Multiple sequence alignment - TraesCS7D01G389100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G389100 chr7D 100.000 5352 0 0 1 5352 504255912 504250561 0.000000e+00 9884.0
1 TraesCS7D01G389100 chr7D 80.000 1205 204 29 3124 4293 504546076 504544874 0.000000e+00 856.0
2 TraesCS7D01G389100 chr7D 82.444 974 145 13 3342 4293 504521960 504520991 0.000000e+00 828.0
3 TraesCS7D01G389100 chr7D 81.874 982 152 18 3342 4304 504536390 504535416 0.000000e+00 804.0
4 TraesCS7D01G389100 chr7D 88.302 265 31 0 2133 2397 504537668 504537404 8.650000e-83 318.0
5 TraesCS7D01G389100 chr7D 93.158 190 13 0 3119 3308 504522220 504522031 4.080000e-71 279.0
6 TraesCS7D01G389100 chr7D 93.443 183 12 0 3124 3306 504536642 504536460 6.830000e-69 272.0
7 TraesCS7D01G389100 chr7D 85.660 265 20 8 2133 2397 504523585 504523339 4.110000e-66 263.0
8 TraesCS7D01G389100 chr7D 89.080 174 19 0 2133 2306 504762686 504762513 3.250000e-52 217.0
9 TraesCS7D01G389100 chr7D 87.975 158 17 2 2447 2602 504522895 504522738 9.150000e-43 185.0
10 TraesCS7D01G389100 chr7A 93.034 3388 161 34 2005 5352 571939309 571935957 0.000000e+00 4879.0
11 TraesCS7D01G389100 chr7A 93.344 1202 40 12 419 1590 571941191 571940000 0.000000e+00 1740.0
12 TraesCS7D01G389100 chr7A 81.874 982 152 19 3342 4304 572236563 572235589 0.000000e+00 804.0
13 TraesCS7D01G389100 chr7A 81.920 979 144 22 3342 4293 572182191 572181219 0.000000e+00 797.0
14 TraesCS7D01G389100 chr7A 94.982 279 10 2 1 279 571942250 571941976 8.230000e-118 435.0
15 TraesCS7D01G389100 chr7A 90.189 265 26 0 2133 2397 572184713 572184449 3.970000e-91 346.0
16 TraesCS7D01G389100 chr7A 87.547 265 33 0 2133 2397 572237844 572237580 1.870000e-79 307.0
17 TraesCS7D01G389100 chr7A 92.896 183 13 0 3124 3306 572236815 572236633 3.180000e-67 267.0
18 TraesCS7D01G389100 chr7A 92.222 180 14 0 3129 3308 572182441 572182262 6.880000e-64 255.0
19 TraesCS7D01G389100 chr7A 95.122 123 4 1 270 390 571941565 571941443 5.470000e-45 193.0
20 TraesCS7D01G389100 chr7A 90.210 143 10 2 2460 2602 572183106 572182968 3.290000e-42 183.0
21 TraesCS7D01G389100 chr7A 97.260 73 2 0 128 200 249586538 249586466 2.020000e-24 124.0
22 TraesCS7D01G389100 chr7B 93.758 2355 102 27 3013 5352 532290742 532288418 0.000000e+00 3493.0
23 TraesCS7D01G389100 chr7B 93.599 828 23 6 487 1291 532294547 532293727 0.000000e+00 1208.0
24 TraesCS7D01G389100 chr7B 92.497 733 24 8 2005 2707 532292124 532291393 0.000000e+00 1020.0
25 TraesCS7D01G389100 chr7B 95.052 485 21 3 1 485 532295114 532294633 0.000000e+00 760.0
26 TraesCS7D01G389100 chr7B 80.825 970 164 17 3343 4294 532462917 532461952 0.000000e+00 741.0
27 TraesCS7D01G389100 chr7B 80.922 629 112 8 3666 4288 532469033 532468407 1.730000e-134 490.0
28 TraesCS7D01G389100 chr7B 90.446 314 21 3 2704 3014 532291353 532291046 6.450000e-109 405.0
29 TraesCS7D01G389100 chr7B 94.275 262 10 1 1334 1590 532293729 532293468 3.880000e-106 396.0
30 TraesCS7D01G389100 chr7B 90.335 269 25 1 2130 2397 532483881 532483613 8.530000e-93 351.0
31 TraesCS7D01G389100 chr7B 87.547 265 33 0 2133 2397 532464398 532464134 1.870000e-79 307.0
32 TraesCS7D01G389100 chr7B 96.216 185 7 0 3124 3308 532482525 532482341 2.420000e-78 303.0
33 TraesCS7D01G389100 chr7B 92.708 192 13 1 3118 3308 532463176 532462985 5.280000e-70 276.0
34 TraesCS7D01G389100 chr7B 88.820 161 16 2 3342 3500 532482270 532482110 4.230000e-46 196.0
35 TraesCS7D01G389100 chr7B 85.714 189 15 9 2420 2602 532482835 532482653 7.080000e-44 189.0
36 TraesCS7D01G389100 chr7B 84.892 139 16 3 3537 3670 532481940 532481802 9.350000e-28 135.0
37 TraesCS7D01G389100 chr4A 89.447 199 10 3 1590 1788 674557052 674557239 1.930000e-59 241.0
38 TraesCS7D01G389100 chrUn 85.075 201 14 2 1589 1789 7876540 7876356 1.970000e-44 191.0
39 TraesCS7D01G389100 chrUn 91.837 49 4 0 1237 1285 36508558 36508606 9.620000e-08 69.4
40 TraesCS7D01G389100 chr6D 86.010 193 7 1 1595 1787 118812999 118813171 7.080000e-44 189.0
41 TraesCS7D01G389100 chr1D 85.354 198 12 4 1589 1786 298951280 298951100 7.080000e-44 189.0
42 TraesCS7D01G389100 chr5B 84.343 198 11 2 1590 1787 252228086 252228263 5.510000e-40 176.0
43 TraesCS7D01G389100 chr5B 89.333 75 8 0 127 201 633157944 633158018 1.590000e-15 95.3
44 TraesCS7D01G389100 chr2B 83.168 202 13 3 1590 1790 596102782 596102601 1.190000e-36 165.0
45 TraesCS7D01G389100 chr2B 82.412 199 14 2 1590 1787 770767889 770767711 2.580000e-33 154.0
46 TraesCS7D01G389100 chr3B 83.333 198 11 3 1590 1787 788207301 788207476 4.290000e-36 163.0
47 TraesCS7D01G389100 chr3B 97.333 75 2 0 125 199 623655787 623655861 1.560000e-25 128.0
48 TraesCS7D01G389100 chr3B 83.871 93 15 0 1468 1560 792858628 792858720 7.380000e-14 89.8
49 TraesCS7D01G389100 chr4D 92.453 106 7 1 1590 1695 6548239 6548343 3.340000e-32 150.0
50 TraesCS7D01G389100 chr2A 79.899 199 19 5 1590 1787 757957873 757957695 5.630000e-25 126.0
51 TraesCS7D01G389100 chr2A 90.667 75 7 0 1713 1787 10978795 10978721 3.410000e-17 100.0
52 TraesCS7D01G389100 chr3D 93.750 80 5 0 1708 1787 381633168 381633247 2.620000e-23 121.0
53 TraesCS7D01G389100 chr3D 94.805 77 4 0 126 202 553872148 553872072 2.620000e-23 121.0
54 TraesCS7D01G389100 chr1B 93.939 66 4 0 136 201 35471936 35472001 3.410000e-17 100.0
55 TraesCS7D01G389100 chr5D 91.549 71 6 0 128 198 341009836 341009906 1.230000e-16 99.0
56 TraesCS7D01G389100 chr1A 89.610 77 5 1 128 204 487185642 487185569 1.590000e-15 95.3
57 TraesCS7D01G389100 chr3A 82.692 104 18 0 1468 1571 722275754 722275857 5.710000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G389100 chr7D 504250561 504255912 5351 True 9884.000000 9884 100.000000 1 5352 1 chr7D.!!$R1 5351
1 TraesCS7D01G389100 chr7D 504544874 504546076 1202 True 856.000000 856 80.000000 3124 4293 1 chr7D.!!$R2 1169
2 TraesCS7D01G389100 chr7D 504535416 504537668 2252 True 464.666667 804 87.873000 2133 4304 3 chr7D.!!$R5 2171
3 TraesCS7D01G389100 chr7D 504520991 504523585 2594 True 388.750000 828 87.309250 2133 4293 4 chr7D.!!$R4 2160
4 TraesCS7D01G389100 chr7A 571935957 571942250 6293 True 1811.750000 4879 94.120500 1 5352 4 chr7A.!!$R2 5351
5 TraesCS7D01G389100 chr7A 572235589 572237844 2255 True 459.333333 804 87.439000 2133 4304 3 chr7A.!!$R4 2171
6 TraesCS7D01G389100 chr7A 572181219 572184713 3494 True 395.250000 797 88.635250 2133 4293 4 chr7A.!!$R3 2160
7 TraesCS7D01G389100 chr7B 532288418 532295114 6696 True 1213.666667 3493 93.271167 1 5352 6 chr7B.!!$R2 5351
8 TraesCS7D01G389100 chr7B 532468407 532469033 626 True 490.000000 490 80.922000 3666 4288 1 chr7B.!!$R1 622
9 TraesCS7D01G389100 chr7B 532461952 532464398 2446 True 441.333333 741 87.026667 2133 4294 3 chr7B.!!$R3 2161
10 TraesCS7D01G389100 chr7B 532481802 532483881 2079 True 234.800000 351 89.195400 2130 3670 5 chr7B.!!$R4 1540


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 755 0.653636 GCGCCGAAATCGTTTATCCA 59.346 50.0 0.00 0.0 37.74 3.41 F
1325 2113 0.530288 AGAGGAAAGAGAGAGCACGC 59.470 55.0 0.00 0.0 0.00 5.34 F
1328 2116 0.244994 GGAAAGAGAGAGCACGCAGA 59.755 55.0 0.00 0.0 0.00 4.26 F
2278 4266 0.318784 ACGTCAAGGACTGCGACTTC 60.319 55.0 0.00 0.0 0.00 3.01 F
2908 7208 0.455410 TGCAGATAACCAATTGCGCC 59.545 50.0 4.18 0.0 39.34 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 2115 0.029035 ATCCGTACAGCGACGTGATC 59.971 55.000 0.00 0.00 44.77 2.92 R
3225 7839 0.255318 CATCCCTTGAGGCTTGCTCT 59.745 55.000 0.00 0.00 34.51 4.09 R
3437 8093 1.976474 GAACAGATTTGCGGGCCCA 60.976 57.895 24.92 1.02 0.00 5.36 R
3926 8732 1.398390 GGTCGCCTTTGTTCTATGCAG 59.602 52.381 0.00 0.00 0.00 4.41 R
4917 9742 0.032130 TGAGTGACGTGCTGGTCTTC 59.968 55.000 0.00 7.27 37.81 2.87 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 120 2.564062 CCACATTTGAAGCCCAGACATT 59.436 45.455 0.00 0.00 0.00 2.71
204 205 2.680913 CCAAAGCCAAGAGTCGCCG 61.681 63.158 0.00 0.00 0.00 6.46
334 755 0.653636 GCGCCGAAATCGTTTATCCA 59.346 50.000 0.00 0.00 37.74 3.41
410 1066 3.947910 AGACAAATTGAACCATGGCTG 57.052 42.857 13.04 0.56 27.68 4.85
450 1109 4.202050 GGTTTATTGACATGCACATCCTCC 60.202 45.833 0.00 0.00 0.00 4.30
451 1110 4.508551 TTATTGACATGCACATCCTCCT 57.491 40.909 0.00 0.00 0.00 3.69
452 1111 2.408271 TTGACATGCACATCCTCCTC 57.592 50.000 0.00 0.00 0.00 3.71
485 1144 6.465781 GTGTACAACAAATACAATCGCTCATG 59.534 38.462 0.00 0.00 34.41 3.07
572 1315 9.208022 CATATCACGTGAAATATCAACTGGTAT 57.792 33.333 24.13 7.93 37.30 2.73
637 1386 7.682741 GCCAAATCAGCTAATGAATAAAGAGCA 60.683 37.037 0.00 0.00 42.53 4.26
810 1595 3.695816 GCCATAAATCGAGCAAGGAAAC 58.304 45.455 0.00 0.00 0.00 2.78
811 1596 3.128589 GCCATAAATCGAGCAAGGAAACA 59.871 43.478 0.00 0.00 0.00 2.83
885 1670 2.311688 ATACCCTCGCCTTTGCTCCG 62.312 60.000 0.00 0.00 34.43 4.63
1248 2036 2.375345 CGCCTACCCCATGGTCCTT 61.375 63.158 11.73 0.00 43.06 3.36
1325 2113 0.530288 AGAGGAAAGAGAGAGCACGC 59.470 55.000 0.00 0.00 0.00 5.34
1327 2115 0.246086 AGGAAAGAGAGAGCACGCAG 59.754 55.000 0.00 0.00 0.00 5.18
1328 2116 0.244994 GGAAAGAGAGAGCACGCAGA 59.755 55.000 0.00 0.00 0.00 4.26
1329 2117 1.134848 GGAAAGAGAGAGCACGCAGAT 60.135 52.381 0.00 0.00 0.00 2.90
1586 2379 3.402628 AGGTAAACCGCATAGGCATAG 57.597 47.619 0.00 0.00 46.52 2.23
1587 2380 2.038557 AGGTAAACCGCATAGGCATAGG 59.961 50.000 0.00 0.00 46.52 2.57
1588 2381 1.804748 GTAAACCGCATAGGCATAGGC 59.195 52.381 4.72 4.72 46.52 3.93
1594 2387 2.743636 GCATAGGCATAGGCGAGTAA 57.256 50.000 0.00 0.00 42.47 2.24
1595 2388 2.338500 GCATAGGCATAGGCGAGTAAC 58.662 52.381 0.00 0.00 42.47 2.50
1596 2389 2.596452 CATAGGCATAGGCGAGTAACG 58.404 52.381 0.00 0.00 42.47 3.18
1617 2410 5.169688 CGCTACACGTACAAAAGAGTTAC 57.830 43.478 0.00 0.00 36.87 2.50
1618 2411 4.676471 CGCTACACGTACAAAAGAGTTACA 59.324 41.667 0.00 0.00 36.87 2.41
1619 2412 5.173673 CGCTACACGTACAAAAGAGTTACAA 59.826 40.000 0.00 0.00 36.87 2.41
1620 2413 6.578691 GCTACACGTACAAAAGAGTTACAAG 58.421 40.000 0.00 0.00 0.00 3.16
1621 2414 5.978934 ACACGTACAAAAGAGTTACAAGG 57.021 39.130 0.00 0.00 0.00 3.61
1622 2415 5.422145 ACACGTACAAAAGAGTTACAAGGT 58.578 37.500 0.00 0.00 0.00 3.50
1623 2416 5.876460 ACACGTACAAAAGAGTTACAAGGTT 59.124 36.000 0.00 0.00 0.00 3.50
1624 2417 6.372381 ACACGTACAAAAGAGTTACAAGGTTT 59.628 34.615 0.00 0.00 0.00 3.27
1625 2418 7.094677 ACACGTACAAAAGAGTTACAAGGTTTT 60.095 33.333 0.00 0.00 0.00 2.43
1626 2419 8.389603 CACGTACAAAAGAGTTACAAGGTTTTA 58.610 33.333 0.00 0.00 0.00 1.52
1627 2420 8.390354 ACGTACAAAAGAGTTACAAGGTTTTAC 58.610 33.333 0.00 0.00 0.00 2.01
1628 2421 8.389603 CGTACAAAAGAGTTACAAGGTTTTACA 58.610 33.333 0.00 0.00 0.00 2.41
1631 2424 9.634163 ACAAAAGAGTTACAAGGTTTTACAAAG 57.366 29.630 0.00 0.00 0.00 2.77
1632 2425 9.849166 CAAAAGAGTTACAAGGTTTTACAAAGA 57.151 29.630 0.00 0.00 0.00 2.52
1635 2428 8.221965 AGAGTTACAAGGTTTTACAAAGAAGG 57.778 34.615 0.00 0.00 0.00 3.46
1636 2429 7.832685 AGAGTTACAAGGTTTTACAAAGAAGGT 59.167 33.333 0.00 0.00 0.00 3.50
1637 2430 8.357290 AGTTACAAGGTTTTACAAAGAAGGTT 57.643 30.769 0.00 0.00 0.00 3.50
1638 2431 9.465199 AGTTACAAGGTTTTACAAAGAAGGTTA 57.535 29.630 0.00 0.00 0.00 2.85
1641 2434 8.357290 ACAAGGTTTTACAAAGAAGGTTAACT 57.643 30.769 5.42 0.00 0.00 2.24
1642 2435 8.809066 ACAAGGTTTTACAAAGAAGGTTAACTT 58.191 29.630 5.42 0.00 43.65 2.66
1643 2436 9.083080 CAAGGTTTTACAAAGAAGGTTAACTTG 57.917 33.333 5.42 4.40 40.21 3.16
1644 2437 8.584063 AGGTTTTACAAAGAAGGTTAACTTGA 57.416 30.769 5.42 0.00 40.21 3.02
1645 2438 9.197306 AGGTTTTACAAAGAAGGTTAACTTGAT 57.803 29.630 5.42 0.00 40.21 2.57
1646 2439 9.811995 GGTTTTACAAAGAAGGTTAACTTGATT 57.188 29.630 5.42 0.00 40.21 2.57
1648 2441 9.810545 TTTTACAAAGAAGGTTAACTTGATTGG 57.189 29.630 5.42 0.00 40.21 3.16
1649 2442 8.528044 TTACAAAGAAGGTTAACTTGATTGGT 57.472 30.769 5.42 3.43 40.21 3.67
1650 2443 7.039313 ACAAAGAAGGTTAACTTGATTGGTC 57.961 36.000 5.42 0.00 40.21 4.02
1651 2444 6.605594 ACAAAGAAGGTTAACTTGATTGGTCA 59.394 34.615 5.42 0.00 40.21 4.02
1652 2445 7.123547 ACAAAGAAGGTTAACTTGATTGGTCAA 59.876 33.333 5.42 0.00 40.21 3.18
1653 2446 7.839680 AAGAAGGTTAACTTGATTGGTCAAT 57.160 32.000 5.42 0.00 43.08 2.57
1654 2447 8.934023 AAGAAGGTTAACTTGATTGGTCAATA 57.066 30.769 5.42 0.00 43.08 1.90
1655 2448 8.567285 AGAAGGTTAACTTGATTGGTCAATAG 57.433 34.615 5.42 0.00 43.08 1.73
1656 2449 7.611855 AGAAGGTTAACTTGATTGGTCAATAGG 59.388 37.037 5.42 0.00 43.08 2.57
1657 2450 6.790319 AGGTTAACTTGATTGGTCAATAGGT 58.210 36.000 5.42 0.00 43.08 3.08
1658 2451 6.659242 AGGTTAACTTGATTGGTCAATAGGTG 59.341 38.462 5.42 0.00 43.08 4.00
1659 2452 6.657541 GGTTAACTTGATTGGTCAATAGGTGA 59.342 38.462 5.42 0.00 43.08 4.02
1660 2453 7.148239 GGTTAACTTGATTGGTCAATAGGTGAG 60.148 40.741 5.42 0.00 43.08 3.51
1661 2454 4.848357 ACTTGATTGGTCAATAGGTGAGG 58.152 43.478 0.00 0.00 43.08 3.86
1662 2455 4.536090 ACTTGATTGGTCAATAGGTGAGGA 59.464 41.667 0.00 0.00 43.08 3.71
1663 2456 5.014123 ACTTGATTGGTCAATAGGTGAGGAA 59.986 40.000 0.00 0.00 43.08 3.36
1664 2457 4.843728 TGATTGGTCAATAGGTGAGGAAC 58.156 43.478 0.00 0.00 36.74 3.62
1665 2458 4.288366 TGATTGGTCAATAGGTGAGGAACA 59.712 41.667 0.00 0.00 36.74 3.18
1666 2459 4.927267 TTGGTCAATAGGTGAGGAACAT 57.073 40.909 0.00 0.00 36.74 2.71
1667 2460 4.220693 TGGTCAATAGGTGAGGAACATG 57.779 45.455 0.00 0.00 36.74 3.21
1668 2461 3.054434 TGGTCAATAGGTGAGGAACATGG 60.054 47.826 0.00 0.00 36.74 3.66
1669 2462 2.945668 GTCAATAGGTGAGGAACATGGC 59.054 50.000 0.00 0.00 36.74 4.40
1670 2463 2.092429 TCAATAGGTGAGGAACATGGCC 60.092 50.000 0.00 0.00 0.00 5.36
1671 2464 0.846693 ATAGGTGAGGAACATGGCCC 59.153 55.000 0.00 0.00 0.00 5.80
1672 2465 0.548926 TAGGTGAGGAACATGGCCCA 60.549 55.000 0.00 0.00 0.00 5.36
1673 2466 1.678970 GGTGAGGAACATGGCCCAC 60.679 63.158 0.00 14.45 0.00 4.61
1674 2467 1.678970 GTGAGGAACATGGCCCACC 60.679 63.158 0.00 0.00 0.00 4.61
1675 2468 2.043953 GAGGAACATGGCCCACCC 60.044 66.667 0.00 0.00 33.59 4.61
1676 2469 3.662117 GAGGAACATGGCCCACCCC 62.662 68.421 0.00 0.00 33.59 4.95
1677 2470 3.672503 GGAACATGGCCCACCCCT 61.673 66.667 0.00 0.00 33.59 4.79
1678 2471 2.043953 GAACATGGCCCACCCCTC 60.044 66.667 0.00 0.00 33.59 4.30
1679 2472 2.535317 AACATGGCCCACCCCTCT 60.535 61.111 0.00 0.00 33.59 3.69
1680 2473 1.230149 AACATGGCCCACCCCTCTA 60.230 57.895 0.00 0.00 33.59 2.43
1681 2474 0.849094 AACATGGCCCACCCCTCTAA 60.849 55.000 0.00 0.00 33.59 2.10
1682 2475 0.849094 ACATGGCCCACCCCTCTAAA 60.849 55.000 0.00 0.00 33.59 1.85
1683 2476 0.334676 CATGGCCCACCCCTCTAAAA 59.665 55.000 0.00 0.00 33.59 1.52
1684 2477 1.089123 ATGGCCCACCCCTCTAAAAA 58.911 50.000 0.00 0.00 33.59 1.94
1685 2478 1.089123 TGGCCCACCCCTCTAAAAAT 58.911 50.000 0.00 0.00 33.59 1.82
1686 2479 1.006639 TGGCCCACCCCTCTAAAAATC 59.993 52.381 0.00 0.00 33.59 2.17
1687 2480 1.006639 GGCCCACCCCTCTAAAAATCA 59.993 52.381 0.00 0.00 0.00 2.57
1688 2481 2.379005 GCCCACCCCTCTAAAAATCAG 58.621 52.381 0.00 0.00 0.00 2.90
1689 2482 2.025321 GCCCACCCCTCTAAAAATCAGA 60.025 50.000 0.00 0.00 0.00 3.27
1690 2483 3.891049 CCCACCCCTCTAAAAATCAGAG 58.109 50.000 0.00 0.00 39.44 3.35
1729 2522 2.745968 GGGGGCAAGTTTATGATTGGA 58.254 47.619 0.00 0.00 0.00 3.53
1730 2523 3.308401 GGGGGCAAGTTTATGATTGGAT 58.692 45.455 0.00 0.00 0.00 3.41
1731 2524 4.479158 GGGGGCAAGTTTATGATTGGATA 58.521 43.478 0.00 0.00 0.00 2.59
1732 2525 4.280929 GGGGGCAAGTTTATGATTGGATAC 59.719 45.833 0.00 0.00 0.00 2.24
1733 2526 5.140454 GGGGCAAGTTTATGATTGGATACT 58.860 41.667 0.00 0.00 37.61 2.12
1734 2527 6.303839 GGGGCAAGTTTATGATTGGATACTA 58.696 40.000 0.00 0.00 37.61 1.82
1735 2528 6.431234 GGGGCAAGTTTATGATTGGATACTAG 59.569 42.308 0.00 0.00 37.61 2.57
1736 2529 7.224297 GGGCAAGTTTATGATTGGATACTAGA 58.776 38.462 0.00 0.00 37.61 2.43
1737 2530 7.885399 GGGCAAGTTTATGATTGGATACTAGAT 59.115 37.037 0.00 0.00 37.61 1.98
1738 2531 8.725148 GGCAAGTTTATGATTGGATACTAGATG 58.275 37.037 0.00 0.00 37.61 2.90
1739 2532 9.494271 GCAAGTTTATGATTGGATACTAGATGA 57.506 33.333 0.00 0.00 37.61 2.92
1747 2540 7.957002 TGATTGGATACTAGATGAAGAGAACC 58.043 38.462 0.00 0.00 37.61 3.62
1748 2541 7.786943 TGATTGGATACTAGATGAAGAGAACCT 59.213 37.037 0.00 0.00 37.61 3.50
1749 2542 6.968263 TGGATACTAGATGAAGAGAACCTG 57.032 41.667 0.00 0.00 37.61 4.00
1750 2543 6.436027 TGGATACTAGATGAAGAGAACCTGT 58.564 40.000 0.00 0.00 37.61 4.00
1751 2544 7.583625 TGGATACTAGATGAAGAGAACCTGTA 58.416 38.462 0.00 0.00 37.61 2.74
1752 2545 8.059461 TGGATACTAGATGAAGAGAACCTGTAA 58.941 37.037 0.00 0.00 37.61 2.41
1753 2546 8.915036 GGATACTAGATGAAGAGAACCTGTAAA 58.085 37.037 0.00 0.00 0.00 2.01
1757 2550 8.261522 ACTAGATGAAGAGAACCTGTAAAATCC 58.738 37.037 0.00 0.00 0.00 3.01
1758 2551 7.264294 AGATGAAGAGAACCTGTAAAATCCT 57.736 36.000 0.00 0.00 0.00 3.24
1759 2552 7.108847 AGATGAAGAGAACCTGTAAAATCCTG 58.891 38.462 0.00 0.00 0.00 3.86
1760 2553 6.187727 TGAAGAGAACCTGTAAAATCCTGT 57.812 37.500 0.00 0.00 0.00 4.00
1761 2554 7.311092 TGAAGAGAACCTGTAAAATCCTGTA 57.689 36.000 0.00 0.00 0.00 2.74
1762 2555 7.918076 TGAAGAGAACCTGTAAAATCCTGTAT 58.082 34.615 0.00 0.00 0.00 2.29
1763 2556 8.383175 TGAAGAGAACCTGTAAAATCCTGTATT 58.617 33.333 0.00 0.00 0.00 1.89
1764 2557 8.794335 AAGAGAACCTGTAAAATCCTGTATTC 57.206 34.615 0.00 0.00 0.00 1.75
1765 2558 8.152023 AGAGAACCTGTAAAATCCTGTATTCT 57.848 34.615 0.00 0.00 0.00 2.40
1766 2559 8.606830 AGAGAACCTGTAAAATCCTGTATTCTT 58.393 33.333 0.00 0.00 0.00 2.52
1767 2560 9.232473 GAGAACCTGTAAAATCCTGTATTCTTT 57.768 33.333 0.00 0.00 0.00 2.52
1768 2561 9.588096 AGAACCTGTAAAATCCTGTATTCTTTT 57.412 29.630 0.00 0.00 0.00 2.27
1769 2562 9.626045 GAACCTGTAAAATCCTGTATTCTTTTG 57.374 33.333 0.00 0.00 0.00 2.44
1770 2563 8.706322 ACCTGTAAAATCCTGTATTCTTTTGT 57.294 30.769 0.00 0.00 0.00 2.83
1771 2564 9.802039 ACCTGTAAAATCCTGTATTCTTTTGTA 57.198 29.630 0.00 0.00 0.00 2.41
1773 2566 9.755064 CTGTAAAATCCTGTATTCTTTTGTACG 57.245 33.333 0.00 0.00 0.00 3.67
1774 2567 9.275398 TGTAAAATCCTGTATTCTTTTGTACGT 57.725 29.630 0.00 0.00 0.00 3.57
1775 2568 9.750882 GTAAAATCCTGTATTCTTTTGTACGTC 57.249 33.333 0.00 0.00 0.00 4.34
1776 2569 8.617290 AAAATCCTGTATTCTTTTGTACGTCT 57.383 30.769 0.00 0.00 0.00 4.18
1777 2570 9.715121 AAAATCCTGTATTCTTTTGTACGTCTA 57.285 29.630 0.00 0.00 0.00 2.59
1778 2571 8.928270 AATCCTGTATTCTTTTGTACGTCTAG 57.072 34.615 0.00 0.00 0.00 2.43
1779 2572 6.327934 TCCTGTATTCTTTTGTACGTCTAGC 58.672 40.000 0.00 0.00 0.00 3.42
1780 2573 6.071784 TCCTGTATTCTTTTGTACGTCTAGCA 60.072 38.462 0.00 0.00 0.00 3.49
1781 2574 6.757010 CCTGTATTCTTTTGTACGTCTAGCAT 59.243 38.462 0.00 0.00 0.00 3.79
1782 2575 7.277981 CCTGTATTCTTTTGTACGTCTAGCATT 59.722 37.037 0.00 0.00 0.00 3.56
1783 2576 8.542497 TGTATTCTTTTGTACGTCTAGCATTT 57.458 30.769 0.00 0.00 0.00 2.32
1784 2577 8.995220 TGTATTCTTTTGTACGTCTAGCATTTT 58.005 29.630 0.00 0.00 0.00 1.82
1785 2578 9.821662 GTATTCTTTTGTACGTCTAGCATTTTT 57.178 29.630 0.00 0.00 0.00 1.94
1786 2579 8.728088 ATTCTTTTGTACGTCTAGCATTTTTG 57.272 30.769 0.00 0.00 0.00 2.44
1787 2580 6.664515 TCTTTTGTACGTCTAGCATTTTTGG 58.335 36.000 0.00 0.00 0.00 3.28
1788 2581 5.365403 TTTGTACGTCTAGCATTTTTGGG 57.635 39.130 0.00 0.00 0.00 4.12
1789 2582 2.745281 TGTACGTCTAGCATTTTTGGGC 59.255 45.455 0.00 0.00 0.00 5.36
1790 2583 2.200373 ACGTCTAGCATTTTTGGGCT 57.800 45.000 0.00 0.00 43.94 5.19
1795 2588 3.439129 GTCTAGCATTTTTGGGCTTACGT 59.561 43.478 0.00 0.00 41.41 3.57
1799 2592 2.327568 CATTTTTGGGCTTACGTGCAG 58.672 47.619 0.00 0.00 34.04 4.41
1824 2617 7.669722 AGAAACCATTAGCATTTTCTCCAACTA 59.330 33.333 0.00 0.00 33.94 2.24
1829 2622 4.373156 AGCATTTTCTCCAACTACCAGT 57.627 40.909 0.00 0.00 0.00 4.00
1833 2626 5.122396 GCATTTTCTCCAACTACCAGTACAG 59.878 44.000 0.00 0.00 0.00 2.74
1834 2627 6.464222 CATTTTCTCCAACTACCAGTACAGA 58.536 40.000 0.00 0.00 0.00 3.41
1835 2628 6.488769 TTTTCTCCAACTACCAGTACAGAA 57.511 37.500 0.00 0.00 0.00 3.02
1836 2629 6.488769 TTTCTCCAACTACCAGTACAGAAA 57.511 37.500 0.00 0.00 30.88 2.52
1837 2630 6.681729 TTCTCCAACTACCAGTACAGAAAT 57.318 37.500 0.00 0.00 0.00 2.17
1838 2631 6.282199 TCTCCAACTACCAGTACAGAAATC 57.718 41.667 0.00 0.00 0.00 2.17
1839 2632 5.187186 TCTCCAACTACCAGTACAGAAATCC 59.813 44.000 0.00 0.00 0.00 3.01
1840 2633 4.224370 TCCAACTACCAGTACAGAAATCCC 59.776 45.833 0.00 0.00 0.00 3.85
1841 2634 4.019681 CCAACTACCAGTACAGAAATCCCA 60.020 45.833 0.00 0.00 0.00 4.37
1842 2635 5.339200 CCAACTACCAGTACAGAAATCCCAT 60.339 44.000 0.00 0.00 0.00 4.00
1843 2636 6.180472 CAACTACCAGTACAGAAATCCCATT 58.820 40.000 0.00 0.00 0.00 3.16
1844 2637 5.990668 ACTACCAGTACAGAAATCCCATTC 58.009 41.667 0.00 0.00 0.00 2.67
1845 2638 4.236527 ACCAGTACAGAAATCCCATTCC 57.763 45.455 0.00 0.00 0.00 3.01
1846 2639 3.852578 ACCAGTACAGAAATCCCATTCCT 59.147 43.478 0.00 0.00 0.00 3.36
1847 2640 5.036916 ACCAGTACAGAAATCCCATTCCTA 58.963 41.667 0.00 0.00 0.00 2.94
1848 2641 5.104485 ACCAGTACAGAAATCCCATTCCTAC 60.104 44.000 0.00 0.00 0.00 3.18
1849 2642 5.050490 CAGTACAGAAATCCCATTCCTACG 58.950 45.833 0.00 0.00 0.00 3.51
1850 2643 4.715297 AGTACAGAAATCCCATTCCTACGT 59.285 41.667 0.00 0.00 0.00 3.57
1851 2644 5.895534 AGTACAGAAATCCCATTCCTACGTA 59.104 40.000 0.00 0.00 0.00 3.57
1852 2645 5.019785 ACAGAAATCCCATTCCTACGTAC 57.980 43.478 0.00 0.00 0.00 3.67
1853 2646 4.049186 CAGAAATCCCATTCCTACGTACG 58.951 47.826 15.01 15.01 0.00 3.67
1854 2647 2.521105 AATCCCATTCCTACGTACGC 57.479 50.000 16.72 0.00 0.00 4.42
1855 2648 0.677842 ATCCCATTCCTACGTACGCC 59.322 55.000 16.72 0.00 0.00 5.68
1856 2649 0.396139 TCCCATTCCTACGTACGCCT 60.396 55.000 16.72 0.00 0.00 5.52
1857 2650 0.462789 CCCATTCCTACGTACGCCTT 59.537 55.000 16.72 0.00 0.00 4.35
1858 2651 1.537562 CCCATTCCTACGTACGCCTTC 60.538 57.143 16.72 0.00 0.00 3.46
1859 2652 1.407979 CCATTCCTACGTACGCCTTCT 59.592 52.381 16.72 0.00 0.00 2.85
1860 2653 2.620115 CCATTCCTACGTACGCCTTCTA 59.380 50.000 16.72 0.00 0.00 2.10
1861 2654 3.549625 CCATTCCTACGTACGCCTTCTAC 60.550 52.174 16.72 0.00 0.00 2.59
1862 2655 2.401583 TCCTACGTACGCCTTCTACA 57.598 50.000 16.72 0.00 0.00 2.74
1863 2656 2.283298 TCCTACGTACGCCTTCTACAG 58.717 52.381 16.72 0.00 0.00 2.74
1864 2657 2.093500 TCCTACGTACGCCTTCTACAGA 60.093 50.000 16.72 0.00 0.00 3.41
1865 2658 2.679837 CCTACGTACGCCTTCTACAGAA 59.320 50.000 16.72 0.00 0.00 3.02
1893 2686 9.189723 GTTTACGTATCCATAAGATTGAGGTAC 57.810 37.037 0.00 0.00 36.33 3.34
1911 2704 7.442656 TGAGGTACTTCAGACTTTCCTTTTAG 58.557 38.462 3.11 0.00 41.55 1.85
1918 2711 3.564225 CAGACTTTCCTTTTAGCGTGGTT 59.436 43.478 0.00 0.00 0.00 3.67
1919 2712 4.036380 CAGACTTTCCTTTTAGCGTGGTTT 59.964 41.667 0.00 0.00 0.00 3.27
1920 2713 4.275196 AGACTTTCCTTTTAGCGTGGTTTC 59.725 41.667 0.00 0.00 0.00 2.78
1961 2755 4.093408 CAGAAGCATGTATACACGCACTTT 59.907 41.667 24.33 11.14 37.55 2.66
1963 2757 2.677836 AGCATGTATACACGCACTTTGG 59.322 45.455 24.33 1.00 37.55 3.28
1964 2758 2.791158 GCATGTATACACGCACTTTGGC 60.791 50.000 18.47 3.47 34.84 4.52
1967 2762 3.078097 TGTATACACGCACTTTGGCATT 58.922 40.909 0.08 0.00 0.00 3.56
1979 2774 4.212425 CACTTTGGCATTTCAGTACACGTA 59.788 41.667 0.00 0.00 0.00 3.57
1997 2792 7.074507 ACACGTACAGTTGTTTGTTGAATTA 57.925 32.000 0.00 0.00 32.56 1.40
1998 2793 7.528307 ACACGTACAGTTGTTTGTTGAATTAA 58.472 30.769 0.00 0.00 32.56 1.40
2000 2795 9.653067 CACGTACAGTTGTTTGTTGAATTAATA 57.347 29.630 0.00 0.00 32.56 0.98
2001 2796 9.654417 ACGTACAGTTGTTTGTTGAATTAATAC 57.346 29.630 0.00 0.00 32.56 1.89
2002 2797 9.109533 CGTACAGTTGTTTGTTGAATTAATACC 57.890 33.333 0.00 0.00 32.56 2.73
2003 2798 9.953697 GTACAGTTGTTTGTTGAATTAATACCA 57.046 29.630 0.00 0.00 32.56 3.25
2116 4095 0.605319 TGCACGGGTCCTGATGTTTC 60.605 55.000 4.16 0.00 0.00 2.78
2278 4266 0.318784 ACGTCAAGGACTGCGACTTC 60.319 55.000 0.00 0.00 0.00 3.01
2281 4269 1.068748 GTCAAGGACTGCGACTTCGTA 60.069 52.381 0.00 0.00 42.22 3.43
2369 4357 3.976490 AACCCCGAGATCGCCCTCA 62.976 63.158 0.00 0.00 38.18 3.86
2457 6536 2.756760 ACTGCATGGTGATGACATTTCC 59.243 45.455 0.00 0.00 0.00 3.13
2462 6541 2.170166 TGGTGATGACATTTCCCTTGC 58.830 47.619 7.18 0.00 0.00 4.01
2629 6724 9.669353 AAACATTTGATCTCGCAATATATGAAC 57.331 29.630 0.00 0.00 0.00 3.18
2657 6752 3.368739 CCATTTTCATTTGTGAGGCCTCC 60.369 47.826 29.95 20.55 0.00 4.30
2678 6852 5.593010 TCCGTGTTTCCTTTTTACCAATTG 58.407 37.500 0.00 0.00 0.00 2.32
2684 6858 6.642950 TGTTTCCTTTTTACCAATTGTATGCG 59.357 34.615 4.43 0.00 0.00 4.73
2686 6860 7.450124 TTCCTTTTTACCAATTGTATGCGTA 57.550 32.000 4.43 0.00 0.00 4.42
2741 7022 5.486735 AAGGAAACATGGCATCAAATCAA 57.513 34.783 0.00 0.00 0.00 2.57
2789 7071 2.790433 TCAGTGTACCATTTGCCTTCC 58.210 47.619 0.00 0.00 0.00 3.46
2792 7074 1.883926 GTGTACCATTTGCCTTCCGTT 59.116 47.619 0.00 0.00 0.00 4.44
2844 7144 7.778382 GGAAACCAAGGGACACAATAGTATTAT 59.222 37.037 0.00 0.00 0.00 1.28
2845 7145 9.185680 GAAACCAAGGGACACAATAGTATTATT 57.814 33.333 0.00 0.00 0.00 1.40
2889 7189 7.056006 TGCAACATGATCAGAGTTACCATTAT 58.944 34.615 13.95 0.00 0.00 1.28
2898 7198 8.839310 ATCAGAGTTACCATTATGCAGATAAC 57.161 34.615 0.00 0.00 0.00 1.89
2908 7208 0.455410 TGCAGATAACCAATTGCGCC 59.545 50.000 4.18 0.00 39.34 6.53
2945 7245 1.605058 GCAGCTCTAGGTCCAACCGA 61.605 60.000 0.00 0.00 44.90 4.69
3001 7301 8.421002 TGATCGAGATAACACAATTGAAGGATA 58.579 33.333 13.59 1.13 0.00 2.59
3010 7316 7.552050 ACACAATTGAAGGATAAAATTCCCA 57.448 32.000 13.59 0.00 36.35 4.37
3030 7641 9.981460 ATTCCCAATATATATTTTCCTGGAGTC 57.019 33.333 5.18 0.00 0.00 3.36
3034 7645 9.224267 CCAATATATATTTTCCTGGAGTCACTG 57.776 37.037 5.18 0.00 0.00 3.66
3051 7662 7.254966 GGAGTCACTGACAGATAGTAGTACATG 60.255 44.444 10.08 0.00 34.60 3.21
3061 7672 7.147655 ACAGATAGTAGTACATGCTTGACCATT 60.148 37.037 6.60 0.00 0.00 3.16
3127 7741 9.508567 GATCCTTCTTAACATGCAAAATACTTC 57.491 33.333 0.00 0.00 0.00 3.01
3225 7839 0.837691 AGACATGGACCTGGCAGTCA 60.838 55.000 14.43 9.15 38.59 3.41
3437 8093 2.621338 CAGCAACATAGATGGTCGTGT 58.379 47.619 0.00 0.00 0.00 4.49
3491 8147 7.174413 TGATGGAGATTGTCAAAAATCAGGTA 58.826 34.615 0.00 0.00 38.74 3.08
3678 8472 0.698238 ACTGCCTTGTTATCCCAGCA 59.302 50.000 0.00 0.00 0.00 4.41
3729 8523 4.472108 CCAAGGTGGGGTTACTTCTACATA 59.528 45.833 0.00 0.00 32.67 2.29
3926 8732 5.679734 ACTGTTTGAGAATGTCATGTCAC 57.320 39.130 0.00 0.00 34.17 3.67
4275 9083 1.068417 CTTTGTCGTCGGTGTGGGA 59.932 57.895 0.00 0.00 0.00 4.37
4314 9122 2.487934 CCCAACTGATAATGCTCTCCG 58.512 52.381 0.00 0.00 0.00 4.63
4335 9143 3.424302 CGTTCATGGTGTAATGTTGTCCG 60.424 47.826 0.00 0.00 0.00 4.79
4354 9162 4.753107 GTCCGGAAAGATTCAGTGTAACAA 59.247 41.667 5.23 0.00 41.43 2.83
4513 9326 5.740406 TCGTTTGTCCGAAAAGAATAACAC 58.260 37.500 0.00 0.00 33.15 3.32
4575 9388 4.074799 TGTGGGAAGAGGAGGAAATAGA 57.925 45.455 0.00 0.00 0.00 1.98
4595 9408 0.312102 GTCTGGTGCCTCAACTTTGC 59.688 55.000 0.00 0.00 0.00 3.68
4596 9409 0.823356 TCTGGTGCCTCAACTTTGCC 60.823 55.000 0.00 0.00 0.00 4.52
4597 9410 1.809567 CTGGTGCCTCAACTTTGCCC 61.810 60.000 0.00 0.00 0.00 5.36
4598 9411 1.832167 GGTGCCTCAACTTTGCCCA 60.832 57.895 0.00 0.00 0.00 5.36
4599 9412 1.363807 GTGCCTCAACTTTGCCCAC 59.636 57.895 0.00 0.00 0.00 4.61
4600 9413 1.832167 TGCCTCAACTTTGCCCACC 60.832 57.895 0.00 0.00 0.00 4.61
4601 9414 1.531602 GCCTCAACTTTGCCCACCT 60.532 57.895 0.00 0.00 0.00 4.00
4602 9415 1.809567 GCCTCAACTTTGCCCACCTG 61.810 60.000 0.00 0.00 0.00 4.00
4603 9416 0.178992 CCTCAACTTTGCCCACCTGA 60.179 55.000 0.00 0.00 0.00 3.86
4604 9417 1.548582 CCTCAACTTTGCCCACCTGAT 60.549 52.381 0.00 0.00 0.00 2.90
4605 9418 2.290896 CCTCAACTTTGCCCACCTGATA 60.291 50.000 0.00 0.00 0.00 2.15
4606 9419 3.012518 CTCAACTTTGCCCACCTGATAG 58.987 50.000 0.00 0.00 0.00 2.08
4607 9420 2.094675 CAACTTTGCCCACCTGATAGG 58.905 52.381 0.00 0.00 42.49 2.57
4693 9517 9.745018 CATAATTTATATCTCCCCTGTCAATGT 57.255 33.333 0.00 0.00 0.00 2.71
4776 9600 0.251787 TGGCACTAGCTGACCTGAGA 60.252 55.000 0.00 0.00 41.70 3.27
4865 9689 2.814805 AACATCCCCTTCAGATGGTG 57.185 50.000 5.80 0.00 44.45 4.17
4976 9802 2.285773 ACATCTCCGACCAGCAGCA 61.286 57.895 0.00 0.00 0.00 4.41
4979 9805 0.179062 ATCTCCGACCAGCAGCAATC 60.179 55.000 0.00 0.00 0.00 2.67
4985 9811 3.126879 CCAGCAGCAATCGCCGAA 61.127 61.111 0.00 0.00 39.83 4.30
4988 9814 3.803082 GCAGCAATCGCCGAAGCA 61.803 61.111 15.61 0.00 39.83 3.91
4989 9815 2.402388 CAGCAATCGCCGAAGCAG 59.598 61.111 15.61 5.47 39.83 4.24
4996 9825 0.464036 ATCGCCGAAGCAGTCCATAA 59.536 50.000 0.00 0.00 39.83 1.90
5181 10010 3.425122 CATGGCCTCATGCATACCA 57.575 52.632 3.32 5.60 43.44 3.25
5186 10015 0.538977 GCCTCATGCATACCAGCCAT 60.539 55.000 0.00 0.00 40.77 4.40
5232 10061 2.050714 GTGTTCGCGAGGACGACA 60.051 61.111 9.59 7.81 44.80 4.35
5241 10070 0.456221 CGAGGACGACATACTTGCCT 59.544 55.000 0.00 0.00 42.66 4.75
5269 10098 2.331265 GGTTGCAGCCGAAAGAAGT 58.669 52.632 2.95 0.00 0.00 3.01
5272 10101 2.116736 TTGCAGCCGAAAGAAGTGCG 62.117 55.000 0.00 0.00 36.92 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
201 202 1.078356 GAAGAACTCTTCCCCCGGC 60.078 63.158 8.07 0.00 44.93 6.13
209 210 4.279420 GGCTTCAAATGTGGAAGAACTCTT 59.721 41.667 6.35 0.00 43.46 2.85
410 1066 7.389053 TCAATAAACCCAATTAATGTGTTTGCC 59.611 33.333 15.25 0.00 39.50 4.52
450 1109 8.716646 TGTATTTGTTGTACACATGGATAGAG 57.283 34.615 0.00 0.00 34.43 2.43
451 1110 9.679661 ATTGTATTTGTTGTACACATGGATAGA 57.320 29.630 0.00 0.00 34.43 1.98
452 1111 9.935682 GATTGTATTTGTTGTACACATGGATAG 57.064 33.333 0.00 0.00 34.43 2.08
485 1144 6.102897 TCAGTCTAATTAGGCCTAGATTGC 57.897 41.667 16.99 12.14 33.92 3.56
572 1315 3.719173 TCGTGCACGATATGGTCAATA 57.281 42.857 36.40 11.37 44.22 1.90
598 1341 6.364701 AGCTGATTTGGCTATATTGGTTGTA 58.635 36.000 0.00 0.00 38.36 2.41
810 1595 3.766691 CGTCGGGTAGGGGTGGTG 61.767 72.222 0.00 0.00 0.00 4.17
828 1613 3.917760 GAGGGACGGAGGCGATGG 61.918 72.222 0.00 0.00 0.00 3.51
885 1670 2.032681 GTCAGGGTGCTGGTGGTC 59.967 66.667 0.00 0.00 0.00 4.02
947 1735 3.988517 AGTAAACTAGCAGCGACAAGAAC 59.011 43.478 0.00 0.00 0.00 3.01
1248 2036 2.238646 GTTGTACATGGGGATCTGGACA 59.761 50.000 0.00 0.00 34.42 4.02
1325 2113 0.861866 CCGTACAGCGACGTGATCTG 60.862 60.000 0.00 0.00 44.77 2.90
1327 2115 0.029035 ATCCGTACAGCGACGTGATC 59.971 55.000 0.00 0.00 44.77 2.92
1328 2116 0.454600 AATCCGTACAGCGACGTGAT 59.545 50.000 0.00 7.28 44.77 3.06
1329 2117 0.241749 AAATCCGTACAGCGACGTGA 59.758 50.000 0.00 5.64 44.77 4.35
1502 2295 3.000819 ATCCGACGGCCAGGACAA 61.001 61.111 9.66 0.00 39.66 3.18
1596 2389 6.346359 CCTTGTAACTCTTTTGTACGTGTAGC 60.346 42.308 0.00 0.00 0.00 3.58
1597 2390 6.698766 ACCTTGTAACTCTTTTGTACGTGTAG 59.301 38.462 0.00 0.00 0.00 2.74
1598 2391 6.572519 ACCTTGTAACTCTTTTGTACGTGTA 58.427 36.000 0.00 0.00 0.00 2.90
1599 2392 5.422145 ACCTTGTAACTCTTTTGTACGTGT 58.578 37.500 0.00 0.00 0.00 4.49
1600 2393 5.978934 ACCTTGTAACTCTTTTGTACGTG 57.021 39.130 0.00 0.00 0.00 4.49
1601 2394 6.990341 AAACCTTGTAACTCTTTTGTACGT 57.010 33.333 0.00 0.00 0.00 3.57
1602 2395 8.389603 TGTAAAACCTTGTAACTCTTTTGTACG 58.610 33.333 0.00 0.00 0.00 3.67
1605 2398 9.634163 CTTTGTAAAACCTTGTAACTCTTTTGT 57.366 29.630 0.00 0.00 0.00 2.83
1606 2399 9.849166 TCTTTGTAAAACCTTGTAACTCTTTTG 57.151 29.630 0.00 0.00 0.00 2.44
1609 2402 8.683615 CCTTCTTTGTAAAACCTTGTAACTCTT 58.316 33.333 0.00 0.00 0.00 2.85
1610 2403 7.832685 ACCTTCTTTGTAAAACCTTGTAACTCT 59.167 33.333 0.00 0.00 0.00 3.24
1611 2404 7.993101 ACCTTCTTTGTAAAACCTTGTAACTC 58.007 34.615 0.00 0.00 0.00 3.01
1612 2405 7.949690 ACCTTCTTTGTAAAACCTTGTAACT 57.050 32.000 0.00 0.00 0.00 2.24
1615 2408 9.465199 AGTTAACCTTCTTTGTAAAACCTTGTA 57.535 29.630 0.88 0.00 0.00 2.41
1616 2409 8.357290 AGTTAACCTTCTTTGTAAAACCTTGT 57.643 30.769 0.88 0.00 0.00 3.16
1617 2410 9.083080 CAAGTTAACCTTCTTTGTAAAACCTTG 57.917 33.333 0.88 0.00 0.00 3.61
1618 2411 9.027202 TCAAGTTAACCTTCTTTGTAAAACCTT 57.973 29.630 0.88 0.00 0.00 3.50
1619 2412 8.584063 TCAAGTTAACCTTCTTTGTAAAACCT 57.416 30.769 0.88 0.00 0.00 3.50
1620 2413 9.811995 AATCAAGTTAACCTTCTTTGTAAAACC 57.188 29.630 0.88 0.00 0.00 3.27
1622 2415 9.810545 CCAATCAAGTTAACCTTCTTTGTAAAA 57.189 29.630 0.88 0.00 0.00 1.52
1623 2416 8.973182 ACCAATCAAGTTAACCTTCTTTGTAAA 58.027 29.630 0.88 0.00 0.00 2.01
1624 2417 8.528044 ACCAATCAAGTTAACCTTCTTTGTAA 57.472 30.769 0.88 0.00 0.00 2.41
1625 2418 7.776030 TGACCAATCAAGTTAACCTTCTTTGTA 59.224 33.333 0.88 0.00 0.00 2.41
1626 2419 6.605594 TGACCAATCAAGTTAACCTTCTTTGT 59.394 34.615 0.88 0.00 0.00 2.83
1627 2420 7.038154 TGACCAATCAAGTTAACCTTCTTTG 57.962 36.000 0.88 0.05 0.00 2.77
1628 2421 7.654022 TTGACCAATCAAGTTAACCTTCTTT 57.346 32.000 0.88 0.00 40.01 2.52
1642 2435 4.288366 TGTTCCTCACCTATTGACCAATCA 59.712 41.667 0.00 0.00 32.50 2.57
1643 2436 4.843728 TGTTCCTCACCTATTGACCAATC 58.156 43.478 0.00 0.00 32.50 2.67
1644 2437 4.927267 TGTTCCTCACCTATTGACCAAT 57.073 40.909 0.64 0.64 34.93 3.16
1645 2438 4.567537 CCATGTTCCTCACCTATTGACCAA 60.568 45.833 0.00 0.00 0.00 3.67
1646 2439 3.054434 CCATGTTCCTCACCTATTGACCA 60.054 47.826 0.00 0.00 0.00 4.02
1647 2440 3.545703 CCATGTTCCTCACCTATTGACC 58.454 50.000 0.00 0.00 0.00 4.02
1648 2441 2.945668 GCCATGTTCCTCACCTATTGAC 59.054 50.000 0.00 0.00 0.00 3.18
1649 2442 2.092429 GGCCATGTTCCTCACCTATTGA 60.092 50.000 0.00 0.00 0.00 2.57
1650 2443 2.301346 GGCCATGTTCCTCACCTATTG 58.699 52.381 0.00 0.00 0.00 1.90
1651 2444 1.215423 GGGCCATGTTCCTCACCTATT 59.785 52.381 4.39 0.00 0.00 1.73
1652 2445 0.846693 GGGCCATGTTCCTCACCTAT 59.153 55.000 4.39 0.00 0.00 2.57
1653 2446 0.548926 TGGGCCATGTTCCTCACCTA 60.549 55.000 0.00 0.00 0.00 3.08
1654 2447 1.852157 TGGGCCATGTTCCTCACCT 60.852 57.895 0.00 0.00 0.00 4.00
1655 2448 1.678970 GTGGGCCATGTTCCTCACC 60.679 63.158 10.70 0.00 0.00 4.02
1656 2449 1.678970 GGTGGGCCATGTTCCTCAC 60.679 63.158 10.70 0.00 34.09 3.51
1657 2450 2.763215 GGTGGGCCATGTTCCTCA 59.237 61.111 10.70 0.00 34.09 3.86
1658 2451 2.043953 GGGTGGGCCATGTTCCTC 60.044 66.667 10.70 0.00 36.17 3.71
1659 2452 3.672503 GGGGTGGGCCATGTTCCT 61.673 66.667 10.70 0.00 36.17 3.36
1660 2453 3.662117 GAGGGGTGGGCCATGTTCC 62.662 68.421 10.70 5.81 36.17 3.62
1661 2454 1.279025 TAGAGGGGTGGGCCATGTTC 61.279 60.000 10.70 5.83 36.17 3.18
1662 2455 0.849094 TTAGAGGGGTGGGCCATGTT 60.849 55.000 10.70 0.00 36.17 2.71
1663 2456 0.849094 TTTAGAGGGGTGGGCCATGT 60.849 55.000 10.70 0.00 36.17 3.21
1664 2457 0.334676 TTTTAGAGGGGTGGGCCATG 59.665 55.000 10.70 0.00 36.17 3.66
1665 2458 1.089123 TTTTTAGAGGGGTGGGCCAT 58.911 50.000 10.70 0.00 36.17 4.40
1666 2459 1.006639 GATTTTTAGAGGGGTGGGCCA 59.993 52.381 0.00 0.00 36.17 5.36
1667 2460 1.006639 TGATTTTTAGAGGGGTGGGCC 59.993 52.381 0.00 0.00 0.00 5.80
1668 2461 2.025321 TCTGATTTTTAGAGGGGTGGGC 60.025 50.000 0.00 0.00 0.00 5.36
1669 2462 3.891049 CTCTGATTTTTAGAGGGGTGGG 58.109 50.000 0.00 0.00 38.37 4.61
1709 2502 2.745968 TCCAATCATAAACTTGCCCCC 58.254 47.619 0.00 0.00 0.00 5.40
1710 2503 5.140454 AGTATCCAATCATAAACTTGCCCC 58.860 41.667 0.00 0.00 0.00 5.80
1711 2504 7.224297 TCTAGTATCCAATCATAAACTTGCCC 58.776 38.462 0.00 0.00 0.00 5.36
1712 2505 8.725148 CATCTAGTATCCAATCATAAACTTGCC 58.275 37.037 0.00 0.00 0.00 4.52
1713 2506 9.494271 TCATCTAGTATCCAATCATAAACTTGC 57.506 33.333 0.00 0.00 0.00 4.01
1721 2514 8.592809 GGTTCTCTTCATCTAGTATCCAATCAT 58.407 37.037 0.00 0.00 0.00 2.45
1722 2515 7.786943 AGGTTCTCTTCATCTAGTATCCAATCA 59.213 37.037 0.00 0.00 0.00 2.57
1723 2516 8.087750 CAGGTTCTCTTCATCTAGTATCCAATC 58.912 40.741 0.00 0.00 0.00 2.67
1724 2517 7.566879 ACAGGTTCTCTTCATCTAGTATCCAAT 59.433 37.037 0.00 0.00 0.00 3.16
1725 2518 6.897966 ACAGGTTCTCTTCATCTAGTATCCAA 59.102 38.462 0.00 0.00 0.00 3.53
1726 2519 6.436027 ACAGGTTCTCTTCATCTAGTATCCA 58.564 40.000 0.00 0.00 0.00 3.41
1727 2520 6.969993 ACAGGTTCTCTTCATCTAGTATCC 57.030 41.667 0.00 0.00 0.00 2.59
1731 2524 8.261522 GGATTTTACAGGTTCTCTTCATCTAGT 58.738 37.037 0.00 0.00 0.00 2.57
1732 2525 8.482128 AGGATTTTACAGGTTCTCTTCATCTAG 58.518 37.037 0.00 0.00 0.00 2.43
1733 2526 8.260818 CAGGATTTTACAGGTTCTCTTCATCTA 58.739 37.037 0.00 0.00 0.00 1.98
1734 2527 7.108847 CAGGATTTTACAGGTTCTCTTCATCT 58.891 38.462 0.00 0.00 0.00 2.90
1735 2528 6.881602 ACAGGATTTTACAGGTTCTCTTCATC 59.118 38.462 0.00 0.00 0.00 2.92
1736 2529 6.784031 ACAGGATTTTACAGGTTCTCTTCAT 58.216 36.000 0.00 0.00 0.00 2.57
1737 2530 6.187727 ACAGGATTTTACAGGTTCTCTTCA 57.812 37.500 0.00 0.00 0.00 3.02
1738 2531 8.794335 AATACAGGATTTTACAGGTTCTCTTC 57.206 34.615 0.00 0.00 0.00 2.87
1739 2532 8.606830 AGAATACAGGATTTTACAGGTTCTCTT 58.393 33.333 0.00 0.00 0.00 2.85
1740 2533 8.152023 AGAATACAGGATTTTACAGGTTCTCT 57.848 34.615 0.00 0.00 0.00 3.10
1741 2534 8.794335 AAGAATACAGGATTTTACAGGTTCTC 57.206 34.615 0.00 0.00 0.00 2.87
1742 2535 9.588096 AAAAGAATACAGGATTTTACAGGTTCT 57.412 29.630 0.00 0.00 0.00 3.01
1743 2536 9.626045 CAAAAGAATACAGGATTTTACAGGTTC 57.374 33.333 0.00 0.00 0.00 3.62
1744 2537 9.143155 ACAAAAGAATACAGGATTTTACAGGTT 57.857 29.630 0.00 0.00 0.00 3.50
1745 2538 8.706322 ACAAAAGAATACAGGATTTTACAGGT 57.294 30.769 0.00 0.00 0.00 4.00
1747 2540 9.755064 CGTACAAAAGAATACAGGATTTTACAG 57.245 33.333 0.00 0.00 0.00 2.74
1748 2541 9.275398 ACGTACAAAAGAATACAGGATTTTACA 57.725 29.630 0.00 0.00 0.00 2.41
1749 2542 9.750882 GACGTACAAAAGAATACAGGATTTTAC 57.249 33.333 0.00 0.00 0.00 2.01
1750 2543 9.715121 AGACGTACAAAAGAATACAGGATTTTA 57.285 29.630 0.00 0.00 0.00 1.52
1751 2544 8.617290 AGACGTACAAAAGAATACAGGATTTT 57.383 30.769 0.00 0.00 0.00 1.82
1752 2545 9.367444 CTAGACGTACAAAAGAATACAGGATTT 57.633 33.333 0.00 0.00 0.00 2.17
1753 2546 7.491696 GCTAGACGTACAAAAGAATACAGGATT 59.508 37.037 0.00 0.00 0.00 3.01
1754 2547 6.979238 GCTAGACGTACAAAAGAATACAGGAT 59.021 38.462 0.00 0.00 0.00 3.24
1755 2548 6.071784 TGCTAGACGTACAAAAGAATACAGGA 60.072 38.462 0.00 0.00 0.00 3.86
1756 2549 6.097356 TGCTAGACGTACAAAAGAATACAGG 58.903 40.000 0.00 0.00 0.00 4.00
1757 2550 7.757097 ATGCTAGACGTACAAAAGAATACAG 57.243 36.000 0.00 0.00 0.00 2.74
1758 2551 8.542497 AAATGCTAGACGTACAAAAGAATACA 57.458 30.769 0.00 0.00 0.00 2.29
1759 2552 9.821662 AAAAATGCTAGACGTACAAAAGAATAC 57.178 29.630 0.00 0.00 0.00 1.89
1760 2553 9.820229 CAAAAATGCTAGACGTACAAAAGAATA 57.180 29.630 0.00 0.00 0.00 1.75
1761 2554 7.807907 CCAAAAATGCTAGACGTACAAAAGAAT 59.192 33.333 0.00 0.00 0.00 2.40
1762 2555 7.136119 CCAAAAATGCTAGACGTACAAAAGAA 58.864 34.615 0.00 0.00 0.00 2.52
1763 2556 6.293735 CCCAAAAATGCTAGACGTACAAAAGA 60.294 38.462 0.00 0.00 0.00 2.52
1764 2557 5.856455 CCCAAAAATGCTAGACGTACAAAAG 59.144 40.000 0.00 0.00 0.00 2.27
1765 2558 5.764131 CCCAAAAATGCTAGACGTACAAAA 58.236 37.500 0.00 0.00 0.00 2.44
1766 2559 4.320641 GCCCAAAAATGCTAGACGTACAAA 60.321 41.667 0.00 0.00 0.00 2.83
1767 2560 3.189702 GCCCAAAAATGCTAGACGTACAA 59.810 43.478 0.00 0.00 0.00 2.41
1768 2561 2.745281 GCCCAAAAATGCTAGACGTACA 59.255 45.455 0.00 0.00 0.00 2.90
1769 2562 3.007635 AGCCCAAAAATGCTAGACGTAC 58.992 45.455 0.00 0.00 35.69 3.67
1770 2563 3.343941 AGCCCAAAAATGCTAGACGTA 57.656 42.857 0.00 0.00 35.69 3.57
1771 2564 2.200373 AGCCCAAAAATGCTAGACGT 57.800 45.000 0.00 0.00 35.69 4.34
1772 2565 3.485216 CGTAAGCCCAAAAATGCTAGACG 60.485 47.826 0.00 0.00 39.26 4.18
1773 2566 3.439129 ACGTAAGCCCAAAAATGCTAGAC 59.561 43.478 0.00 0.00 45.62 2.59
1774 2567 3.438781 CACGTAAGCCCAAAAATGCTAGA 59.561 43.478 0.00 0.00 45.62 2.43
1775 2568 3.758300 CACGTAAGCCCAAAAATGCTAG 58.242 45.455 0.00 0.00 45.62 3.42
1776 2569 2.094957 GCACGTAAGCCCAAAAATGCTA 60.095 45.455 0.00 0.00 45.62 3.49
1777 2570 1.336795 GCACGTAAGCCCAAAAATGCT 60.337 47.619 0.00 0.00 45.62 3.79
1778 2571 1.067693 GCACGTAAGCCCAAAAATGC 58.932 50.000 0.00 0.00 45.62 3.56
1779 2572 2.030363 TCTGCACGTAAGCCCAAAAATG 60.030 45.455 0.00 0.00 45.62 2.32
1780 2573 2.235016 TCTGCACGTAAGCCCAAAAAT 58.765 42.857 0.00 0.00 45.62 1.82
1781 2574 1.681538 TCTGCACGTAAGCCCAAAAA 58.318 45.000 0.00 0.00 45.62 1.94
1782 2575 1.681538 TTCTGCACGTAAGCCCAAAA 58.318 45.000 0.00 0.00 45.62 2.44
1783 2576 1.335496 GTTTCTGCACGTAAGCCCAAA 59.665 47.619 0.00 0.00 45.62 3.28
1784 2577 0.948678 GTTTCTGCACGTAAGCCCAA 59.051 50.000 0.00 0.00 45.62 4.12
1785 2578 0.887387 GGTTTCTGCACGTAAGCCCA 60.887 55.000 0.00 0.00 45.62 5.36
1786 2579 0.887387 TGGTTTCTGCACGTAAGCCC 60.887 55.000 0.00 0.00 45.62 5.19
1787 2580 1.165270 ATGGTTTCTGCACGTAAGCC 58.835 50.000 0.00 0.00 45.62 4.35
1788 2581 2.989422 AATGGTTTCTGCACGTAAGC 57.011 45.000 0.00 0.00 45.62 3.09
1790 2583 3.403968 TGCTAATGGTTTCTGCACGTAA 58.596 40.909 0.00 0.00 0.00 3.18
1795 2588 5.336690 GGAGAAAATGCTAATGGTTTCTGCA 60.337 40.000 10.44 0.00 43.72 4.41
1799 2592 6.691508 AGTTGGAGAAAATGCTAATGGTTTC 58.308 36.000 0.00 0.00 0.00 2.78
1824 2617 3.852578 AGGAATGGGATTTCTGTACTGGT 59.147 43.478 0.00 0.00 0.00 4.00
1829 2622 5.221106 CGTACGTAGGAATGGGATTTCTGTA 60.221 44.000 9.66 0.00 29.03 2.74
1833 2626 2.798847 GCGTACGTAGGAATGGGATTTC 59.201 50.000 18.91 0.00 0.00 2.17
1834 2627 2.484241 GGCGTACGTAGGAATGGGATTT 60.484 50.000 18.91 0.00 0.00 2.17
1835 2628 1.069668 GGCGTACGTAGGAATGGGATT 59.930 52.381 18.91 0.00 0.00 3.01
1836 2629 0.677842 GGCGTACGTAGGAATGGGAT 59.322 55.000 18.91 0.00 0.00 3.85
1837 2630 0.396139 AGGCGTACGTAGGAATGGGA 60.396 55.000 18.91 0.00 0.00 4.37
1838 2631 0.462789 AAGGCGTACGTAGGAATGGG 59.537 55.000 18.91 0.00 0.00 4.00
1839 2632 1.407979 AGAAGGCGTACGTAGGAATGG 59.592 52.381 18.91 0.00 0.00 3.16
1840 2633 2.865343 AGAAGGCGTACGTAGGAATG 57.135 50.000 18.91 0.00 0.00 2.67
1841 2634 3.282021 TGTAGAAGGCGTACGTAGGAAT 58.718 45.455 18.91 3.36 0.00 3.01
1842 2635 2.679837 CTGTAGAAGGCGTACGTAGGAA 59.320 50.000 18.91 0.00 0.00 3.36
1843 2636 2.093500 TCTGTAGAAGGCGTACGTAGGA 60.093 50.000 18.91 0.12 0.00 2.94
1844 2637 2.283298 TCTGTAGAAGGCGTACGTAGG 58.717 52.381 17.90 10.86 0.00 3.18
1845 2638 3.937874 CTTCTGTAGAAGGCGTACGTAG 58.062 50.000 17.90 3.39 45.79 3.51
1847 2640 2.915738 CTTCTGTAGAAGGCGTACGT 57.084 50.000 17.90 0.00 45.79 3.57
1855 2648 6.860080 TGGATACGTAAACCTTCTGTAGAAG 58.140 40.000 18.39 13.43 45.42 2.85
1856 2649 6.839124 TGGATACGTAAACCTTCTGTAGAA 57.161 37.500 18.39 0.00 42.51 2.10
1857 2650 8.523915 TTATGGATACGTAAACCTTCTGTAGA 57.476 34.615 18.39 2.03 44.90 2.59
1858 2651 8.627403 TCTTATGGATACGTAAACCTTCTGTAG 58.373 37.037 18.39 10.56 46.98 2.74
1859 2652 8.523915 TCTTATGGATACGTAAACCTTCTGTA 57.476 34.615 18.39 3.14 46.98 2.74
1860 2653 7.414222 TCTTATGGATACGTAAACCTTCTGT 57.586 36.000 18.39 6.72 46.98 3.41
1861 2654 8.765219 CAATCTTATGGATACGTAAACCTTCTG 58.235 37.037 18.39 10.99 46.98 3.02
1862 2655 8.701895 TCAATCTTATGGATACGTAAACCTTCT 58.298 33.333 18.39 9.27 46.98 2.85
1863 2656 8.882415 TCAATCTTATGGATACGTAAACCTTC 57.118 34.615 18.39 4.56 46.98 3.46
1864 2657 7.931948 CCTCAATCTTATGGATACGTAAACCTT 59.068 37.037 18.39 15.37 46.98 3.50
1865 2658 7.070821 ACCTCAATCTTATGGATACGTAAACCT 59.929 37.037 18.39 9.83 46.98 3.50
1866 2659 7.215085 ACCTCAATCTTATGGATACGTAAACC 58.785 38.462 13.11 13.11 46.98 3.27
1867 2660 9.189723 GTACCTCAATCTTATGGATACGTAAAC 57.810 37.037 0.00 0.00 46.98 2.01
1868 2661 9.139734 AGTACCTCAATCTTATGGATACGTAAA 57.860 33.333 0.00 0.00 46.98 2.01
1869 2662 8.701908 AGTACCTCAATCTTATGGATACGTAA 57.298 34.615 0.00 0.00 45.66 3.18
1870 2663 8.701908 AAGTACCTCAATCTTATGGATACGTA 57.298 34.615 0.00 0.00 42.51 3.57
1871 2664 7.287005 TGAAGTACCTCAATCTTATGGATACGT 59.713 37.037 0.00 0.00 42.51 3.57
1872 2665 7.658261 TGAAGTACCTCAATCTTATGGATACG 58.342 38.462 0.00 0.00 42.51 3.06
1893 2686 4.083802 CCACGCTAAAAGGAAAGTCTGAAG 60.084 45.833 0.00 0.00 0.00 3.02
1961 2755 3.243941 ACTGTACGTGTACTGAAATGCCA 60.244 43.478 19.69 0.00 38.07 4.92
1963 2757 4.210537 ACAACTGTACGTGTACTGAAATGC 59.789 41.667 19.69 0.00 38.07 3.56
1964 2758 5.900339 ACAACTGTACGTGTACTGAAATG 57.100 39.130 19.69 16.43 38.07 2.32
1967 2762 5.170021 ACAAACAACTGTACGTGTACTGAA 58.830 37.500 19.69 0.00 38.07 3.02
1979 2774 7.646130 CGTGGTATTAATTCAACAAACAACTGT 59.354 33.333 0.00 0.00 0.00 3.55
2457 6536 0.887836 TCACAGAAGCAGCAGCAAGG 60.888 55.000 3.17 0.00 45.49 3.61
2462 6541 0.803117 CACCATCACAGAAGCAGCAG 59.197 55.000 0.00 0.00 0.00 4.24
2629 6724 4.229096 CTCACAAATGAAAATGGTGACCG 58.771 43.478 0.00 0.00 34.97 4.79
2657 6752 7.358848 GCATACAATTGGTAAAAAGGAAACACG 60.359 37.037 10.83 0.00 35.14 4.49
2678 6852 7.438459 ACATAGGAAAAAGAGACATACGCATAC 59.562 37.037 0.00 0.00 0.00 2.39
2710 6927 5.659440 TGCCATGTTTCCTTTTTCCTATC 57.341 39.130 0.00 0.00 0.00 2.08
2722 7003 5.697633 ACAGTTTGATTTGATGCCATGTTTC 59.302 36.000 0.00 0.00 0.00 2.78
2741 7022 5.940192 TTGCATACGATTTTCTGACAGTT 57.060 34.783 1.59 0.00 0.00 3.16
2889 7189 0.455410 GGCGCAATTGGTTATCTGCA 59.545 50.000 10.83 0.00 34.39 4.41
2898 7198 0.318614 AAACTCGTTGGCGCAATTGG 60.319 50.000 10.83 0.00 38.14 3.16
2908 7208 3.667960 GCTGCCTAACATCAAACTCGTTG 60.668 47.826 0.00 0.00 38.71 4.10
3030 7641 6.384258 AGCATGTACTACTATCTGTCAGTG 57.616 41.667 0.00 0.00 0.00 3.66
3034 7645 6.183360 TGGTCAAGCATGTACTACTATCTGTC 60.183 42.308 0.00 0.00 0.00 3.51
3051 7662 3.861689 GCTGCTAAAATCAATGGTCAAGC 59.138 43.478 0.00 0.00 0.00 4.01
3061 7672 0.813184 GCTGGCTGCTGCTAAAATCA 59.187 50.000 15.64 2.86 39.59 2.57
3127 7741 0.535102 ACCAGCGGTTCCTGTTCAAG 60.535 55.000 0.00 0.00 27.29 3.02
3225 7839 0.255318 CATCCCTTGAGGCTTGCTCT 59.745 55.000 0.00 0.00 34.51 4.09
3437 8093 1.976474 GAACAGATTTGCGGGCCCA 60.976 57.895 24.92 1.02 0.00 5.36
3491 8147 2.348411 ACACTAGCTTGGTGCAAGTT 57.652 45.000 16.17 0.00 42.77 2.66
3558 8352 3.120060 GCGTCACTTTCTGCATCAAGATT 60.120 43.478 11.10 0.00 0.00 2.40
3697 8491 2.573463 ACCCCACCTTGGTATCTCAAT 58.427 47.619 0.00 0.00 35.17 2.57
3729 8523 3.591527 TGAGAAGGGTGATAATGGTTGGT 59.408 43.478 0.00 0.00 0.00 3.67
3926 8732 1.398390 GGTCGCCTTTGTTCTATGCAG 59.602 52.381 0.00 0.00 0.00 4.41
4314 9122 3.119990 CCGGACAACATTACACCATGAAC 60.120 47.826 0.00 0.00 0.00 3.18
4399 9212 1.211969 GCTTCACAGCACATGCCTG 59.788 57.895 11.29 11.29 46.49 4.85
4513 9326 4.823989 AGACTGAATGAACAAACTCCCTTG 59.176 41.667 0.00 0.00 0.00 3.61
4575 9388 1.972872 CAAAGTTGAGGCACCAGACT 58.027 50.000 0.00 0.00 33.94 3.24
4617 9430 8.721133 ATAGTATTTCAGGTGGGAAAGTTTTT 57.279 30.769 0.00 0.00 39.88 1.94
4618 9431 9.816787 TTATAGTATTTCAGGTGGGAAAGTTTT 57.183 29.630 0.00 0.00 39.88 2.43
4619 9432 9.462606 CTTATAGTATTTCAGGTGGGAAAGTTT 57.537 33.333 0.00 0.00 39.88 2.66
4620 9433 8.053355 CCTTATAGTATTTCAGGTGGGAAAGTT 58.947 37.037 0.00 0.00 39.88 2.66
4621 9434 7.404980 TCCTTATAGTATTTCAGGTGGGAAAGT 59.595 37.037 0.00 0.00 39.88 2.66
4622 9435 7.802117 TCCTTATAGTATTTCAGGTGGGAAAG 58.198 38.462 0.00 0.00 39.88 2.62
4623 9436 7.758820 TCCTTATAGTATTTCAGGTGGGAAA 57.241 36.000 0.00 0.00 40.72 3.13
4624 9437 7.570982 TCATCCTTATAGTATTTCAGGTGGGAA 59.429 37.037 0.00 0.00 0.00 3.97
4625 9438 7.079700 TCATCCTTATAGTATTTCAGGTGGGA 58.920 38.462 0.00 0.00 0.00 4.37
4693 9517 8.207545 ACTTTCCCAAATGTTTATTGCACTTAA 58.792 29.630 0.00 0.00 0.00 1.85
4739 9563 4.631813 GTGCCATACTAACTCTGTTTCCAG 59.368 45.833 0.00 0.00 40.25 3.86
4776 9600 4.082354 GCTGATTTCTCTGGAAGCAACAAT 60.082 41.667 0.00 0.00 32.61 2.71
4904 9728 0.595095 GGTCTTCTTGTTGCCAGCAG 59.405 55.000 0.00 0.00 0.00 4.24
4909 9734 0.312102 GTGCTGGTCTTCTTGTTGCC 59.688 55.000 0.00 0.00 0.00 4.52
4910 9735 0.040958 CGTGCTGGTCTTCTTGTTGC 60.041 55.000 0.00 0.00 0.00 4.17
4911 9736 1.261619 GACGTGCTGGTCTTCTTGTTG 59.738 52.381 0.00 0.00 34.09 3.33
4915 9740 0.753262 AGTGACGTGCTGGTCTTCTT 59.247 50.000 0.00 0.00 37.81 2.52
4917 9742 0.032130 TGAGTGACGTGCTGGTCTTC 59.968 55.000 0.00 7.27 37.81 2.87
4921 9746 0.107897 TTGTTGAGTGACGTGCTGGT 60.108 50.000 0.00 0.00 0.00 4.00
4956 9782 1.893062 CTGCTGGTCGGAGATGTGA 59.107 57.895 0.00 0.00 40.67 3.58
4957 9783 1.812922 GCTGCTGGTCGGAGATGTG 60.813 63.158 0.00 0.00 40.67 3.21
4976 9802 0.464036 TATGGACTGCTTCGGCGATT 59.536 50.000 11.76 0.00 45.37 3.34
4979 9805 0.460284 AGTTATGGACTGCTTCGGCG 60.460 55.000 0.00 0.00 45.37 6.46
4985 9811 2.094494 CGAGTGTGAGTTATGGACTGCT 60.094 50.000 0.00 0.00 39.19 4.24
4988 9814 1.893137 TGCGAGTGTGAGTTATGGACT 59.107 47.619 0.00 0.00 42.70 3.85
4989 9815 2.363788 TGCGAGTGTGAGTTATGGAC 57.636 50.000 0.00 0.00 0.00 4.02
4996 9825 0.532862 CAACCCTTGCGAGTGTGAGT 60.533 55.000 0.00 0.00 0.00 3.41
5016 9845 2.202932 GCCCGTGCGATCACTGAT 60.203 61.111 0.00 0.00 40.99 2.90
5186 10015 2.358615 GCGACATGTGGGACAGCA 60.359 61.111 1.15 0.00 41.80 4.41
5232 10061 1.077716 GGGGAACGCAGGCAAGTAT 60.078 57.895 0.00 0.00 42.57 2.12
5253 10082 1.654220 GCACTTCTTTCGGCTGCAA 59.346 52.632 0.50 0.00 0.00 4.08



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.