 659 3.344515 CTTGTTAACTAGTGGCTTCCCC 58.655 50.000 7.22 0.00 0.00 4.81
658 660 1.631898 TGTTAACTAGTGGCTTCCCCC 59.368 52.381 7.22 0.00 0.00 5.40
659 661 0.906775 TTAACTAGTGGCTTCCCCCG 59.093 55.000 0.00 0.00 0.00 5.73
660 662 0.041535 TAACTAGTGGCTTCCCCCGA 59.958 55.000 0.00 0.00 0.00 5.14
661 663 0.838987 AACTAGTGGCTTCCCCCGAA 60.839 55.000 0.00 0.00 0.00 4.30
693 695 0.879090 CGGGTTAGTTGCTCCCAAAC 59.121 55.000 0.00 0.00 41.12 2.93
694 696 1.816183 CGGGTTAGTTGCTCCCAAACA 60.816 52.381 0.00 0.00 41.12 2.83
712 714 0.529378 CAAATGGGCCAGAAGCTGTC 59.471 55.000 13.78 0.00 43.05 3.51
728 730 2.755650 CTGTCTACGTGTTGAAAGCCT 58.244 47.619 0.00 0.00 0.00 4.58
742 744 9.774742 GTGTTGAAAGCCTATAACAGAAAATAG 57.225 33.333 0.00 0.00 34.11 1.73
824 826 2.098443 TCAACAAGGTCAAAACGGCTTC 59.902 45.455 0.00 0.00 0.00 3.86
826 828 1.404035 ACAAGGTCAAAACGGCTTCAC 59.596 47.619 0.00 0.00 0.00 3.18
854 859 2.943036 AAAGGGTCAAAACGGCTAGA 57.057 45.000 0.00 0.00 0.00 2.43
855 860 2.943036 AAGGGTCAAAACGGCTAGAA 57.057 45.000 0.00 0.00 0.00 2.10
930 935 0.790814 GAGCCTATAAATCCACGCGC 59.209 55.000 5.73 0.00 0.00 6.86
986 991 1.772063 AACACGTCCGCTTCTGTTGC 61.772 55.000 0.00 0.00 0.00 4.17
994 999 3.444657 GCTTCTGTTGCGTGACTTG 57.555 52.632 0.00 0.00 0.00 3.16
995 1000 0.658536 GCTTCTGTTGCGTGACTTGC 60.659 55.000 0.00 0.00 0.00 4.01
996 1001 0.383491 CTTCTGTTGCGTGACTTGCG 60.383 55.000 0.00 0.00 34.24 4.85
1018 1023 1.573829 GATGGCGGCTCGTGTTTTCA 61.574 55.000 11.43 0.00 0.00 2.69
1035 1040 1.763968 TCATCTCGTCGTCCAGGATT 58.236 50.000 0.00 0.00 0.00 3.01
1334 1344 3.123804 CGATCGACGATTTTGAGGGATT 58.876 45.455 10.26 0.00 45.77 3.01
1335 1345 4.037089 TCGATCGACGATTTTGAGGGATTA 59.963 41.667 15.15 0.00 46.45 1.75
1514 1525 6.223852 TCTCTTGTGTTTCCTCTGTATTCAC 58.776 40.000 0.00 0.00 0.00 3.18
1566 1577 3.306780 CCTTGGTCTATCCGTGTTCTTGT 60.307 47.826 0.00 0.00 39.52 3.16
1578 1589 3.363970 CGTGTTCTTGTCCAAATTCGAGG 60.364 47.826 0.00 0.00 0.00 4.63
1602 1613 7.315247 GGCACCTTTCAAAAAGTGTTATTTT 57.685 32.000 6.20 0.00 33.84 1.82
1695 1714 1.226746 CTCGAAACGGAGGCAAAAGT 58.773 50.000 0.00 0.00 0.00 2.66
1723 1742 8.874745 TGCTTCGTCGATTAATTAAAAAGAAG 57.125 30.769 18.80 18.80 35.73 2.85
1724 1743 8.714179 TGCTTCGTCGATTAATTAAAAAGAAGA 58.286 29.630 22.99 17.17 34.91 2.87
1725 1744 9.200303 GCTTCGTCGATTAATTAAAAAGAAGAG 57.800 33.333 22.99 15.07 34.91 2.85
1750 1770 9.705290 AGAATTGCCTTGTTATTTACGAAAAAT 57.295 25.926 0.00 0.00 0.00 1.82
1751 1771 9.739786 GAATTGCCTTGTTATTTACGAAAAATG 57.260 29.630 9.68 0.00 0.00 2.32
1752 1772 7.644986 TTGCCTTGTTATTTACGAAAAATGG 57.355 32.000 9.68 4.69 0.00 3.16
1754 1774 6.015350 TGCCTTGTTATTTACGAAAAATGGGA 60.015 34.615 9.68 2.69 0.00 4.37
1755 1775 7.039270 GCCTTGTTATTTACGAAAAATGGGAT 58.961 34.615 9.68 0.00 0.00 3.85
1756 1776 8.192110 GCCTTGTTATTTACGAAAAATGGGATA 58.808 33.333 9.68 0.00 0.00 2.59
1778 2808 7.148069 GGATAAAACCTTCCCAATACAGAACAG 60.148 40.741 0.00 0.00 0.00 3.16
1842 2872 1.666872 CGACCCAAACCGTCAGGAC 60.667 63.158 0.00 0.00 41.02 3.85
1863 2894 0.541764 AGCAAGGGGCCGAAAATCAA 60.542 50.000 0.00 0.00 46.50 2.57
1864 2895 0.320050 GCAAGGGGCCGAAAATCAAA 59.680 50.000 0.00 0.00 36.11 2.69
1876 2907 4.922692 CCGAAAATCAAACATTAAGCAGCA 59.077 37.500 0.00 0.00 0.00 4.41
1949 2980 5.697067 ACTTCTCCTTCACTATATCGGTCT 58.303 41.667 0.00 0.00 0.00 3.85
1973 3082 2.113860 GCTAACAGCCTCCATGTTGA 57.886 50.000 1.74 0.00 40.92 3.18
1997 3106 4.725790 AGCAAGTCACAAAGCTCTTTTT 57.274 36.364 0.00 0.00 30.05 1.94
2045 3154 4.717313 GAGGGTGGAACGGGTGCC 62.717 72.222 0.00 0.00 38.12 5.01
2056 3165 2.676471 GGGTGCCGAAGCCACATT 60.676 61.111 1.88 0.00 46.46 2.71
2064 3173 1.153958 GAAGCCACATTTGAGCGCC 60.154 57.895 2.29 0.00 0.00 6.53
2067 3176 2.568090 CCACATTTGAGCGCCCAC 59.432 61.111 2.29 0.00 0.00 4.61
2083 3192 0.939577 CCACACGAGTTCACCTCACG 60.940 60.000 0.00 0.00 40.48 4.35
2089 3198 1.583054 GAGTTCACCTCACGCAGTTT 58.417 50.000 0.00 0.00 41.61 2.66
2095 3204 2.036604 TCACCTCACGCAGTTTACATGA 59.963 45.455 0.00 0.00 41.61 3.07
2096 3205 2.805671 CACCTCACGCAGTTTACATGAA 59.194 45.455 0.00 0.00 41.61 2.57
2145 3254 2.100797 CATGCGTGCCAACCATCG 59.899 61.111 0.00 0.00 0.00 3.84
2153 3262 0.541392 TGCCAACCATCGTATGCTCT 59.459 50.000 0.00 0.00 0.00 4.09
2161 3270 6.447162 CAACCATCGTATGCTCTACTGATAA 58.553 40.000 0.00 0.00 0.00 1.75
2170 3279 5.023533 TGCTCTACTGATAAAGGCGAATT 57.976 39.130 0.00 0.00 0.00 2.17
2185 3294 3.738282 GGCGAATTAGAGCTCACACATAG 59.262 47.826 17.77 2.66 0.00 2.23
2203 3313 0.035056 AGCACTTAAGCTCGGGCATT 60.035 50.000 11.40 3.31 42.18 3.56
2238 3348 2.049248 CACAACCACGGCAATGGC 60.049 61.111 5.41 0.00 44.33 4.40
2255 3365 3.009115 CCCCTCCCTCAGCGGAAA 61.009 66.667 0.00 0.00 33.16 3.13
2259 3369 0.250727 CCTCCCTCAGCGGAAAACAA 60.251 55.000 0.00 0.00 33.16 2.83
2280 3390 3.241530 AGTGGGCAAGGCAGACGA 61.242 61.111 0.00 0.00 0.00 4.20
2286 3396 2.456119 GCAAGGCAGACGACGATGG 61.456 63.158 0.00 0.00 0.00 3.51
2287 3397 2.125512 AAGGCAGACGACGATGGC 60.126 61.111 18.54 18.54 41.98 4.40
2298 3408 1.352156 GACGATGGCGAGTTGTCCAC 61.352 60.000 0.00 0.00 41.64 4.02
2299 3409 1.374125 CGATGGCGAGTTGTCCACA 60.374 57.895 0.00 0.00 40.82 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.451096 GGACGCACAGTTTGAGAGATAAAA 59.549 41.667 0.00 0.00 0.00 1.52
2 3 3.994392 GGACGCACAGTTTGAGAGATAAA 59.006 43.478 0.00 0.00 0.00 1.40
3 4 3.006430 TGGACGCACAGTTTGAGAGATAA 59.994 43.478 0.00 0.00 0.00 1.75
4 5 2.560981 TGGACGCACAGTTTGAGAGATA 59.439 45.455 0.00 0.00 0.00 1.98
6 7 0.750249 TGGACGCACAGTTTGAGAGA 59.250 50.000 0.00 0.00 0.00 3.10
7 8 1.581934 TTGGACGCACAGTTTGAGAG 58.418 50.000 0.00 0.00 0.00 3.20
8 9 2.031258 TTTGGACGCACAGTTTGAGA 57.969 45.000 0.00 0.00 0.00 3.27
9 10 2.549754 AGATTTGGACGCACAGTTTGAG 59.450 45.455 0.00 0.00 0.00 3.02
10 11 2.548057 GAGATTTGGACGCACAGTTTGA 59.452 45.455 0.00 0.00 0.00 2.69
11 12 2.290367 TGAGATTTGGACGCACAGTTTG 59.710 45.455 0.00 0.00 0.00 2.93
12 13 2.571212 TGAGATTTGGACGCACAGTTT 58.429 42.857 0.00 0.00 0.00 2.66
13 14 2.254546 TGAGATTTGGACGCACAGTT 57.745 45.000 0.00 0.00 0.00 3.16
14 15 2.254546 TTGAGATTTGGACGCACAGT 57.745 45.000 0.00 0.00 0.00 3.55
15 16 3.725895 CGATTTGAGATTTGGACGCACAG 60.726 47.826 0.00 0.00 0.00 3.66
16 17 2.159430 CGATTTGAGATTTGGACGCACA 59.841 45.455 0.00 0.00 0.00 4.57
17 18 2.159627 ACGATTTGAGATTTGGACGCAC 59.840 45.455 0.00 0.00 0.00 5.34
18 19 2.422597 ACGATTTGAGATTTGGACGCA 58.577 42.857 0.00 0.00 0.00 5.24
19 20 3.471495 AACGATTTGAGATTTGGACGC 57.529 42.857 0.00 0.00 0.00 5.19
20 21 7.045612 CGATAAAAACGATTTGAGATTTGGACG 60.046 37.037 0.00 0.00 0.00 4.79
21 22 7.749126 ACGATAAAAACGATTTGAGATTTGGAC 59.251 33.333 0.00 0.00 34.70 4.02
22 23 7.812648 ACGATAAAAACGATTTGAGATTTGGA 58.187 30.769 0.00 0.00 34.70 3.53
23 24 8.365210 CAACGATAAAAACGATTTGAGATTTGG 58.635 33.333 0.00 0.00 34.70 3.28
24 25 8.365210 CCAACGATAAAAACGATTTGAGATTTG 58.635 33.333 0.00 0.00 34.70 2.32
25 26 8.293867 TCCAACGATAAAAACGATTTGAGATTT 58.706 29.630 0.00 0.00 34.70 2.17
26 27 7.812648 TCCAACGATAAAAACGATTTGAGATT 58.187 30.769 0.00 0.00 34.70 2.40
27 28 7.372451 TCCAACGATAAAAACGATTTGAGAT 57.628 32.000 0.00 0.00 34.70 2.75
28 29 6.788684 TCCAACGATAAAAACGATTTGAGA 57.211 33.333 0.00 0.00 34.70 3.27
29 30 7.218204 GGAATCCAACGATAAAAACGATTTGAG 59.782 37.037 0.00 0.00 34.70 3.02
30 31 7.024768 GGAATCCAACGATAAAAACGATTTGA 58.975 34.615 0.00 0.00 34.70 2.69
31 32 7.027161 AGGAATCCAACGATAAAAACGATTTG 58.973 34.615 0.61 0.00 34.70 2.32
32 33 7.153217 AGGAATCCAACGATAAAAACGATTT 57.847 32.000 0.61 0.00 34.70 2.17
33 34 6.456449 CGAGGAATCCAACGATAAAAACGATT 60.456 38.462 12.05 0.00 34.70 3.34
34 35 5.006358 CGAGGAATCCAACGATAAAAACGAT 59.994 40.000 12.05 0.00 34.70 3.73
35 36 4.327898 CGAGGAATCCAACGATAAAAACGA 59.672 41.667 12.05 0.00 34.70 3.85
36 37 4.574759 CGAGGAATCCAACGATAAAAACG 58.425 43.478 12.05 0.00 0.00 3.60
37 38 4.340263 GCGAGGAATCCAACGATAAAAAC 58.660 43.478 19.24 0.58 0.00 2.43
38 39 3.062909 CGCGAGGAATCCAACGATAAAAA 59.937 43.478 19.24 0.00 0.00 1.94
39 40 2.605818 CGCGAGGAATCCAACGATAAAA 59.394 45.455 19.24 0.00 0.00 1.52
40 41 2.198406 CGCGAGGAATCCAACGATAAA 58.802 47.619 19.24 0.00 0.00 1.40
41 42 1.135527 ACGCGAGGAATCCAACGATAA 59.864 47.619 15.93 0.00 0.00 1.75
42 43 0.742505 ACGCGAGGAATCCAACGATA 59.257 50.000 15.93 0.00 0.00 2.92
43 44 0.527817 GACGCGAGGAATCCAACGAT 60.528 55.000 15.93 8.76 0.00 3.73
44 45 1.153901 GACGCGAGGAATCCAACGA 60.154 57.895 15.93 0.00 0.00 3.85
45 46 2.505498 CGACGCGAGGAATCCAACG 61.505 63.158 15.93 12.84 0.00 4.10
46 47 1.153901 TCGACGCGAGGAATCCAAC 60.154 57.895 15.93 0.00 0.00 3.77
47 48 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
56 57 1.983605 GTTTTCAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
57 58 1.986378 AGTTTTCAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
58 59 4.413087 TCTAGTTTTCAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
59 60 6.197468 GGAATCTAGTTTTCAAGATCTCGACG 59.803 42.308 0.00 0.00 31.20 5.12
60 61 7.036220 TGGAATCTAGTTTTCAAGATCTCGAC 58.964 38.462 0.00 0.00 31.20 4.20
61 62 7.170393 TGGAATCTAGTTTTCAAGATCTCGA 57.830 36.000 0.00 0.00 31.20 4.04
62 63 7.493971 ACATGGAATCTAGTTTTCAAGATCTCG 59.506 37.037 0.00 0.00 31.20 4.04
63 64 8.729805 ACATGGAATCTAGTTTTCAAGATCTC 57.270 34.615 0.00 0.00 31.20 2.75
64 65 8.954350 CAACATGGAATCTAGTTTTCAAGATCT 58.046 33.333 4.45 0.00 31.20 2.75
65 66 8.950210 TCAACATGGAATCTAGTTTTCAAGATC 58.050 33.333 4.45 0.00 31.20 2.75
66 67 8.868522 TCAACATGGAATCTAGTTTTCAAGAT 57.131 30.769 4.45 0.00 33.87 2.40
67 68 8.868522 ATCAACATGGAATCTAGTTTTCAAGA 57.131 30.769 4.45 0.18 0.00 3.02
69 70 9.177608 CCTATCAACATGGAATCTAGTTTTCAA 57.822 33.333 0.00 0.00 0.00 2.69
70 71 8.328758 ACCTATCAACATGGAATCTAGTTTTCA 58.671 33.333 0.00 0.00 0.00 2.69
71 72 8.738645 ACCTATCAACATGGAATCTAGTTTTC 57.261 34.615 0.00 0.00 0.00 2.29
72 73 9.533831 AAACCTATCAACATGGAATCTAGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
73 74 9.533831 AAAACCTATCAACATGGAATCTAGTTT 57.466 29.630 0.00 0.00 0.00 2.66
74 75 8.960591 CAAAACCTATCAACATGGAATCTAGTT 58.039 33.333 0.00 0.00 0.00 2.24
75 76 8.328758 TCAAAACCTATCAACATGGAATCTAGT 58.671 33.333 0.00 0.00 0.00 2.57
76 77 8.616076 GTCAAAACCTATCAACATGGAATCTAG 58.384 37.037 0.00 0.00 0.00 2.43
77 78 8.106462 TGTCAAAACCTATCAACATGGAATCTA 58.894 33.333 0.00 0.00 0.00 1.98
78 79 6.947733 TGTCAAAACCTATCAACATGGAATCT 59.052 34.615 0.00 0.00 0.00 2.40
79 80 7.156876 TGTCAAAACCTATCAACATGGAATC 57.843 36.000 0.00 0.00 0.00 2.52
80 81 7.537596 TTGTCAAAACCTATCAACATGGAAT 57.462 32.000 0.00 0.00 0.00 3.01
81 82 6.968263 TTGTCAAAACCTATCAACATGGAA 57.032 33.333 0.00 0.00 0.00 3.53
82 83 6.549364 AGTTTGTCAAAACCTATCAACATGGA 59.451 34.615 0.00 0.00 45.75 3.41
83 84 6.748132 AGTTTGTCAAAACCTATCAACATGG 58.252 36.000 0.00 0.00 45.75 3.66
84 85 8.647143 AAAGTTTGTCAAAACCTATCAACATG 57.353 30.769 0.00 0.00 45.75 3.21
85 86 9.665719 AAAAAGTTTGTCAAAACCTATCAACAT 57.334 25.926 0.00 0.00 45.75 2.71
148 149 0.538746 ATGCTCCCGGTTCGGTTTTT 60.539 50.000 0.00 0.00 46.80 1.94
149 150 1.074248 ATGCTCCCGGTTCGGTTTT 59.926 52.632 0.00 0.00 46.80 2.43
150 151 1.674322 CATGCTCCCGGTTCGGTTT 60.674 57.895 0.00 0.00 46.80 3.27
151 152 2.046314 CATGCTCCCGGTTCGGTT 60.046 61.111 0.00 0.00 46.80 4.44
152 153 4.096003 CCATGCTCCCGGTTCGGT 62.096 66.667 0.00 0.00 46.80 4.69
154 155 0.748005 AATTCCATGCTCCCGGTTCG 60.748 55.000 0.00 0.00 0.00 3.95
155 156 1.474330 AAATTCCATGCTCCCGGTTC 58.526 50.000 0.00 0.00 0.00 3.62
156 157 1.937191 AAAATTCCATGCTCCCGGTT 58.063 45.000 0.00 0.00 0.00 4.44
157 158 1.937191 AAAAATTCCATGCTCCCGGT 58.063 45.000 0.00 0.00 0.00 5.28
173 174 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
174 175 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
175 176 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
176 177 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
177 178 0.036306 GTGCCTCTTTCGGAAAGGGA 59.964 55.000 27.71 14.21 41.66 4.20
178 179 0.036875 AGTGCCTCTTTCGGAAAGGG 59.963 55.000 25.66 23.41 38.75 3.95
179 180 1.443802 GAGTGCCTCTTTCGGAAAGG 58.556 55.000 25.66 15.57 39.01 3.11
180 181 1.443802 GGAGTGCCTCTTTCGGAAAG 58.556 55.000 21.64 21.64 39.88 2.62
181 182 0.036306 GGGAGTGCCTCTTTCGGAAA 59.964 55.000 2.78 2.78 0.00 3.13
182 183 1.125093 TGGGAGTGCCTCTTTCGGAA 61.125 55.000 1.06 0.00 0.00 4.30
183 184 0.909610 ATGGGAGTGCCTCTTTCGGA 60.910 55.000 1.06 0.00 0.00 4.55
184 185 0.745845 CATGGGAGTGCCTCTTTCGG 60.746 60.000 1.06 0.00 0.00 4.30
185 186 1.372087 GCATGGGAGTGCCTCTTTCG 61.372 60.000 1.06 0.00 39.18 3.46
186 187 2.486796 GCATGGGAGTGCCTCTTTC 58.513 57.895 1.06 0.00 39.18 2.62
187 188 4.751431 GCATGGGAGTGCCTCTTT 57.249 55.556 1.06 0.00 39.18 2.52
193 194 1.451028 GTGAGAGGCATGGGAGTGC 60.451 63.158 0.00 0.00 44.31 4.40
194 195 1.153489 CGTGAGAGGCATGGGAGTG 60.153 63.158 0.00 0.00 0.00 3.51
195 196 0.904865 TTCGTGAGAGGCATGGGAGT 60.905 55.000 0.00 0.00 43.69 3.85
196 197 0.250234 TTTCGTGAGAGGCATGGGAG 59.750 55.000 0.00 0.00 43.69 4.30
197 198 0.911769 ATTTCGTGAGAGGCATGGGA 59.088 50.000 0.00 0.00 43.69 4.37
198 199 1.303309 GATTTCGTGAGAGGCATGGG 58.697 55.000 0.00 0.00 43.69 4.00
199 200 1.667724 GTGATTTCGTGAGAGGCATGG 59.332 52.381 0.00 0.00 43.69 3.66
200 201 2.349590 TGTGATTTCGTGAGAGGCATG 58.650 47.619 0.00 0.00 43.69 4.06
201 202 2.768253 TGTGATTTCGTGAGAGGCAT 57.232 45.000 0.00 0.00 43.69 4.40
202 203 2.542020 TTGTGATTTCGTGAGAGGCA 57.458 45.000 0.00 0.00 43.69 4.75
203 204 2.029728 CGATTGTGATTTCGTGAGAGGC 59.970 50.000 0.00 0.00 43.69 4.70
204 205 3.254060 ACGATTGTGATTTCGTGAGAGG 58.746 45.455 0.00 0.00 46.03 3.69
218 219 0.881796 TCTGCGAGAGACACGATTGT 59.118 50.000 0.00 0.00 39.32 2.71
219 220 1.916651 CTTCTGCGAGAGACACGATTG 59.083 52.381 0.00 0.00 0.00 2.67
220 221 1.734047 GCTTCTGCGAGAGACACGATT 60.734 52.381 0.00 0.00 0.00 3.34
221 222 0.179150 GCTTCTGCGAGAGACACGAT 60.179 55.000 0.00 0.00 0.00 3.73
222 223 1.210413 GCTTCTGCGAGAGACACGA 59.790 57.895 0.00 0.00 0.00 4.35
223 224 0.664466 TTGCTTCTGCGAGAGACACG 60.664 55.000 0.00 0.00 43.34 4.49
224 225 1.502231 TTTGCTTCTGCGAGAGACAC 58.498 50.000 0.00 0.00 43.34 3.67
225 226 1.867233 GTTTTGCTTCTGCGAGAGACA 59.133 47.619 0.00 0.00 43.34 3.41
226 227 1.195674 GGTTTTGCTTCTGCGAGAGAC 59.804 52.381 0.00 0.00 43.34 3.36
227 228 1.512926 GGTTTTGCTTCTGCGAGAGA 58.487 50.000 0.00 0.00 43.34 3.10
228 229 0.164647 CGGTTTTGCTTCTGCGAGAG 59.835 55.000 0.00 0.00 43.34 3.20
229 230 0.531974 ACGGTTTTGCTTCTGCGAGA 60.532 50.000 0.00 0.00 43.34 4.04
230 231 0.384725 CACGGTTTTGCTTCTGCGAG 60.385 55.000 0.00 0.00 43.34 5.03
231 232 0.812014 TCACGGTTTTGCTTCTGCGA 60.812 50.000 0.00 0.00 43.34 5.10
232 233 0.657368 GTCACGGTTTTGCTTCTGCG 60.657 55.000 0.00 0.00 43.34 5.18
233 234 0.663153 AGTCACGGTTTTGCTTCTGC 59.337 50.000 0.00 0.00 40.20 4.26
234 235 2.213499 AGAGTCACGGTTTTGCTTCTG 58.787 47.619 0.00 0.00 0.00 3.02
235 236 2.158957 TGAGAGTCACGGTTTTGCTTCT 60.159 45.455 0.00 0.00 0.00 2.85
236 237 2.032808 GTGAGAGTCACGGTTTTGCTTC 60.033 50.000 0.00 0.00 37.67 3.86
237 238 1.940613 GTGAGAGTCACGGTTTTGCTT 59.059 47.619 0.00 0.00 37.67 3.91
238 239 1.583054 GTGAGAGTCACGGTTTTGCT 58.417 50.000 0.00 0.00 37.67 3.91
306 307 4.717629 TTGCGAGAGTCACGGCCG 62.718 66.667 26.86 26.86 0.00 6.13
307 308 1.503818 TTTTTGCGAGAGTCACGGCC 61.504 55.000 11.95 0.00 0.00 6.13
308 309 0.384353 GTTTTTGCGAGAGTCACGGC 60.384 55.000 11.95 5.00 0.00 5.68
309 310 0.934496 TGTTTTTGCGAGAGTCACGG 59.066 50.000 11.95 0.00 0.00 4.94
310 311 1.326245 TGTGTTTTTGCGAGAGTCACG 59.674 47.619 5.53 5.53 0.00 4.35
311 312 2.538939 GGTGTGTTTTTGCGAGAGTCAC 60.539 50.000 0.00 0.00 0.00 3.67
312 313 1.668751 GGTGTGTTTTTGCGAGAGTCA 59.331 47.619 0.00 0.00 0.00 3.41
313 314 1.002792 GGGTGTGTTTTTGCGAGAGTC 60.003 52.381 0.00 0.00 0.00 3.36
314 315 1.021968 GGGTGTGTTTTTGCGAGAGT 58.978 50.000 0.00 0.00 0.00 3.24
315 316 0.041312 CGGGTGTGTTTTTGCGAGAG 60.041 55.000 0.00 0.00 0.00 3.20
316 317 0.745128 ACGGGTGTGTTTTTGCGAGA 60.745 50.000 0.00 0.00 0.00 4.04
317 318 0.591236 CACGGGTGTGTTTTTGCGAG 60.591 55.000 0.00 0.00 41.34 5.03
318 319 1.429825 CACGGGTGTGTTTTTGCGA 59.570 52.632 0.00 0.00 41.34 5.10
319 320 3.990141 CACGGGTGTGTTTTTGCG 58.010 55.556 0.00 0.00 41.34 4.85
337 338 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
338 339 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
339 340 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
340 341 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
345 346 1.531578 GAGAGTCACGGTTTTGCTTCC 59.468 52.381 0.00 0.00 0.00 3.46
346 347 2.032808 GTGAGAGTCACGGTTTTGCTTC 60.033 50.000 0.00 0.00 37.67 3.86
347 348 1.940613 GTGAGAGTCACGGTTTTGCTT 59.059 47.619 0.00 0.00 37.67 3.91
348 349 1.583054 GTGAGAGTCACGGTTTTGCT 58.417 50.000 0.00 0.00 37.67 3.91
403 404 1.737008 GGTCGTGCCTCTCGGAAAC 60.737 63.158 0.00 0.00 0.00 2.78
404 405 2.654877 GGTCGTGCCTCTCGGAAA 59.345 61.111 0.00 0.00 0.00 3.13
405 406 3.744719 CGGTCGTGCCTCTCGGAA 61.745 66.667 0.00 0.00 34.25 4.30
407 408 4.778415 CACGGTCGTGCCTCTCGG 62.778 72.222 10.59 0.00 39.39 4.63
408 409 3.733960 TCACGGTCGTGCCTCTCG 61.734 66.667 17.46 0.00 45.04 4.04
409 410 2.126424 GTCACGGTCGTGCCTCTC 60.126 66.667 17.46 3.53 45.04 3.20
410 411 2.597805 AGTCACGGTCGTGCCTCT 60.598 61.111 17.46 12.39 45.04 3.69
411 412 2.126424 GAGTCACGGTCGTGCCTC 60.126 66.667 16.63 16.63 42.51 4.70
412 413 2.597805 AGAGTCACGGTCGTGCCT 60.598 61.111 17.46 12.44 45.04 4.75
413 414 2.126424 GAGAGTCACGGTCGTGCC 60.126 66.667 17.46 7.52 45.04 5.01
414 415 2.453773 TTCGAGAGTCACGGTCGTGC 62.454 60.000 17.46 12.68 45.04 5.34
415 416 0.040692 TTTCGAGAGTCACGGTCGTG 60.041 55.000 16.33 16.33 46.64 4.35
416 417 0.879765 ATTTCGAGAGTCACGGTCGT 59.120 50.000 10.12 0.00 35.22 4.34
417 418 1.978542 AATTTCGAGAGTCACGGTCG 58.021 50.000 10.12 1.68 34.98 4.79
418 419 3.057734 ACAAATTTCGAGAGTCACGGTC 58.942 45.455 10.12 0.00 0.00 4.79
419 420 3.107642 ACAAATTTCGAGAGTCACGGT 57.892 42.857 10.12 0.00 0.00 4.83
420 421 4.468095 AAACAAATTTCGAGAGTCACGG 57.532 40.909 10.12 0.00 0.00 4.94
421 422 4.670621 CCAAAACAAATTTCGAGAGTCACG 59.329 41.667 3.33 3.33 0.00 4.35
422 423 5.578776 ACCAAAACAAATTTCGAGAGTCAC 58.421 37.500 0.00 0.00 0.00 3.67
423 424 5.220970 GGACCAAAACAAATTTCGAGAGTCA 60.221 40.000 0.00 0.00 0.00 3.41
424 425 5.212934 GGACCAAAACAAATTTCGAGAGTC 58.787 41.667 0.00 0.00 0.00 3.36
425 426 4.642885 TGGACCAAAACAAATTTCGAGAGT 59.357 37.500 0.00 0.00 0.00 3.24
426 427 5.181690 TGGACCAAAACAAATTTCGAGAG 57.818 39.130 0.00 0.00 0.00 3.20
427 428 5.584253 TTGGACCAAAACAAATTTCGAGA 57.416 34.783 3.84 0.00 0.00 4.04
428 429 6.654793 TTTTGGACCAAAACAAATTTCGAG 57.345 33.333 25.33 0.00 38.24 4.04
429 430 5.064071 GCTTTTGGACCAAAACAAATTTCGA 59.936 36.000 25.33 4.62 38.24 3.71
430 431 5.064579 AGCTTTTGGACCAAAACAAATTTCG 59.935 36.000 25.33 15.25 38.24 3.46
431 432 6.435430 AGCTTTTGGACCAAAACAAATTTC 57.565 33.333 25.33 10.40 38.24 2.17
432 433 7.066887 CCTTAGCTTTTGGACCAAAACAAATTT 59.933 33.333 25.33 11.42 38.24 1.82
433 434 6.542005 CCTTAGCTTTTGGACCAAAACAAATT 59.458 34.615 25.33 12.85 38.24 1.82
434 435 6.054941 CCTTAGCTTTTGGACCAAAACAAAT 58.945 36.000 25.33 14.63 38.24 2.32
435 436 5.187967 TCCTTAGCTTTTGGACCAAAACAAA 59.812 36.000 25.33 17.86 38.24 2.83
436 437 4.712337 TCCTTAGCTTTTGGACCAAAACAA 59.288 37.500 25.33 17.89 38.24 2.83
437 438 4.282496 TCCTTAGCTTTTGGACCAAAACA 58.718 39.130 25.33 12.58 38.24 2.83
438 439 4.929819 TCCTTAGCTTTTGGACCAAAAC 57.070 40.909 25.33 20.81 38.24 2.43
439 440 5.068591 GTCTTCCTTAGCTTTTGGACCAAAA 59.931 40.000 26.80 26.80 40.41 2.44
440 441 4.583073 GTCTTCCTTAGCTTTTGGACCAAA 59.417 41.667 15.89 15.89 0.00 3.28
441 442 4.142038 GTCTTCCTTAGCTTTTGGACCAA 58.858 43.478 1.69 1.69 0.00 3.67
444 445 2.742589 CGGTCTTCCTTAGCTTTTGGAC 59.257 50.000 0.00 0.00 0.00 4.02
447 448 2.484264 CACCGGTCTTCCTTAGCTTTTG 59.516 50.000 2.59 0.00 0.00 2.44
453 454 3.501062 GGTTTTTCACCGGTCTTCCTTAG 59.499 47.826 2.59 0.00 35.12 2.18
510 512 1.773054 TTCGCACGCGTTTTTGGCTA 61.773 50.000 10.22 0.00 40.74 3.93
549 551 2.268076 GCTTTGGCCGCTTCCTTCA 61.268 57.895 0.00 0.00 0.00 3.02
566 568 4.383602 ATTTGCCACGTGTCGCGC 62.384 61.111 15.65 11.15 46.11 6.86
575 577 0.459585 CATGCTCAGCCATTTGCCAC 60.460 55.000 0.00 0.00 42.71 5.01
576 578 1.894512 CATGCTCAGCCATTTGCCA 59.105 52.632 0.00 0.00 42.71 4.92
580 582 2.493030 GCGCATGCTCAGCCATTT 59.507 55.556 17.13 0.00 38.39 2.32
612 614 1.674359 TTTTTGAGAGCCTCGCAACA 58.326 45.000 10.56 1.39 35.96 3.33
630 632 2.225727 GCCACTAGTTAACAAGCGCTTT 59.774 45.455 22.51 10.09 0.00 3.51
631 633 1.804748 GCCACTAGTTAACAAGCGCTT 59.195 47.619 18.98 18.98 0.00 4.68
638 640 1.631898 GGGGGAAGCCACTAGTTAACA 59.368 52.381 8.61 0.00 0.00 2.41
649 651 4.491409 GCTCCTTCGGGGGAAGCC 62.491 72.222 0.00 0.00 37.98 4.35
666 668 4.446413 AACTAACCCGGGAGCGCG 62.446 66.667 32.02 12.85 0.00 6.86
667 669 2.818274 CAACTAACCCGGGAGCGC 60.818 66.667 32.02 0.00 0.00 5.92
668 670 2.818274 GCAACTAACCCGGGAGCG 60.818 66.667 32.02 16.72 0.00 5.03
669 671 1.449778 GAGCAACTAACCCGGGAGC 60.450 63.158 32.02 19.68 0.00 4.70
674 676 0.879090 GTTTGGGAGCAACTAACCCG 59.121 55.000 0.00 0.00 45.91 5.28
675 677 1.989706 TGTTTGGGAGCAACTAACCC 58.010 50.000 0.00 0.00 43.51 4.11
693 695 0.529378 GACAGCTTCTGGCCCATTTG 59.471 55.000 0.00 0.00 43.05 2.32
694 696 0.407139 AGACAGCTTCTGGCCCATTT 59.593 50.000 0.00 0.00 41.11 2.32
712 714 6.097356 TCTGTTATAGGCTTTCAACACGTAG 58.903 40.000 0.00 0.00 0.00 3.51
742 744 7.147880 GGCCTCCATCGGTATATACATATATCC 60.148 44.444 14.70 1.47 31.69 2.59
758 760 2.897350 GCTTTCGGGCCTCCATCG 60.897 66.667 0.84 0.00 0.00 3.84
853 858 2.147150 GAACACAAGCAGGAGTCCTTC 58.853 52.381 9.68 4.41 0.00 3.46
854 859 1.202818 GGAACACAAGCAGGAGTCCTT 60.203 52.381 9.68 0.00 0.00 3.36
855 860 0.398318 GGAACACAAGCAGGAGTCCT 59.602 55.000 5.62 5.62 0.00 3.85
948 953 8.036273 ACGTGTTTGTTAGGGTTTTATATGAG 57.964 34.615 0.00 0.00 0.00 2.90
951 956 6.092533 CGGACGTGTTTGTTAGGGTTTTATAT 59.907 38.462 0.00 0.00 0.00 0.86
952 957 5.407995 CGGACGTGTTTGTTAGGGTTTTATA 59.592 40.000 0.00 0.00 0.00 0.98
996 1001 4.796231 ACACGAGCCGCCATCGAC 62.796 66.667 8.83 0.00 42.76 4.20
1011 1016 2.609491 CCTGGACGACGAGATGAAAACA 60.609 50.000 0.00 0.00 0.00 2.83
1018 1023 0.103208 GCAATCCTGGACGACGAGAT 59.897 55.000 0.00 0.00 0.00 2.75
1334 1344 9.417561 CCATAAAGGTCTCCCGTCTAATATATA 57.582 37.037 0.00 0.00 35.12 0.86
1335 1345 8.307582 CCATAAAGGTCTCCCGTCTAATATAT 57.692 38.462 0.00 0.00 35.12 0.86
1355 1365 1.951209 TCCAGCAGACTCCACCATAA 58.049 50.000 0.00 0.00 0.00 1.90
1566 1577 0.404040 AAGGTGCCCTCGAATTTGGA 59.596 50.000 0.00 0.00 30.89 3.53
1578 1589 6.918892 AAATAACACTTTTTGAAAGGTGCC 57.081 33.333 15.83 0.00 46.28 5.01
1613 1624 7.565398 TGCTAGAGGGAGTAGAAATAGACAAAT 59.435 37.037 0.00 0.00 0.00 2.32
1689 1708 8.601243 AATTAATCGACGAAGCAATACTTTTG 57.399 30.769 0.00 0.00 39.29 2.44
1717 1736 9.914131 GTAAATAACAAGGCAATTCTCTTCTTT 57.086 29.630 0.00 0.00 0.00 2.52
1720 1739 7.748847 TCGTAAATAACAAGGCAATTCTCTTC 58.251 34.615 0.00 0.00 0.00 2.87
1723 1742 8.736751 TTTTCGTAAATAACAAGGCAATTCTC 57.263 30.769 0.00 0.00 0.00 2.87
1724 1743 9.705290 ATTTTTCGTAAATAACAAGGCAATTCT 57.295 25.926 0.00 0.00 0.00 2.40
1725 1744 9.739786 CATTTTTCGTAAATAACAAGGCAATTC 57.260 29.630 0.00 0.00 0.00 2.17
1752 1772 6.661805 TGTTCTGTATTGGGAAGGTTTTATCC 59.338 38.462 0.00 0.00 34.85 2.59
1754 1774 6.663523 CCTGTTCTGTATTGGGAAGGTTTTAT 59.336 38.462 0.00 0.00 0.00 1.40
1755 1775 6.007703 CCTGTTCTGTATTGGGAAGGTTTTA 58.992 40.000 0.00 0.00 0.00 1.52
1756 1776 4.832823 CCTGTTCTGTATTGGGAAGGTTTT 59.167 41.667 0.00 0.00 0.00 2.43
1768 2756 6.114187 TGTTGAGATGTTCCTGTTCTGTAT 57.886 37.500 0.00 0.00 0.00 2.29
1769 2757 5.545063 TGTTGAGATGTTCCTGTTCTGTA 57.455 39.130 0.00 0.00 0.00 2.74
1773 2761 6.377327 TCTTTTGTTGAGATGTTCCTGTTC 57.623 37.500 0.00 0.00 0.00 3.18
1778 2808 6.655003 TCCACTATCTTTTGTTGAGATGTTCC 59.345 38.462 0.00 0.00 35.56 3.62
1837 2867 4.785453 GGCCCCTTGCTCGTCCTG 62.785 72.222 0.00 0.00 40.92 3.86
1842 2872 1.993369 GATTTTCGGCCCCTTGCTCG 61.993 60.000 0.00 0.00 40.92 5.03
1863 2894 0.804989 GACCGCTGCTGCTTAATGTT 59.195 50.000 14.03 0.00 36.97 2.71
1864 2895 1.361668 CGACCGCTGCTGCTTAATGT 61.362 55.000 14.03 3.06 36.97 2.71
1876 2907 1.740285 CATAGGTAAGGCGACCGCT 59.260 57.895 14.25 0.00 44.88 5.52
1943 2974 1.605058 GCTGTTAGCCCTCAGACCGA 61.605 60.000 4.22 0.00 34.48 4.69
1945 2976 4.943822 GCTGTTAGCCCTCAGACC 57.056 61.111 4.22 0.00 34.48 3.85
1968 3077 2.017138 TTGTGACTTGCTCGTCAACA 57.983 45.000 9.65 8.07 44.73 3.33
1970 3079 1.330521 GCTTTGTGACTTGCTCGTCAA 59.669 47.619 9.65 0.45 44.73 3.18
1972 3081 1.193426 GAGCTTTGTGACTTGCTCGTC 59.807 52.381 8.60 0.00 41.67 4.20
1973 3082 1.221414 GAGCTTTGTGACTTGCTCGT 58.779 50.000 8.60 0.00 41.67 4.18
1997 3106 7.035004 CGGATAATTCCAATGCTCTTTTTGAA 58.965 34.615 0.00 0.00 42.74 2.69
1999 3108 6.332630 ACGGATAATTCCAATGCTCTTTTTG 58.667 36.000 0.00 0.00 42.74 2.44
2003 3112 3.809832 CGACGGATAATTCCAATGCTCTT 59.190 43.478 0.00 0.00 42.74 2.85
2045 3154 1.512734 GCGCTCAAATGTGGCTTCG 60.513 57.895 0.00 0.00 0.00 3.79
2056 3165 3.454587 AACTCGTGTGGGCGCTCAA 62.455 57.895 13.97 0.00 0.00 3.02
2083 3192 6.922957 TGATTCAACCTTTTCATGTAAACTGC 59.077 34.615 0.00 0.00 0.00 4.40
2095 3204 4.524328 GTGAGGGACATGATTCAACCTTTT 59.476 41.667 0.00 0.00 0.00 2.27
2096 3205 4.082125 GTGAGGGACATGATTCAACCTTT 58.918 43.478 0.00 0.00 0.00 3.11
2136 3245 3.068165 TCAGTAGAGCATACGATGGTTGG 59.932 47.826 0.00 0.00 41.77 3.77
2138 3247 6.650427 TTATCAGTAGAGCATACGATGGTT 57.350 37.500 0.00 0.00 41.77 3.67
2145 3254 5.122512 TCGCCTTTATCAGTAGAGCATAC 57.877 43.478 0.00 0.00 0.00 2.39
2153 3262 6.040504 TGAGCTCTAATTCGCCTTTATCAGTA 59.959 38.462 16.19 0.00 0.00 2.74
2161 3270 2.028112 TGTGTGAGCTCTAATTCGCCTT 60.028 45.455 16.19 0.00 0.00 4.35
2170 3279 5.679894 GCTTAAGTGCTATGTGTGAGCTCTA 60.680 44.000 16.19 0.75 41.60 2.43
2185 3294 1.330829 GTAATGCCCGAGCTTAAGTGC 59.669 52.381 4.02 0.86 40.80 4.40
2203 3313 3.390521 CCTCCGGTGCTGCAGGTA 61.391 66.667 17.12 0.00 33.92 3.08
2242 3352 0.181587 TGTTGTTTTCCGCTGAGGGA 59.818 50.000 0.00 0.00 41.52 4.20
2253 3363 1.206849 CCTTGCCCACTGTGTTGTTTT 59.793 47.619 7.08 0.00 0.00 2.43
2255 3365 1.675720 GCCTTGCCCACTGTGTTGTT 61.676 55.000 7.08 0.00 0.00 2.83
2259 3369 2.203394 CTGCCTTGCCCACTGTGT 60.203 61.111 7.08 0.00 0.00 3.72
2280 3390 1.374252 GTGGACAACTCGCCATCGT 60.374 57.895 0.00 0.00 36.41 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.