AutoCloner

Multiple sequence alignment - TraesCS7D01G389000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G389000	chr7D	100.000	3308	0	0	1	3308	504248649	504251956	0.000000e+00	6109.0
1	TraesCS7D01G389000	chr7D	90.262	688	44	14	1	676	532629562	532628886	0.000000e+00	878.0
2	TraesCS7D01G389000	chr7D	90.000	690	45	17	1	676	135439003	135438324	0.000000e+00	870.0
3	TraesCS7D01G389000	chr7D	79.062	320	66	1	2972	3290	504544874	504545193	5.560000e-53	219.0
4	TraesCS7D01G389000	chr7D	87.097	124	11	3	634	754	76523793	76523672	5.760000e-28	135.0
5	TraesCS7D01G389000	chr7B	94.165	2468	103	25	854	3308	532287361	532289800	0.000000e+00	3722.0
6	TraesCS7D01G389000	chr7B	78.806	335	66	5	2977	3308	532468407	532468739	1.550000e-53	220.0
7	TraesCS7D01G389000	chr7B	91.579	95	8	0	751	845	577139918	577140012	7.450000e-27	132.0
8	TraesCS7D01G389000	chr7A	93.698	2412	118	19	904	3308	571934950	571937334	0.000000e+00	3581.0
9	TraesCS7D01G389000	chr5D	94.842	601	30	1	1	601	380088438	380087839	0.000000e+00	937.0
10	TraesCS7D01G389000	chr5D	95.070	568	27	1	1	568	305779127	305778561	0.000000e+00	893.0
11	TraesCS7D01G389000	chr5D	90.722	97	6	2	751	847	380087339	380087246	3.470000e-25	126.0
12	TraesCS7D01G389000	chr5D	92.453	53	4	0	588	640	157690515	157690567	3.540000e-10	76.8
13	TraesCS7D01G389000	chr2D	94.912	570	28	1	1	570	539155218	539155786	0.000000e+00	891.0
14	TraesCS7D01G389000	chr2D	94.336	565	31	1	1	565	176587394	176586831	0.000000e+00	865.0
15	TraesCS7D01G389000	chr2D	94.444	54	3	0	587	640	102729235	102729288	2.120000e-12	84.2
16	TraesCS7D01G389000	chr2D	95.918	49	2	0	592	640	543713376	543713328	2.740000e-11	80.5
17	TraesCS7D01G389000	chr6D	90.525	686	42	14	1	676	441785047	441785719	0.000000e+00	885.0
18	TraesCS7D01G389000	chr6D	94.737	95	5	0	751	845	16177784	16177690	7.400000e-32	148.0
19	TraesCS7D01G389000	chr6D	92.632	95	7	0	751	845	47078654	47078560	1.600000e-28	137.0
20	TraesCS7D01G389000	chr3D	94.681	564	30	0	2	565	147838214	147837651	0.000000e+00	876.0
21	TraesCS7D01G389000	chr3D	93.684	95	6	0	751	845	20143598	20143692	3.440000e-30	143.0
22	TraesCS7D01G389000	chr4D	94.014	568	34	0	1	568	12300678	12301245	0.000000e+00	861.0
23	TraesCS7D01G389000	chr4D	94.737	95	5	0	751	845	12301388	12301482	7.400000e-32	148.0
24	TraesCS7D01G389000	chr4D	90.526	95	9	0	751	845	131038072	131038166	3.470000e-25	126.0
25	TraesCS7D01G389000	chr4A	91.753	97	8	0	749	845	259779049	259779145	5.760000e-28	135.0
26	TraesCS7D01G389000	chr2A	90.909	99	9	0	749	847	715797823	715797725	2.070000e-27	134.0
27	TraesCS7D01G389000	chr1D	85.217	115	8	5	638	751	359788669	359788775	3.490000e-20	110.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G389000	chr7D	504248649	504251956	3307	False	6109.0	6109	100.0000	1	3308	1	chr7D.!!$F1	3307
1	TraesCS7D01G389000	chr7D	532628886	532629562	676	True	878.0	878	90.2620	1	676	1	chr7D.!!$R3	675
2	TraesCS7D01G389000	chr7D	135438324	135439003	679	True	870.0	870	90.0000	1	676	1	chr7D.!!$R2	675
3	TraesCS7D01G389000	chr7B	532287361	532289800	2439	False	3722.0	3722	94.1650	854	3308	1	chr7B.!!$F1	2454
4	TraesCS7D01G389000	chr7A	571934950	571937334	2384	False	3581.0	3581	93.6980	904	3308	1	chr7A.!!$F1	2404
5	TraesCS7D01G389000	chr5D	305778561	305779127	566	True	893.0	893	95.0700	1	568	1	chr5D.!!$R1	567
6	TraesCS7D01G389000	chr5D	380087246	380088438	1192	True	531.5	937	92.7820	1	847	2	chr5D.!!$R2	846
7	TraesCS7D01G389000	chr2D	539155218	539155786	568	False	891.0	891	94.9120	1	570	1	chr2D.!!$F2	569
8	TraesCS7D01G389000	chr2D	176586831	176587394	563	True	865.0	865	94.3360	1	565	1	chr2D.!!$R1	564
9	TraesCS7D01G389000	chr6D	441785047	441785719	672	False	885.0	885	90.5250	1	676	1	chr6D.!!$F1	675
10	TraesCS7D01G389000	chr3D	147837651	147838214	563	True	876.0	876	94.6810	2	565	1	chr3D.!!$R1	563
11	TraesCS7D01G389000	chr4D	12300678	12301482	804	False	504.5	861	94.3755	1	845	2	chr4D.!!$F2	844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
996	1401	0.475906	CCTGCCTGATTTCCCTAGGG	59.524	60.0	23.22	23.22	32.15	3.53	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2660	3081	0.178992	CCTCAACTTTGCCCACCTGA	60.179	55.0	0.0	0.0	0.0	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
295	296	1.274703	ATGGACGAGGAAGCCATGGT	61.275	55.000	14.67	0.00	40.72	3.55
314	315	2.555547	GCTGTGGAGGCAACGCTTT	61.556	57.895	0.00	0.00	46.39	3.51
334	335	8.073355	CGCTTTCCGTAAGATATCATTAAAGT	57.927	34.615	5.32	0.00	43.02	2.66
374	375	2.364448	AGGGCGGAGAGGAAGGAC	60.364	66.667	0.00	0.00	0.00	3.85
640	1014	4.938080	AGAAGACTATGTGCCGAACTATG	58.062	43.478	0.00	0.00	0.00	2.23
647	1021	6.678878	ACTATGTGCCGAACTATGTACTATG	58.321	40.000	0.00	0.00	0.00	2.23
676	1050	9.263538	CTGTAGAGAAGACTACGAACTATGTAT	57.736	37.037	0.00	0.00	43.72	2.29
697	1071	9.797642	ATGTATGCATTTTGTATCATAGAAGGA	57.202	29.630	3.54	0.00	29.54	3.36
698	1072	9.276590	TGTATGCATTTTGTATCATAGAAGGAG	57.723	33.333	3.54	0.00	0.00	3.69
848	1253	2.093235	GGCTGTTGGAGATGCTCTAACT	60.093	50.000	19.61	0.00	46.98	2.24
849	1254	2.935201	GCTGTTGGAGATGCTCTAACTG	59.065	50.000	19.61	19.29	46.98	3.16
850	1255	3.529533	CTGTTGGAGATGCTCTAACTGG	58.470	50.000	19.61	11.52	46.98	4.00
851	1256	2.284190	GTTGGAGATGCTCTAACTGGC	58.716	52.381	14.07	0.00	44.69	4.85
852	1257	1.871418	TGGAGATGCTCTAACTGGCT	58.129	50.000	0.00	0.00	0.00	4.75
859	1264	4.956700	AGATGCTCTAACTGGCTACTACAA	59.043	41.667	0.00	0.00	0.00	2.41
872	1277	5.817296	TGGCTACTACAAACTGATATGCAAG	59.183	40.000	0.00	0.00	0.00	4.01
877	1282	3.434309	ACAAACTGATATGCAAGCCCTT	58.566	40.909	0.00	0.00	0.00	3.95
922	1327	3.551551	GTTTCCGTTGGAATTCAGAACG	58.448	45.455	24.45	24.45	41.71	3.95
929	1334	4.279659	GTTGGAATTCAGAACGACAACAC	58.720	43.478	7.93	0.00	37.32	3.32
971	1376	4.164843	TGCTATGGTTAATTCCCCTGTC	57.835	45.455	0.00	0.00	0.00	3.51
996	1401	0.475906	CCTGCCTGATTTCCCTAGGG	59.524	60.000	23.22	23.22	32.15	3.53
997	1402	1.511613	CTGCCTGATTTCCCTAGGGA	58.488	55.000	27.73	27.73	43.52	4.20
1236	1641	1.093159	CCACCAAGCTGCTGATCTTC	58.907	55.000	1.35	0.00	0.00	2.87
1239	1644	2.935201	CACCAAGCTGCTGATCTTCTAC	59.065	50.000	1.35	0.00	0.00	2.59
1371	1776	1.675641	GCAGGCGGTGGAGATGTTT	60.676	57.895	0.00	0.00	0.00	2.83
1374	1779	1.303317	GGCGGTGGAGATGTTTGGT	60.303	57.895	0.00	0.00	0.00	3.67
1728	2133	2.804090	GACGTGACGTTCCTCGCC	60.804	66.667	13.44	0.00	41.37	5.54
1749	2154	4.827087	CTCTCGGCCTGTGCGCAT	62.827	66.667	15.91	0.00	38.85	4.73
2010	2415	1.654220	GCACTTCTTTCGGCTGCAA	59.346	52.632	0.50	0.00	0.00	4.08
2031	2436	1.077716	GGGGAACGCAGGCAAGTAT	60.078	57.895	0.00	0.00	42.57	2.12
2077	2482	2.358615	GCGACATGTGGGACAGCA	60.359	61.111	1.15	0.00	41.80	4.41
2247	2652	2.202932	GCCCGTGCGATCACTGAT	60.203	61.111	0.00	0.00	40.99	2.90
2267	2672	0.532862	CAACCCTTGCGAGTGTGAGT	60.533	55.000	0.00	0.00	0.00	3.41
2273	2678	2.353704	CCTTGCGAGTGTGAGTTATGGA	60.354	50.000	0.00	0.00	0.00	3.41
2274	2679	2.363788	TGCGAGTGTGAGTTATGGAC	57.636	50.000	0.00	0.00	0.00	4.02
2275	2680	1.893137	TGCGAGTGTGAGTTATGGACT	59.107	47.619	0.00	0.00	42.70	3.85
2276	2681	2.263077	GCGAGTGTGAGTTATGGACTG	58.737	52.381	0.00	0.00	39.19	3.51
2277	2682	2.263077	CGAGTGTGAGTTATGGACTGC	58.737	52.381	0.00	0.00	39.19	4.40
2278	2683	2.094494	CGAGTGTGAGTTATGGACTGCT	60.094	50.000	0.00	0.00	39.19	4.24
2284	2692	0.460284	AGTTATGGACTGCTTCGGCG	60.460	55.000	0.00	0.00	45.37	6.46
2287	2695	0.464036	TATGGACTGCTTCGGCGATT	59.536	50.000	11.76	0.00	45.37	3.34
2306	2714	1.812922	GCTGCTGGTCGGAGATGTG	60.813	63.158	0.00	0.00	40.67	3.21
2307	2715	1.893062	CTGCTGGTCGGAGATGTGA	59.107	57.895	0.00	0.00	40.67	3.58
2342	2751	0.107897	TTGTTGAGTGACGTGCTGGT	60.108	50.000	0.00	0.00	0.00	4.00
2346	2755	0.032130	TGAGTGACGTGCTGGTCTTC	59.968	55.000	0.00	7.27	37.81	2.87
2348	2757	0.753262	AGTGACGTGCTGGTCTTCTT	59.247	50.000	0.00	0.00	37.81	2.52
2352	2761	1.261619	GACGTGCTGGTCTTCTTGTTG	59.738	52.381	0.00	0.00	34.09	3.33
2353	2762	0.040958	CGTGCTGGTCTTCTTGTTGC	60.041	55.000	0.00	0.00	0.00	4.17
2359	2769	0.595095	GGTCTTCTTGTTGCCAGCAG	59.405	55.000	0.00	0.00	0.00	4.24
2487	2897	4.082354	GCTGATTTCTCTGGAAGCAACAAT	60.082	41.667	0.00	0.00	32.61	2.71
2524	2934	4.631813	GTGCCATACTAACTCTGTTTCCAG	59.368	45.833	0.00	0.00	40.25	3.86
2638	3059	7.079700	TCATCCTTATAGTATTTCAGGTGGGA	58.920	38.462	0.00	0.00	0.00	4.37
2639	3060	7.570982	TCATCCTTATAGTATTTCAGGTGGGAA	59.429	37.037	0.00	0.00	0.00	3.97
2640	3061	7.758820	TCCTTATAGTATTTCAGGTGGGAAA	57.241	36.000	0.00	0.00	40.72	3.13
2641	3062	7.802117	TCCTTATAGTATTTCAGGTGGGAAAG	58.198	38.462	0.00	0.00	39.88	2.62
2642	3063	7.404980	TCCTTATAGTATTTCAGGTGGGAAAGT	59.595	37.037	0.00	0.00	39.88	2.66
2643	3064	8.053355	CCTTATAGTATTTCAGGTGGGAAAGTT	58.947	37.037	0.00	0.00	39.88	2.66
2644	3065	9.462606	CTTATAGTATTTCAGGTGGGAAAGTTT	57.537	33.333	0.00	0.00	39.88	2.66
2645	3066	9.816787	TTATAGTATTTCAGGTGGGAAAGTTTT	57.183	29.630	0.00	0.00	39.88	2.43
2646	3067	8.721133	ATAGTATTTCAGGTGGGAAAGTTTTT	57.279	30.769	0.00	0.00	39.88	1.94
2688	3109	1.972872	CAAAGTTGAGGCACCAGACT	58.027	50.000	0.00	0.00	33.94	3.24
2750	3171	4.823989	AGACTGAATGAACAAACTCCCTTG	59.176	41.667	0.00	0.00	0.00	3.61
2864	3285	1.211969	GCTTCACAGCACATGCCTG	59.788	57.895	11.29	11.29	46.49	4.85
2949	3375	3.119990	CCGGACAACATTACACCATGAAC	60.120	47.826	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
295	296	3.772853	AAGCGTTGCCTCCACAGCA	62.773	57.895	0.00	0.00	38.81	4.41
314	315	8.479689	TGTTCCACTTTAATGATATCTTACGGA	58.520	33.333	3.98	0.00	0.00	4.69
329	330	3.135994	GGCGAAGAACTGTTCCACTTTA	58.864	45.455	16.48	0.00	0.00	1.85
332	333	0.600255	CGGCGAAGAACTGTTCCACT	60.600	55.000	16.48	2.23	0.00	4.00
334	335	0.319555	CTCGGCGAAGAACTGTTCCA	60.320	55.000	16.48	0.00	0.00	3.53
374	375	2.498726	GCTCGCTCCTTCCTCCTG	59.501	66.667	0.00	0.00	0.00	3.86
488	490	2.886124	GGAGCGTAGGCGTCAAGC	60.886	66.667	1.05	0.00	46.35	4.01
588	639	9.037737	ACGATACAAAATGCGTACATAGTTAAT	57.962	29.630	0.00	0.00	34.62	1.40
589	640	8.410030	ACGATACAAAATGCGTACATAGTTAA	57.590	30.769	0.00	0.00	34.62	2.01
592	643	7.420002	TCTACGATACAAAATGCGTACATAGT	58.580	34.615	0.00	0.00	38.09	2.12
593	644	7.847166	TCTACGATACAAAATGCGTACATAG	57.153	36.000	0.00	0.00	38.09	2.23
594	645	8.130469	TCTTCTACGATACAAAATGCGTACATA	58.870	33.333	0.00	0.00	38.09	2.29
595	646	6.976349	TCTTCTACGATACAAAATGCGTACAT	59.024	34.615	0.00	0.00	38.09	2.29
596	647	6.324042	TCTTCTACGATACAAAATGCGTACA	58.676	36.000	0.00	0.00	38.09	2.90
640	1014	8.967218	CGTAGTCTTCTCTACAGTACATAGTAC	58.033	40.741	0.00	0.00	39.92	2.73
647	1021	6.966435	AGTTCGTAGTCTTCTCTACAGTAC	57.034	41.667	0.00	0.00	39.92	2.73
659	1033	7.764443	ACAAAATGCATACATAGTTCGTAGTCT	59.236	33.333	0.00	0.00	34.62	3.24
676	1050	5.532406	GCCTCCTTCTATGATACAAAATGCA	59.468	40.000	0.00	0.00	0.00	3.96
708	1082	7.042725	TTTCTTGTGAAGAACAGTGATAGTTCG	60.043	37.037	0.00	0.00	46.53	3.95
740	1114	3.070018	GTGCGCTGGCTCTATATTTCAT	58.930	45.455	9.73	0.00	40.82	2.57
741	1115	2.483876	GTGCGCTGGCTCTATATTTCA	58.516	47.619	9.73	0.00	40.82	2.69
742	1116	1.801178	GGTGCGCTGGCTCTATATTTC	59.199	52.381	9.73	0.00	40.82	2.17
744	1118	0.319900	CGGTGCGCTGGCTCTATATT	60.320	55.000	9.73	0.00	40.82	1.28
745	1119	1.290324	CGGTGCGCTGGCTCTATAT	59.710	57.895	9.73	0.00	40.82	0.86
746	1120	2.728180	CGGTGCGCTGGCTCTATA	59.272	61.111	9.73	0.00	40.82	1.31
824	1229	2.747460	GCATCTCCAACAGCCGCA	60.747	61.111	0.00	0.00	0.00	5.69
847	1252	5.359756	TGCATATCAGTTTGTAGTAGCCAG	58.640	41.667	0.00	0.00	0.00	4.85
848	1253	5.351948	TGCATATCAGTTTGTAGTAGCCA	57.648	39.130	0.00	0.00	0.00	4.75
849	1254	5.277538	GCTTGCATATCAGTTTGTAGTAGCC	60.278	44.000	0.00	0.00	0.00	3.93
850	1255	5.277538	GGCTTGCATATCAGTTTGTAGTAGC	60.278	44.000	0.00	0.00	0.00	3.58
851	1256	5.237344	GGGCTTGCATATCAGTTTGTAGTAG	59.763	44.000	0.00	0.00	0.00	2.57
852	1257	5.104527	AGGGCTTGCATATCAGTTTGTAGTA	60.105	40.000	0.00	0.00	0.00	1.82
859	1264	3.091633	ACAAGGGCTTGCATATCAGTT	57.908	42.857	0.00	0.00	44.03	3.16
872	1277	6.202762	CCTGTTTCAAAGATAAAAACAAGGGC	59.797	38.462	0.00	0.00	41.04	5.19
877	1282	8.073467	ACCTTCCTGTTTCAAAGATAAAAACA	57.927	30.769	0.00	0.00	39.77	2.83
940	1345	8.135529	GGGAATTAACCATAGCATGTTTTAGTC	58.864	37.037	0.00	0.00	0.00	2.59
971	1376	0.394899	GGAAATCAGGCAGGGTCAGG	60.395	60.000	0.00	0.00	0.00	3.86
996	1401	0.386113	GGCTACTCGAGTCCATGGTC	59.614	60.000	23.89	6.20	0.00	4.02
997	1402	0.033011	AGGCTACTCGAGTCCATGGT	60.033	55.000	23.89	0.00	0.00	3.55
1236	1641	1.283181	CTCCCCGATCTTCGCGTAG	59.717	63.158	5.77	6.11	38.82	3.51
1239	1644	3.832720	GAGCTCCCCGATCTTCGCG	62.833	68.421	0.87	0.00	38.82	5.87
1401	1806	1.947146	CGCGAACGTGAACTGGTCA	60.947	57.895	0.00	0.00	33.53	4.02
1535	1940	1.337728	TGCACTTGAGGTACATGTCGG	60.338	52.381	0.00	0.00	35.22	4.79
1677	2082	3.795342	TCGCGCGTCATCTCGTCA	61.795	61.111	30.98	2.41	0.00	4.35
1870	2275	3.744719	AAGCTCGTAGGCGTCGCA	61.745	61.111	20.50	0.00	37.79	5.10
1991	2396	2.116736	TTGCAGCCGAAAGAAGTGCG	62.117	55.000	0.00	0.00	36.92	5.34
1994	2399	2.331265	GGTTGCAGCCGAAAGAAGT	58.669	52.632	2.95	0.00	0.00	3.01
2022	2427	0.456221	CGAGGACGACATACTTGCCT	59.544	55.000	0.00	0.00	42.66	4.75
2031	2436	2.050714	GTGTTCGCGAGGACGACA	60.051	61.111	9.59	7.81	44.80	4.35
2077	2482	0.538977	GCCTCATGCATACCAGCCAT	60.539	55.000	0.00	0.00	40.77	4.40
2082	2487	3.425122	CATGGCCTCATGCATACCA	57.575	52.632	3.32	5.60	43.44	3.25
2267	2672	0.464036	ATCGCCGAAGCAGTCCATAA	59.536	50.000	0.00	0.00	39.83	1.90
2273	2678	2.046892	AGCAATCGCCGAAGCAGT	60.047	55.556	15.61	0.00	39.83	4.40
2274	2679	2.402388	CAGCAATCGCCGAAGCAG	59.598	61.111	15.61	5.47	39.83	4.24
2275	2680	3.803082	GCAGCAATCGCCGAAGCA	61.803	61.111	15.61	0.00	39.83	3.91
2276	2681	3.503363	AGCAGCAATCGCCGAAGC	61.503	61.111	6.78	6.78	39.83	3.86
2277	2682	2.402388	CAGCAGCAATCGCCGAAG	59.598	61.111	0.00	0.00	39.83	3.79
2278	2683	3.126879	CCAGCAGCAATCGCCGAA	61.127	61.111	0.00	0.00	39.83	4.30
2284	2692	0.179062	ATCTCCGACCAGCAGCAATC	60.179	55.000	0.00	0.00	0.00	2.67
2287	2695	2.285773	ACATCTCCGACCAGCAGCA	61.286	57.895	0.00	0.00	0.00	4.41
2398	2808	2.814805	AACATCCCCTTCAGATGGTG	57.185	50.000	5.80	0.00	44.45	4.17
2487	2897	0.251787	TGGCACTAGCTGACCTGAGA	60.252	55.000	0.00	0.00	41.70	3.27
2656	3077	2.094675	CAACTTTGCCCACCTGATAGG	58.905	52.381	0.00	0.00	42.49	2.57
2657	3078	3.012518	CTCAACTTTGCCCACCTGATAG	58.987	50.000	0.00	0.00	0.00	2.08
2658	3079	2.290896	CCTCAACTTTGCCCACCTGATA	60.291	50.000	0.00	0.00	0.00	2.15
2659	3080	1.548582	CCTCAACTTTGCCCACCTGAT	60.549	52.381	0.00	0.00	0.00	2.90
2660	3081	0.178992	CCTCAACTTTGCCCACCTGA	60.179	55.000	0.00	0.00	0.00	3.86
2661	3082	1.809567	GCCTCAACTTTGCCCACCTG	61.810	60.000	0.00	0.00	0.00	4.00
2662	3083	1.531602	GCCTCAACTTTGCCCACCT	60.532	57.895	0.00	0.00	0.00	4.00
2663	3084	1.832167	TGCCTCAACTTTGCCCACC	60.832	57.895	0.00	0.00	0.00	4.61
2664	3085	1.363807	GTGCCTCAACTTTGCCCAC	59.636	57.895	0.00	0.00	0.00	4.61
2665	3086	1.832167	GGTGCCTCAACTTTGCCCA	60.832	57.895	0.00	0.00	0.00	5.36
2666	3087	1.809567	CTGGTGCCTCAACTTTGCCC	61.810	60.000	0.00	0.00	0.00	5.36
2667	3088	0.823356	TCTGGTGCCTCAACTTTGCC	60.823	55.000	0.00	0.00	0.00	4.52
2668	3089	0.312102	GTCTGGTGCCTCAACTTTGC	59.688	55.000	0.00	0.00	0.00	3.68
2688	3109	4.074799	TGTGGGAAGAGGAGGAAATAGA	57.925	45.455	0.00	0.00	0.00	1.98
2750	3171	5.740406	TCGTTTGTCCGAAAAGAATAACAC	58.260	37.500	0.00	0.00	33.15	3.32
2906	3329	5.440685	CGGAAAGATTCAGTGTAACAACAC	58.559	41.667	0.38	0.38	41.43	3.32
2907	3330	4.513692	CCGGAAAGATTCAGTGTAACAACA	59.486	41.667	0.00	0.00	41.43	3.33
2908	3331	4.753107	TCCGGAAAGATTCAGTGTAACAAC	59.247	41.667	0.00	0.00	41.43	3.32
2909	3332	4.753107	GTCCGGAAAGATTCAGTGTAACAA	59.247	41.667	5.23	0.00	41.43	2.83
2928	3354	3.424302	CGTTCATGGTGTAATGTTGTCCG	60.424	47.826	0.00	0.00	0.00	4.79
2949	3375	2.487934	CCCAACTGATAATGCTCTCCG	58.512	52.381	0.00	0.00	0.00	4.63
2988	3414	1.068417	CTTTGTCGTCGGTGTGGGA	59.932	57.895	0.00	0.00	0.00	4.37
3066	3492	8.613482	GCCTATATCTTCTTTTGTGGAAGTTAC	58.387	37.037	0.00	0.00	40.50	2.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.