Multiple sequence alignment - TraesCS7D01G388800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G388800 chr7D 100.000 3727 0 0 1 3727 503839068 503835342 0.000000e+00 6883
1 TraesCS7D01G388800 chr7D 89.523 2873 209 35 878 3727 531067736 531064933 0.000000e+00 3554
2 TraesCS7D01G388800 chr7D 89.215 2865 211 48 887 3727 586698690 586695900 0.000000e+00 3489
3 TraesCS7D01G388800 chr7D 97.270 586 15 1 1 585 295299595 295300180 0.000000e+00 992
4 TraesCS7D01G388800 chr7D 97.265 585 15 1 1 584 118589767 118589183 0.000000e+00 990
5 TraesCS7D01G388800 chr3D 93.427 2860 163 11 885 3727 383173069 383170218 0.000000e+00 4217
6 TraesCS7D01G388800 chr3D 89.439 2869 212 35 887 3727 334133 336938 0.000000e+00 3535
7 TraesCS7D01G388800 chr3D 89.330 1762 151 27 887 2636 149758703 149760439 0.000000e+00 2178
8 TraesCS7D01G388800 chr3D 97.274 587 14 1 1 585 250902018 250901432 0.000000e+00 994
9 TraesCS7D01G388800 chr4D 93.894 2424 124 9 887 3294 470184638 470182223 0.000000e+00 3635
10 TraesCS7D01G388800 chr4D 89.753 2869 203 38 887 3727 491381490 491384295 0.000000e+00 3585
11 TraesCS7D01G388800 chr4D 86.280 1793 168 49 887 2636 477884446 477882689 0.000000e+00 1877
12 TraesCS7D01G388800 chr2D 89.558 2873 208 38 883 3727 617340741 617343549 0.000000e+00 3559
13 TraesCS7D01G388800 chr2D 97.458 590 14 1 1 589 11589741 11590330 0.000000e+00 1005
14 TraesCS7D01G388800 chr2D 97.427 583 15 0 1 583 38187396 38186814 0.000000e+00 994
15 TraesCS7D01G388800 chr2D 97.423 582 15 0 1 582 51187358 51187939 0.000000e+00 992
16 TraesCS7D01G388800 chr2D 97.256 583 16 0 1 583 631901747 631902329 0.000000e+00 989
17 TraesCS7D01G388800 chr2D 96.500 600 15 3 1 596 20074175 20073578 0.000000e+00 987
18 TraesCS7D01G388800 chr1D 89.578 2869 207 38 887 3727 316243968 316241164 0.000000e+00 3557
19 TraesCS7D01G388800 chr7B 89.431 2848 228 26 882 3714 43570132 43572921 0.000000e+00 3524
20 TraesCS7D01G388800 chr7B 82.609 299 42 8 915 1210 43574754 43574463 4.780000e-64 255
21 TraesCS7D01G388800 chr6D 89.327 2867 210 34 887 3727 25731321 25734117 0.000000e+00 3511
22 TraesCS7D01G388800 chr6D 97.599 583 14 0 1 583 466258890 466258308 0.000000e+00 1000
23 TraesCS7D01G388800 chr1A 93.761 2180 104 12 887 3054 518113446 518115605 0.000000e+00 3243
24 TraesCS7D01G388800 chr5D 89.619 1994 131 26 1754 3727 333089982 333091919 0.000000e+00 2466
25 TraesCS7D01G388800 chr5D 89.161 1513 124 27 1137 2636 375443011 375444496 0.000000e+00 1849
26 TraesCS7D01G388800 chr5D 89.784 1204 89 14 2529 3727 27864732 27865906 0.000000e+00 1511
27 TraesCS7D01G388800 chr4A 86.399 1794 171 46 879 2636 608866359 608864603 0.000000e+00 1893
28 TraesCS7D01G388800 chr4A 87.710 1310 114 21 887 2176 731191683 731190401 0.000000e+00 1483
29 TraesCS7D01G388800 chr4A 83.436 326 48 6 887 1210 478249416 478249095 7.830000e-77 298
30 TraesCS7D01G388800 chr4A 80.488 328 45 16 887 1205 573683392 573683075 2.240000e-57 233
31 TraesCS7D01G388800 chr3A 85.994 1785 181 42 887 2636 714630150 714631900 0.000000e+00 1847
32 TraesCS7D01G388800 chr2B 84.719 445 37 6 2447 2861 547868989 547869432 2.070000e-112 416


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G388800 chr7D 503835342 503839068 3726 True 6883 6883 100.000 1 3727 1 chr7D.!!$R2 3726
1 TraesCS7D01G388800 chr7D 531064933 531067736 2803 True 3554 3554 89.523 878 3727 1 chr7D.!!$R3 2849
2 TraesCS7D01G388800 chr7D 586695900 586698690 2790 True 3489 3489 89.215 887 3727 1 chr7D.!!$R4 2840
3 TraesCS7D01G388800 chr7D 295299595 295300180 585 False 992 992 97.270 1 585 1 chr7D.!!$F1 584
4 TraesCS7D01G388800 chr7D 118589183 118589767 584 True 990 990 97.265 1 584 1 chr7D.!!$R1 583
5 TraesCS7D01G388800 chr3D 383170218 383173069 2851 True 4217 4217 93.427 885 3727 1 chr3D.!!$R2 2842
6 TraesCS7D01G388800 chr3D 334133 336938 2805 False 3535 3535 89.439 887 3727 1 chr3D.!!$F1 2840
7 TraesCS7D01G388800 chr3D 149758703 149760439 1736 False 2178 2178 89.330 887 2636 1 chr3D.!!$F2 1749
8 TraesCS7D01G388800 chr3D 250901432 250902018 586 True 994 994 97.274 1 585 1 chr3D.!!$R1 584
9 TraesCS7D01G388800 chr4D 470182223 470184638 2415 True 3635 3635 93.894 887 3294 1 chr4D.!!$R1 2407
10 TraesCS7D01G388800 chr4D 491381490 491384295 2805 False 3585 3585 89.753 887 3727 1 chr4D.!!$F1 2840
11 TraesCS7D01G388800 chr4D 477882689 477884446 1757 True 1877 1877 86.280 887 2636 1 chr4D.!!$R2 1749
12 TraesCS7D01G388800 chr2D 617340741 617343549 2808 False 3559 3559 89.558 883 3727 1 chr2D.!!$F3 2844
13 TraesCS7D01G388800 chr2D 11589741 11590330 589 False 1005 1005 97.458 1 589 1 chr2D.!!$F1 588
14 TraesCS7D01G388800 chr2D 38186814 38187396 582 True 994 994 97.427 1 583 1 chr2D.!!$R2 582
15 TraesCS7D01G388800 chr2D 51187358 51187939 581 False 992 992 97.423 1 582 1 chr2D.!!$F2 581
16 TraesCS7D01G388800 chr2D 631901747 631902329 582 False 989 989 97.256 1 583 1 chr2D.!!$F4 582
17 TraesCS7D01G388800 chr2D 20073578 20074175 597 True 987 987 96.500 1 596 1 chr2D.!!$R1 595
18 TraesCS7D01G388800 chr1D 316241164 316243968 2804 True 3557 3557 89.578 887 3727 1 chr1D.!!$R1 2840
19 TraesCS7D01G388800 chr7B 43570132 43572921 2789 False 3524 3524 89.431 882 3714 1 chr7B.!!$F1 2832
20 TraesCS7D01G388800 chr6D 25731321 25734117 2796 False 3511 3511 89.327 887 3727 1 chr6D.!!$F1 2840
21 TraesCS7D01G388800 chr6D 466258308 466258890 582 True 1000 1000 97.599 1 583 1 chr6D.!!$R1 582
22 TraesCS7D01G388800 chr1A 518113446 518115605 2159 False 3243 3243 93.761 887 3054 1 chr1A.!!$F1 2167
23 TraesCS7D01G388800 chr5D 333089982 333091919 1937 False 2466 2466 89.619 1754 3727 1 chr5D.!!$F2 1973
24 TraesCS7D01G388800 chr5D 375443011 375444496 1485 False 1849 1849 89.161 1137 2636 1 chr5D.!!$F3 1499
25 TraesCS7D01G388800 chr5D 27864732 27865906 1174 False 1511 1511 89.784 2529 3727 1 chr5D.!!$F1 1198
26 TraesCS7D01G388800 chr4A 608864603 608866359 1756 True 1893 1893 86.399 879 2636 1 chr4A.!!$R3 1757
27 TraesCS7D01G388800 chr4A 731190401 731191683 1282 True 1483 1483 87.710 887 2176 1 chr4A.!!$R4 1289
28 TraesCS7D01G388800 chr3A 714630150 714631900 1750 False 1847 1847 85.994 887 2636 1 chr3A.!!$F1 1749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 824 0.032130 CGTAGGGGGTGATGATGTCG 59.968 60.0 0.00 0.00 0.00 4.35 F
842 850 0.035056 GGCCATGTAAGGTGACAGCT 60.035 55.0 0.07 0.07 31.51 4.24 F
863 871 0.108585 AGAACTGGGAATGTGTGCGT 59.891 50.0 0.00 0.00 0.00 5.24 F
865 873 0.179032 AACTGGGAATGTGTGCGTGA 60.179 50.0 0.00 0.00 0.00 4.35 F
866 874 0.179032 ACTGGGAATGTGTGCGTGAA 60.179 50.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2055 1.909302 CTACCCACTCCAGAACACCAT 59.091 52.381 0.00 0.0 0.00 3.55 R
2116 2218 3.041211 ACCAGCTGGCTATACTGATTGA 58.959 45.455 33.06 0.0 39.32 2.57 R
2671 2792 3.084786 GCATCAGGATAGTATTTGGGCC 58.915 50.000 0.00 0.0 0.00 5.80 R
2681 2802 3.387374 ACCAGTTCTCAGCATCAGGATAG 59.613 47.826 0.00 0.0 0.00 2.08 R
2732 2853 6.800408 CACAGAAATAAACTGCATCAGACTTG 59.200 38.462 0.29 0.0 38.74 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 2.968206 GTCTCCGCGGTGTACCTT 59.032 61.111 27.15 0.00 0.00 3.50
251 252 0.109086 AGCTCGACATCCACTTCGTG 60.109 55.000 0.00 0.00 36.60 4.35
498 500 6.621316 ATGTACGTGTATCTTAGGAGACAG 57.379 41.667 2.12 0.85 43.15 3.51
561 569 2.611751 TGCACGGTCAATCAATTATCGG 59.388 45.455 0.00 0.00 0.00 4.18
589 597 7.094805 GCACCAAATCATTCTCTACAGTTTGTA 60.095 37.037 0.00 0.00 0.00 2.41
590 598 8.230486 CACCAAATCATTCTCTACAGTTTGTAC 58.770 37.037 0.00 0.00 0.00 2.90
591 599 7.117812 ACCAAATCATTCTCTACAGTTTGTACG 59.882 37.037 0.00 0.00 0.00 3.67
592 600 7.413000 CCAAATCATTCTCTACAGTTTGTACGG 60.413 40.741 0.00 0.00 0.00 4.02
593 601 5.717078 TCATTCTCTACAGTTTGTACGGT 57.283 39.130 0.00 0.00 36.61 4.83
594 602 6.092955 TCATTCTCTACAGTTTGTACGGTT 57.907 37.500 0.00 0.00 34.46 4.44
595 603 5.924254 TCATTCTCTACAGTTTGTACGGTTG 59.076 40.000 0.00 0.00 34.46 3.77
596 604 4.247267 TCTCTACAGTTTGTACGGTTGG 57.753 45.455 0.00 0.00 34.46 3.77
597 605 3.638160 TCTCTACAGTTTGTACGGTTGGT 59.362 43.478 0.00 0.00 34.46 3.67
598 606 3.719924 TCTACAGTTTGTACGGTTGGTG 58.280 45.455 0.00 0.00 34.46 4.17
599 607 2.695127 ACAGTTTGTACGGTTGGTGA 57.305 45.000 0.00 0.00 27.57 4.02
600 608 2.282407 ACAGTTTGTACGGTTGGTGAC 58.718 47.619 0.00 0.00 27.57 3.67
601 609 2.281517 CAGTTTGTACGGTTGGTGACA 58.718 47.619 0.00 0.00 39.83 3.58
602 610 2.875933 CAGTTTGTACGGTTGGTGACAT 59.124 45.455 0.00 0.00 42.32 3.06
603 611 3.059188 CAGTTTGTACGGTTGGTGACATC 60.059 47.826 0.00 0.00 42.32 3.06
604 612 3.135994 GTTTGTACGGTTGGTGACATCT 58.864 45.455 0.00 0.00 42.32 2.90
605 613 2.736144 TGTACGGTTGGTGACATCTC 57.264 50.000 0.00 0.00 42.32 2.75
606 614 1.068125 TGTACGGTTGGTGACATCTCG 60.068 52.381 0.00 0.00 42.32 4.04
607 615 1.200716 GTACGGTTGGTGACATCTCGA 59.799 52.381 4.29 0.00 42.32 4.04
608 616 0.895530 ACGGTTGGTGACATCTCGAT 59.104 50.000 0.00 0.00 42.32 3.59
609 617 1.280982 CGGTTGGTGACATCTCGATG 58.719 55.000 5.40 5.40 42.32 3.84
610 618 1.135112 CGGTTGGTGACATCTCGATGA 60.135 52.381 13.45 0.00 42.32 2.92
611 619 2.673893 CGGTTGGTGACATCTCGATGAA 60.674 50.000 13.45 0.00 42.32 2.57
612 620 3.334691 GGTTGGTGACATCTCGATGAAA 58.665 45.455 13.45 0.00 42.32 2.69
613 621 3.941483 GGTTGGTGACATCTCGATGAAAT 59.059 43.478 13.45 0.00 42.32 2.17
614 622 4.201851 GGTTGGTGACATCTCGATGAAATG 60.202 45.833 13.45 0.00 42.32 2.32
615 623 4.470334 TGGTGACATCTCGATGAAATGA 57.530 40.909 13.45 0.00 41.20 2.57
616 624 5.027293 TGGTGACATCTCGATGAAATGAT 57.973 39.130 13.45 0.00 41.20 2.45
617 625 6.160576 TGGTGACATCTCGATGAAATGATA 57.839 37.500 13.45 0.00 41.20 2.15
618 626 6.218746 TGGTGACATCTCGATGAAATGATAG 58.781 40.000 13.45 0.00 41.20 2.08
619 627 5.636965 GGTGACATCTCGATGAAATGATAGG 59.363 44.000 13.45 0.00 41.20 2.57
620 628 6.219473 GTGACATCTCGATGAAATGATAGGT 58.781 40.000 13.45 0.00 41.20 3.08
621 629 6.145209 GTGACATCTCGATGAAATGATAGGTG 59.855 42.308 13.45 0.00 41.20 4.00
622 630 4.993584 ACATCTCGATGAAATGATAGGTGC 59.006 41.667 13.45 0.00 41.20 5.01
623 631 3.642705 TCTCGATGAAATGATAGGTGCG 58.357 45.455 0.00 0.00 0.00 5.34
624 632 3.317993 TCTCGATGAAATGATAGGTGCGA 59.682 43.478 0.00 0.00 0.00 5.10
625 633 3.642705 TCGATGAAATGATAGGTGCGAG 58.357 45.455 0.00 0.00 0.00 5.03
626 634 3.068165 TCGATGAAATGATAGGTGCGAGT 59.932 43.478 0.00 0.00 0.00 4.18
627 635 4.277423 TCGATGAAATGATAGGTGCGAGTA 59.723 41.667 0.00 0.00 0.00 2.59
628 636 4.982295 CGATGAAATGATAGGTGCGAGTAA 59.018 41.667 0.00 0.00 0.00 2.24
629 637 5.635280 CGATGAAATGATAGGTGCGAGTAAT 59.365 40.000 0.00 0.00 0.00 1.89
630 638 6.146184 CGATGAAATGATAGGTGCGAGTAATT 59.854 38.462 0.00 0.00 0.00 1.40
631 639 6.603237 TGAAATGATAGGTGCGAGTAATTG 57.397 37.500 0.00 0.00 0.00 2.32
632 640 5.007626 TGAAATGATAGGTGCGAGTAATTGC 59.992 40.000 0.00 0.00 0.00 3.56
633 641 3.535280 TGATAGGTGCGAGTAATTGCA 57.465 42.857 0.00 0.00 39.13 4.08
634 642 3.867857 TGATAGGTGCGAGTAATTGCAA 58.132 40.909 6.68 0.00 43.75 4.08
635 643 4.257731 TGATAGGTGCGAGTAATTGCAAA 58.742 39.130 6.68 0.00 43.75 3.68
636 644 4.881273 TGATAGGTGCGAGTAATTGCAAAT 59.119 37.500 6.68 0.00 43.75 2.32
637 645 5.356751 TGATAGGTGCGAGTAATTGCAAATT 59.643 36.000 6.68 1.18 43.75 1.82
638 646 4.519540 AGGTGCGAGTAATTGCAAATTT 57.480 36.364 6.68 0.00 43.75 1.82
639 647 4.881920 AGGTGCGAGTAATTGCAAATTTT 58.118 34.783 6.68 0.00 43.75 1.82
640 648 4.923281 AGGTGCGAGTAATTGCAAATTTTC 59.077 37.500 6.68 0.00 43.75 2.29
641 649 4.923281 GGTGCGAGTAATTGCAAATTTTCT 59.077 37.500 6.68 0.00 43.75 2.52
642 650 5.060940 GGTGCGAGTAATTGCAAATTTTCTC 59.939 40.000 6.68 6.30 43.75 2.87
643 651 5.629020 GTGCGAGTAATTGCAAATTTTCTCA 59.371 36.000 6.68 0.00 43.75 3.27
644 652 5.629020 TGCGAGTAATTGCAAATTTTCTCAC 59.371 36.000 1.71 2.12 38.34 3.51
645 653 5.858581 GCGAGTAATTGCAAATTTTCTCACT 59.141 36.000 1.71 0.00 0.00 3.41
646 654 6.183359 GCGAGTAATTGCAAATTTTCTCACTG 60.183 38.462 1.71 0.00 0.00 3.66
647 655 7.077605 CGAGTAATTGCAAATTTTCTCACTGA 58.922 34.615 1.71 0.00 0.00 3.41
648 656 7.059945 CGAGTAATTGCAAATTTTCTCACTGAC 59.940 37.037 1.71 0.00 0.00 3.51
649 657 6.857964 AGTAATTGCAAATTTTCTCACTGACG 59.142 34.615 1.71 0.00 0.00 4.35
650 658 4.891627 TTGCAAATTTTCTCACTGACGA 57.108 36.364 0.00 0.00 0.00 4.20
651 659 4.209452 TGCAAATTTTCTCACTGACGAC 57.791 40.909 0.00 0.00 0.00 4.34
652 660 3.625313 TGCAAATTTTCTCACTGACGACA 59.375 39.130 0.00 0.00 0.00 4.35
653 661 4.095632 TGCAAATTTTCTCACTGACGACAA 59.904 37.500 0.00 0.00 0.00 3.18
654 662 5.034152 GCAAATTTTCTCACTGACGACAAA 58.966 37.500 0.00 0.00 0.00 2.83
655 663 5.172053 GCAAATTTTCTCACTGACGACAAAG 59.828 40.000 0.00 0.00 0.00 2.77
656 664 6.258160 CAAATTTTCTCACTGACGACAAAGT 58.742 36.000 0.00 0.00 0.00 2.66
657 665 7.406553 CAAATTTTCTCACTGACGACAAAGTA 58.593 34.615 0.00 0.00 0.00 2.24
658 666 6.771188 ATTTTCTCACTGACGACAAAGTAG 57.229 37.500 0.00 0.00 0.00 2.57
659 667 3.917329 TCTCACTGACGACAAAGTAGG 57.083 47.619 0.00 0.00 0.00 3.18
660 668 2.030185 TCTCACTGACGACAAAGTAGGC 60.030 50.000 0.00 0.00 0.00 3.93
661 669 1.961394 TCACTGACGACAAAGTAGGCT 59.039 47.619 0.00 0.00 0.00 4.58
662 670 2.364324 TCACTGACGACAAAGTAGGCTT 59.636 45.455 0.00 0.00 36.30 4.35
663 671 2.476619 CACTGACGACAAAGTAGGCTTG 59.523 50.000 0.00 0.00 34.71 4.01
664 672 2.102588 ACTGACGACAAAGTAGGCTTGT 59.897 45.455 0.00 0.00 34.71 3.16
665 673 2.476619 CTGACGACAAAGTAGGCTTGTG 59.523 50.000 0.00 0.00 34.71 3.33
666 674 2.101750 TGACGACAAAGTAGGCTTGTGA 59.898 45.455 0.00 0.00 34.71 3.58
667 675 2.475487 GACGACAAAGTAGGCTTGTGAC 59.525 50.000 0.00 0.00 34.71 3.67
668 676 2.159014 ACGACAAAGTAGGCTTGTGACA 60.159 45.455 0.00 0.00 34.71 3.58
669 677 2.476619 CGACAAAGTAGGCTTGTGACAG 59.523 50.000 0.00 0.00 34.71 3.51
670 678 3.467803 GACAAAGTAGGCTTGTGACAGT 58.532 45.455 0.00 0.00 34.71 3.55
671 679 3.877508 GACAAAGTAGGCTTGTGACAGTT 59.122 43.478 0.00 0.00 34.71 3.16
672 680 5.031066 ACAAAGTAGGCTTGTGACAGTTA 57.969 39.130 0.00 0.00 34.71 2.24
673 681 5.057149 ACAAAGTAGGCTTGTGACAGTTAG 58.943 41.667 0.00 0.00 34.71 2.34
674 682 3.320673 AGTAGGCTTGTGACAGTTAGC 57.679 47.619 0.00 0.00 0.00 3.09
675 683 2.632996 AGTAGGCTTGTGACAGTTAGCA 59.367 45.455 9.64 0.00 35.36 3.49
676 684 2.867109 AGGCTTGTGACAGTTAGCAT 57.133 45.000 9.64 0.00 35.36 3.79
677 685 3.981071 AGGCTTGTGACAGTTAGCATA 57.019 42.857 9.64 0.00 35.36 3.14
678 686 3.866651 AGGCTTGTGACAGTTAGCATAG 58.133 45.455 9.64 0.00 35.36 2.23
679 687 3.515502 AGGCTTGTGACAGTTAGCATAGA 59.484 43.478 9.64 0.00 35.36 1.98
680 688 4.163078 AGGCTTGTGACAGTTAGCATAGAT 59.837 41.667 9.64 0.00 35.36 1.98
681 689 4.878397 GGCTTGTGACAGTTAGCATAGATT 59.122 41.667 9.64 0.00 35.36 2.40
682 690 5.220739 GGCTTGTGACAGTTAGCATAGATTG 60.221 44.000 9.64 0.00 35.36 2.67
683 691 5.582269 GCTTGTGACAGTTAGCATAGATTGA 59.418 40.000 3.06 0.00 33.88 2.57
684 692 6.092670 GCTTGTGACAGTTAGCATAGATTGAA 59.907 38.462 3.06 0.00 33.88 2.69
685 693 7.201679 GCTTGTGACAGTTAGCATAGATTGAAT 60.202 37.037 3.06 0.00 33.88 2.57
686 694 7.543947 TGTGACAGTTAGCATAGATTGAATG 57.456 36.000 0.00 0.00 0.00 2.67
687 695 6.539826 TGTGACAGTTAGCATAGATTGAATGG 59.460 38.462 0.00 0.00 0.00 3.16
688 696 5.528690 TGACAGTTAGCATAGATTGAATGGC 59.471 40.000 0.00 0.00 0.00 4.40
689 697 5.439721 ACAGTTAGCATAGATTGAATGGCA 58.560 37.500 0.00 0.00 0.00 4.92
690 698 5.887598 ACAGTTAGCATAGATTGAATGGCAA 59.112 36.000 0.00 0.00 41.53 4.52
691 699 6.377996 ACAGTTAGCATAGATTGAATGGCAAA 59.622 34.615 0.00 0.00 40.48 3.68
692 700 7.093814 ACAGTTAGCATAGATTGAATGGCAAAA 60.094 33.333 0.00 0.00 40.48 2.44
693 701 7.924412 CAGTTAGCATAGATTGAATGGCAAAAT 59.076 33.333 0.00 0.00 40.48 1.82
694 702 8.480501 AGTTAGCATAGATTGAATGGCAAAATT 58.519 29.630 0.00 0.00 40.48 1.82
695 703 8.758715 GTTAGCATAGATTGAATGGCAAAATTC 58.241 33.333 0.00 0.00 40.48 2.17
696 704 5.981315 AGCATAGATTGAATGGCAAAATTCG 59.019 36.000 0.00 0.00 40.48 3.34
697 705 5.750067 GCATAGATTGAATGGCAAAATTCGT 59.250 36.000 0.00 0.00 40.48 3.85
698 706 6.074676 GCATAGATTGAATGGCAAAATTCGTC 60.075 38.462 0.00 0.00 40.48 4.20
699 707 4.414852 AGATTGAATGGCAAAATTCGTCG 58.585 39.130 0.00 0.00 40.48 5.12
700 708 1.975837 TGAATGGCAAAATTCGTCGC 58.024 45.000 0.00 0.00 39.06 5.19
701 709 1.268265 GAATGGCAAAATTCGTCGCC 58.732 50.000 0.00 0.00 45.11 5.54
702 710 0.108851 AATGGCAAAATTCGTCGCCC 60.109 50.000 0.00 0.00 44.22 6.13
703 711 1.247419 ATGGCAAAATTCGTCGCCCA 61.247 50.000 0.00 0.00 44.22 5.36
704 712 1.247419 TGGCAAAATTCGTCGCCCAT 61.247 50.000 0.00 0.00 44.22 4.00
705 713 0.801836 GGCAAAATTCGTCGCCCATG 60.802 55.000 0.00 0.00 38.67 3.66
706 714 0.170116 GCAAAATTCGTCGCCCATGA 59.830 50.000 0.00 0.00 0.00 3.07
707 715 1.202290 GCAAAATTCGTCGCCCATGAT 60.202 47.619 0.00 0.00 0.00 2.45
708 716 2.032799 GCAAAATTCGTCGCCCATGATA 59.967 45.455 0.00 0.00 0.00 2.15
709 717 3.304659 GCAAAATTCGTCGCCCATGATAT 60.305 43.478 0.00 0.00 0.00 1.63
710 718 4.083537 GCAAAATTCGTCGCCCATGATATA 60.084 41.667 0.00 0.00 0.00 0.86
711 719 5.391950 GCAAAATTCGTCGCCCATGATATAT 60.392 40.000 0.00 0.00 0.00 0.86
712 720 5.801350 AAATTCGTCGCCCATGATATATG 57.199 39.130 0.00 0.00 0.00 1.78
713 721 4.736126 ATTCGTCGCCCATGATATATGA 57.264 40.909 0.00 0.00 0.00 2.15
714 722 4.736126 TTCGTCGCCCATGATATATGAT 57.264 40.909 0.00 0.00 0.00 2.45
715 723 4.736126 TCGTCGCCCATGATATATGATT 57.264 40.909 0.00 0.00 0.00 2.57
716 724 5.084818 TCGTCGCCCATGATATATGATTT 57.915 39.130 0.00 0.00 0.00 2.17
717 725 4.869861 TCGTCGCCCATGATATATGATTTG 59.130 41.667 0.00 0.00 0.00 2.32
718 726 4.869861 CGTCGCCCATGATATATGATTTGA 59.130 41.667 0.00 0.00 0.00 2.69
719 727 5.006068 CGTCGCCCATGATATATGATTTGAG 59.994 44.000 0.00 0.00 0.00 3.02
720 728 4.877823 TCGCCCATGATATATGATTTGAGC 59.122 41.667 0.00 0.00 0.00 4.26
721 729 4.880120 CGCCCATGATATATGATTTGAGCT 59.120 41.667 0.00 0.00 0.00 4.09
722 730 5.356190 CGCCCATGATATATGATTTGAGCTT 59.644 40.000 0.00 0.00 0.00 3.74
723 731 6.127814 CGCCCATGATATATGATTTGAGCTTT 60.128 38.462 0.00 0.00 0.00 3.51
724 732 7.576287 CGCCCATGATATATGATTTGAGCTTTT 60.576 37.037 0.00 0.00 0.00 2.27
725 733 8.092687 GCCCATGATATATGATTTGAGCTTTTT 58.907 33.333 0.00 0.00 0.00 1.94
746 754 6.918892 TTTTTCGTCTGAGTTGATTCTTCA 57.081 33.333 0.00 0.00 0.00 3.02
747 755 7.496529 TTTTTCGTCTGAGTTGATTCTTCAT 57.503 32.000 0.00 0.00 0.00 2.57
748 756 6.471976 TTTCGTCTGAGTTGATTCTTCATG 57.528 37.500 0.00 0.00 0.00 3.07
749 757 5.139435 TCGTCTGAGTTGATTCTTCATGT 57.861 39.130 0.00 0.00 0.00 3.21
750 758 5.164233 TCGTCTGAGTTGATTCTTCATGTC 58.836 41.667 0.00 0.00 0.00 3.06
751 759 4.031089 CGTCTGAGTTGATTCTTCATGTCG 59.969 45.833 0.00 0.00 0.00 4.35
752 760 5.164233 GTCTGAGTTGATTCTTCATGTCGA 58.836 41.667 0.00 0.00 0.00 4.20
753 761 5.809562 GTCTGAGTTGATTCTTCATGTCGAT 59.190 40.000 0.00 0.00 0.00 3.59
754 762 5.809051 TCTGAGTTGATTCTTCATGTCGATG 59.191 40.000 0.00 0.00 0.00 3.84
755 763 5.723295 TGAGTTGATTCTTCATGTCGATGA 58.277 37.500 0.00 0.00 36.78 2.92
756 764 5.809051 TGAGTTGATTCTTCATGTCGATGAG 59.191 40.000 0.00 0.00 39.81 2.90
757 765 5.114780 AGTTGATTCTTCATGTCGATGAGG 58.885 41.667 0.00 0.00 39.81 3.86
758 766 4.743057 TGATTCTTCATGTCGATGAGGT 57.257 40.909 0.00 0.00 39.81 3.85
759 767 4.686972 TGATTCTTCATGTCGATGAGGTC 58.313 43.478 0.00 0.00 39.81 3.85
760 768 3.526931 TTCTTCATGTCGATGAGGTCC 57.473 47.619 0.00 0.00 39.81 4.46
761 769 1.757118 TCTTCATGTCGATGAGGTCCC 59.243 52.381 0.00 0.00 39.81 4.46
762 770 0.459899 TTCATGTCGATGAGGTCCCG 59.540 55.000 0.00 0.00 39.81 5.14
763 771 0.395173 TCATGTCGATGAGGTCCCGA 60.395 55.000 0.00 0.00 33.40 5.14
764 772 0.676184 CATGTCGATGAGGTCCCGAT 59.324 55.000 0.00 0.00 34.71 4.18
765 773 0.676184 ATGTCGATGAGGTCCCGATG 59.324 55.000 0.00 0.00 34.71 3.84
766 774 1.364171 GTCGATGAGGTCCCGATGG 59.636 63.158 0.00 0.00 34.71 3.51
767 775 2.029666 CGATGAGGTCCCGATGGC 59.970 66.667 0.00 0.00 0.00 4.40
768 776 2.502492 CGATGAGGTCCCGATGGCT 61.502 63.158 0.00 0.00 0.00 4.75
769 777 1.369321 GATGAGGTCCCGATGGCTC 59.631 63.158 0.00 0.00 0.00 4.70
770 778 2.105806 GATGAGGTCCCGATGGCTCC 62.106 65.000 0.00 0.00 0.00 4.70
771 779 2.764128 GAGGTCCCGATGGCTCCA 60.764 66.667 0.00 0.00 0.00 3.86
772 780 2.285368 AGGTCCCGATGGCTCCAA 60.285 61.111 0.00 0.00 0.00 3.53
773 781 2.190578 GGTCCCGATGGCTCCAAG 59.809 66.667 0.00 0.00 0.00 3.61
774 782 2.190578 GTCCCGATGGCTCCAAGG 59.809 66.667 6.76 6.76 0.00 3.61
775 783 2.285368 TCCCGATGGCTCCAAGGT 60.285 61.111 11.18 0.00 0.00 3.50
776 784 2.190578 CCCGATGGCTCCAAGGTC 59.809 66.667 11.18 0.00 0.00 3.85
777 785 2.190578 CCGATGGCTCCAAGGTCC 59.809 66.667 0.00 0.00 0.00 4.46
778 786 2.669133 CCGATGGCTCCAAGGTCCA 61.669 63.158 0.00 5.59 0.00 4.02
779 787 1.299648 CGATGGCTCCAAGGTCCAA 59.700 57.895 6.87 0.00 33.04 3.53
780 788 1.026718 CGATGGCTCCAAGGTCCAAC 61.027 60.000 6.87 4.43 33.04 3.77
781 789 0.681243 GATGGCTCCAAGGTCCAACC 60.681 60.000 6.87 0.00 38.99 3.77
782 790 1.434513 ATGGCTCCAAGGTCCAACCA 61.435 55.000 0.00 0.00 41.95 3.67
783 791 1.152830 GGCTCCAAGGTCCAACCAA 59.847 57.895 0.00 0.00 41.95 3.67
784 792 1.179174 GGCTCCAAGGTCCAACCAAC 61.179 60.000 0.00 0.00 41.95 3.77
785 793 0.467290 GCTCCAAGGTCCAACCAACA 60.467 55.000 0.00 0.00 41.95 3.33
786 794 2.026905 GCTCCAAGGTCCAACCAACAA 61.027 52.381 0.00 0.00 41.95 2.83
787 795 2.597455 CTCCAAGGTCCAACCAACAAT 58.403 47.619 0.00 0.00 41.95 2.71
788 796 2.965147 CTCCAAGGTCCAACCAACAATT 59.035 45.455 0.00 0.00 41.95 2.32
789 797 2.962421 TCCAAGGTCCAACCAACAATTC 59.038 45.455 0.00 0.00 41.95 2.17
790 798 2.965147 CCAAGGTCCAACCAACAATTCT 59.035 45.455 0.00 0.00 41.95 2.40
791 799 3.005791 CCAAGGTCCAACCAACAATTCTC 59.994 47.826 0.00 0.00 41.95 2.87
792 800 3.884037 AGGTCCAACCAACAATTCTCT 57.116 42.857 0.00 0.00 41.95 3.10
793 801 4.184649 AGGTCCAACCAACAATTCTCTT 57.815 40.909 0.00 0.00 41.95 2.85
794 802 3.891366 AGGTCCAACCAACAATTCTCTTG 59.109 43.478 0.00 0.00 41.95 3.02
795 803 3.636764 GGTCCAACCAACAATTCTCTTGT 59.363 43.478 0.00 0.00 38.42 3.16
796 804 4.499696 GGTCCAACCAACAATTCTCTTGTG 60.500 45.833 0.00 0.00 38.42 3.33
797 805 3.068024 TCCAACCAACAATTCTCTTGTGC 59.932 43.478 0.00 0.00 32.22 4.57
798 806 3.044986 CAACCAACAATTCTCTTGTGCG 58.955 45.455 0.00 0.00 32.22 5.34
799 807 2.297701 ACCAACAATTCTCTTGTGCGT 58.702 42.857 0.00 0.00 32.22 5.24
800 808 3.472652 ACCAACAATTCTCTTGTGCGTA 58.527 40.909 0.00 0.00 32.22 4.42
801 809 3.498397 ACCAACAATTCTCTTGTGCGTAG 59.502 43.478 0.00 0.00 32.22 3.51
802 810 3.120199 CCAACAATTCTCTTGTGCGTAGG 60.120 47.826 0.00 0.00 32.22 3.18
803 811 2.699954 ACAATTCTCTTGTGCGTAGGG 58.300 47.619 0.00 0.00 0.00 3.53
804 812 2.009774 CAATTCTCTTGTGCGTAGGGG 58.990 52.381 0.00 0.00 0.00 4.79
805 813 0.541863 ATTCTCTTGTGCGTAGGGGG 59.458 55.000 0.00 0.00 0.00 5.40
806 814 0.834687 TTCTCTTGTGCGTAGGGGGT 60.835 55.000 0.00 0.00 0.00 4.95
807 815 1.079127 CTCTTGTGCGTAGGGGGTG 60.079 63.158 0.00 0.00 0.00 4.61
808 816 1.534476 TCTTGTGCGTAGGGGGTGA 60.534 57.895 0.00 0.00 0.00 4.02
809 817 0.907704 TCTTGTGCGTAGGGGGTGAT 60.908 55.000 0.00 0.00 0.00 3.06
810 818 0.744414 CTTGTGCGTAGGGGGTGATG 60.744 60.000 0.00 0.00 0.00 3.07
811 819 1.195442 TTGTGCGTAGGGGGTGATGA 61.195 55.000 0.00 0.00 0.00 2.92
812 820 0.980754 TGTGCGTAGGGGGTGATGAT 60.981 55.000 0.00 0.00 0.00 2.45
813 821 0.532862 GTGCGTAGGGGGTGATGATG 60.533 60.000 0.00 0.00 0.00 3.07
814 822 0.980754 TGCGTAGGGGGTGATGATGT 60.981 55.000 0.00 0.00 0.00 3.06
815 823 0.249911 GCGTAGGGGGTGATGATGTC 60.250 60.000 0.00 0.00 0.00 3.06
816 824 0.032130 CGTAGGGGGTGATGATGTCG 59.968 60.000 0.00 0.00 0.00 4.35
817 825 1.120530 GTAGGGGGTGATGATGTCGT 58.879 55.000 0.00 0.00 0.00 4.34
818 826 1.068741 GTAGGGGGTGATGATGTCGTC 59.931 57.143 0.00 0.00 0.00 4.20
819 827 1.146263 GGGGGTGATGATGTCGTCC 59.854 63.158 0.10 0.00 0.00 4.79
820 828 1.227263 GGGGTGATGATGTCGTCCG 60.227 63.158 0.10 0.00 0.00 4.79
821 829 1.227263 GGGTGATGATGTCGTCCGG 60.227 63.158 0.00 0.00 0.00 5.14
822 830 1.515954 GGTGATGATGTCGTCCGGT 59.484 57.895 0.00 0.00 0.00 5.28
823 831 0.806102 GGTGATGATGTCGTCCGGTG 60.806 60.000 0.00 0.00 0.00 4.94
824 832 0.806102 GTGATGATGTCGTCCGGTGG 60.806 60.000 0.00 0.00 0.00 4.61
825 833 1.883084 GATGATGTCGTCCGGTGGC 60.883 63.158 0.00 0.00 0.00 5.01
826 834 3.385749 ATGATGTCGTCCGGTGGCC 62.386 63.158 0.00 0.00 0.00 5.36
827 835 4.077184 GATGTCGTCCGGTGGCCA 62.077 66.667 0.00 0.00 0.00 5.36
828 836 3.385749 GATGTCGTCCGGTGGCCAT 62.386 63.158 9.72 0.00 0.00 4.40
829 837 3.680620 ATGTCGTCCGGTGGCCATG 62.681 63.158 9.72 4.53 0.00 3.66
830 838 4.388499 GTCGTCCGGTGGCCATGT 62.388 66.667 9.72 0.00 0.00 3.21
831 839 2.680707 TCGTCCGGTGGCCATGTA 60.681 61.111 9.72 0.00 0.00 2.29
832 840 2.266372 CGTCCGGTGGCCATGTAA 59.734 61.111 9.72 0.00 0.00 2.41
833 841 1.813753 CGTCCGGTGGCCATGTAAG 60.814 63.158 9.72 0.00 0.00 2.34
834 842 1.451387 GTCCGGTGGCCATGTAAGG 60.451 63.158 9.72 8.68 0.00 2.69
835 843 1.921346 TCCGGTGGCCATGTAAGGT 60.921 57.895 9.72 0.00 0.00 3.50
836 844 1.748879 CCGGTGGCCATGTAAGGTG 60.749 63.158 9.72 0.00 0.00 4.00
837 845 1.298340 CGGTGGCCATGTAAGGTGA 59.702 57.895 9.72 0.00 0.00 4.02
838 846 1.024579 CGGTGGCCATGTAAGGTGAC 61.025 60.000 9.72 0.00 0.00 3.67
839 847 0.037590 GGTGGCCATGTAAGGTGACA 59.962 55.000 9.72 0.00 0.00 3.58
840 848 1.453155 GTGGCCATGTAAGGTGACAG 58.547 55.000 9.72 0.00 31.51 3.51
841 849 0.322456 TGGCCATGTAAGGTGACAGC 60.322 55.000 0.00 0.00 31.51 4.40
842 850 0.035056 GGCCATGTAAGGTGACAGCT 60.035 55.000 0.07 0.07 31.51 4.24
843 851 1.614317 GGCCATGTAAGGTGACAGCTT 60.614 52.381 22.45 22.45 39.52 3.74
844 852 2.355716 GGCCATGTAAGGTGACAGCTTA 60.356 50.000 20.44 20.44 37.16 3.09
845 853 2.939103 GCCATGTAAGGTGACAGCTTAG 59.061 50.000 23.84 14.74 38.66 2.18
846 854 3.369471 GCCATGTAAGGTGACAGCTTAGA 60.369 47.826 23.84 22.88 38.66 2.10
847 855 4.832248 CCATGTAAGGTGACAGCTTAGAA 58.168 43.478 23.84 16.65 38.66 2.10
848 856 4.631813 CCATGTAAGGTGACAGCTTAGAAC 59.368 45.833 23.84 16.80 38.66 3.01
849 857 5.482908 CATGTAAGGTGACAGCTTAGAACT 58.517 41.667 23.84 9.09 38.66 3.01
850 858 4.883083 TGTAAGGTGACAGCTTAGAACTG 58.117 43.478 23.84 0.00 38.66 3.16
851 859 3.409026 AAGGTGACAGCTTAGAACTGG 57.591 47.619 18.03 0.00 39.55 4.00
852 860 1.625818 AGGTGACAGCTTAGAACTGGG 59.374 52.381 0.07 0.00 39.55 4.45
853 861 1.623811 GGTGACAGCTTAGAACTGGGA 59.376 52.381 0.00 0.00 39.55 4.37
854 862 2.038557 GGTGACAGCTTAGAACTGGGAA 59.961 50.000 0.00 0.00 39.55 3.97
855 863 3.307762 GGTGACAGCTTAGAACTGGGAAT 60.308 47.826 0.00 0.00 39.55 3.01
856 864 3.686726 GTGACAGCTTAGAACTGGGAATG 59.313 47.826 0.00 0.00 39.55 2.67
857 865 3.327757 TGACAGCTTAGAACTGGGAATGT 59.672 43.478 0.00 0.00 39.55 2.71
858 866 3.679389 ACAGCTTAGAACTGGGAATGTG 58.321 45.455 0.00 0.00 39.55 3.21
859 867 3.073062 ACAGCTTAGAACTGGGAATGTGT 59.927 43.478 0.00 0.00 39.55 3.72
860 868 3.438087 CAGCTTAGAACTGGGAATGTGTG 59.562 47.826 0.00 0.00 0.00 3.82
861 869 2.162408 GCTTAGAACTGGGAATGTGTGC 59.838 50.000 0.00 0.00 0.00 4.57
862 870 2.093306 TAGAACTGGGAATGTGTGCG 57.907 50.000 0.00 0.00 0.00 5.34
863 871 0.108585 AGAACTGGGAATGTGTGCGT 59.891 50.000 0.00 0.00 0.00 5.24
864 872 0.238289 GAACTGGGAATGTGTGCGTG 59.762 55.000 0.00 0.00 0.00 5.34
865 873 0.179032 AACTGGGAATGTGTGCGTGA 60.179 50.000 0.00 0.00 0.00 4.35
866 874 0.179032 ACTGGGAATGTGTGCGTGAA 60.179 50.000 0.00 0.00 0.00 3.18
867 875 0.238289 CTGGGAATGTGTGCGTGAAC 59.762 55.000 0.00 0.00 0.00 3.18
868 876 0.179032 TGGGAATGTGTGCGTGAACT 60.179 50.000 0.00 0.00 0.00 3.01
869 877 1.070914 TGGGAATGTGTGCGTGAACTA 59.929 47.619 0.00 0.00 0.00 2.24
870 878 2.147958 GGGAATGTGTGCGTGAACTAA 58.852 47.619 0.00 0.00 0.00 2.24
871 879 2.550606 GGGAATGTGTGCGTGAACTAAA 59.449 45.455 0.00 0.00 0.00 1.85
872 880 3.551551 GGAATGTGTGCGTGAACTAAAC 58.448 45.455 0.00 0.00 0.00 2.01
873 881 3.002862 GGAATGTGTGCGTGAACTAAACA 59.997 43.478 0.00 0.00 0.00 2.83
874 882 4.320202 GGAATGTGTGCGTGAACTAAACAT 60.320 41.667 0.00 0.00 0.00 2.71
875 883 5.106869 GGAATGTGTGCGTGAACTAAACATA 60.107 40.000 0.00 0.00 0.00 2.29
876 884 4.983215 TGTGTGCGTGAACTAAACATAG 57.017 40.909 0.00 0.00 0.00 2.23
896 904 2.698797 AGGAAGAGACCGAGTGTTTGAA 59.301 45.455 0.00 0.00 34.73 2.69
927 935 2.207924 ACTTCAGGGGTTCGCGTCT 61.208 57.895 5.77 0.00 0.00 4.18
996 1005 4.400120 ACTTAATCCCGTGGCTAAAAACA 58.600 39.130 0.00 0.00 0.00 2.83
1008 1017 4.220821 TGGCTAAAAACAACCAAGTTGACA 59.779 37.500 14.05 0.00 45.28 3.58
1018 1027 1.197721 CCAAGTTGACAGAATGGTCGC 59.802 52.381 3.87 0.00 43.62 5.19
1054 1063 1.817099 CGATTCAGACAGCAGGGGC 60.817 63.158 0.00 0.00 41.61 5.80
1235 1281 0.461135 CTCTGCTCTCCTCTGCTTCC 59.539 60.000 0.00 0.00 0.00 3.46
1247 1293 2.739379 CTCTGCTTCCGTTTCTTCTTCC 59.261 50.000 0.00 0.00 0.00 3.46
1248 1294 1.461127 CTGCTTCCGTTTCTTCTTCCG 59.539 52.381 0.00 0.00 0.00 4.30
1249 1295 1.202604 TGCTTCCGTTTCTTCTTCCGT 60.203 47.619 0.00 0.00 0.00 4.69
1337 1388 2.029020 AGTACATGAGCGAGTTCAGCAA 60.029 45.455 0.00 0.00 37.01 3.91
1369 1420 5.168569 TGGAGTATTTTGTAAGTCAGCTCG 58.831 41.667 0.00 0.00 0.00 5.03
1535 1602 8.007742 ACTATGATAGACCCTAGTTTCTGTGAT 58.992 37.037 6.45 0.00 0.00 3.06
1549 1616 4.897509 TCTGTGATCTTGTGACTGGATT 57.102 40.909 0.00 0.00 0.00 3.01
1605 1672 3.140623 GGCAAGTTTGTGGCATTTGAAT 58.859 40.909 0.00 0.00 43.33 2.57
1672 1739 5.772393 ATGGACCAAGTAGTTGTGGATTA 57.228 39.130 9.42 0.00 38.36 1.75
1687 1754 7.868415 AGTTGTGGATTAGATTAGCTCGATTAC 59.132 37.037 0.00 0.00 0.00 1.89
1714 1781 6.106673 GCTATTTAGTGGAAACAGAGTAGCA 58.893 40.000 0.00 0.00 44.46 3.49
1777 1849 9.582648 AAAACATTGGTAGGTCTAAATACTGTT 57.417 29.630 0.00 0.00 0.00 3.16
1813 1894 6.540189 AGAGCACTGGAAACATATTGATGTAC 59.460 38.462 0.00 0.00 45.93 2.90
2116 2218 4.805609 GCAGAAGGAGTTTGATTCTCTGGT 60.806 45.833 0.00 0.00 30.99 4.00
2205 2307 1.913778 TGACATGGATTGCACAAGCT 58.086 45.000 0.00 0.00 42.74 3.74
2209 2311 2.025981 ACATGGATTGCACAAGCTAGGA 60.026 45.455 3.73 0.00 42.74 2.94
2256 2358 1.584380 GCAACTTGAGGAGCAGGCAG 61.584 60.000 0.00 0.00 0.00 4.85
2638 2759 5.665916 ATGGGTTCAGATCATTTTGGTTC 57.334 39.130 0.00 0.00 0.00 3.62
2670 2791 2.012673 GCTGTTTGCCCTGATCTGTAG 58.987 52.381 0.00 0.00 35.15 2.74
2671 2792 2.636830 CTGTTTGCCCTGATCTGTAGG 58.363 52.381 0.00 0.00 35.01 3.18
2681 2802 3.496870 CCTGATCTGTAGGGCCCAAATAC 60.497 52.174 27.56 18.53 0.00 1.89
2710 2831 1.002430 TGCTGAGAACTGGTGCTAAGG 59.998 52.381 0.00 0.00 0.00 2.69
2978 3109 4.077300 TCTCACTGAGATTGCAAACACT 57.923 40.909 1.71 3.36 33.35 3.55
2996 3127 5.220710 ACACTCTGCTAAACTGACAGAAT 57.779 39.130 10.08 0.00 39.79 2.40
3003 3134 7.861630 TCTGCTAAACTGACAGAATTAAACAC 58.138 34.615 10.08 0.37 37.49 3.32
3023 3154 6.974932 ACACACATAACTGAATCTCACATC 57.025 37.500 0.00 0.00 0.00 3.06
3114 3247 3.222354 GACCTGACCGTCGCACCTT 62.222 63.158 0.00 0.00 0.00 3.50
3176 3309 2.159240 TCTTTGTCTCCATCGATGACGG 60.159 50.000 26.86 14.93 40.21 4.79
3350 3483 3.863407 GAGTCCGCCTCCTTCATTT 57.137 52.632 0.00 0.00 33.79 2.32
3379 3512 0.240145 GCATGTCGATGGGCATGATG 59.760 55.000 24.37 1.76 43.60 3.07
3407 3540 2.902343 GGGTTCCATAGCGCTGGC 60.902 66.667 22.90 2.29 36.16 4.85
3426 3559 2.470362 CCATGCGCTGCTTCTCCTG 61.470 63.158 9.73 0.00 0.00 3.86
3442 3575 1.374758 CTGAGCCGTCGCCTTCTTT 60.375 57.895 0.00 0.00 34.57 2.52
3477 3610 1.153289 CATCCACGAGCCCTTCTGG 60.153 63.158 0.00 0.00 37.09 3.86
3491 3624 4.559862 CCTTCTGGGTTGTTGTATCTCT 57.440 45.455 0.00 0.00 0.00 3.10
3511 3644 5.046376 TCTCTTGGCAATCTTCATGTAGTCA 60.046 40.000 0.00 0.00 0.00 3.41
3561 3695 0.606130 CCAAAAAGCATGGCAACCCC 60.606 55.000 0.00 0.00 0.00 4.95
3571 3705 4.354162 GCAACCCCGCCCTTACCA 62.354 66.667 0.00 0.00 0.00 3.25
3576 3710 4.796495 CCCGCCCTTACCAGTGGC 62.796 72.222 9.78 0.00 41.85 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 2.769652 GATGGACAGGGTTGGCAGCA 62.770 60.000 3.14 0.00 32.23 4.41
424 426 1.843368 TACAGAACCCAGTCCTACGG 58.157 55.000 0.00 0.00 0.00 4.02
498 500 4.231439 GGGGTGCGACCGGTATCC 62.231 72.222 7.34 0.41 39.83 2.59
546 554 3.376859 TGGTGCACCGATAATTGATTGAC 59.623 43.478 30.07 1.49 39.43 3.18
561 569 4.697352 ACTGTAGAGAATGATTTGGTGCAC 59.303 41.667 8.80 8.80 0.00 4.57
589 597 0.895530 ATCGAGATGTCACCAACCGT 59.104 50.000 0.00 0.00 0.00 4.83
590 598 1.135112 TCATCGAGATGTCACCAACCG 60.135 52.381 12.22 0.00 39.72 4.44
591 599 2.672961 TCATCGAGATGTCACCAACC 57.327 50.000 12.22 0.00 39.72 3.77
592 600 4.631377 TCATTTCATCGAGATGTCACCAAC 59.369 41.667 12.22 0.00 39.72 3.77
593 601 4.831107 TCATTTCATCGAGATGTCACCAA 58.169 39.130 12.22 0.00 39.72 3.67
594 602 4.470334 TCATTTCATCGAGATGTCACCA 57.530 40.909 12.22 0.00 39.72 4.17
595 603 5.636965 CCTATCATTTCATCGAGATGTCACC 59.363 44.000 12.22 0.00 39.72 4.02
596 604 6.145209 CACCTATCATTTCATCGAGATGTCAC 59.855 42.308 12.22 0.00 39.72 3.67
597 605 6.218746 CACCTATCATTTCATCGAGATGTCA 58.781 40.000 12.22 2.03 39.72 3.58
598 606 5.119898 GCACCTATCATTTCATCGAGATGTC 59.880 44.000 12.22 0.00 39.72 3.06
599 607 4.993584 GCACCTATCATTTCATCGAGATGT 59.006 41.667 12.22 0.00 39.72 3.06
600 608 4.091075 CGCACCTATCATTTCATCGAGATG 59.909 45.833 6.74 6.74 40.09 2.90
601 609 4.021981 TCGCACCTATCATTTCATCGAGAT 60.022 41.667 0.00 0.00 0.00 2.75
602 610 3.317993 TCGCACCTATCATTTCATCGAGA 59.682 43.478 0.00 0.00 0.00 4.04
603 611 3.642705 TCGCACCTATCATTTCATCGAG 58.357 45.455 0.00 0.00 0.00 4.04
604 612 3.068165 ACTCGCACCTATCATTTCATCGA 59.932 43.478 0.00 0.00 0.00 3.59
605 613 3.384668 ACTCGCACCTATCATTTCATCG 58.615 45.455 0.00 0.00 0.00 3.84
606 614 7.293745 CAATTACTCGCACCTATCATTTCATC 58.706 38.462 0.00 0.00 0.00 2.92
607 615 6.293626 GCAATTACTCGCACCTATCATTTCAT 60.294 38.462 0.00 0.00 0.00 2.57
608 616 5.007626 GCAATTACTCGCACCTATCATTTCA 59.992 40.000 0.00 0.00 0.00 2.69
609 617 5.007626 TGCAATTACTCGCACCTATCATTTC 59.992 40.000 0.00 0.00 31.95 2.17
610 618 4.881273 TGCAATTACTCGCACCTATCATTT 59.119 37.500 0.00 0.00 31.95 2.32
611 619 4.450976 TGCAATTACTCGCACCTATCATT 58.549 39.130 0.00 0.00 31.95 2.57
612 620 4.071961 TGCAATTACTCGCACCTATCAT 57.928 40.909 0.00 0.00 31.95 2.45
613 621 3.535280 TGCAATTACTCGCACCTATCA 57.465 42.857 0.00 0.00 31.95 2.15
614 622 4.875544 TTTGCAATTACTCGCACCTATC 57.124 40.909 0.00 0.00 38.00 2.08
615 623 5.835113 AATTTGCAATTACTCGCACCTAT 57.165 34.783 0.00 0.00 38.00 2.57
616 624 5.637006 AAATTTGCAATTACTCGCACCTA 57.363 34.783 0.00 0.00 38.00 3.08
617 625 4.519540 AAATTTGCAATTACTCGCACCT 57.480 36.364 0.00 0.00 38.00 4.00
618 626 4.923281 AGAAAATTTGCAATTACTCGCACC 59.077 37.500 0.00 0.00 38.00 5.01
619 627 5.629020 TGAGAAAATTTGCAATTACTCGCAC 59.371 36.000 0.00 0.00 38.00 5.34
620 628 5.629020 GTGAGAAAATTTGCAATTACTCGCA 59.371 36.000 19.49 13.38 34.94 5.10
621 629 5.858581 AGTGAGAAAATTTGCAATTACTCGC 59.141 36.000 18.16 18.16 35.01 5.03
622 630 7.059945 GTCAGTGAGAAAATTTGCAATTACTCG 59.940 37.037 0.00 0.00 0.00 4.18
623 631 7.059945 CGTCAGTGAGAAAATTTGCAATTACTC 59.940 37.037 0.00 7.82 0.00 2.59
624 632 6.857964 CGTCAGTGAGAAAATTTGCAATTACT 59.142 34.615 0.00 0.00 0.00 2.24
625 633 6.855914 TCGTCAGTGAGAAAATTTGCAATTAC 59.144 34.615 0.00 0.00 0.00 1.89
626 634 6.855914 GTCGTCAGTGAGAAAATTTGCAATTA 59.144 34.615 0.00 0.00 0.00 1.40
627 635 5.687285 GTCGTCAGTGAGAAAATTTGCAATT 59.313 36.000 0.00 0.00 0.00 2.32
628 636 5.215160 GTCGTCAGTGAGAAAATTTGCAAT 58.785 37.500 0.00 0.00 0.00 3.56
629 637 4.095632 TGTCGTCAGTGAGAAAATTTGCAA 59.904 37.500 0.00 0.00 0.00 4.08
630 638 3.625313 TGTCGTCAGTGAGAAAATTTGCA 59.375 39.130 0.00 0.00 0.00 4.08
631 639 4.209452 TGTCGTCAGTGAGAAAATTTGC 57.791 40.909 0.00 0.00 0.00 3.68
632 640 6.258160 ACTTTGTCGTCAGTGAGAAAATTTG 58.742 36.000 0.00 0.00 31.67 2.32
633 641 6.436843 ACTTTGTCGTCAGTGAGAAAATTT 57.563 33.333 0.00 0.00 31.67 1.82
634 642 6.202954 CCTACTTTGTCGTCAGTGAGAAAATT 59.797 38.462 0.00 0.00 31.67 1.82
635 643 5.696724 CCTACTTTGTCGTCAGTGAGAAAAT 59.303 40.000 0.00 0.00 31.67 1.82
636 644 5.047847 CCTACTTTGTCGTCAGTGAGAAAA 58.952 41.667 0.00 0.00 31.67 2.29
637 645 4.617959 CCTACTTTGTCGTCAGTGAGAAA 58.382 43.478 0.00 0.00 31.28 2.52
638 646 3.552273 GCCTACTTTGTCGTCAGTGAGAA 60.552 47.826 0.00 0.00 0.00 2.87
639 647 2.030185 GCCTACTTTGTCGTCAGTGAGA 60.030 50.000 0.00 0.00 0.00 3.27
640 648 2.029828 AGCCTACTTTGTCGTCAGTGAG 60.030 50.000 0.00 0.00 0.00 3.51
641 649 1.961394 AGCCTACTTTGTCGTCAGTGA 59.039 47.619 0.00 0.00 0.00 3.41
642 650 2.440539 AGCCTACTTTGTCGTCAGTG 57.559 50.000 0.00 0.00 0.00 3.66
643 651 2.102588 ACAAGCCTACTTTGTCGTCAGT 59.897 45.455 0.00 0.00 32.29 3.41
644 652 2.476619 CACAAGCCTACTTTGTCGTCAG 59.523 50.000 0.00 0.00 32.29 3.51
645 653 2.101750 TCACAAGCCTACTTTGTCGTCA 59.898 45.455 0.00 0.00 32.29 4.35
646 654 2.475487 GTCACAAGCCTACTTTGTCGTC 59.525 50.000 0.00 0.00 32.29 4.20
647 655 2.159014 TGTCACAAGCCTACTTTGTCGT 60.159 45.455 0.00 0.00 32.29 4.34
648 656 2.476619 CTGTCACAAGCCTACTTTGTCG 59.523 50.000 0.00 0.00 32.29 4.35
649 657 3.467803 ACTGTCACAAGCCTACTTTGTC 58.532 45.455 0.00 0.00 32.29 3.18
650 658 3.560636 ACTGTCACAAGCCTACTTTGT 57.439 42.857 0.00 0.00 32.29 2.83
651 659 4.083802 GCTAACTGTCACAAGCCTACTTTG 60.084 45.833 0.00 0.00 32.29 2.77
652 660 4.065789 GCTAACTGTCACAAGCCTACTTT 58.934 43.478 0.00 0.00 32.29 2.66
653 661 3.071023 TGCTAACTGTCACAAGCCTACTT 59.929 43.478 0.00 0.00 36.19 2.24
654 662 2.632996 TGCTAACTGTCACAAGCCTACT 59.367 45.455 0.00 0.00 33.99 2.57
655 663 3.040147 TGCTAACTGTCACAAGCCTAC 57.960 47.619 0.00 0.00 33.99 3.18
656 664 3.981071 ATGCTAACTGTCACAAGCCTA 57.019 42.857 0.00 0.00 33.99 3.93
657 665 2.867109 ATGCTAACTGTCACAAGCCT 57.133 45.000 0.00 0.00 33.99 4.58
658 666 3.861840 TCTATGCTAACTGTCACAAGCC 58.138 45.455 0.00 0.00 33.99 4.35
659 667 5.582269 TCAATCTATGCTAACTGTCACAAGC 59.418 40.000 0.00 0.00 35.51 4.01
660 668 7.601073 TTCAATCTATGCTAACTGTCACAAG 57.399 36.000 0.00 0.00 0.00 3.16
661 669 7.066163 CCATTCAATCTATGCTAACTGTCACAA 59.934 37.037 0.00 0.00 0.00 3.33
662 670 6.539826 CCATTCAATCTATGCTAACTGTCACA 59.460 38.462 0.00 0.00 0.00 3.58
663 671 6.512415 GCCATTCAATCTATGCTAACTGTCAC 60.512 42.308 0.00 0.00 0.00 3.67
664 672 5.528690 GCCATTCAATCTATGCTAACTGTCA 59.471 40.000 0.00 0.00 0.00 3.58
665 673 5.528690 TGCCATTCAATCTATGCTAACTGTC 59.471 40.000 0.00 0.00 0.00 3.51
666 674 5.439721 TGCCATTCAATCTATGCTAACTGT 58.560 37.500 0.00 0.00 0.00 3.55
667 675 6.381481 TTGCCATTCAATCTATGCTAACTG 57.619 37.500 0.00 0.00 0.00 3.16
668 676 7.408756 TTTTGCCATTCAATCTATGCTAACT 57.591 32.000 0.00 0.00 34.12 2.24
669 677 8.652810 AATTTTGCCATTCAATCTATGCTAAC 57.347 30.769 0.00 0.00 34.12 2.34
670 678 7.648908 CGAATTTTGCCATTCAATCTATGCTAA 59.351 33.333 0.00 0.00 33.35 3.09
671 679 7.140705 CGAATTTTGCCATTCAATCTATGCTA 58.859 34.615 0.00 0.00 33.35 3.49
672 680 5.981315 CGAATTTTGCCATTCAATCTATGCT 59.019 36.000 0.00 0.00 33.35 3.79
673 681 5.750067 ACGAATTTTGCCATTCAATCTATGC 59.250 36.000 0.00 0.00 33.35 3.14
674 682 6.141211 CGACGAATTTTGCCATTCAATCTATG 59.859 38.462 0.00 0.00 33.35 2.23
675 683 6.201517 CGACGAATTTTGCCATTCAATCTAT 58.798 36.000 0.00 0.00 33.35 1.98
676 684 5.568482 CGACGAATTTTGCCATTCAATCTA 58.432 37.500 0.00 0.00 33.35 1.98
677 685 4.414852 CGACGAATTTTGCCATTCAATCT 58.585 39.130 0.00 0.00 33.35 2.40
678 686 3.000773 GCGACGAATTTTGCCATTCAATC 60.001 43.478 0.00 0.00 33.35 2.67
679 687 2.923020 GCGACGAATTTTGCCATTCAAT 59.077 40.909 0.00 0.00 33.35 2.57
680 688 2.323959 GCGACGAATTTTGCCATTCAA 58.676 42.857 0.00 0.00 33.35 2.69
681 689 1.402194 GGCGACGAATTTTGCCATTCA 60.402 47.619 0.00 0.00 44.69 2.57
682 690 1.268265 GGCGACGAATTTTGCCATTC 58.732 50.000 0.00 0.00 44.69 2.67
683 691 0.108851 GGGCGACGAATTTTGCCATT 60.109 50.000 10.05 0.00 46.90 3.16
684 692 1.247419 TGGGCGACGAATTTTGCCAT 61.247 50.000 10.05 0.00 46.90 4.40
685 693 1.247419 ATGGGCGACGAATTTTGCCA 61.247 50.000 10.05 0.00 46.90 4.92
686 694 0.801836 CATGGGCGACGAATTTTGCC 60.802 55.000 0.00 0.21 44.59 4.52
687 695 0.170116 TCATGGGCGACGAATTTTGC 59.830 50.000 0.00 0.00 0.00 3.68
688 696 2.849880 ATCATGGGCGACGAATTTTG 57.150 45.000 0.00 0.00 0.00 2.44
689 697 5.937540 TCATATATCATGGGCGACGAATTTT 59.062 36.000 0.00 0.00 0.00 1.82
690 698 5.487433 TCATATATCATGGGCGACGAATTT 58.513 37.500 0.00 0.00 0.00 1.82
691 699 5.084818 TCATATATCATGGGCGACGAATT 57.915 39.130 0.00 0.00 0.00 2.17
692 700 4.736126 TCATATATCATGGGCGACGAAT 57.264 40.909 0.00 0.00 0.00 3.34
693 701 4.736126 ATCATATATCATGGGCGACGAA 57.264 40.909 0.00 0.00 0.00 3.85
694 702 4.736126 AATCATATATCATGGGCGACGA 57.264 40.909 0.00 0.00 0.00 4.20
695 703 4.869861 TCAAATCATATATCATGGGCGACG 59.130 41.667 0.00 0.00 0.00 5.12
696 704 5.220739 GCTCAAATCATATATCATGGGCGAC 60.221 44.000 0.00 0.00 0.00 5.19
697 705 4.877823 GCTCAAATCATATATCATGGGCGA 59.122 41.667 0.00 0.00 0.00 5.54
698 706 4.880120 AGCTCAAATCATATATCATGGGCG 59.120 41.667 0.00 0.00 39.22 6.13
699 707 6.770746 AAGCTCAAATCATATATCATGGGC 57.229 37.500 0.00 0.00 34.54 5.36
723 731 6.918892 TGAAGAATCAACTCAGACGAAAAA 57.081 33.333 0.00 0.00 30.99 1.94
724 732 6.483307 ACATGAAGAATCAACTCAGACGAAAA 59.517 34.615 0.00 0.00 39.49 2.29
725 733 5.991606 ACATGAAGAATCAACTCAGACGAAA 59.008 36.000 0.00 0.00 39.49 3.46
726 734 5.541845 ACATGAAGAATCAACTCAGACGAA 58.458 37.500 0.00 0.00 39.49 3.85
727 735 5.139435 ACATGAAGAATCAACTCAGACGA 57.861 39.130 0.00 0.00 39.49 4.20
728 736 4.031089 CGACATGAAGAATCAACTCAGACG 59.969 45.833 0.00 0.00 39.49 4.18
729 737 5.164233 TCGACATGAAGAATCAACTCAGAC 58.836 41.667 0.00 0.00 39.49 3.51
730 738 5.391312 TCGACATGAAGAATCAACTCAGA 57.609 39.130 0.00 0.00 39.49 3.27
731 739 5.809051 TCATCGACATGAAGAATCAACTCAG 59.191 40.000 0.00 0.00 39.49 3.35
732 740 5.723295 TCATCGACATGAAGAATCAACTCA 58.277 37.500 0.00 0.00 39.49 3.41
733 741 5.233902 CCTCATCGACATGAAGAATCAACTC 59.766 44.000 0.00 0.00 38.63 3.01
734 742 5.114780 CCTCATCGACATGAAGAATCAACT 58.885 41.667 0.00 0.00 38.63 3.16
735 743 4.872691 ACCTCATCGACATGAAGAATCAAC 59.127 41.667 0.00 0.00 38.63 3.18
736 744 5.089970 ACCTCATCGACATGAAGAATCAA 57.910 39.130 0.00 0.00 38.63 2.57
737 745 4.442052 GGACCTCATCGACATGAAGAATCA 60.442 45.833 0.00 0.00 38.63 2.57
738 746 4.054671 GGACCTCATCGACATGAAGAATC 58.945 47.826 0.00 0.00 38.63 2.52
739 747 3.181461 GGGACCTCATCGACATGAAGAAT 60.181 47.826 0.00 0.00 38.63 2.40
740 748 2.168521 GGGACCTCATCGACATGAAGAA 59.831 50.000 0.00 0.00 38.63 2.52
741 749 1.757118 GGGACCTCATCGACATGAAGA 59.243 52.381 0.00 0.00 38.63 2.87
742 750 1.536922 CGGGACCTCATCGACATGAAG 60.537 57.143 0.00 0.00 38.63 3.02
743 751 0.459899 CGGGACCTCATCGACATGAA 59.540 55.000 0.00 0.00 38.63 2.57
744 752 0.395173 TCGGGACCTCATCGACATGA 60.395 55.000 0.00 0.00 36.62 3.07
745 753 0.676184 ATCGGGACCTCATCGACATG 59.324 55.000 0.00 0.00 35.70 3.21
746 754 0.676184 CATCGGGACCTCATCGACAT 59.324 55.000 0.00 0.00 35.70 3.06
747 755 1.391933 CCATCGGGACCTCATCGACA 61.392 60.000 0.00 0.00 35.70 4.35
748 756 1.364171 CCATCGGGACCTCATCGAC 59.636 63.158 0.00 0.00 35.70 4.20
749 757 2.498941 GCCATCGGGACCTCATCGA 61.499 63.158 0.00 0.00 35.59 3.59
750 758 2.029666 GCCATCGGGACCTCATCG 59.970 66.667 0.00 0.00 35.59 3.84
751 759 1.369321 GAGCCATCGGGACCTCATC 59.631 63.158 0.00 0.00 35.59 2.92
752 760 2.143419 GGAGCCATCGGGACCTCAT 61.143 63.158 0.00 0.00 35.59 2.90
753 761 2.764128 GGAGCCATCGGGACCTCA 60.764 66.667 0.00 0.00 35.59 3.86
754 762 2.317149 CTTGGAGCCATCGGGACCTC 62.317 65.000 0.00 0.00 35.59 3.85
755 763 2.285368 TTGGAGCCATCGGGACCT 60.285 61.111 0.00 0.00 35.59 3.85
756 764 2.190578 CTTGGAGCCATCGGGACC 59.809 66.667 0.00 0.00 35.59 4.46
757 765 2.190578 CCTTGGAGCCATCGGGAC 59.809 66.667 0.00 0.00 35.59 4.46
758 766 2.285368 ACCTTGGAGCCATCGGGA 60.285 61.111 9.34 0.00 35.59 5.14
759 767 2.190578 GACCTTGGAGCCATCGGG 59.809 66.667 9.34 6.33 37.18 5.14
760 768 2.190578 GGACCTTGGAGCCATCGG 59.809 66.667 0.00 0.00 0.00 4.18
761 769 1.026718 GTTGGACCTTGGAGCCATCG 61.027 60.000 6.79 0.00 0.00 3.84
762 770 0.681243 GGTTGGACCTTGGAGCCATC 60.681 60.000 6.79 6.42 34.73 3.51
763 771 1.384191 GGTTGGACCTTGGAGCCAT 59.616 57.895 6.79 0.00 34.73 4.40
764 772 1.650242 TTGGTTGGACCTTGGAGCCA 61.650 55.000 0.00 0.00 39.58 4.75
765 773 1.152830 TTGGTTGGACCTTGGAGCC 59.847 57.895 0.00 0.00 39.58 4.70
766 774 0.467290 TGTTGGTTGGACCTTGGAGC 60.467 55.000 0.00 0.00 39.58 4.70
767 775 2.065899 TTGTTGGTTGGACCTTGGAG 57.934 50.000 0.00 0.00 39.58 3.86
768 776 2.765689 ATTGTTGGTTGGACCTTGGA 57.234 45.000 0.00 0.00 39.58 3.53
769 777 2.965147 AGAATTGTTGGTTGGACCTTGG 59.035 45.455 0.00 0.00 39.58 3.61
770 778 3.891366 AGAGAATTGTTGGTTGGACCTTG 59.109 43.478 0.00 0.00 39.58 3.61
771 779 4.184649 AGAGAATTGTTGGTTGGACCTT 57.815 40.909 0.00 0.00 39.58 3.50
772 780 3.884037 AGAGAATTGTTGGTTGGACCT 57.116 42.857 0.00 0.00 39.58 3.85
773 781 3.636764 ACAAGAGAATTGTTGGTTGGACC 59.363 43.478 0.00 0.00 39.22 4.46
774 782 4.610945 CACAAGAGAATTGTTGGTTGGAC 58.389 43.478 0.00 0.00 32.16 4.02
775 783 3.068024 GCACAAGAGAATTGTTGGTTGGA 59.932 43.478 0.00 0.00 32.16 3.53
776 784 3.383761 GCACAAGAGAATTGTTGGTTGG 58.616 45.455 0.00 0.00 32.16 3.77
777 785 3.044986 CGCACAAGAGAATTGTTGGTTG 58.955 45.455 0.00 0.00 32.16 3.77
778 786 2.687935 ACGCACAAGAGAATTGTTGGTT 59.312 40.909 0.00 0.00 32.16 3.67
779 787 2.297701 ACGCACAAGAGAATTGTTGGT 58.702 42.857 0.00 0.00 32.16 3.67
780 788 3.120199 CCTACGCACAAGAGAATTGTTGG 60.120 47.826 0.00 0.00 32.16 3.77
781 789 3.120199 CCCTACGCACAAGAGAATTGTTG 60.120 47.826 0.00 0.00 33.99 3.33
782 790 3.074412 CCCTACGCACAAGAGAATTGTT 58.926 45.455 0.00 0.00 0.00 2.83
783 791 2.615493 CCCCTACGCACAAGAGAATTGT 60.615 50.000 0.00 0.00 0.00 2.71
784 792 2.009774 CCCCTACGCACAAGAGAATTG 58.990 52.381 0.00 0.00 0.00 2.32
785 793 1.065418 CCCCCTACGCACAAGAGAATT 60.065 52.381 0.00 0.00 0.00 2.17
786 794 0.541863 CCCCCTACGCACAAGAGAAT 59.458 55.000 0.00 0.00 0.00 2.40
787 795 0.834687 ACCCCCTACGCACAAGAGAA 60.835 55.000 0.00 0.00 0.00 2.87
788 796 1.229082 ACCCCCTACGCACAAGAGA 60.229 57.895 0.00 0.00 0.00 3.10
789 797 1.079127 CACCCCCTACGCACAAGAG 60.079 63.158 0.00 0.00 0.00 2.85
790 798 0.907704 ATCACCCCCTACGCACAAGA 60.908 55.000 0.00 0.00 0.00 3.02
791 799 0.744414 CATCACCCCCTACGCACAAG 60.744 60.000 0.00 0.00 0.00 3.16
792 800 1.195442 TCATCACCCCCTACGCACAA 61.195 55.000 0.00 0.00 0.00 3.33
793 801 0.980754 ATCATCACCCCCTACGCACA 60.981 55.000 0.00 0.00 0.00 4.57
794 802 0.532862 CATCATCACCCCCTACGCAC 60.533 60.000 0.00 0.00 0.00 5.34
795 803 0.980754 ACATCATCACCCCCTACGCA 60.981 55.000 0.00 0.00 0.00 5.24
796 804 0.249911 GACATCATCACCCCCTACGC 60.250 60.000 0.00 0.00 0.00 4.42
797 805 0.032130 CGACATCATCACCCCCTACG 59.968 60.000 0.00 0.00 0.00 3.51
798 806 1.068741 GACGACATCATCACCCCCTAC 59.931 57.143 0.00 0.00 0.00 3.18
799 807 1.410004 GACGACATCATCACCCCCTA 58.590 55.000 0.00 0.00 0.00 3.53
800 808 1.338136 GGACGACATCATCACCCCCT 61.338 60.000 0.00 0.00 0.00 4.79
801 809 1.146263 GGACGACATCATCACCCCC 59.854 63.158 0.00 0.00 0.00 5.40
802 810 1.227263 CGGACGACATCATCACCCC 60.227 63.158 0.00 0.00 0.00 4.95
803 811 1.227263 CCGGACGACATCATCACCC 60.227 63.158 0.00 0.00 0.00 4.61
804 812 0.806102 CACCGGACGACATCATCACC 60.806 60.000 9.46 0.00 0.00 4.02
805 813 0.806102 CCACCGGACGACATCATCAC 60.806 60.000 9.46 0.00 0.00 3.06
806 814 1.515487 CCACCGGACGACATCATCA 59.485 57.895 9.46 0.00 0.00 3.07
807 815 1.883084 GCCACCGGACGACATCATC 60.883 63.158 9.46 0.00 0.00 2.92
808 816 2.186903 GCCACCGGACGACATCAT 59.813 61.111 9.46 0.00 0.00 2.45
809 817 4.077184 GGCCACCGGACGACATCA 62.077 66.667 9.46 0.00 0.00 3.07
810 818 3.385749 ATGGCCACCGGACGACATC 62.386 63.158 8.16 0.00 29.56 3.06
811 819 3.399181 ATGGCCACCGGACGACAT 61.399 61.111 8.16 8.48 29.56 3.06
812 820 4.386951 CATGGCCACCGGACGACA 62.387 66.667 8.16 5.86 29.56 4.35
813 821 2.510064 TTACATGGCCACCGGACGAC 62.510 60.000 8.16 0.00 29.56 4.34
814 822 2.233605 CTTACATGGCCACCGGACGA 62.234 60.000 8.16 0.00 29.56 4.20
815 823 1.813753 CTTACATGGCCACCGGACG 60.814 63.158 8.16 0.00 29.56 4.79
816 824 1.451387 CCTTACATGGCCACCGGAC 60.451 63.158 8.16 0.00 0.00 4.79
817 825 1.921346 ACCTTACATGGCCACCGGA 60.921 57.895 8.16 0.00 0.00 5.14
818 826 1.748879 CACCTTACATGGCCACCGG 60.749 63.158 8.16 6.84 0.00 5.28
819 827 1.024579 GTCACCTTACATGGCCACCG 61.025 60.000 8.16 4.64 0.00 4.94
820 828 0.037590 TGTCACCTTACATGGCCACC 59.962 55.000 8.16 0.00 0.00 4.61
821 829 1.453155 CTGTCACCTTACATGGCCAC 58.547 55.000 8.16 0.00 0.00 5.01
822 830 0.322456 GCTGTCACCTTACATGGCCA 60.322 55.000 8.56 8.56 0.00 5.36
823 831 0.035056 AGCTGTCACCTTACATGGCC 60.035 55.000 0.00 0.00 0.00 5.36
824 832 1.826385 AAGCTGTCACCTTACATGGC 58.174 50.000 0.00 0.00 0.00 4.40
825 833 4.471904 TCTAAGCTGTCACCTTACATGG 57.528 45.455 0.00 0.00 0.00 3.66
826 834 5.349817 CAGTTCTAAGCTGTCACCTTACATG 59.650 44.000 0.00 0.00 0.00 3.21
827 835 5.482908 CAGTTCTAAGCTGTCACCTTACAT 58.517 41.667 0.00 0.00 0.00 2.29
828 836 4.262463 CCAGTTCTAAGCTGTCACCTTACA 60.262 45.833 0.00 0.00 32.41 2.41
829 837 4.246458 CCAGTTCTAAGCTGTCACCTTAC 58.754 47.826 0.00 0.00 32.41 2.34
830 838 3.260884 CCCAGTTCTAAGCTGTCACCTTA 59.739 47.826 0.00 0.00 32.41 2.69
831 839 2.039084 CCCAGTTCTAAGCTGTCACCTT 59.961 50.000 0.00 0.00 32.41 3.50
832 840 1.625818 CCCAGTTCTAAGCTGTCACCT 59.374 52.381 0.00 0.00 32.41 4.00
833 841 1.623811 TCCCAGTTCTAAGCTGTCACC 59.376 52.381 0.00 0.00 32.41 4.02
834 842 3.402628 TTCCCAGTTCTAAGCTGTCAC 57.597 47.619 0.00 0.00 32.41 3.67
835 843 3.327757 ACATTCCCAGTTCTAAGCTGTCA 59.672 43.478 0.00 0.00 32.41 3.58
836 844 3.686726 CACATTCCCAGTTCTAAGCTGTC 59.313 47.826 0.00 0.00 32.41 3.51
837 845 3.073062 ACACATTCCCAGTTCTAAGCTGT 59.927 43.478 0.00 0.00 32.41 4.40
838 846 3.438087 CACACATTCCCAGTTCTAAGCTG 59.562 47.826 0.00 0.00 0.00 4.24
839 847 3.679389 CACACATTCCCAGTTCTAAGCT 58.321 45.455 0.00 0.00 0.00 3.74
840 848 2.162408 GCACACATTCCCAGTTCTAAGC 59.838 50.000 0.00 0.00 0.00 3.09
841 849 2.416547 CGCACACATTCCCAGTTCTAAG 59.583 50.000 0.00 0.00 0.00 2.18
842 850 2.224426 ACGCACACATTCCCAGTTCTAA 60.224 45.455 0.00 0.00 0.00 2.10
843 851 1.346395 ACGCACACATTCCCAGTTCTA 59.654 47.619 0.00 0.00 0.00 2.10
844 852 0.108585 ACGCACACATTCCCAGTTCT 59.891 50.000 0.00 0.00 0.00 3.01
845 853 0.238289 CACGCACACATTCCCAGTTC 59.762 55.000 0.00 0.00 0.00 3.01
846 854 0.179032 TCACGCACACATTCCCAGTT 60.179 50.000 0.00 0.00 0.00 3.16
847 855 0.179032 TTCACGCACACATTCCCAGT 60.179 50.000 0.00 0.00 0.00 4.00
848 856 0.238289 GTTCACGCACACATTCCCAG 59.762 55.000 0.00 0.00 0.00 4.45
849 857 0.179032 AGTTCACGCACACATTCCCA 60.179 50.000 0.00 0.00 0.00 4.37
850 858 1.803334 TAGTTCACGCACACATTCCC 58.197 50.000 0.00 0.00 0.00 3.97
851 859 3.002862 TGTTTAGTTCACGCACACATTCC 59.997 43.478 0.00 0.00 0.00 3.01
852 860 4.203950 TGTTTAGTTCACGCACACATTC 57.796 40.909 0.00 0.00 0.00 2.67
853 861 4.829064 ATGTTTAGTTCACGCACACATT 57.171 36.364 0.00 0.00 0.00 2.71
854 862 4.391830 CCTATGTTTAGTTCACGCACACAT 59.608 41.667 0.00 0.00 0.00 3.21
855 863 3.743911 CCTATGTTTAGTTCACGCACACA 59.256 43.478 0.00 0.00 0.00 3.72
856 864 3.991773 TCCTATGTTTAGTTCACGCACAC 59.008 43.478 0.00 0.00 0.00 3.82
857 865 4.260139 TCCTATGTTTAGTTCACGCACA 57.740 40.909 0.00 0.00 0.00 4.57
858 866 4.927425 TCTTCCTATGTTTAGTTCACGCAC 59.073 41.667 0.00 0.00 0.00 5.34
859 867 5.047590 TCTCTTCCTATGTTTAGTTCACGCA 60.048 40.000 0.00 0.00 0.00 5.24
860 868 5.288952 GTCTCTTCCTATGTTTAGTTCACGC 59.711 44.000 0.00 0.00 0.00 5.34
861 869 5.805994 GGTCTCTTCCTATGTTTAGTTCACG 59.194 44.000 0.00 0.00 0.00 4.35
862 870 5.805994 CGGTCTCTTCCTATGTTTAGTTCAC 59.194 44.000 0.00 0.00 0.00 3.18
863 871 5.713389 TCGGTCTCTTCCTATGTTTAGTTCA 59.287 40.000 0.00 0.00 0.00 3.18
864 872 6.127675 ACTCGGTCTCTTCCTATGTTTAGTTC 60.128 42.308 0.00 0.00 0.00 3.01
865 873 5.715753 ACTCGGTCTCTTCCTATGTTTAGTT 59.284 40.000 0.00 0.00 0.00 2.24
866 874 5.125739 CACTCGGTCTCTTCCTATGTTTAGT 59.874 44.000 0.00 0.00 0.00 2.24
867 875 5.125739 ACACTCGGTCTCTTCCTATGTTTAG 59.874 44.000 0.00 0.00 0.00 1.85
868 876 5.014858 ACACTCGGTCTCTTCCTATGTTTA 58.985 41.667 0.00 0.00 0.00 2.01
869 877 3.833070 ACACTCGGTCTCTTCCTATGTTT 59.167 43.478 0.00 0.00 0.00 2.83
870 878 3.432378 ACACTCGGTCTCTTCCTATGTT 58.568 45.455 0.00 0.00 0.00 2.71
871 879 3.088789 ACACTCGGTCTCTTCCTATGT 57.911 47.619 0.00 0.00 0.00 2.29
872 880 4.082190 TCAAACACTCGGTCTCTTCCTATG 60.082 45.833 0.00 0.00 0.00 2.23
873 881 4.087182 TCAAACACTCGGTCTCTTCCTAT 58.913 43.478 0.00 0.00 0.00 2.57
874 882 3.493334 TCAAACACTCGGTCTCTTCCTA 58.507 45.455 0.00 0.00 0.00 2.94
875 883 2.317040 TCAAACACTCGGTCTCTTCCT 58.683 47.619 0.00 0.00 0.00 3.36
876 884 2.814280 TCAAACACTCGGTCTCTTCC 57.186 50.000 0.00 0.00 0.00 3.46
996 1005 2.878406 CGACCATTCTGTCAACTTGGTT 59.122 45.455 0.00 0.00 40.67 3.67
1018 1027 1.392168 TCGCGCTTAAATCGGTCAAAG 59.608 47.619 5.56 0.00 0.00 2.77
1235 1281 0.790814 GGAGCACGGAAGAAGAAACG 59.209 55.000 0.00 0.00 0.00 3.60
1288 1339 1.443702 CGTCCGACGTCTCATTGCA 60.444 57.895 14.70 0.00 36.74 4.08
1337 1388 6.886459 ACTTACAAAATACTCCATCTGCATGT 59.114 34.615 0.00 0.00 0.00 3.21
1369 1420 3.519913 ACAGAAGAGGGACAGGATAAACC 59.480 47.826 0.00 0.00 39.35 3.27
1535 1602 6.013379 ACCTTCTATCAAATCCAGTCACAAGA 60.013 38.462 0.00 0.00 0.00 3.02
1605 1672 2.111669 CCTGCCAGTGTCAGTGCA 59.888 61.111 0.00 3.81 0.00 4.57
1672 1739 6.597832 AATAGCAGGTAATCGAGCTAATCT 57.402 37.500 5.98 0.00 42.22 2.40
1687 1754 5.491982 ACTCTGTTTCCACTAAATAGCAGG 58.508 41.667 0.00 0.00 36.52 4.85
1768 1840 8.138712 GTGCTCTATGCTAGTAGAACAGTATTT 58.861 37.037 0.00 0.00 43.37 1.40
1777 1849 4.439253 TCCAGTGCTCTATGCTAGTAGA 57.561 45.455 0.00 0.00 43.37 2.59
1954 2055 1.909302 CTACCCACTCCAGAACACCAT 59.091 52.381 0.00 0.00 0.00 3.55
2103 2205 7.712639 GCTATACTGATTGACCAGAGAATCAAA 59.287 37.037 0.00 0.00 37.96 2.69
2116 2218 3.041211 ACCAGCTGGCTATACTGATTGA 58.959 45.455 33.06 0.00 39.32 2.57
2205 2307 7.257790 TCTCCTTCAGTTCATTCATTTCCTA 57.742 36.000 0.00 0.00 0.00 2.94
2209 2311 7.941238 TCTTCTTCTCCTTCAGTTCATTCATTT 59.059 33.333 0.00 0.00 0.00 2.32
2670 2791 3.690460 CATCAGGATAGTATTTGGGCCC 58.310 50.000 17.59 17.59 0.00 5.80
2671 2792 3.084786 GCATCAGGATAGTATTTGGGCC 58.915 50.000 0.00 0.00 0.00 5.80
2681 2802 3.387374 ACCAGTTCTCAGCATCAGGATAG 59.613 47.826 0.00 0.00 0.00 2.08
2732 2853 6.800408 CACAGAAATAAACTGCATCAGACTTG 59.200 38.462 0.29 0.00 38.74 3.16
2931 3062 6.273825 TCAGTTCTGTCAGTTTAAGTGTCTC 58.726 40.000 0.00 0.00 0.00 3.36
2978 3109 7.497579 TGTGTTTAATTCTGTCAGTTTAGCAGA 59.502 33.333 0.00 0.00 37.47 4.26
2996 3127 8.669946 TGTGAGATTCAGTTATGTGTGTTTAA 57.330 30.769 0.00 0.00 0.00 1.52
3023 3154 0.234106 CAGCAATTATCGCCAGCTCG 59.766 55.000 0.00 0.00 32.35 5.03
3037 3168 6.989759 TGTAAGTTTCAGATCAGTTACAGCAA 59.010 34.615 6.96 0.00 35.02 3.91
3077 3209 3.496160 CATAGCAGGGCAGGGGCT 61.496 66.667 0.00 0.00 40.87 5.19
3114 3247 2.575532 CTCCCACTCAAGTCAAGCAAA 58.424 47.619 0.00 0.00 0.00 3.68
3176 3309 1.817209 GACGTCCTCCTCCCATCAC 59.183 63.158 3.51 0.00 0.00 3.06
3260 3393 4.842948 TCCAGCATAATCTATGGCTTCTCT 59.157 41.667 0.00 0.00 36.68 3.10
3264 3397 3.009916 CCCTCCAGCATAATCTATGGCTT 59.990 47.826 0.00 0.00 36.68 4.35
3269 3402 6.210385 CGCTATATCCCTCCAGCATAATCTAT 59.790 42.308 0.00 0.00 33.55 1.98
3273 3406 3.389329 CCGCTATATCCCTCCAGCATAAT 59.611 47.826 0.00 0.00 33.55 1.28
3276 3409 1.198713 CCGCTATATCCCTCCAGCAT 58.801 55.000 0.00 0.00 33.55 3.79
3350 3483 1.902765 ATCGACATGCTGCTGTGGGA 61.903 55.000 9.00 6.73 0.00 4.37
3407 3540 3.207669 GGAGAAGCAGCGCATGGG 61.208 66.667 11.47 5.19 0.00 4.00
3426 3559 1.079317 GAGAAAGAAGGCGACGGCTC 61.079 60.000 25.18 17.01 37.50 4.70
3442 3575 2.433604 GGATGCATCAGAAGAGGTGAGA 59.566 50.000 27.25 0.00 0.00 3.27
3477 3610 4.702131 AGATTGCCAAGAGATACAACAACC 59.298 41.667 0.00 0.00 0.00 3.77
3479 3612 6.003326 TGAAGATTGCCAAGAGATACAACAA 58.997 36.000 0.00 0.00 0.00 2.83
3491 3624 4.154015 CGTTGACTACATGAAGATTGCCAA 59.846 41.667 0.00 0.00 0.00 4.52
3568 3702 3.175710 AACCCCTTCGCCACTGGT 61.176 61.111 0.00 0.00 0.00 4.00
3571 3705 2.750350 CTGAACCCCTTCGCCACT 59.250 61.111 0.00 0.00 0.00 4.00
3576 3710 1.750399 CCATGGCTGAACCCCTTCG 60.750 63.158 0.00 0.00 37.83 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.