Multiple sequence alignment - TraesCS7D01G388600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G388600 chr7D 100.000 3266 0 0 1 3266 503337040 503340305 0.000000e+00 6032.0
1 TraesCS7D01G388600 chr7D 90.996 1355 85 8 609 1937 503290865 503292208 0.000000e+00 1792.0
2 TraesCS7D01G388600 chr7D 87.941 1418 111 24 563 1937 503738410 503739810 0.000000e+00 1616.0
3 TraesCS7D01G388600 chr7D 89.032 1085 63 22 1692 2745 503739509 503740568 0.000000e+00 1293.0
4 TraesCS7D01G388600 chr7D 86.158 708 84 4 1692 2387 503291904 503292609 0.000000e+00 752.0
5 TraesCS7D01G388600 chr7D 93.377 453 24 3 2734 3186 503747167 503747613 0.000000e+00 665.0
6 TraesCS7D01G388600 chr7D 80.729 851 116 28 627 1467 459427418 459426606 1.290000e-173 619.0
7 TraesCS7D01G388600 chr7D 84.512 523 72 6 951 1467 439868703 439868184 2.910000e-140 508.0
8 TraesCS7D01G388600 chr7D 96.575 146 5 0 29 174 552165961 552165816 3.260000e-60 243.0
9 TraesCS7D01G388600 chr7D 93.548 155 9 1 24 178 614794025 614793872 2.530000e-56 230.0
10 TraesCS7D01G388600 chr7D 90.667 150 11 3 2384 2530 503292654 503292803 2.570000e-46 196.0
11 TraesCS7D01G388600 chr7D 94.318 88 3 2 3179 3266 503747774 503747859 2.040000e-27 134.0
12 TraesCS7D01G388600 chr7D 88.136 118 5 2 354 469 503738258 503738368 7.350000e-27 132.0
13 TraesCS7D01G388600 chr7A 88.660 1746 123 30 309 1994 570173869 570175599 0.000000e+00 2058.0
14 TraesCS7D01G388600 chr7A 91.368 1425 73 19 1789 3186 571370694 571372095 0.000000e+00 1905.0
15 TraesCS7D01G388600 chr7A 90.576 1146 73 14 614 1735 571363440 571364574 0.000000e+00 1485.0
16 TraesCS7D01G388600 chr7A 87.192 812 82 6 1648 2446 570175310 570176112 0.000000e+00 904.0
17 TraesCS7D01G388600 chr7A 88.359 524 54 3 2670 3186 571324835 571325358 9.950000e-175 623.0
18 TraesCS7D01G388600 chr7A 84.909 497 68 4 978 1467 491260507 491260011 2.260000e-136 496.0
19 TraesCS7D01G388600 chr7A 84.590 305 45 1 1692 1994 570175238 570175542 5.300000e-78 302.0
20 TraesCS7D01G388600 chr7A 80.882 408 31 25 2288 2673 571324199 571324581 8.920000e-71 278.0
21 TraesCS7D01G388600 chr7A 96.053 152 5 1 24 175 710804846 710804996 2.520000e-61 246.0
22 TraesCS7D01G388600 chr7A 77.315 432 73 9 1529 1935 540798768 540799199 7.050000e-57 231.0
23 TraesCS7D01G388600 chr7A 81.004 279 24 19 307 575 571360692 571360951 9.250000e-46 195.0
24 TraesCS7D01G388600 chr7A 94.318 88 5 0 3179 3266 571372249 571372336 5.680000e-28 135.0
25 TraesCS7D01G388600 chr7B 90.206 1358 83 12 622 1937 531816257 531817606 0.000000e+00 1725.0
26 TraesCS7D01G388600 chr7B 89.664 1219 74 21 618 1800 531890785 531891987 0.000000e+00 1506.0
27 TraesCS7D01G388600 chr7B 85.470 1053 105 24 1771 2785 531891987 531893029 0.000000e+00 1053.0
28 TraesCS7D01G388600 chr7B 85.789 767 82 14 1692 2443 531817302 531818056 0.000000e+00 787.0
29 TraesCS7D01G388600 chr7B 82.215 298 18 22 309 602 531815926 531816192 1.180000e-54 224.0
30 TraesCS7D01G388600 chr7B 92.063 63 3 2 500 560 531890659 531890721 1.610000e-13 87.9
31 TraesCS7D01G388600 chr2A 97.260 146 4 0 30 175 26861928 26861783 7.000000e-62 248.0
32 TraesCS7D01G388600 chr6D 96.622 148 5 0 28 175 256727866 256727719 2.520000e-61 246.0
33 TraesCS7D01G388600 chr1D 97.222 144 4 0 32 175 480810618 480810761 9.050000e-61 244.0
34 TraesCS7D01G388600 chr1D 94.079 152 6 1 24 175 452263822 452263674 9.120000e-56 228.0
35 TraesCS7D01G388600 chr6A 95.238 147 7 0 29 175 124711587 124711441 1.960000e-57 233.0
36 TraesCS7D01G388600 chr6A 95.238 147 7 0 29 175 534596994 534596848 1.960000e-57 233.0
37 TraesCS7D01G388600 chr2D 97.297 37 1 0 3230 3266 418071925 418071889 2.720000e-06 63.9
38 TraesCS7D01G388600 chr6B 100.000 31 0 0 277 307 260818214 260818244 1.270000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G388600 chr7D 503337040 503340305 3265 False 6032.000000 6032 100.000000 1 3266 1 chr7D.!!$F1 3265
1 TraesCS7D01G388600 chr7D 503738258 503740568 2310 False 1013.666667 1616 88.369667 354 2745 3 chr7D.!!$F3 2391
2 TraesCS7D01G388600 chr7D 503290865 503292803 1938 False 913.333333 1792 89.273667 609 2530 3 chr7D.!!$F2 1921
3 TraesCS7D01G388600 chr7D 459426606 459427418 812 True 619.000000 619 80.729000 627 1467 1 chr7D.!!$R2 840
4 TraesCS7D01G388600 chr7D 439868184 439868703 519 True 508.000000 508 84.512000 951 1467 1 chr7D.!!$R1 516
5 TraesCS7D01G388600 chr7D 503747167 503747859 692 False 399.500000 665 93.847500 2734 3266 2 chr7D.!!$F4 532
6 TraesCS7D01G388600 chr7A 570173869 570176112 2243 False 1088.000000 2058 86.814000 309 2446 3 chr7A.!!$F3 2137
7 TraesCS7D01G388600 chr7A 571370694 571372336 1642 False 1020.000000 1905 92.843000 1789 3266 2 chr7A.!!$F6 1477
8 TraesCS7D01G388600 chr7A 571360692 571364574 3882 False 840.000000 1485 85.790000 307 1735 2 chr7A.!!$F5 1428
9 TraesCS7D01G388600 chr7A 571324199 571325358 1159 False 450.500000 623 84.620500 2288 3186 2 chr7A.!!$F4 898
10 TraesCS7D01G388600 chr7B 531815926 531818056 2130 False 912.000000 1725 86.070000 309 2443 3 chr7B.!!$F1 2134
11 TraesCS7D01G388600 chr7B 531890659 531893029 2370 False 882.300000 1506 89.065667 500 2785 3 chr7B.!!$F2 2285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
140 141 0.038251 TGTGAGATGGAGTGTCGTGC 60.038 55.0 0.0 0.0 0.00 5.34 F
1740 4331 0.098905 GTGACGAGATGCTCACGCTA 59.901 55.0 0.0 0.0 33.83 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2022 4820 0.249826 TGACTGCATCGCACAACTCA 60.250 50.000 0.0 0.0 33.79 3.41 R
3130 6299 2.939103 GCGCTCCAGAATTAACTGTCAT 59.061 45.455 0.0 0.0 36.30 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.708544 CGGTGGGGGCGGAGTTAA 61.709 66.667 0.00 0.00 0.00 2.01
18 19 2.045634 GGTGGGGGCGGAGTTAAC 60.046 66.667 0.00 0.00 0.00 2.01
19 20 2.045634 GTGGGGGCGGAGTTAACC 60.046 66.667 0.88 0.00 0.00 2.85
20 21 3.332385 TGGGGGCGGAGTTAACCC 61.332 66.667 0.88 2.57 43.44 4.11
21 22 3.013327 GGGGGCGGAGTTAACCCT 61.013 66.667 0.88 0.00 43.68 4.34
22 23 1.690283 GGGGGCGGAGTTAACCCTA 60.690 63.158 0.88 0.00 43.68 3.53
23 24 1.058428 GGGGGCGGAGTTAACCCTAT 61.058 60.000 0.88 0.00 43.68 2.57
24 25 0.108019 GGGGCGGAGTTAACCCTATG 59.892 60.000 0.88 0.00 43.68 2.23
25 26 1.125633 GGGCGGAGTTAACCCTATGA 58.874 55.000 0.88 0.00 40.75 2.15
26 27 1.697982 GGGCGGAGTTAACCCTATGAT 59.302 52.381 0.88 0.00 40.75 2.45
27 28 2.105993 GGGCGGAGTTAACCCTATGATT 59.894 50.000 0.88 0.00 40.75 2.57
28 29 3.325716 GGGCGGAGTTAACCCTATGATTA 59.674 47.826 0.88 0.00 40.75 1.75
29 30 4.313282 GGCGGAGTTAACCCTATGATTAC 58.687 47.826 0.88 0.00 0.00 1.89
30 31 3.985925 GCGGAGTTAACCCTATGATTACG 59.014 47.826 0.88 0.00 0.00 3.18
31 32 4.261741 GCGGAGTTAACCCTATGATTACGA 60.262 45.833 0.88 0.00 0.00 3.43
32 33 5.737063 GCGGAGTTAACCCTATGATTACGAA 60.737 44.000 0.88 0.00 0.00 3.85
33 34 6.275335 CGGAGTTAACCCTATGATTACGAAA 58.725 40.000 0.88 0.00 0.00 3.46
34 35 6.199719 CGGAGTTAACCCTATGATTACGAAAC 59.800 42.308 0.88 0.00 0.00 2.78
35 36 7.270779 GGAGTTAACCCTATGATTACGAAACT 58.729 38.462 0.88 0.00 0.00 2.66
36 37 8.416329 GGAGTTAACCCTATGATTACGAAACTA 58.584 37.037 0.88 0.00 0.00 2.24
37 38 9.242477 GAGTTAACCCTATGATTACGAAACTAC 57.758 37.037 0.88 0.00 0.00 2.73
38 39 8.975295 AGTTAACCCTATGATTACGAAACTACT 58.025 33.333 0.88 0.00 0.00 2.57
39 40 9.591792 GTTAACCCTATGATTACGAAACTACTT 57.408 33.333 0.00 0.00 0.00 2.24
40 41 9.807649 TTAACCCTATGATTACGAAACTACTTC 57.192 33.333 0.00 0.00 0.00 3.01
41 42 7.414222 ACCCTATGATTACGAAACTACTTCA 57.586 36.000 0.00 0.00 33.17 3.02
42 43 7.263496 ACCCTATGATTACGAAACTACTTCAC 58.737 38.462 0.00 0.00 33.17 3.18
43 44 7.093640 ACCCTATGATTACGAAACTACTTCACA 60.094 37.037 0.00 0.00 33.17 3.58
44 45 7.435488 CCCTATGATTACGAAACTACTTCACAG 59.565 40.741 0.00 0.00 33.17 3.66
45 46 8.188799 CCTATGATTACGAAACTACTTCACAGA 58.811 37.037 0.00 0.00 33.17 3.41
46 47 7.813852 ATGATTACGAAACTACTTCACAGAC 57.186 36.000 0.00 0.00 33.17 3.51
47 48 5.854866 TGATTACGAAACTACTTCACAGACG 59.145 40.000 0.00 0.00 33.17 4.18
48 49 2.391879 ACGAAACTACTTCACAGACGC 58.608 47.619 0.00 0.00 33.17 5.19
49 50 1.719780 CGAAACTACTTCACAGACGCC 59.280 52.381 0.00 0.00 33.17 5.68
50 51 2.750948 GAAACTACTTCACAGACGCCA 58.249 47.619 0.00 0.00 33.86 5.69
51 52 3.326747 GAAACTACTTCACAGACGCCAT 58.673 45.455 0.00 0.00 33.86 4.40
52 53 3.402628 AACTACTTCACAGACGCCATT 57.597 42.857 0.00 0.00 0.00 3.16
53 54 3.402628 ACTACTTCACAGACGCCATTT 57.597 42.857 0.00 0.00 0.00 2.32
54 55 3.067106 ACTACTTCACAGACGCCATTTG 58.933 45.455 0.00 0.00 0.00 2.32
55 56 0.593128 ACTTCACAGACGCCATTTGC 59.407 50.000 0.00 0.00 0.00 3.68
56 57 0.877071 CTTCACAGACGCCATTTGCT 59.123 50.000 0.00 0.00 38.05 3.91
57 58 1.267806 CTTCACAGACGCCATTTGCTT 59.732 47.619 0.00 0.00 38.05 3.91
58 59 0.592637 TCACAGACGCCATTTGCTTG 59.407 50.000 0.00 0.00 38.05 4.01
59 60 1.005294 CACAGACGCCATTTGCTTGC 61.005 55.000 0.00 0.00 38.05 4.01
60 61 1.286570 CAGACGCCATTTGCTTGCA 59.713 52.632 0.00 0.00 38.05 4.08
61 62 1.005294 CAGACGCCATTTGCTTGCAC 61.005 55.000 0.00 0.00 38.05 4.57
62 63 2.050168 ACGCCATTTGCTTGCACG 60.050 55.556 0.00 0.00 38.05 5.34
63 64 2.254951 CGCCATTTGCTTGCACGA 59.745 55.556 0.00 0.00 38.05 4.35
64 65 1.153978 CGCCATTTGCTTGCACGAT 60.154 52.632 0.00 0.00 38.05 3.73
65 66 1.135699 CGCCATTTGCTTGCACGATC 61.136 55.000 0.00 0.00 38.05 3.69
66 67 0.803380 GCCATTTGCTTGCACGATCC 60.803 55.000 0.00 0.00 36.87 3.36
67 68 0.813184 CCATTTGCTTGCACGATCCT 59.187 50.000 0.00 0.00 0.00 3.24
68 69 1.468565 CCATTTGCTTGCACGATCCTG 60.469 52.381 0.00 0.00 0.00 3.86
69 70 1.469703 CATTTGCTTGCACGATCCTGA 59.530 47.619 0.00 0.00 0.00 3.86
70 71 1.159285 TTTGCTTGCACGATCCTGAG 58.841 50.000 0.00 0.00 0.00 3.35
71 72 1.300971 TTGCTTGCACGATCCTGAGC 61.301 55.000 0.00 0.00 0.00 4.26
72 73 2.467826 GCTTGCACGATCCTGAGCC 61.468 63.158 0.00 0.00 0.00 4.70
73 74 2.125552 TTGCACGATCCTGAGCCG 60.126 61.111 0.00 0.00 0.00 5.52
74 75 2.563050 CTTGCACGATCCTGAGCCGA 62.563 60.000 0.00 0.00 0.00 5.54
75 76 1.960040 TTGCACGATCCTGAGCCGAT 61.960 55.000 0.00 0.00 0.00 4.18
76 77 1.953138 GCACGATCCTGAGCCGATG 60.953 63.158 0.00 0.00 0.00 3.84
77 78 1.953138 CACGATCCTGAGCCGATGC 60.953 63.158 0.00 0.00 37.95 3.91
78 79 2.356793 CGATCCTGAGCCGATGCC 60.357 66.667 0.00 0.00 38.69 4.40
79 80 2.824546 GATCCTGAGCCGATGCCA 59.175 61.111 0.00 0.00 38.69 4.92
80 81 1.146930 GATCCTGAGCCGATGCCAA 59.853 57.895 0.00 0.00 38.69 4.52
81 82 0.464373 GATCCTGAGCCGATGCCAAA 60.464 55.000 0.00 0.00 38.69 3.28
82 83 0.184451 ATCCTGAGCCGATGCCAAAT 59.816 50.000 0.00 0.00 38.69 2.32
83 84 0.464373 TCCTGAGCCGATGCCAAATC 60.464 55.000 0.00 0.00 38.69 2.17
84 85 1.450531 CCTGAGCCGATGCCAAATCC 61.451 60.000 0.00 0.00 38.69 3.01
85 86 0.749091 CTGAGCCGATGCCAAATCCA 60.749 55.000 0.00 0.00 38.69 3.41
86 87 0.323269 TGAGCCGATGCCAAATCCAA 60.323 50.000 0.00 0.00 38.69 3.53
87 88 0.101219 GAGCCGATGCCAAATCCAAC 59.899 55.000 0.00 0.00 38.69 3.77
88 89 0.611618 AGCCGATGCCAAATCCAACA 60.612 50.000 0.00 0.00 38.69 3.33
89 90 0.246086 GCCGATGCCAAATCCAACAA 59.754 50.000 0.00 0.00 0.00 2.83
90 91 1.994916 CCGATGCCAAATCCAACAAC 58.005 50.000 0.00 0.00 0.00 3.32
91 92 1.545582 CCGATGCCAAATCCAACAACT 59.454 47.619 0.00 0.00 0.00 3.16
92 93 2.029110 CCGATGCCAAATCCAACAACTT 60.029 45.455 0.00 0.00 0.00 2.66
93 94 3.554752 CCGATGCCAAATCCAACAACTTT 60.555 43.478 0.00 0.00 0.00 2.66
94 95 3.674753 CGATGCCAAATCCAACAACTTTC 59.325 43.478 0.00 0.00 0.00 2.62
95 96 4.559300 CGATGCCAAATCCAACAACTTTCT 60.559 41.667 0.00 0.00 0.00 2.52
96 97 4.057406 TGCCAAATCCAACAACTTTCTG 57.943 40.909 0.00 0.00 0.00 3.02
97 98 3.450457 TGCCAAATCCAACAACTTTCTGT 59.550 39.130 0.00 0.00 0.00 3.41
98 99 4.646945 TGCCAAATCCAACAACTTTCTGTA 59.353 37.500 0.00 0.00 0.00 2.74
99 100 4.982295 GCCAAATCCAACAACTTTCTGTAC 59.018 41.667 0.00 0.00 0.00 2.90
100 101 5.451242 GCCAAATCCAACAACTTTCTGTACA 60.451 40.000 0.00 0.00 0.00 2.90
101 102 6.738453 GCCAAATCCAACAACTTTCTGTACAT 60.738 38.462 0.00 0.00 0.00 2.29
102 103 7.209475 CCAAATCCAACAACTTTCTGTACATT 58.791 34.615 0.00 0.00 0.00 2.71
103 104 7.169645 CCAAATCCAACAACTTTCTGTACATTG 59.830 37.037 0.00 0.00 0.00 2.82
104 105 5.766150 TCCAACAACTTTCTGTACATTGG 57.234 39.130 12.42 12.42 36.85 3.16
105 106 4.037446 TCCAACAACTTTCTGTACATTGGC 59.963 41.667 13.42 0.00 36.12 4.52
106 107 3.896648 ACAACTTTCTGTACATTGGCG 57.103 42.857 10.13 0.00 0.00 5.69
107 108 3.211045 ACAACTTTCTGTACATTGGCGT 58.789 40.909 10.13 0.00 0.00 5.68
108 109 3.250040 ACAACTTTCTGTACATTGGCGTC 59.750 43.478 10.13 0.00 0.00 5.19
109 110 3.402628 ACTTTCTGTACATTGGCGTCT 57.597 42.857 0.00 0.00 0.00 4.18
110 111 3.740115 ACTTTCTGTACATTGGCGTCTT 58.260 40.909 0.00 0.00 0.00 3.01
111 112 3.498397 ACTTTCTGTACATTGGCGTCTTG 59.502 43.478 0.00 0.00 0.00 3.02
112 113 3.394674 TTCTGTACATTGGCGTCTTGA 57.605 42.857 0.00 0.00 0.00 3.02
113 114 3.394674 TCTGTACATTGGCGTCTTGAA 57.605 42.857 0.00 0.00 0.00 2.69
114 115 3.937814 TCTGTACATTGGCGTCTTGAAT 58.062 40.909 0.00 0.00 0.00 2.57
115 116 3.684305 TCTGTACATTGGCGTCTTGAATG 59.316 43.478 0.00 0.00 33.99 2.67
116 117 2.746904 TGTACATTGGCGTCTTGAATGG 59.253 45.455 3.93 0.00 32.39 3.16
117 118 2.198827 ACATTGGCGTCTTGAATGGA 57.801 45.000 3.93 0.00 32.39 3.41
118 119 2.726821 ACATTGGCGTCTTGAATGGAT 58.273 42.857 3.93 0.00 32.39 3.41
119 120 2.424601 ACATTGGCGTCTTGAATGGATG 59.575 45.455 3.93 0.00 32.39 3.51
120 121 1.462616 TTGGCGTCTTGAATGGATGG 58.537 50.000 0.00 0.00 0.00 3.51
121 122 0.327924 TGGCGTCTTGAATGGATGGT 59.672 50.000 0.00 0.00 0.00 3.55
122 123 0.734889 GGCGTCTTGAATGGATGGTG 59.265 55.000 0.00 0.00 0.00 4.17
123 124 1.453155 GCGTCTTGAATGGATGGTGT 58.547 50.000 0.00 0.00 0.00 4.16
124 125 1.131126 GCGTCTTGAATGGATGGTGTG 59.869 52.381 0.00 0.00 0.00 3.82
125 126 2.698803 CGTCTTGAATGGATGGTGTGA 58.301 47.619 0.00 0.00 0.00 3.58
126 127 2.674852 CGTCTTGAATGGATGGTGTGAG 59.325 50.000 0.00 0.00 0.00 3.51
127 128 3.617288 CGTCTTGAATGGATGGTGTGAGA 60.617 47.826 0.00 0.00 0.00 3.27
128 129 4.521146 GTCTTGAATGGATGGTGTGAGAT 58.479 43.478 0.00 0.00 0.00 2.75
129 130 4.334759 GTCTTGAATGGATGGTGTGAGATG 59.665 45.833 0.00 0.00 0.00 2.90
130 131 3.286329 TGAATGGATGGTGTGAGATGG 57.714 47.619 0.00 0.00 0.00 3.51
131 132 2.845586 TGAATGGATGGTGTGAGATGGA 59.154 45.455 0.00 0.00 0.00 3.41
132 133 3.118149 TGAATGGATGGTGTGAGATGGAG 60.118 47.826 0.00 0.00 0.00 3.86
133 134 1.956869 TGGATGGTGTGAGATGGAGT 58.043 50.000 0.00 0.00 0.00 3.85
134 135 1.556451 TGGATGGTGTGAGATGGAGTG 59.444 52.381 0.00 0.00 0.00 3.51
135 136 1.556911 GGATGGTGTGAGATGGAGTGT 59.443 52.381 0.00 0.00 0.00 3.55
136 137 2.419297 GGATGGTGTGAGATGGAGTGTC 60.419 54.545 0.00 0.00 0.00 3.67
137 138 0.603065 TGGTGTGAGATGGAGTGTCG 59.397 55.000 0.00 0.00 0.00 4.35
138 139 0.603569 GGTGTGAGATGGAGTGTCGT 59.396 55.000 0.00 0.00 0.00 4.34
139 140 1.670087 GGTGTGAGATGGAGTGTCGTG 60.670 57.143 0.00 0.00 0.00 4.35
140 141 0.038251 TGTGAGATGGAGTGTCGTGC 60.038 55.000 0.00 0.00 0.00 5.34
141 142 0.244994 GTGAGATGGAGTGTCGTGCT 59.755 55.000 0.00 0.00 0.00 4.40
142 143 0.244721 TGAGATGGAGTGTCGTGCTG 59.755 55.000 0.00 0.00 0.00 4.41
143 144 0.528017 GAGATGGAGTGTCGTGCTGA 59.472 55.000 0.00 0.00 0.00 4.26
144 145 0.969149 AGATGGAGTGTCGTGCTGAA 59.031 50.000 0.00 0.00 0.00 3.02
145 146 1.344438 AGATGGAGTGTCGTGCTGAAA 59.656 47.619 0.00 0.00 0.00 2.69
146 147 2.027745 AGATGGAGTGTCGTGCTGAAAT 60.028 45.455 0.00 0.00 0.00 2.17
147 148 1.795768 TGGAGTGTCGTGCTGAAATC 58.204 50.000 0.00 0.00 0.00 2.17
148 149 0.716108 GGAGTGTCGTGCTGAAATCG 59.284 55.000 0.00 0.00 0.00 3.34
149 150 1.419374 GAGTGTCGTGCTGAAATCGT 58.581 50.000 0.00 0.00 0.00 3.73
150 151 2.592194 GAGTGTCGTGCTGAAATCGTA 58.408 47.619 0.00 0.00 0.00 3.43
151 152 3.179830 GAGTGTCGTGCTGAAATCGTAT 58.820 45.455 0.00 0.00 0.00 3.06
152 153 2.923655 AGTGTCGTGCTGAAATCGTATG 59.076 45.455 0.00 0.00 0.00 2.39
153 154 2.666508 GTGTCGTGCTGAAATCGTATGT 59.333 45.455 0.00 0.00 0.00 2.29
154 155 2.666022 TGTCGTGCTGAAATCGTATGTG 59.334 45.455 0.00 0.00 0.00 3.21
155 156 2.921121 GTCGTGCTGAAATCGTATGTGA 59.079 45.455 0.00 0.00 0.00 3.58
156 157 3.366724 GTCGTGCTGAAATCGTATGTGAA 59.633 43.478 0.00 0.00 0.00 3.18
157 158 4.032900 GTCGTGCTGAAATCGTATGTGAAT 59.967 41.667 0.00 0.00 0.00 2.57
158 159 5.231357 GTCGTGCTGAAATCGTATGTGAATA 59.769 40.000 0.00 0.00 0.00 1.75
159 160 5.983118 TCGTGCTGAAATCGTATGTGAATAT 59.017 36.000 0.00 0.00 0.00 1.28
160 161 6.143919 TCGTGCTGAAATCGTATGTGAATATC 59.856 38.462 0.00 0.00 0.00 1.63
161 162 6.292129 GTGCTGAAATCGTATGTGAATATCG 58.708 40.000 0.00 0.00 0.00 2.92
162 163 5.983118 TGCTGAAATCGTATGTGAATATCGT 59.017 36.000 0.00 0.00 0.00 3.73
163 164 6.143919 TGCTGAAATCGTATGTGAATATCGTC 59.856 38.462 0.00 0.00 0.00 4.20
164 165 6.363626 GCTGAAATCGTATGTGAATATCGTCT 59.636 38.462 0.00 0.00 0.00 4.18
165 166 7.618139 GCTGAAATCGTATGTGAATATCGTCTG 60.618 40.741 0.00 0.00 0.00 3.51
166 167 7.200455 TGAAATCGTATGTGAATATCGTCTGT 58.800 34.615 0.00 0.00 0.00 3.41
167 168 8.347035 TGAAATCGTATGTGAATATCGTCTGTA 58.653 33.333 0.00 0.00 0.00 2.74
168 169 9.343103 GAAATCGTATGTGAATATCGTCTGTAT 57.657 33.333 0.00 0.00 0.00 2.29
170 171 9.989869 AATCGTATGTGAATATCGTCTGTATAG 57.010 33.333 0.00 0.00 0.00 1.31
171 172 7.461918 TCGTATGTGAATATCGTCTGTATAGC 58.538 38.462 0.00 0.00 0.00 2.97
172 173 7.118680 TCGTATGTGAATATCGTCTGTATAGCA 59.881 37.037 0.00 0.00 0.00 3.49
173 174 7.426743 CGTATGTGAATATCGTCTGTATAGCAG 59.573 40.741 0.00 0.00 46.34 4.24
174 175 6.635030 TGTGAATATCGTCTGTATAGCAGT 57.365 37.500 0.00 0.00 45.23 4.40
175 176 7.739498 TGTGAATATCGTCTGTATAGCAGTA 57.261 36.000 0.00 0.00 45.23 2.74
176 177 8.161699 TGTGAATATCGTCTGTATAGCAGTAA 57.838 34.615 0.00 0.00 45.23 2.24
177 178 8.793592 TGTGAATATCGTCTGTATAGCAGTAAT 58.206 33.333 0.00 0.00 45.23 1.89
185 186 5.730296 CTGTATAGCAGTAATACAGGGCT 57.270 43.478 13.11 8.74 46.89 5.19
186 187 5.468540 TGTATAGCAGTAATACAGGGCTG 57.531 43.478 12.34 0.00 35.44 4.85
187 188 6.080173 CTGTATAGCAGTAATACAGGGCTGC 61.080 48.000 13.11 7.23 46.89 5.25
190 191 2.401583 CAGTAATACAGGGCTGCACA 57.598 50.000 4.01 0.00 0.00 4.57
191 192 2.283298 CAGTAATACAGGGCTGCACAG 58.717 52.381 4.01 0.00 0.00 3.66
192 193 1.210478 AGTAATACAGGGCTGCACAGG 59.790 52.381 4.01 0.00 0.00 4.00
193 194 0.546122 TAATACAGGGCTGCACAGGG 59.454 55.000 4.01 0.00 0.00 4.45
194 195 1.207488 AATACAGGGCTGCACAGGGA 61.207 55.000 4.01 0.00 0.00 4.20
195 196 1.630126 ATACAGGGCTGCACAGGGAG 61.630 60.000 4.01 0.00 35.23 4.30
196 197 4.421515 CAGGGCTGCACAGGGAGG 62.422 72.222 4.01 0.00 32.28 4.30
197 198 4.990910 AGGGCTGCACAGGGAGGT 62.991 66.667 4.01 0.00 32.28 3.85
198 199 4.729918 GGGCTGCACAGGGAGGTG 62.730 72.222 0.50 0.00 41.72 4.00
204 205 2.667418 CACAGGGAGGTGCTGGAG 59.333 66.667 0.00 0.00 31.10 3.86
205 206 1.915266 CACAGGGAGGTGCTGGAGA 60.915 63.158 0.00 0.00 31.10 3.71
206 207 1.081833 ACAGGGAGGTGCTGGAGAT 59.918 57.895 0.00 0.00 0.00 2.75
207 208 0.339859 ACAGGGAGGTGCTGGAGATA 59.660 55.000 0.00 0.00 0.00 1.98
208 209 1.273838 ACAGGGAGGTGCTGGAGATAA 60.274 52.381 0.00 0.00 0.00 1.75
209 210 1.415659 CAGGGAGGTGCTGGAGATAAG 59.584 57.143 0.00 0.00 0.00 1.73
210 211 1.292242 AGGGAGGTGCTGGAGATAAGA 59.708 52.381 0.00 0.00 0.00 2.10
211 212 2.119495 GGGAGGTGCTGGAGATAAGAA 58.881 52.381 0.00 0.00 0.00 2.52
212 213 2.505819 GGGAGGTGCTGGAGATAAGAAA 59.494 50.000 0.00 0.00 0.00 2.52
213 214 3.432890 GGGAGGTGCTGGAGATAAGAAAG 60.433 52.174 0.00 0.00 0.00 2.62
214 215 3.432890 GGAGGTGCTGGAGATAAGAAAGG 60.433 52.174 0.00 0.00 0.00 3.11
215 216 3.452627 GAGGTGCTGGAGATAAGAAAGGA 59.547 47.826 0.00 0.00 0.00 3.36
216 217 3.846588 AGGTGCTGGAGATAAGAAAGGAA 59.153 43.478 0.00 0.00 0.00 3.36
217 218 4.080638 AGGTGCTGGAGATAAGAAAGGAAG 60.081 45.833 0.00 0.00 0.00 3.46
218 219 3.625313 GTGCTGGAGATAAGAAAGGAAGC 59.375 47.826 0.00 0.00 0.00 3.86
219 220 3.210227 GCTGGAGATAAGAAAGGAAGCC 58.790 50.000 0.00 0.00 0.00 4.35
220 221 3.370953 GCTGGAGATAAGAAAGGAAGCCA 60.371 47.826 0.00 0.00 0.00 4.75
221 222 4.195416 CTGGAGATAAGAAAGGAAGCCAC 58.805 47.826 0.00 0.00 0.00 5.01
222 223 3.198872 GGAGATAAGAAAGGAAGCCACG 58.801 50.000 0.00 0.00 0.00 4.94
223 224 2.609916 GAGATAAGAAAGGAAGCCACGC 59.390 50.000 0.00 0.00 0.00 5.34
224 225 1.671328 GATAAGAAAGGAAGCCACGCC 59.329 52.381 0.00 0.00 0.00 5.68
225 226 0.690762 TAAGAAAGGAAGCCACGCCT 59.309 50.000 0.00 0.00 35.61 5.52
226 227 0.606673 AAGAAAGGAAGCCACGCCTC 60.607 55.000 0.00 0.00 32.07 4.70
227 228 1.302511 GAAAGGAAGCCACGCCTCA 60.303 57.895 0.00 0.00 32.07 3.86
228 229 0.889186 GAAAGGAAGCCACGCCTCAA 60.889 55.000 0.00 0.00 32.07 3.02
229 230 1.172812 AAAGGAAGCCACGCCTCAAC 61.173 55.000 0.00 0.00 32.07 3.18
230 231 3.056328 GGAAGCCACGCCTCAACC 61.056 66.667 0.00 0.00 0.00 3.77
231 232 2.032681 GAAGCCACGCCTCAACCT 59.967 61.111 0.00 0.00 0.00 3.50
232 233 1.600916 GAAGCCACGCCTCAACCTT 60.601 57.895 0.00 0.00 0.00 3.50
233 234 1.152756 AAGCCACGCCTCAACCTTT 60.153 52.632 0.00 0.00 0.00 3.11
234 235 1.172812 AAGCCACGCCTCAACCTTTC 61.173 55.000 0.00 0.00 0.00 2.62
235 236 2.626780 GCCACGCCTCAACCTTTCC 61.627 63.158 0.00 0.00 0.00 3.13
236 237 1.971695 CCACGCCTCAACCTTTCCC 60.972 63.158 0.00 0.00 0.00 3.97
237 238 1.073199 CACGCCTCAACCTTTCCCT 59.927 57.895 0.00 0.00 0.00 4.20
238 239 0.323629 CACGCCTCAACCTTTCCCTA 59.676 55.000 0.00 0.00 0.00 3.53
239 240 1.061546 ACGCCTCAACCTTTCCCTAA 58.938 50.000 0.00 0.00 0.00 2.69
240 241 1.271217 ACGCCTCAACCTTTCCCTAAC 60.271 52.381 0.00 0.00 0.00 2.34
241 242 1.271163 CGCCTCAACCTTTCCCTAACA 60.271 52.381 0.00 0.00 0.00 2.41
242 243 2.812613 CGCCTCAACCTTTCCCTAACAA 60.813 50.000 0.00 0.00 0.00 2.83
243 244 3.227614 GCCTCAACCTTTCCCTAACAAA 58.772 45.455 0.00 0.00 0.00 2.83
244 245 3.832490 GCCTCAACCTTTCCCTAACAAAT 59.168 43.478 0.00 0.00 0.00 2.32
245 246 4.321974 GCCTCAACCTTTCCCTAACAAATG 60.322 45.833 0.00 0.00 0.00 2.32
246 247 4.220602 CCTCAACCTTTCCCTAACAAATGG 59.779 45.833 0.00 0.00 0.00 3.16
247 248 4.156477 TCAACCTTTCCCTAACAAATGGG 58.844 43.478 0.00 0.00 44.66 4.00
253 254 1.847328 CCCTAACAAATGGGGTCCAC 58.153 55.000 0.00 0.00 44.78 4.02
254 255 1.618616 CCCTAACAAATGGGGTCCACC 60.619 57.143 0.00 0.00 44.78 4.61
279 280 3.763671 AAAAACCCAGGAGCGCTG 58.236 55.556 18.48 1.17 0.00 5.18
280 281 1.152756 AAAAACCCAGGAGCGCTGT 60.153 52.632 18.48 2.03 0.00 4.40
281 282 0.109723 AAAAACCCAGGAGCGCTGTA 59.890 50.000 18.48 0.00 0.00 2.74
282 283 0.109723 AAAACCCAGGAGCGCTGTAA 59.890 50.000 18.48 0.00 0.00 2.41
283 284 0.328258 AAACCCAGGAGCGCTGTAAT 59.672 50.000 18.48 0.00 0.00 1.89
284 285 0.328258 AACCCAGGAGCGCTGTAATT 59.672 50.000 18.48 0.00 0.00 1.40
285 286 0.328258 ACCCAGGAGCGCTGTAATTT 59.672 50.000 18.48 0.00 0.00 1.82
286 287 1.271926 ACCCAGGAGCGCTGTAATTTT 60.272 47.619 18.48 0.00 0.00 1.82
287 288 1.818674 CCCAGGAGCGCTGTAATTTTT 59.181 47.619 18.48 0.00 0.00 1.94
288 289 2.415893 CCCAGGAGCGCTGTAATTTTTG 60.416 50.000 18.48 0.74 0.00 2.44
289 290 2.415893 CCAGGAGCGCTGTAATTTTTGG 60.416 50.000 18.48 6.67 0.00 3.28
290 291 1.818674 AGGAGCGCTGTAATTTTTGGG 59.181 47.619 18.48 0.00 0.00 4.12
291 292 1.816224 GGAGCGCTGTAATTTTTGGGA 59.184 47.619 18.48 0.00 0.00 4.37
292 293 2.159379 GGAGCGCTGTAATTTTTGGGAG 60.159 50.000 18.48 0.00 0.00 4.30
293 294 1.202348 AGCGCTGTAATTTTTGGGAGC 59.798 47.619 10.39 0.00 0.00 4.70
294 295 1.202348 GCGCTGTAATTTTTGGGAGCT 59.798 47.619 0.00 0.00 0.00 4.09
295 296 2.352715 GCGCTGTAATTTTTGGGAGCTT 60.353 45.455 0.00 0.00 0.00 3.74
296 297 3.119637 GCGCTGTAATTTTTGGGAGCTTA 60.120 43.478 0.00 0.00 0.00 3.09
297 298 4.662145 CGCTGTAATTTTTGGGAGCTTAG 58.338 43.478 0.00 0.00 0.00 2.18
298 299 4.156008 CGCTGTAATTTTTGGGAGCTTAGT 59.844 41.667 0.00 0.00 0.00 2.24
299 300 5.353123 CGCTGTAATTTTTGGGAGCTTAGTA 59.647 40.000 0.00 0.00 0.00 1.82
300 301 6.128117 CGCTGTAATTTTTGGGAGCTTAGTAA 60.128 38.462 0.00 0.00 0.00 2.24
301 302 7.027760 GCTGTAATTTTTGGGAGCTTAGTAAC 58.972 38.462 0.00 0.00 0.00 2.50
302 303 7.094334 GCTGTAATTTTTGGGAGCTTAGTAACT 60.094 37.037 0.00 0.00 0.00 2.24
303 304 8.106247 TGTAATTTTTGGGAGCTTAGTAACTG 57.894 34.615 0.00 0.00 0.00 3.16
304 305 7.722285 TGTAATTTTTGGGAGCTTAGTAACTGT 59.278 33.333 0.00 0.00 0.00 3.55
305 306 9.223099 GTAATTTTTGGGAGCTTAGTAACTGTA 57.777 33.333 0.00 0.00 0.00 2.74
313 314 7.985184 TGGGAGCTTAGTAACTGTACAAATATG 59.015 37.037 0.00 0.00 32.12 1.78
327 328 9.337396 CTGTACAAATATGTATCCTGGCTTTTA 57.663 33.333 0.00 0.00 43.60 1.52
357 359 1.891919 TTCAGCGGTGCAGGTTGTC 60.892 57.895 10.38 0.00 0.00 3.18
408 413 5.469479 CAAAATGTATCTGAAACCCACACC 58.531 41.667 0.00 0.00 0.00 4.16
428 435 1.404986 CCCGATTAGTTCCAACTGCGA 60.405 52.381 2.01 0.00 40.07 5.10
429 436 1.659098 CCGATTAGTTCCAACTGCGAC 59.341 52.381 2.01 0.00 40.07 5.19
431 438 1.659098 GATTAGTTCCAACTGCGACGG 59.341 52.381 2.01 0.00 40.07 4.79
432 439 0.320073 TTAGTTCCAACTGCGACGGG 60.320 55.000 2.01 0.00 40.07 5.28
433 440 2.775032 TAGTTCCAACTGCGACGGGC 62.775 60.000 2.01 0.00 40.07 6.13
461 468 4.077188 GCAGTGCTCCGTTGCGTC 62.077 66.667 8.18 0.00 35.36 5.19
462 469 3.414700 CAGTGCTCCGTTGCGTCC 61.415 66.667 0.00 0.00 35.36 4.79
463 470 3.616721 AGTGCTCCGTTGCGTCCT 61.617 61.111 0.00 0.00 35.36 3.85
465 472 3.611674 TGCTCCGTTGCGTCCTGA 61.612 61.111 0.00 0.00 35.36 3.86
468 475 3.573772 CTCCGTTGCGTCCTGAGCA 62.574 63.158 0.00 0.00 43.59 4.26
602 3051 2.671396 CCAAGTAGAAACCGGATTCACG 59.329 50.000 24.45 8.87 0.00 4.35
612 3067 1.672854 CGGATTCACGGCCTCTACCA 61.673 60.000 0.00 0.00 0.00 3.25
685 3183 5.220892 CCTCAAGTACTGTTTTAAACCGCAA 60.221 40.000 5.32 0.00 0.00 4.85
721 3219 1.213537 CATCTGTTTGGCGCCAAGG 59.786 57.895 37.88 29.74 37.24 3.61
916 3442 3.639445 GAGAGCTCCATCCAGCCA 58.361 61.111 10.93 0.00 40.65 4.75
917 3443 1.446791 GAGAGCTCCATCCAGCCAG 59.553 63.158 10.93 0.00 40.65 4.85
918 3444 2.203181 GAGCTCCATCCAGCCAGC 60.203 66.667 0.87 0.00 40.65 4.85
919 3445 3.771110 GAGCTCCATCCAGCCAGCC 62.771 68.421 0.87 0.00 40.65 4.85
920 3446 4.119363 GCTCCATCCAGCCAGCCA 62.119 66.667 0.00 0.00 32.76 4.75
1035 3602 0.690744 TCCCCATGAGGCTCATCGAA 60.691 55.000 26.62 9.68 34.28 3.71
1098 3665 2.394563 GCTGCAGAAGAAGGCGTCC 61.395 63.158 20.43 0.00 0.00 4.79
1206 3776 1.002379 AGTGCTCGAGAGGTACCGT 60.002 57.895 18.75 0.00 0.00 4.83
1530 4106 3.443045 GGCGGCAACCACATGGAG 61.443 66.667 3.07 0.00 38.94 3.86
1715 4306 2.601562 CCGGCTACAATTACTCGGC 58.398 57.895 0.00 0.00 0.00 5.54
1716 4307 0.878961 CCGGCTACAATTACTCGGCC 60.879 60.000 0.00 0.00 36.60 6.13
1720 4311 1.213094 CTACAATTACTCGGCCGGCG 61.213 60.000 27.83 19.27 0.00 6.46
1721 4312 2.632136 TACAATTACTCGGCCGGCGG 62.632 60.000 27.83 26.86 0.00 6.13
1722 4313 3.777910 AATTACTCGGCCGGCGGT 61.778 61.111 30.32 24.32 0.00 5.68
1723 4314 4.524318 ATTACTCGGCCGGCGGTG 62.524 66.667 30.32 29.11 0.00 4.94
1737 4328 4.079090 GGTGACGAGATGCTCACG 57.921 61.111 0.00 0.00 38.15 4.35
1738 4329 2.161486 GGTGACGAGATGCTCACGC 61.161 63.158 0.00 0.00 38.15 5.34
1739 4330 1.153939 GTGACGAGATGCTCACGCT 60.154 57.895 0.00 0.00 33.83 5.07
1740 4331 0.098905 GTGACGAGATGCTCACGCTA 59.901 55.000 0.00 0.00 33.83 4.26
1741 4332 0.378610 TGACGAGATGCTCACGCTAG 59.621 55.000 0.00 0.00 33.83 3.42
1742 4333 0.317436 GACGAGATGCTCACGCTAGG 60.317 60.000 0.00 0.00 33.83 3.02
1743 4334 1.659954 CGAGATGCTCACGCTAGGC 60.660 63.158 0.00 0.00 36.97 3.93
1744 4335 1.300542 GAGATGCTCACGCTAGGCC 60.301 63.158 0.00 0.00 36.97 5.19
1745 4336 1.743321 GAGATGCTCACGCTAGGCCT 61.743 60.000 11.78 11.78 36.97 5.19
1746 4337 1.300542 GATGCTCACGCTAGGCCTC 60.301 63.158 9.68 0.00 36.97 4.70
1747 4338 3.144120 ATGCTCACGCTAGGCCTCG 62.144 63.158 9.68 11.16 36.97 4.63
1759 4350 3.667087 GCCTCGCCAATGTTGACA 58.333 55.556 0.00 0.00 0.00 3.58
1760 4351 1.956043 GCCTCGCCAATGTTGACAA 59.044 52.632 0.00 0.00 0.00 3.18
1761 4352 0.387239 GCCTCGCCAATGTTGACAAC 60.387 55.000 11.54 11.54 0.00 3.32
1762 4353 0.950836 CCTCGCCAATGTTGACAACA 59.049 50.000 22.61 22.61 46.94 3.33
1763 4354 1.069022 CCTCGCCAATGTTGACAACAG 60.069 52.381 24.25 13.22 45.95 3.16
1764 4355 0.310543 TCGCCAATGTTGACAACAGC 59.689 50.000 24.25 20.25 45.95 4.40
1765 4356 0.311790 CGCCAATGTTGACAACAGCT 59.688 50.000 24.25 12.52 45.95 4.24
1766 4357 1.535028 CGCCAATGTTGACAACAGCTA 59.465 47.619 24.25 2.95 45.95 3.32
1767 4358 2.665519 CGCCAATGTTGACAACAGCTAC 60.666 50.000 24.25 13.66 45.95 3.58
1768 4359 2.554032 GCCAATGTTGACAACAGCTACT 59.446 45.455 24.25 6.37 45.95 2.57
1769 4360 3.365364 GCCAATGTTGACAACAGCTACTC 60.365 47.826 24.25 9.08 45.95 2.59
1770 4361 3.120546 CCAATGTTGACAACAGCTACTCG 60.121 47.826 24.25 8.66 45.95 4.18
1771 4362 2.148916 TGTTGACAACAGCTACTCGG 57.851 50.000 17.02 0.00 36.25 4.63
1772 4363 1.270094 TGTTGACAACAGCTACTCGGG 60.270 52.381 17.02 0.00 36.25 5.14
1773 4364 0.320421 TTGACAACAGCTACTCGGGC 60.320 55.000 0.00 0.00 0.00 6.13
1774 4365 1.805945 GACAACAGCTACTCGGGCG 60.806 63.158 0.00 0.00 34.52 6.13
1775 4366 2.509336 CAACAGCTACTCGGGCGG 60.509 66.667 0.00 0.00 34.52 6.13
1776 4367 4.452733 AACAGCTACTCGGGCGGC 62.453 66.667 0.00 0.00 34.52 6.53
1791 4382 3.567797 GGCGGCGACAAGATGCTC 61.568 66.667 12.98 0.00 0.00 4.26
1795 4386 3.181967 GCGACAAGATGCTCGCGT 61.182 61.111 5.77 0.00 45.18 6.01
1906 4698 3.512516 GCGGCCACAAGATGCTCC 61.513 66.667 2.24 0.00 0.00 4.70
1909 4701 2.045926 GCCACAAGATGCTCCCGT 60.046 61.111 0.00 0.00 0.00 5.28
1947 4745 1.817447 GACTACAACTACTCGGGCAGT 59.183 52.381 0.00 0.00 39.41 4.40
1963 4761 2.181777 GTGGCGACGAGATGCTCA 59.818 61.111 0.00 0.00 0.00 4.26
1968 4766 2.583593 GACGAGATGCTCACGCCC 60.584 66.667 0.00 0.00 33.83 6.13
1990 4788 1.541147 GCTTTGGCAATGCTGACTACA 59.459 47.619 25.60 0.00 38.54 2.74
1996 4794 1.470098 GCAATGCTGACTACAACTGGG 59.530 52.381 0.00 0.00 0.00 4.45
2022 4820 3.338250 ACCATGTGGGCCACCGAT 61.338 61.111 32.61 18.41 42.05 4.18
2079 4895 1.919956 CTGACTTCGCCGACGGTACT 61.920 60.000 16.73 0.00 40.63 2.73
2080 4896 1.226239 GACTTCGCCGACGGTACTC 60.226 63.158 16.73 0.00 40.63 2.59
2081 4897 1.642952 GACTTCGCCGACGGTACTCT 61.643 60.000 16.73 0.00 40.63 3.24
2082 4898 1.226323 CTTCGCCGACGGTACTCTG 60.226 63.158 16.73 0.00 40.63 3.35
2083 4899 3.332493 TTCGCCGACGGTACTCTGC 62.332 63.158 16.73 0.00 40.63 4.26
2084 4900 4.849329 CGCCGACGGTACTCTGCC 62.849 72.222 16.73 0.00 34.97 4.85
2091 4907 3.537874 GGTACTCTGCCGCCCGAT 61.538 66.667 0.00 0.00 0.00 4.18
2092 4908 2.499685 GTACTCTGCCGCCCGATT 59.500 61.111 0.00 0.00 0.00 3.34
2093 4909 1.737816 GTACTCTGCCGCCCGATTA 59.262 57.895 0.00 0.00 0.00 1.75
2094 4910 0.596859 GTACTCTGCCGCCCGATTAC 60.597 60.000 0.00 0.00 0.00 1.89
2095 4911 0.754217 TACTCTGCCGCCCGATTACT 60.754 55.000 0.00 0.00 0.00 2.24
2096 4912 0.754217 ACTCTGCCGCCCGATTACTA 60.754 55.000 0.00 0.00 0.00 1.82
2102 4918 1.724929 CGCCCGATTACTACGCTCG 60.725 63.158 0.00 0.00 0.00 5.03
2112 4928 2.359107 TACGCTCGGGTCGTCACT 60.359 61.111 8.01 0.00 40.89 3.41
2114 4930 3.733960 CGCTCGGGTCGTCACTGA 61.734 66.667 0.00 0.00 0.00 3.41
2115 4931 2.649034 GCTCGGGTCGTCACTGAA 59.351 61.111 0.00 0.00 0.00 3.02
2116 4932 1.215647 GCTCGGGTCGTCACTGAAT 59.784 57.895 0.00 0.00 0.00 2.57
2159 4975 2.859525 ATCTGGCGGGTACGGGTACA 62.860 60.000 10.81 0.00 41.36 2.90
2235 5061 1.229428 CACTGGCATTCGACACAAGT 58.771 50.000 0.00 0.00 0.00 3.16
2270 5096 3.153735 GCGAAATGCAGTCGTAGTTTTC 58.846 45.455 20.02 9.14 45.45 2.29
2284 5116 8.189460 AGTCGTAGTTTTCGAGCTAGAATATTT 58.811 33.333 10.23 2.08 37.99 1.40
2285 5117 8.805688 GTCGTAGTTTTCGAGCTAGAATATTTT 58.194 33.333 10.23 0.00 37.99 1.82
2762 5927 8.223769 GTGTACATTACTTCTCTGTTGTCAATG 58.776 37.037 0.00 0.00 0.00 2.82
3072 6241 5.845985 ACTGTCGTTGAAATGAGTGTATG 57.154 39.130 0.00 0.00 0.00 2.39
3100 6269 6.154445 ACACATTTTGCAGATTCACTCATTC 58.846 36.000 0.00 0.00 0.00 2.67
3103 6272 5.787953 TTTTGCAGATTCACTCATTCCAA 57.212 34.783 0.00 0.00 0.00 3.53
3104 6273 5.988310 TTTGCAGATTCACTCATTCCAAT 57.012 34.783 0.00 0.00 0.00 3.16
3130 6299 9.554395 TGACAGTTGTAGAATCACTCATTTTAA 57.446 29.630 0.00 0.00 0.00 1.52
3149 6318 9.294030 CATTTTAATGACAGTTAATTCTGGAGC 57.706 33.333 0.00 0.00 38.70 4.70
3151 6320 2.346803 TGACAGTTAATTCTGGAGCGC 58.653 47.619 0.00 0.00 39.48 5.92
3182 6351 5.351465 ACATCTAATTGTGCACTAACCGAAG 59.649 40.000 19.41 8.70 0.00 3.79
3210 6547 0.400213 ATGCCCGTTGACTTCAGGAA 59.600 50.000 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.708544 TTAACTCCGCCCCCACCG 61.709 66.667 0.00 0.00 0.00 4.94
1 2 2.045634 GTTAACTCCGCCCCCACC 60.046 66.667 0.00 0.00 0.00 4.61
2 3 2.045634 GGTTAACTCCGCCCCCAC 60.046 66.667 5.42 0.00 0.00 4.61
5 6 0.108019 CATAGGGTTAACTCCGCCCC 59.892 60.000 0.61 0.00 43.32 5.80
6 7 1.125633 TCATAGGGTTAACTCCGCCC 58.874 55.000 0.61 0.00 42.64 6.13
7 8 3.487120 AATCATAGGGTTAACTCCGCC 57.513 47.619 0.61 0.00 0.00 6.13
8 9 3.985925 CGTAATCATAGGGTTAACTCCGC 59.014 47.826 0.61 0.00 0.00 5.54
9 10 5.443185 TCGTAATCATAGGGTTAACTCCG 57.557 43.478 0.61 0.00 0.00 4.63
10 11 7.270779 AGTTTCGTAATCATAGGGTTAACTCC 58.729 38.462 0.61 3.43 0.00 3.85
11 12 9.242477 GTAGTTTCGTAATCATAGGGTTAACTC 57.758 37.037 5.42 0.21 0.00 3.01
12 13 8.975295 AGTAGTTTCGTAATCATAGGGTTAACT 58.025 33.333 5.42 0.00 0.00 2.24
13 14 9.591792 AAGTAGTTTCGTAATCATAGGGTTAAC 57.408 33.333 0.00 0.00 0.00 2.01
14 15 9.807649 GAAGTAGTTTCGTAATCATAGGGTTAA 57.192 33.333 0.00 0.00 0.00 2.01
15 16 8.970020 TGAAGTAGTTTCGTAATCATAGGGTTA 58.030 33.333 0.00 0.00 38.71 2.85
16 17 7.763071 GTGAAGTAGTTTCGTAATCATAGGGTT 59.237 37.037 0.00 0.00 38.71 4.11
17 18 7.093640 TGTGAAGTAGTTTCGTAATCATAGGGT 60.094 37.037 0.00 0.00 38.71 4.34
18 19 7.262772 TGTGAAGTAGTTTCGTAATCATAGGG 58.737 38.462 0.00 0.00 38.71 3.53
19 20 8.188799 TCTGTGAAGTAGTTTCGTAATCATAGG 58.811 37.037 0.00 0.00 38.71 2.57
20 21 9.011407 GTCTGTGAAGTAGTTTCGTAATCATAG 57.989 37.037 0.00 0.00 38.71 2.23
21 22 7.695201 CGTCTGTGAAGTAGTTTCGTAATCATA 59.305 37.037 0.00 0.00 38.71 2.15
22 23 6.527023 CGTCTGTGAAGTAGTTTCGTAATCAT 59.473 38.462 0.00 0.00 38.71 2.45
23 24 5.854866 CGTCTGTGAAGTAGTTTCGTAATCA 59.145 40.000 0.00 0.00 38.71 2.57
24 25 5.219987 GCGTCTGTGAAGTAGTTTCGTAATC 60.220 44.000 0.00 0.00 38.71 1.75
25 26 4.620184 GCGTCTGTGAAGTAGTTTCGTAAT 59.380 41.667 0.00 0.00 38.71 1.89
26 27 3.976942 GCGTCTGTGAAGTAGTTTCGTAA 59.023 43.478 0.00 0.00 38.71 3.18
27 28 3.558505 GCGTCTGTGAAGTAGTTTCGTA 58.441 45.455 0.00 0.00 38.71 3.43
28 29 2.391879 GCGTCTGTGAAGTAGTTTCGT 58.608 47.619 0.00 0.00 38.71 3.85
29 30 1.719780 GGCGTCTGTGAAGTAGTTTCG 59.280 52.381 0.00 0.00 38.71 3.46
30 31 2.750948 TGGCGTCTGTGAAGTAGTTTC 58.249 47.619 0.00 0.00 36.29 2.78
31 32 2.902705 TGGCGTCTGTGAAGTAGTTT 57.097 45.000 0.00 0.00 0.00 2.66
32 33 3.402628 AATGGCGTCTGTGAAGTAGTT 57.597 42.857 0.00 0.00 0.00 2.24
33 34 3.067106 CAAATGGCGTCTGTGAAGTAGT 58.933 45.455 0.00 0.00 0.00 2.73
34 35 2.159653 GCAAATGGCGTCTGTGAAGTAG 60.160 50.000 0.00 0.00 0.00 2.57
35 36 1.804151 GCAAATGGCGTCTGTGAAGTA 59.196 47.619 0.00 0.00 0.00 2.24
36 37 0.593128 GCAAATGGCGTCTGTGAAGT 59.407 50.000 0.00 0.00 0.00 3.01
37 38 3.389741 GCAAATGGCGTCTGTGAAG 57.610 52.632 0.00 0.00 0.00 3.02
47 48 0.803380 GGATCGTGCAAGCAAATGGC 60.803 55.000 0.00 0.00 45.30 4.40
48 49 0.813184 AGGATCGTGCAAGCAAATGG 59.187 50.000 0.00 0.00 0.00 3.16
49 50 1.469703 TCAGGATCGTGCAAGCAAATG 59.530 47.619 10.58 0.00 0.00 2.32
50 51 1.741706 CTCAGGATCGTGCAAGCAAAT 59.258 47.619 10.58 0.00 0.00 2.32
51 52 1.159285 CTCAGGATCGTGCAAGCAAA 58.841 50.000 10.58 0.00 0.00 3.68
52 53 1.300971 GCTCAGGATCGTGCAAGCAA 61.301 55.000 18.87 0.00 0.00 3.91
53 54 1.742880 GCTCAGGATCGTGCAAGCA 60.743 57.895 18.87 0.00 0.00 3.91
54 55 2.467826 GGCTCAGGATCGTGCAAGC 61.468 63.158 16.65 16.65 0.00 4.01
55 56 2.169789 CGGCTCAGGATCGTGCAAG 61.170 63.158 10.58 5.27 0.00 4.01
56 57 1.960040 ATCGGCTCAGGATCGTGCAA 61.960 55.000 10.58 0.00 0.00 4.08
57 58 2.426406 ATCGGCTCAGGATCGTGCA 61.426 57.895 10.58 0.00 0.00 4.57
58 59 1.953138 CATCGGCTCAGGATCGTGC 60.953 63.158 10.58 0.00 0.00 5.34
59 60 1.953138 GCATCGGCTCAGGATCGTG 60.953 63.158 9.16 9.16 36.96 4.35
60 61 2.419198 GCATCGGCTCAGGATCGT 59.581 61.111 0.00 0.00 36.96 3.73
61 62 2.356793 GGCATCGGCTCAGGATCG 60.357 66.667 0.00 0.00 40.87 3.69
62 63 0.464373 TTTGGCATCGGCTCAGGATC 60.464 55.000 0.00 0.00 40.87 3.36
63 64 0.184451 ATTTGGCATCGGCTCAGGAT 59.816 50.000 0.00 0.00 40.87 3.24
64 65 0.464373 GATTTGGCATCGGCTCAGGA 60.464 55.000 0.00 0.00 40.87 3.86
65 66 1.450531 GGATTTGGCATCGGCTCAGG 61.451 60.000 0.00 0.00 40.87 3.86
66 67 0.749091 TGGATTTGGCATCGGCTCAG 60.749 55.000 0.00 0.00 40.87 3.35
67 68 0.323269 TTGGATTTGGCATCGGCTCA 60.323 50.000 0.00 0.00 40.87 4.26
68 69 0.101219 GTTGGATTTGGCATCGGCTC 59.899 55.000 0.00 0.00 40.87 4.70
69 70 0.611618 TGTTGGATTTGGCATCGGCT 60.612 50.000 0.00 0.00 40.87 5.52
70 71 0.246086 TTGTTGGATTTGGCATCGGC 59.754 50.000 0.00 0.00 40.13 5.54
71 72 1.545582 AGTTGTTGGATTTGGCATCGG 59.454 47.619 0.00 0.00 0.00 4.18
72 73 3.302365 AAGTTGTTGGATTTGGCATCG 57.698 42.857 0.00 0.00 0.00 3.84
73 74 4.687483 CAGAAAGTTGTTGGATTTGGCATC 59.313 41.667 0.00 0.00 0.00 3.91
74 75 4.101430 ACAGAAAGTTGTTGGATTTGGCAT 59.899 37.500 0.00 0.00 0.00 4.40
75 76 3.450457 ACAGAAAGTTGTTGGATTTGGCA 59.550 39.130 0.00 0.00 0.00 4.92
76 77 4.058721 ACAGAAAGTTGTTGGATTTGGC 57.941 40.909 0.00 0.00 0.00 4.52
77 78 6.142818 TGTACAGAAAGTTGTTGGATTTGG 57.857 37.500 0.00 0.00 32.56 3.28
78 79 7.169645 CCAATGTACAGAAAGTTGTTGGATTTG 59.830 37.037 13.09 2.21 37.14 2.32
79 80 7.209475 CCAATGTACAGAAAGTTGTTGGATTT 58.791 34.615 13.09 0.00 37.14 2.17
80 81 6.738453 GCCAATGTACAGAAAGTTGTTGGATT 60.738 38.462 19.81 0.00 37.14 3.01
81 82 5.278957 GCCAATGTACAGAAAGTTGTTGGAT 60.279 40.000 19.81 0.00 37.14 3.41
82 83 4.037446 GCCAATGTACAGAAAGTTGTTGGA 59.963 41.667 19.81 0.00 37.14 3.53
83 84 4.298332 GCCAATGTACAGAAAGTTGTTGG 58.702 43.478 13.78 13.78 37.60 3.77
84 85 3.974401 CGCCAATGTACAGAAAGTTGTTG 59.026 43.478 0.33 0.00 32.56 3.33
85 86 3.630312 ACGCCAATGTACAGAAAGTTGTT 59.370 39.130 0.33 0.00 32.56 2.83
86 87 3.211045 ACGCCAATGTACAGAAAGTTGT 58.789 40.909 0.33 0.00 35.09 3.32
87 88 3.498397 AGACGCCAATGTACAGAAAGTTG 59.502 43.478 0.33 0.19 0.00 3.16
88 89 3.740115 AGACGCCAATGTACAGAAAGTT 58.260 40.909 0.33 0.00 0.00 2.66
89 90 3.402628 AGACGCCAATGTACAGAAAGT 57.597 42.857 0.33 0.00 0.00 2.66
90 91 3.745975 TCAAGACGCCAATGTACAGAAAG 59.254 43.478 0.33 0.00 0.00 2.62
91 92 3.734463 TCAAGACGCCAATGTACAGAAA 58.266 40.909 0.33 0.00 0.00 2.52
92 93 3.394674 TCAAGACGCCAATGTACAGAA 57.605 42.857 0.33 0.00 0.00 3.02
93 94 3.394674 TTCAAGACGCCAATGTACAGA 57.605 42.857 0.33 0.00 0.00 3.41
94 95 3.181507 CCATTCAAGACGCCAATGTACAG 60.182 47.826 0.33 0.00 0.00 2.74
95 96 2.746904 CCATTCAAGACGCCAATGTACA 59.253 45.455 0.00 0.00 0.00 2.90
96 97 3.006940 TCCATTCAAGACGCCAATGTAC 58.993 45.455 0.00 0.00 0.00 2.90
97 98 3.342377 TCCATTCAAGACGCCAATGTA 57.658 42.857 0.00 0.00 0.00 2.29
98 99 2.198827 TCCATTCAAGACGCCAATGT 57.801 45.000 0.00 0.00 0.00 2.71
99 100 2.223641 CCATCCATTCAAGACGCCAATG 60.224 50.000 0.00 0.00 0.00 2.82
100 101 2.026641 CCATCCATTCAAGACGCCAAT 58.973 47.619 0.00 0.00 0.00 3.16
101 102 1.271871 ACCATCCATTCAAGACGCCAA 60.272 47.619 0.00 0.00 0.00 4.52
102 103 0.327924 ACCATCCATTCAAGACGCCA 59.672 50.000 0.00 0.00 0.00 5.69
103 104 0.734889 CACCATCCATTCAAGACGCC 59.265 55.000 0.00 0.00 0.00 5.68
104 105 1.131126 CACACCATCCATTCAAGACGC 59.869 52.381 0.00 0.00 0.00 5.19
105 106 2.674852 CTCACACCATCCATTCAAGACG 59.325 50.000 0.00 0.00 0.00 4.18
106 107 3.942829 TCTCACACCATCCATTCAAGAC 58.057 45.455 0.00 0.00 0.00 3.01
107 108 4.520179 CATCTCACACCATCCATTCAAGA 58.480 43.478 0.00 0.00 0.00 3.02
108 109 3.630769 CCATCTCACACCATCCATTCAAG 59.369 47.826 0.00 0.00 0.00 3.02
109 110 3.266513 TCCATCTCACACCATCCATTCAA 59.733 43.478 0.00 0.00 0.00 2.69
110 111 2.845586 TCCATCTCACACCATCCATTCA 59.154 45.455 0.00 0.00 0.00 2.57
111 112 3.118112 ACTCCATCTCACACCATCCATTC 60.118 47.826 0.00 0.00 0.00 2.67
112 113 2.848694 ACTCCATCTCACACCATCCATT 59.151 45.455 0.00 0.00 0.00 3.16
113 114 2.172082 CACTCCATCTCACACCATCCAT 59.828 50.000 0.00 0.00 0.00 3.41
114 115 1.556451 CACTCCATCTCACACCATCCA 59.444 52.381 0.00 0.00 0.00 3.41
115 116 1.556911 ACACTCCATCTCACACCATCC 59.443 52.381 0.00 0.00 0.00 3.51
116 117 2.736719 CGACACTCCATCTCACACCATC 60.737 54.545 0.00 0.00 0.00 3.51
117 118 1.205655 CGACACTCCATCTCACACCAT 59.794 52.381 0.00 0.00 0.00 3.55
118 119 0.603065 CGACACTCCATCTCACACCA 59.397 55.000 0.00 0.00 0.00 4.17
119 120 0.603569 ACGACACTCCATCTCACACC 59.396 55.000 0.00 0.00 0.00 4.16
120 121 1.702886 CACGACACTCCATCTCACAC 58.297 55.000 0.00 0.00 0.00 3.82
121 122 0.038251 GCACGACACTCCATCTCACA 60.038 55.000 0.00 0.00 0.00 3.58
122 123 0.244994 AGCACGACACTCCATCTCAC 59.755 55.000 0.00 0.00 0.00 3.51
123 124 0.244721 CAGCACGACACTCCATCTCA 59.755 55.000 0.00 0.00 0.00 3.27
124 125 0.528017 TCAGCACGACACTCCATCTC 59.472 55.000 0.00 0.00 0.00 2.75
125 126 0.969149 TTCAGCACGACACTCCATCT 59.031 50.000 0.00 0.00 0.00 2.90
126 127 1.795768 TTTCAGCACGACACTCCATC 58.204 50.000 0.00 0.00 0.00 3.51
127 128 2.350522 GATTTCAGCACGACACTCCAT 58.649 47.619 0.00 0.00 0.00 3.41
128 129 1.795768 GATTTCAGCACGACACTCCA 58.204 50.000 0.00 0.00 0.00 3.86
129 130 0.716108 CGATTTCAGCACGACACTCC 59.284 55.000 0.00 0.00 0.00 3.85
130 131 1.419374 ACGATTTCAGCACGACACTC 58.581 50.000 0.00 0.00 0.00 3.51
131 132 2.717580 TACGATTTCAGCACGACACT 57.282 45.000 0.00 0.00 0.00 3.55
132 133 2.666508 ACATACGATTTCAGCACGACAC 59.333 45.455 0.00 0.00 0.00 3.67
133 134 2.666022 CACATACGATTTCAGCACGACA 59.334 45.455 0.00 0.00 0.00 4.35
134 135 2.921121 TCACATACGATTTCAGCACGAC 59.079 45.455 0.00 0.00 0.00 4.34
135 136 3.224884 TCACATACGATTTCAGCACGA 57.775 42.857 0.00 0.00 0.00 4.35
136 137 3.989705 TTCACATACGATTTCAGCACG 57.010 42.857 0.00 0.00 0.00 5.34
137 138 6.074302 ACGATATTCACATACGATTTCAGCAC 60.074 38.462 0.00 0.00 0.00 4.40
138 139 5.983118 ACGATATTCACATACGATTTCAGCA 59.017 36.000 0.00 0.00 0.00 4.41
139 140 6.363626 AGACGATATTCACATACGATTTCAGC 59.636 38.462 0.00 0.00 0.00 4.26
140 141 7.379797 ACAGACGATATTCACATACGATTTCAG 59.620 37.037 0.00 0.00 0.00 3.02
141 142 7.200455 ACAGACGATATTCACATACGATTTCA 58.800 34.615 0.00 0.00 0.00 2.69
142 143 7.624706 ACAGACGATATTCACATACGATTTC 57.375 36.000 0.00 0.00 0.00 2.17
144 145 9.989869 CTATACAGACGATATTCACATACGATT 57.010 33.333 0.00 0.00 0.00 3.34
145 146 8.123575 GCTATACAGACGATATTCACATACGAT 58.876 37.037 0.00 0.00 0.00 3.73
146 147 7.118680 TGCTATACAGACGATATTCACATACGA 59.881 37.037 0.00 0.00 0.00 3.43
147 148 7.241376 TGCTATACAGACGATATTCACATACG 58.759 38.462 0.00 0.00 0.00 3.06
164 165 5.468540 CAGCCCTGTATTACTGCTATACA 57.531 43.478 5.99 0.00 36.42 2.29
171 172 2.283298 CTGTGCAGCCCTGTATTACTG 58.717 52.381 0.00 0.00 0.00 2.74
172 173 1.210478 CCTGTGCAGCCCTGTATTACT 59.790 52.381 0.00 0.00 0.00 2.24
173 174 1.668419 CCTGTGCAGCCCTGTATTAC 58.332 55.000 0.00 0.00 0.00 1.89
174 175 0.546122 CCCTGTGCAGCCCTGTATTA 59.454 55.000 0.00 0.00 0.00 0.98
175 176 1.207488 TCCCTGTGCAGCCCTGTATT 61.207 55.000 0.00 0.00 0.00 1.89
176 177 1.616327 TCCCTGTGCAGCCCTGTAT 60.616 57.895 0.00 0.00 0.00 2.29
177 178 2.203922 TCCCTGTGCAGCCCTGTA 60.204 61.111 0.00 0.00 0.00 2.74
178 179 3.644606 CTCCCTGTGCAGCCCTGT 61.645 66.667 0.00 0.00 0.00 4.00
179 180 4.421515 CCTCCCTGTGCAGCCCTG 62.422 72.222 0.00 0.00 0.00 4.45
180 181 4.990910 ACCTCCCTGTGCAGCCCT 62.991 66.667 0.00 0.00 0.00 5.19
181 182 4.729918 CACCTCCCTGTGCAGCCC 62.730 72.222 0.00 0.00 0.00 5.19
187 188 1.270414 ATCTCCAGCACCTCCCTGTG 61.270 60.000 0.00 0.00 39.29 3.66
188 189 0.339859 TATCTCCAGCACCTCCCTGT 59.660 55.000 0.00 0.00 0.00 4.00
189 190 1.415659 CTTATCTCCAGCACCTCCCTG 59.584 57.143 0.00 0.00 0.00 4.45
190 191 1.292242 TCTTATCTCCAGCACCTCCCT 59.708 52.381 0.00 0.00 0.00 4.20
191 192 1.794714 TCTTATCTCCAGCACCTCCC 58.205 55.000 0.00 0.00 0.00 4.30
192 193 3.432890 CCTTTCTTATCTCCAGCACCTCC 60.433 52.174 0.00 0.00 0.00 4.30
193 194 3.452627 TCCTTTCTTATCTCCAGCACCTC 59.547 47.826 0.00 0.00 0.00 3.85
194 195 3.454858 TCCTTTCTTATCTCCAGCACCT 58.545 45.455 0.00 0.00 0.00 4.00
195 196 3.914426 TCCTTTCTTATCTCCAGCACC 57.086 47.619 0.00 0.00 0.00 5.01
196 197 3.625313 GCTTCCTTTCTTATCTCCAGCAC 59.375 47.826 0.00 0.00 0.00 4.40
197 198 3.370953 GGCTTCCTTTCTTATCTCCAGCA 60.371 47.826 0.00 0.00 0.00 4.41
198 199 3.210227 GGCTTCCTTTCTTATCTCCAGC 58.790 50.000 0.00 0.00 0.00 4.85
199 200 4.195416 GTGGCTTCCTTTCTTATCTCCAG 58.805 47.826 0.00 0.00 0.00 3.86
200 201 3.369471 CGTGGCTTCCTTTCTTATCTCCA 60.369 47.826 0.00 0.00 0.00 3.86
201 202 3.198872 CGTGGCTTCCTTTCTTATCTCC 58.801 50.000 0.00 0.00 0.00 3.71
202 203 2.609916 GCGTGGCTTCCTTTCTTATCTC 59.390 50.000 0.00 0.00 0.00 2.75
203 204 2.633488 GCGTGGCTTCCTTTCTTATCT 58.367 47.619 0.00 0.00 0.00 1.98
204 205 1.671328 GGCGTGGCTTCCTTTCTTATC 59.329 52.381 0.00 0.00 0.00 1.75
205 206 1.282157 AGGCGTGGCTTCCTTTCTTAT 59.718 47.619 0.00 0.00 0.00 1.73
206 207 0.690762 AGGCGTGGCTTCCTTTCTTA 59.309 50.000 0.00 0.00 0.00 2.10
207 208 0.606673 GAGGCGTGGCTTCCTTTCTT 60.607 55.000 0.00 0.00 31.71 2.52
208 209 1.003233 GAGGCGTGGCTTCCTTTCT 60.003 57.895 0.00 0.00 31.71 2.52
209 210 0.889186 TTGAGGCGTGGCTTCCTTTC 60.889 55.000 0.00 0.00 33.61 2.62
210 211 1.150536 TTGAGGCGTGGCTTCCTTT 59.849 52.632 0.00 0.00 33.61 3.11
211 212 1.600916 GTTGAGGCGTGGCTTCCTT 60.601 57.895 0.00 0.00 33.61 3.36
212 213 2.032681 GTTGAGGCGTGGCTTCCT 59.967 61.111 0.00 0.00 33.61 3.36
213 214 3.056328 GGTTGAGGCGTGGCTTCC 61.056 66.667 0.00 0.00 33.61 3.46
214 215 1.172812 AAAGGTTGAGGCGTGGCTTC 61.173 55.000 0.00 0.00 35.17 3.86
215 216 1.152756 AAAGGTTGAGGCGTGGCTT 60.153 52.632 0.00 0.00 0.00 4.35
216 217 1.600916 GAAAGGTTGAGGCGTGGCT 60.601 57.895 0.00 0.00 0.00 4.75
217 218 2.626780 GGAAAGGTTGAGGCGTGGC 61.627 63.158 0.00 0.00 0.00 5.01
218 219 1.971695 GGGAAAGGTTGAGGCGTGG 60.972 63.158 0.00 0.00 0.00 4.94
219 220 0.323629 TAGGGAAAGGTTGAGGCGTG 59.676 55.000 0.00 0.00 0.00 5.34
220 221 1.061546 TTAGGGAAAGGTTGAGGCGT 58.938 50.000 0.00 0.00 0.00 5.68
221 222 1.271163 TGTTAGGGAAAGGTTGAGGCG 60.271 52.381 0.00 0.00 0.00 5.52
222 223 2.579410 TGTTAGGGAAAGGTTGAGGC 57.421 50.000 0.00 0.00 0.00 4.70
223 224 4.220602 CCATTTGTTAGGGAAAGGTTGAGG 59.779 45.833 0.00 0.00 0.00 3.86
224 225 5.391312 CCATTTGTTAGGGAAAGGTTGAG 57.609 43.478 0.00 0.00 0.00 3.02
235 236 1.847328 GGTGGACCCCATTTGTTAGG 58.153 55.000 0.00 0.00 35.28 2.69
262 263 0.109723 TACAGCGCTCCTGGGTTTTT 59.890 50.000 7.13 0.00 46.14 1.94
263 264 0.109723 TTACAGCGCTCCTGGGTTTT 59.890 50.000 7.13 0.00 46.14 2.43
264 265 0.328258 ATTACAGCGCTCCTGGGTTT 59.672 50.000 7.13 0.00 46.14 3.27
265 266 0.328258 AATTACAGCGCTCCTGGGTT 59.672 50.000 7.13 0.00 46.14 4.11
266 267 0.328258 AAATTACAGCGCTCCTGGGT 59.672 50.000 7.13 4.40 46.14 4.51
267 268 1.463674 AAAATTACAGCGCTCCTGGG 58.536 50.000 7.13 0.00 46.14 4.45
268 269 2.415893 CCAAAAATTACAGCGCTCCTGG 60.416 50.000 7.13 0.00 46.14 4.45
270 271 1.818674 CCCAAAAATTACAGCGCTCCT 59.181 47.619 7.13 0.00 0.00 3.69
271 272 1.816224 TCCCAAAAATTACAGCGCTCC 59.184 47.619 7.13 0.00 0.00 4.70
272 273 2.732282 GCTCCCAAAAATTACAGCGCTC 60.732 50.000 7.13 0.00 0.00 5.03
273 274 1.202348 GCTCCCAAAAATTACAGCGCT 59.798 47.619 2.64 2.64 0.00 5.92
274 275 1.202348 AGCTCCCAAAAATTACAGCGC 59.798 47.619 0.00 0.00 31.93 5.92
275 276 3.575965 AAGCTCCCAAAAATTACAGCG 57.424 42.857 0.00 0.00 31.93 5.18
276 277 5.644977 ACTAAGCTCCCAAAAATTACAGC 57.355 39.130 0.00 0.00 0.00 4.40
277 278 8.237267 CAGTTACTAAGCTCCCAAAAATTACAG 58.763 37.037 0.00 0.00 0.00 2.74
278 279 7.722285 ACAGTTACTAAGCTCCCAAAAATTACA 59.278 33.333 0.00 0.00 0.00 2.41
279 280 8.107399 ACAGTTACTAAGCTCCCAAAAATTAC 57.893 34.615 0.00 0.00 0.00 1.89
280 281 9.223099 GTACAGTTACTAAGCTCCCAAAAATTA 57.777 33.333 0.00 0.00 0.00 1.40
281 282 7.722285 TGTACAGTTACTAAGCTCCCAAAAATT 59.278 33.333 0.00 0.00 0.00 1.82
282 283 7.228590 TGTACAGTTACTAAGCTCCCAAAAAT 58.771 34.615 0.00 0.00 0.00 1.82
283 284 6.593807 TGTACAGTTACTAAGCTCCCAAAAA 58.406 36.000 0.00 0.00 0.00 1.94
284 285 6.177310 TGTACAGTTACTAAGCTCCCAAAA 57.823 37.500 0.00 0.00 0.00 2.44
285 286 5.811796 TGTACAGTTACTAAGCTCCCAAA 57.188 39.130 0.00 0.00 0.00 3.28
286 287 5.811796 TTGTACAGTTACTAAGCTCCCAA 57.188 39.130 0.00 0.00 0.00 4.12
287 288 5.811796 TTTGTACAGTTACTAAGCTCCCA 57.188 39.130 0.00 0.00 0.00 4.37
288 289 7.985752 ACATATTTGTACAGTTACTAAGCTCCC 59.014 37.037 0.00 0.00 33.16 4.30
289 290 8.943909 ACATATTTGTACAGTTACTAAGCTCC 57.056 34.615 0.00 0.00 33.16 4.70
296 297 7.931948 GCCAGGATACATATTTGTACAGTTACT 59.068 37.037 0.00 0.00 41.02 2.24
297 298 7.931948 AGCCAGGATACATATTTGTACAGTTAC 59.068 37.037 0.00 0.00 41.02 2.50
298 299 8.029782 AGCCAGGATACATATTTGTACAGTTA 57.970 34.615 0.00 0.00 41.02 2.24
299 300 6.900194 AGCCAGGATACATATTTGTACAGTT 58.100 36.000 0.00 0.00 41.02 3.16
300 301 6.500589 AGCCAGGATACATATTTGTACAGT 57.499 37.500 0.00 0.00 41.02 3.55
301 302 7.807977 AAAGCCAGGATACATATTTGTACAG 57.192 36.000 0.00 0.00 41.02 2.74
302 303 9.116067 GTAAAAGCCAGGATACATATTTGTACA 57.884 33.333 0.00 0.00 41.02 2.90
303 304 9.338622 AGTAAAAGCCAGGATACATATTTGTAC 57.661 33.333 0.00 0.00 41.02 2.90
304 305 9.914834 AAGTAAAAGCCAGGATACATATTTGTA 57.085 29.630 0.00 0.00 42.35 2.41
305 306 8.686334 CAAGTAAAAGCCAGGATACATATTTGT 58.314 33.333 0.00 0.00 39.98 2.83
313 314 3.128764 GCACCAAGTAAAAGCCAGGATAC 59.871 47.826 0.00 0.00 0.00 2.24
357 359 1.071385 AGAGTTCAGTGAACCTGCTGG 59.929 52.381 28.29 8.29 42.85 4.85
408 413 1.006832 CGCAGTTGGAACTAATCGGG 58.993 55.000 0.00 0.00 37.08 5.14
551 584 0.749454 GCGGCATCATTGAGGAGGTT 60.749 55.000 1.83 0.00 0.00 3.50
602 3051 1.249407 CGGAGATACTGGTAGAGGCC 58.751 60.000 0.00 0.00 0.00 5.19
612 3067 6.149142 GTGATTATAACGACTCCGGAGATACT 59.851 42.308 37.69 17.52 40.78 2.12
685 3183 1.489481 TGATGCTGTAGGCTGCTAGT 58.511 50.000 3.77 0.00 42.39 2.57
706 3204 3.562779 CTGCCTTGGCGCCAAACAG 62.563 63.158 37.42 37.42 35.41 3.16
721 3219 2.286294 CCGTAATCTTGCATCAGTCTGC 59.714 50.000 0.00 0.00 42.62 4.26
848 3367 3.482783 GCGACGCAGGCTTCTGTC 61.483 66.667 16.42 0.00 40.51 3.51
916 3442 3.308705 GCTTGGCTTGGCTTGGCT 61.309 61.111 5.64 0.00 0.00 4.75
917 3443 4.383861 GGCTTGGCTTGGCTTGGC 62.384 66.667 0.00 0.00 0.00 4.52
918 3444 2.444700 CTTGGCTTGGCTTGGCTTGG 62.445 60.000 5.64 0.00 0.00 3.61
919 3445 1.005394 CTTGGCTTGGCTTGGCTTG 60.005 57.895 5.64 0.00 0.00 4.01
920 3446 2.875804 GCTTGGCTTGGCTTGGCTT 61.876 57.895 5.64 0.00 0.00 4.35
1338 3908 2.371923 CGTCATGTCGTTGAGCGCA 61.372 57.895 11.47 0.00 41.07 6.09
1403 3973 1.613630 ATCCTGTCTCCCGTGGCTT 60.614 57.895 0.00 0.00 0.00 4.35
1404 3974 2.039624 ATCCTGTCTCCCGTGGCT 59.960 61.111 0.00 0.00 0.00 4.75
1700 4291 1.496403 GCCGGCCGAGTAATTGTAGC 61.496 60.000 30.73 13.82 0.00 3.58
1704 4295 3.269347 CCGCCGGCCGAGTAATTG 61.269 66.667 30.73 9.14 40.02 2.32
1716 4307 4.498520 AGCATCTCGTCACCGCCG 62.499 66.667 0.00 0.00 0.00 6.46
1720 4311 4.079090 CGTGAGCATCTCGTCACC 57.921 61.111 0.00 0.00 45.94 4.02
1732 4323 4.577246 GGCGAGGCCTAGCGTGAG 62.577 72.222 28.57 5.81 46.69 3.51
1742 4333 0.387239 GTTGTCAACATTGGCGAGGC 60.387 55.000 10.93 0.00 35.00 4.70
1743 4334 0.950836 TGTTGTCAACATTGGCGAGG 59.049 50.000 14.48 0.00 36.25 4.63
1744 4335 1.664016 GCTGTTGTCAACATTGGCGAG 60.664 52.381 18.49 6.67 41.26 5.03
1745 4336 0.310543 GCTGTTGTCAACATTGGCGA 59.689 50.000 18.49 0.00 41.26 5.54
1746 4337 0.311790 AGCTGTTGTCAACATTGGCG 59.688 50.000 18.49 8.04 41.26 5.69
1747 4338 2.554032 AGTAGCTGTTGTCAACATTGGC 59.446 45.455 18.49 17.44 41.26 4.52
1748 4339 3.120546 CGAGTAGCTGTTGTCAACATTGG 60.121 47.826 18.49 8.74 41.26 3.16
1749 4340 3.120546 CCGAGTAGCTGTTGTCAACATTG 60.121 47.826 18.49 9.43 41.26 2.82
1750 4341 3.067106 CCGAGTAGCTGTTGTCAACATT 58.933 45.455 18.49 12.32 41.26 2.71
1751 4342 2.612972 CCCGAGTAGCTGTTGTCAACAT 60.613 50.000 18.49 7.86 41.26 2.71
1752 4343 1.270094 CCCGAGTAGCTGTTGTCAACA 60.270 52.381 17.29 17.29 39.52 3.33
1753 4344 1.429463 CCCGAGTAGCTGTTGTCAAC 58.571 55.000 8.86 8.86 0.00 3.18
1754 4345 0.320421 GCCCGAGTAGCTGTTGTCAA 60.320 55.000 0.00 0.00 0.00 3.18
1755 4346 1.292223 GCCCGAGTAGCTGTTGTCA 59.708 57.895 0.00 0.00 0.00 3.58
1756 4347 1.805945 CGCCCGAGTAGCTGTTGTC 60.806 63.158 0.00 0.00 0.00 3.18
1757 4348 2.261671 CGCCCGAGTAGCTGTTGT 59.738 61.111 0.00 0.00 0.00 3.32
1758 4349 2.509336 CCGCCCGAGTAGCTGTTG 60.509 66.667 0.00 0.00 0.00 3.33
1759 4350 4.452733 GCCGCCCGAGTAGCTGTT 62.453 66.667 0.00 0.00 0.00 3.16
1774 4365 3.567797 GAGCATCTTGTCGCCGCC 61.568 66.667 0.00 0.00 0.00 6.13
1775 4366 3.918220 CGAGCATCTTGTCGCCGC 61.918 66.667 0.00 0.00 0.00 6.53
1810 4401 2.089980 GGCCGAGTAGTTGTAGTCAGA 58.910 52.381 0.00 0.00 0.00 3.27
1894 4686 1.811266 CCGACGGGAGCATCTTGTG 60.811 63.158 5.81 0.00 34.06 3.33
1947 4745 2.181777 GTGAGCATCTCGTCGCCA 59.818 61.111 0.00 0.00 34.92 5.69
1968 4766 1.444895 GTCAGCATTGCCAAAGCCG 60.445 57.895 4.70 0.00 38.69 5.52
1990 4788 1.064906 CATGGTCAGATCAGCCCAGTT 60.065 52.381 0.00 0.00 0.00 3.16
1996 4794 1.099879 GCCCACATGGTCAGATCAGC 61.100 60.000 0.00 0.00 36.04 4.26
2022 4820 0.249826 TGACTGCATCGCACAACTCA 60.250 50.000 0.00 0.00 33.79 3.41
2079 4895 1.737816 GTAGTAATCGGGCGGCAGA 59.262 57.895 15.08 15.08 0.00 4.26
2080 4896 1.660575 CGTAGTAATCGGGCGGCAG 60.661 63.158 12.47 7.15 0.00 4.85
2081 4897 2.414179 CGTAGTAATCGGGCGGCA 59.586 61.111 12.47 0.00 0.00 5.69
2082 4898 3.034343 GCGTAGTAATCGGGCGGC 61.034 66.667 0.00 0.00 0.00 6.53
2083 4899 1.371389 GAGCGTAGTAATCGGGCGG 60.371 63.158 0.00 0.00 0.00 6.13
2084 4900 1.724929 CGAGCGTAGTAATCGGGCG 60.725 63.158 0.00 0.00 32.93 6.13
2085 4901 4.223514 CGAGCGTAGTAATCGGGC 57.776 61.111 0.00 0.00 32.93 6.13
2088 4904 0.383983 CGACCCGAGCGTAGTAATCG 60.384 60.000 0.00 0.00 36.24 3.34
2089 4905 0.659957 ACGACCCGAGCGTAGTAATC 59.340 55.000 0.00 0.00 40.65 1.75
2090 4906 0.659957 GACGACCCGAGCGTAGTAAT 59.340 55.000 0.00 0.00 42.77 1.89
2091 4907 0.673333 TGACGACCCGAGCGTAGTAA 60.673 55.000 0.00 0.00 42.77 2.24
2092 4908 1.079197 TGACGACCCGAGCGTAGTA 60.079 57.895 0.00 0.00 42.77 1.82
2093 4909 2.359107 TGACGACCCGAGCGTAGT 60.359 61.111 0.00 0.00 42.77 2.73
2094 4910 2.099831 GTGACGACCCGAGCGTAG 59.900 66.667 0.00 0.00 42.77 3.51
2095 4911 2.359107 AGTGACGACCCGAGCGTA 60.359 61.111 0.00 0.00 42.77 4.42
2096 4912 4.039357 CAGTGACGACCCGAGCGT 62.039 66.667 0.00 0.00 45.79 5.07
2102 4918 1.078426 CCCCATTCAGTGACGACCC 60.078 63.158 0.00 0.00 0.00 4.46
2235 5061 3.521560 CATTTCGCCTAGCAACAGACTA 58.478 45.455 0.00 0.00 0.00 2.59
2446 5337 3.181511 TGAACTTTGTGAACTGTGAAGCG 60.182 43.478 0.00 0.00 0.00 4.68
2578 5480 9.575868 TGGACAAAGATATAACAAAAGGTTACA 57.424 29.630 0.00 0.00 44.36 2.41
2762 5927 7.092716 ACTGATAATGAAAATGCAACCTTCAC 58.907 34.615 9.79 0.91 32.19 3.18
3072 6241 6.073058 TGAGTGAATCTGCAAAATGTGTCTAC 60.073 38.462 0.00 0.00 0.00 2.59
3086 6255 5.646793 ACTGTCATTGGAATGAGTGAATCTG 59.353 40.000 2.20 0.00 45.38 2.90
3100 6269 5.934043 TGAGTGATTCTACAACTGTCATTGG 59.066 40.000 0.00 0.00 33.63 3.16
3103 6272 8.627208 AAAATGAGTGATTCTACAACTGTCAT 57.373 30.769 0.00 0.00 0.00 3.06
3104 6273 9.554395 TTAAAATGAGTGATTCTACAACTGTCA 57.446 29.630 0.00 0.00 0.00 3.58
3130 6299 2.939103 GCGCTCCAGAATTAACTGTCAT 59.061 45.455 0.00 0.00 36.30 3.06
3149 6318 3.181774 GCACAATTAGATGTACTACCGCG 59.818 47.826 0.00 0.00 30.84 6.46
3151 6320 5.348986 AGTGCACAATTAGATGTACTACCG 58.651 41.667 21.04 0.00 39.61 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.