Multiple sequence alignment - TraesCS7D01G387700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G387700 chr7D 100.000 2369 0 0 1 2369 501598949 501601317 0.000000e+00 4375.0
1 TraesCS7D01G387700 chr7D 88.600 807 59 23 685 1470 501778203 501777409 0.000000e+00 950.0
2 TraesCS7D01G387700 chr7D 88.584 692 33 28 690 1349 501610358 501609681 0.000000e+00 798.0
3 TraesCS7D01G387700 chr7D 90.211 521 37 6 2 512 146983113 146982597 0.000000e+00 667.0
4 TraesCS7D01G387700 chr7D 87.681 276 26 4 1667 1936 501776740 501776467 4.920000e-82 315.0
5 TraesCS7D01G387700 chr7D 94.000 150 5 4 1518 1667 501777409 501777264 8.520000e-55 224.0
6 TraesCS7D01G387700 chr7D 92.647 68 5 0 611 678 501599077 501599144 5.390000e-17 99.0
7 TraesCS7D01G387700 chr7D 82.883 111 15 2 2110 2217 501776275 501776166 1.940000e-16 97.1
8 TraesCS7D01G387700 chr7A 87.592 1225 72 43 694 1876 569112860 569111674 0.000000e+00 1347.0
9 TraesCS7D01G387700 chr7A 88.902 856 47 16 789 1613 568129597 568130435 0.000000e+00 1011.0
10 TraesCS7D01G387700 chr7A 93.810 517 29 2 975 1491 568579791 568580304 0.000000e+00 774.0
11 TraesCS7D01G387700 chr7A 87.157 693 39 24 694 1357 568696026 568695355 0.000000e+00 741.0
12 TraesCS7D01G387700 chr7A 90.769 325 18 8 1527 1845 568580300 568580618 7.830000e-115 424.0
13 TraesCS7D01G387700 chr7A 91.589 214 9 6 1640 1845 568130432 568130644 1.070000e-73 287.0
14 TraesCS7D01G387700 chr7A 90.286 175 6 7 758 925 568579313 568579483 3.960000e-53 219.0
15 TraesCS7D01G387700 chr7A 87.179 117 12 3 2103 2218 568130747 568130861 1.910000e-26 130.0
16 TraesCS7D01G387700 chr7A 87.179 117 12 3 2103 2218 568580721 568580835 1.910000e-26 130.0
17 TraesCS7D01G387700 chr7A 80.952 126 15 6 1960 2085 186540740 186540624 9.020000e-15 91.6
18 TraesCS7D01G387700 chr7B 89.375 960 51 29 711 1652 531179848 531180774 0.000000e+00 1160.0
19 TraesCS7D01G387700 chr7B 84.845 772 60 35 690 1419 531222695 531221939 0.000000e+00 725.0
20 TraesCS7D01G387700 chr7B 81.771 768 78 42 701 1419 530869581 530870335 9.430000e-164 586.0
21 TraesCS7D01G387700 chr6A 93.110 508 31 4 1 507 516163175 516163679 0.000000e+00 741.0
22 TraesCS7D01G387700 chr6A 96.970 33 1 0 2059 2091 29293146 29293114 3.290000e-04 56.5
23 TraesCS7D01G387700 chr3D 92.235 528 19 8 1 507 47339399 47338873 0.000000e+00 728.0
24 TraesCS7D01G387700 chr3D 90.892 527 27 8 1 507 335200194 335200719 0.000000e+00 688.0
25 TraesCS7D01G387700 chr3D 91.176 68 6 0 611 678 47339271 47339204 2.510000e-15 93.5
26 TraesCS7D01G387700 chr3D 88.235 68 7 1 611 678 455552553 455552487 1.950000e-11 80.5
27 TraesCS7D01G387700 chr3D 100.000 28 0 0 2067 2094 447571862 447571835 4.000000e-03 52.8
28 TraesCS7D01G387700 chrUn 91.555 521 30 9 1 510 96337089 96337606 0.000000e+00 706.0
29 TraesCS7D01G387700 chr1D 91.313 518 30 8 1 507 251850479 251849966 0.000000e+00 693.0
30 TraesCS7D01G387700 chr1D 89.706 68 7 0 611 678 251850351 251850284 1.170000e-13 87.9
31 TraesCS7D01G387700 chr1D 92.857 42 2 1 1997 2037 168483917 168483958 2.540000e-05 60.2
32 TraesCS7D01G387700 chr1D 96.875 32 1 0 2062 2093 318374905 318374936 1.000000e-03 54.7
33 TraesCS7D01G387700 chr6D 91.051 514 33 6 1 503 86380648 86381159 0.000000e+00 682.0
34 TraesCS7D01G387700 chr6D 90.716 517 36 5 1 507 34400756 34400242 0.000000e+00 678.0
35 TraesCS7D01G387700 chr6D 90.661 514 31 8 1 504 77830422 77829916 0.000000e+00 667.0
36 TraesCS7D01G387700 chr6D 91.176 68 6 0 611 678 34400628 34400561 2.510000e-15 93.5
37 TraesCS7D01G387700 chr6D 89.394 66 7 0 611 676 73795638 73795573 1.510000e-12 84.2
38 TraesCS7D01G387700 chr6D 88.235 68 8 0 611 678 464683266 464683199 5.430000e-12 82.4
39 TraesCS7D01G387700 chr5D 90.716 517 37 4 1 507 349877325 349877840 0.000000e+00 678.0
40 TraesCS7D01G387700 chr5D 90.076 524 29 9 1 503 256270493 256271014 0.000000e+00 658.0
41 TraesCS7D01G387700 chr5D 91.176 68 6 0 611 678 349877453 349877520 2.510000e-15 93.5
42 TraesCS7D01G387700 chr2D 90.787 521 25 9 1 500 318417330 318417848 0.000000e+00 675.0
43 TraesCS7D01G387700 chr2D 91.176 68 6 0 611 678 136524660 136524727 2.510000e-15 93.5
44 TraesCS7D01G387700 chr1A 89.962 528 31 7 1 507 585985914 585985388 0.000000e+00 662.0
45 TraesCS7D01G387700 chr1A 78.182 110 14 8 1934 2037 217608348 217608453 7.070000e-06 62.1
46 TraesCS7D01G387700 chr4D 89.583 528 32 5 1 507 446118124 446118649 0.000000e+00 649.0
47 TraesCS7D01G387700 chr4D 91.176 68 6 0 611 678 121480620 121480553 2.510000e-15 93.5
48 TraesCS7D01G387700 chr4D 91.176 68 6 0 611 678 310477419 310477352 2.510000e-15 93.5
49 TraesCS7D01G387700 chr4A 88.330 497 42 11 1 486 72304734 72304243 1.220000e-162 582.0
50 TraesCS7D01G387700 chr4A 83.902 528 35 26 1 507 3336777 3337275 2.150000e-125 459.0
51 TraesCS7D01G387700 chr4A 89.362 47 4 1 2053 2098 136431412 136431366 9.150000e-05 58.4
52 TraesCS7D01G387700 chr2A 86.832 524 50 10 1 507 103814275 103814796 3.420000e-158 568.0
53 TraesCS7D01G387700 chr2A 90.909 66 6 0 613 678 767148911 767148976 3.240000e-14 89.8
54 TraesCS7D01G387700 chr3B 94.444 36 1 1 2063 2098 425168878 425168912 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G387700 chr7D 501598949 501601317 2368 False 2237.000 4375 96.323500 1 2369 2 chr7D.!!$F1 2368
1 TraesCS7D01G387700 chr7D 501609681 501610358 677 True 798.000 798 88.584000 690 1349 1 chr7D.!!$R2 659
2 TraesCS7D01G387700 chr7D 146982597 146983113 516 True 667.000 667 90.211000 2 512 1 chr7D.!!$R1 510
3 TraesCS7D01G387700 chr7D 501776166 501778203 2037 True 396.525 950 88.291000 685 2217 4 chr7D.!!$R3 1532
4 TraesCS7D01G387700 chr7A 569111674 569112860 1186 True 1347.000 1347 87.592000 694 1876 1 chr7A.!!$R3 1182
5 TraesCS7D01G387700 chr7A 568695355 568696026 671 True 741.000 741 87.157000 694 1357 1 chr7A.!!$R2 663
6 TraesCS7D01G387700 chr7A 568129597 568130861 1264 False 476.000 1011 89.223333 789 2218 3 chr7A.!!$F1 1429
7 TraesCS7D01G387700 chr7A 568579313 568580835 1522 False 386.750 774 90.511000 758 2218 4 chr7A.!!$F2 1460
8 TraesCS7D01G387700 chr7B 531179848 531180774 926 False 1160.000 1160 89.375000 711 1652 1 chr7B.!!$F2 941
9 TraesCS7D01G387700 chr7B 531221939 531222695 756 True 725.000 725 84.845000 690 1419 1 chr7B.!!$R1 729
10 TraesCS7D01G387700 chr7B 530869581 530870335 754 False 586.000 586 81.771000 701 1419 1 chr7B.!!$F1 718
11 TraesCS7D01G387700 chr6A 516163175 516163679 504 False 741.000 741 93.110000 1 507 1 chr6A.!!$F1 506
12 TraesCS7D01G387700 chr3D 335200194 335200719 525 False 688.000 688 90.892000 1 507 1 chr3D.!!$F1 506
13 TraesCS7D01G387700 chr3D 47338873 47339399 526 True 410.750 728 91.705500 1 678 2 chr3D.!!$R3 677
14 TraesCS7D01G387700 chrUn 96337089 96337606 517 False 706.000 706 91.555000 1 510 1 chrUn.!!$F1 509
15 TraesCS7D01G387700 chr1D 251849966 251850479 513 True 390.450 693 90.509500 1 678 2 chr1D.!!$R1 677
16 TraesCS7D01G387700 chr6D 86380648 86381159 511 False 682.000 682 91.051000 1 503 1 chr6D.!!$F1 502
17 TraesCS7D01G387700 chr6D 77829916 77830422 506 True 667.000 667 90.661000 1 504 1 chr6D.!!$R2 503
18 TraesCS7D01G387700 chr6D 34400242 34400756 514 True 385.750 678 90.946000 1 678 2 chr6D.!!$R4 677
19 TraesCS7D01G387700 chr5D 256270493 256271014 521 False 658.000 658 90.076000 1 503 1 chr5D.!!$F1 502
20 TraesCS7D01G387700 chr5D 349877325 349877840 515 False 385.750 678 90.946000 1 678 2 chr5D.!!$F2 677
21 TraesCS7D01G387700 chr2D 318417330 318417848 518 False 675.000 675 90.787000 1 500 1 chr2D.!!$F2 499
22 TraesCS7D01G387700 chr1A 585985388 585985914 526 True 662.000 662 89.962000 1 507 1 chr1A.!!$R1 506
23 TraesCS7D01G387700 chr4D 446118124 446118649 525 False 649.000 649 89.583000 1 507 1 chr4D.!!$F1 506
24 TraesCS7D01G387700 chr2A 103814275 103814796 521 False 568.000 568 86.832000 1 507 1 chr2A.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 641 0.031616 TCCAAGGGCAAAAACCAGGT 60.032 50.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 3347 0.038343 GTGTTCATGCCAATTGCGGT 60.038 50.0 0.0 0.0 45.6 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 206 9.274206 ACTAGTGGTCTTTTTCTTTTATCTGTC 57.726 33.333 0.00 0.00 0.00 3.51
284 328 0.537143 GTGAATCCACTGTGCCACCA 60.537 55.000 1.29 0.00 40.10 4.17
508 560 4.384940 GCCCCATTGAAGTTGCTTTTAAA 58.615 39.130 0.00 0.00 0.00 1.52
509 561 5.003160 GCCCCATTGAAGTTGCTTTTAAAT 58.997 37.500 0.00 0.00 0.00 1.40
511 563 6.652900 GCCCCATTGAAGTTGCTTTTAAATAA 59.347 34.615 0.00 0.00 0.00 1.40
512 564 7.148423 GCCCCATTGAAGTTGCTTTTAAATAAG 60.148 37.037 0.00 0.00 0.00 1.73
513 565 7.877612 CCCCATTGAAGTTGCTTTTAAATAAGT 59.122 33.333 0.00 0.00 0.00 2.24
514 566 8.925700 CCCATTGAAGTTGCTTTTAAATAAGTC 58.074 33.333 0.00 0.00 0.00 3.01
515 567 9.474920 CCATTGAAGTTGCTTTTAAATAAGTCA 57.525 29.630 0.00 0.00 0.00 3.41
518 570 9.515020 TTGAAGTTGCTTTTAAATAAGTCACAG 57.485 29.630 0.00 0.00 0.00 3.66
519 571 8.898761 TGAAGTTGCTTTTAAATAAGTCACAGA 58.101 29.630 0.00 0.00 0.00 3.41
520 572 9.730420 GAAGTTGCTTTTAAATAAGTCACAGAA 57.270 29.630 0.00 0.00 0.00 3.02
535 587 8.836268 AAGTCACAGAAATTAATTACGGTACA 57.164 30.769 0.01 0.00 0.00 2.90
536 588 8.248117 AGTCACAGAAATTAATTACGGTACAC 57.752 34.615 0.01 1.58 0.00 2.90
537 589 8.092687 AGTCACAGAAATTAATTACGGTACACT 58.907 33.333 0.01 3.50 0.00 3.55
538 590 8.166706 GTCACAGAAATTAATTACGGTACACTG 58.833 37.037 0.01 0.00 0.00 3.66
539 591 8.089597 TCACAGAAATTAATTACGGTACACTGA 58.910 33.333 0.01 0.00 0.00 3.41
540 592 8.714179 CACAGAAATTAATTACGGTACACTGAA 58.286 33.333 0.01 0.00 0.00 3.02
541 593 9.444600 ACAGAAATTAATTACGGTACACTGAAT 57.555 29.630 0.01 0.00 0.00 2.57
552 604 7.373778 ACGGTACACTGAATTCTTTTTATCC 57.626 36.000 7.05 1.31 0.00 2.59
553 605 6.938030 ACGGTACACTGAATTCTTTTTATCCA 59.062 34.615 7.05 0.00 0.00 3.41
554 606 7.446013 ACGGTACACTGAATTCTTTTTATCCAA 59.554 33.333 7.05 0.00 0.00 3.53
555 607 8.293867 CGGTACACTGAATTCTTTTTATCCAAA 58.706 33.333 7.05 0.00 0.00 3.28
556 608 9.626045 GGTACACTGAATTCTTTTTATCCAAAG 57.374 33.333 7.05 0.00 35.39 2.77
557 609 9.626045 GTACACTGAATTCTTTTTATCCAAAGG 57.374 33.333 7.05 0.00 34.90 3.11
558 610 8.477419 ACACTGAATTCTTTTTATCCAAAGGA 57.523 30.769 7.05 0.00 34.90 3.36
559 611 9.093458 ACACTGAATTCTTTTTATCCAAAGGAT 57.907 29.630 7.05 3.74 45.40 3.24
560 612 9.933723 CACTGAATTCTTTTTATCCAAAGGATT 57.066 29.630 7.05 0.00 42.45 3.01
563 615 8.634475 GAATTCTTTTTATCCAAAGGATTCGG 57.366 34.615 10.16 0.00 43.85 4.30
564 616 6.524101 TTCTTTTTATCCAAAGGATTCGGG 57.476 37.500 3.55 0.00 39.79 5.14
565 617 5.576128 TCTTTTTATCCAAAGGATTCGGGT 58.424 37.500 3.55 0.00 39.79 5.28
566 618 6.014012 TCTTTTTATCCAAAGGATTCGGGTT 58.986 36.000 3.55 0.00 39.79 4.11
567 619 6.495526 TCTTTTTATCCAAAGGATTCGGGTTT 59.504 34.615 3.55 0.00 39.79 3.27
568 620 6.673839 TTTTATCCAAAGGATTCGGGTTTT 57.326 33.333 3.55 0.00 39.79 2.43
569 621 7.778185 TTTTATCCAAAGGATTCGGGTTTTA 57.222 32.000 3.55 0.00 39.79 1.52
570 622 7.964666 TTTATCCAAAGGATTCGGGTTTTAT 57.035 32.000 3.55 0.00 39.79 1.40
571 623 7.576861 TTATCCAAAGGATTCGGGTTTTATC 57.423 36.000 3.55 0.00 39.79 1.75
572 624 4.274978 TCCAAAGGATTCGGGTTTTATCC 58.725 43.478 0.00 0.00 38.48 2.59
573 625 4.020543 CCAAAGGATTCGGGTTTTATCCA 58.979 43.478 0.00 0.00 40.25 3.41
574 626 4.464597 CCAAAGGATTCGGGTTTTATCCAA 59.535 41.667 0.00 0.00 40.25 3.53
575 627 5.394115 CCAAAGGATTCGGGTTTTATCCAAG 60.394 44.000 0.00 0.00 40.25 3.61
576 628 3.898482 AGGATTCGGGTTTTATCCAAGG 58.102 45.455 0.00 0.00 40.25 3.61
577 629 2.956333 GGATTCGGGTTTTATCCAAGGG 59.044 50.000 0.00 0.00 38.16 3.95
578 630 1.842052 TTCGGGTTTTATCCAAGGGC 58.158 50.000 0.00 0.00 0.00 5.19
579 631 0.699399 TCGGGTTTTATCCAAGGGCA 59.301 50.000 0.00 0.00 0.00 5.36
580 632 1.075698 TCGGGTTTTATCCAAGGGCAA 59.924 47.619 0.00 0.00 0.00 4.52
581 633 1.896465 CGGGTTTTATCCAAGGGCAAA 59.104 47.619 0.00 0.00 0.00 3.68
582 634 2.300437 CGGGTTTTATCCAAGGGCAAAA 59.700 45.455 0.00 0.00 0.00 2.44
583 635 3.244249 CGGGTTTTATCCAAGGGCAAAAA 60.244 43.478 0.00 0.00 0.00 1.94
584 636 4.069304 GGGTTTTATCCAAGGGCAAAAAC 58.931 43.478 12.64 12.64 36.85 2.43
585 637 4.069304 GGTTTTATCCAAGGGCAAAAACC 58.931 43.478 19.24 19.24 43.14 3.27
586 638 4.445019 GGTTTTATCCAAGGGCAAAAACCA 60.445 41.667 24.14 0.00 45.58 3.67
587 639 4.615588 TTTATCCAAGGGCAAAAACCAG 57.384 40.909 0.00 0.00 0.00 4.00
588 640 1.351076 ATCCAAGGGCAAAAACCAGG 58.649 50.000 0.00 0.00 0.00 4.45
589 641 0.031616 TCCAAGGGCAAAAACCAGGT 60.032 50.000 0.00 0.00 0.00 4.00
590 642 0.836606 CCAAGGGCAAAAACCAGGTT 59.163 50.000 0.00 0.00 0.00 3.50
591 643 1.202639 CCAAGGGCAAAAACCAGGTTC 60.203 52.381 4.93 0.00 0.00 3.62
592 644 1.128200 AAGGGCAAAAACCAGGTTCC 58.872 50.000 4.93 1.94 0.00 3.62
593 645 0.264657 AGGGCAAAAACCAGGTTCCT 59.735 50.000 4.93 4.38 0.00 3.36
594 646 0.679505 GGGCAAAAACCAGGTTCCTC 59.320 55.000 4.93 0.00 0.00 3.71
595 647 0.679505 GGCAAAAACCAGGTTCCTCC 59.320 55.000 4.93 1.33 0.00 4.30
596 648 1.408969 GCAAAAACCAGGTTCCTCCA 58.591 50.000 4.93 0.00 39.02 3.86
597 649 1.970640 GCAAAAACCAGGTTCCTCCAT 59.029 47.619 4.93 0.00 39.02 3.41
598 650 2.029020 GCAAAAACCAGGTTCCTCCATC 60.029 50.000 4.93 0.00 39.02 3.51
599 651 2.562738 CAAAAACCAGGTTCCTCCATCC 59.437 50.000 4.93 0.00 39.02 3.51
600 652 1.455822 AAACCAGGTTCCTCCATCCA 58.544 50.000 4.93 0.00 39.02 3.41
601 653 1.455822 AACCAGGTTCCTCCATCCAA 58.544 50.000 0.00 0.00 39.02 3.53
602 654 0.995024 ACCAGGTTCCTCCATCCAAG 59.005 55.000 0.00 0.00 39.02 3.61
603 655 0.394899 CCAGGTTCCTCCATCCAAGC 60.395 60.000 0.00 0.00 39.02 4.01
604 656 0.745845 CAGGTTCCTCCATCCAAGCG 60.746 60.000 0.00 0.00 39.02 4.68
605 657 1.452108 GGTTCCTCCATCCAAGCGG 60.452 63.158 0.00 0.00 35.97 5.52
606 658 2.115291 GTTCCTCCATCCAAGCGGC 61.115 63.158 0.00 0.00 0.00 6.53
607 659 3.344137 TTCCTCCATCCAAGCGGCC 62.344 63.158 0.00 0.00 0.00 6.13
608 660 4.113815 CCTCCATCCAAGCGGCCA 62.114 66.667 2.24 0.00 0.00 5.36
609 661 2.045045 CTCCATCCAAGCGGCCAA 60.045 61.111 2.24 0.00 0.00 4.52
610 662 1.678635 CTCCATCCAAGCGGCCAAA 60.679 57.895 2.24 0.00 0.00 3.28
611 663 1.937546 CTCCATCCAAGCGGCCAAAC 61.938 60.000 2.24 0.00 0.00 2.93
612 664 2.573340 CATCCAAGCGGCCAAACC 59.427 61.111 2.24 0.00 0.00 3.27
613 665 1.978617 CATCCAAGCGGCCAAACCT 60.979 57.895 2.24 0.00 35.61 3.50
614 666 1.228862 ATCCAAGCGGCCAAACCTT 60.229 52.632 2.24 0.00 35.61 3.50
615 667 1.250840 ATCCAAGCGGCCAAACCTTC 61.251 55.000 2.24 0.00 35.61 3.46
616 668 2.199652 CCAAGCGGCCAAACCTTCA 61.200 57.895 2.24 0.00 35.61 3.02
617 669 1.286880 CAAGCGGCCAAACCTTCAG 59.713 57.895 2.24 0.00 35.61 3.02
618 670 1.150536 AAGCGGCCAAACCTTCAGA 59.849 52.632 2.24 0.00 35.61 3.27
619 671 1.172812 AAGCGGCCAAACCTTCAGAC 61.173 55.000 2.24 0.00 35.61 3.51
620 672 1.896660 GCGGCCAAACCTTCAGACA 60.897 57.895 2.24 0.00 35.61 3.41
621 673 1.244019 GCGGCCAAACCTTCAGACAT 61.244 55.000 2.24 0.00 35.61 3.06
622 674 0.804989 CGGCCAAACCTTCAGACATC 59.195 55.000 2.24 0.00 35.61 3.06
623 675 0.804989 GGCCAAACCTTCAGACATCG 59.195 55.000 0.00 0.00 34.51 3.84
624 676 1.610624 GGCCAAACCTTCAGACATCGA 60.611 52.381 0.00 0.00 34.51 3.59
625 677 2.151202 GCCAAACCTTCAGACATCGAA 58.849 47.619 0.00 0.00 0.00 3.71
626 678 2.160417 GCCAAACCTTCAGACATCGAAG 59.840 50.000 0.00 0.00 39.69 3.79
627 679 3.664107 CCAAACCTTCAGACATCGAAGA 58.336 45.455 12.19 0.00 42.05 2.87
628 680 4.065088 CCAAACCTTCAGACATCGAAGAA 58.935 43.478 12.19 0.00 43.58 2.52
629 681 4.515191 CCAAACCTTCAGACATCGAAGAAA 59.485 41.667 12.19 0.00 43.58 2.52
630 682 5.334414 CCAAACCTTCAGACATCGAAGAAAG 60.334 44.000 12.19 0.00 43.58 2.62
631 683 4.873746 ACCTTCAGACATCGAAGAAAGA 57.126 40.909 12.19 0.00 43.58 2.52
632 684 4.561105 ACCTTCAGACATCGAAGAAAGAC 58.439 43.478 12.19 0.00 43.58 3.01
633 685 4.039245 ACCTTCAGACATCGAAGAAAGACA 59.961 41.667 12.19 0.00 43.58 3.41
634 686 5.174395 CCTTCAGACATCGAAGAAAGACAT 58.826 41.667 12.19 0.00 43.58 3.06
635 687 5.641209 CCTTCAGACATCGAAGAAAGACATT 59.359 40.000 12.19 0.00 43.58 2.71
636 688 6.813649 CCTTCAGACATCGAAGAAAGACATTA 59.186 38.462 12.19 0.00 43.58 1.90
637 689 7.493971 CCTTCAGACATCGAAGAAAGACATTAT 59.506 37.037 12.19 0.00 43.58 1.28
638 690 7.993821 TCAGACATCGAAGAAAGACATTATC 57.006 36.000 0.00 0.00 43.58 1.75
639 691 7.547227 TCAGACATCGAAGAAAGACATTATCA 58.453 34.615 0.00 0.00 43.58 2.15
640 692 8.034804 TCAGACATCGAAGAAAGACATTATCAA 58.965 33.333 0.00 0.00 43.58 2.57
641 693 8.326713 CAGACATCGAAGAAAGACATTATCAAG 58.673 37.037 0.00 0.00 43.58 3.02
642 694 8.037758 AGACATCGAAGAAAGACATTATCAAGT 58.962 33.333 0.00 0.00 43.58 3.16
643 695 8.190888 ACATCGAAGAAAGACATTATCAAGTC 57.809 34.615 0.00 0.00 43.58 3.01
644 696 6.871044 TCGAAGAAAGACATTATCAAGTCG 57.129 37.500 0.00 0.00 39.67 4.18
645 697 5.805486 TCGAAGAAAGACATTATCAAGTCGG 59.195 40.000 0.00 0.00 39.67 4.79
646 698 5.805486 CGAAGAAAGACATTATCAAGTCGGA 59.195 40.000 0.00 0.00 39.67 4.55
647 699 6.020281 CGAAGAAAGACATTATCAAGTCGGAG 60.020 42.308 0.00 0.00 39.67 4.63
648 700 6.287589 AGAAAGACATTATCAAGTCGGAGT 57.712 37.500 0.00 0.00 39.67 3.85
649 701 6.334202 AGAAAGACATTATCAAGTCGGAGTC 58.666 40.000 0.00 0.00 39.67 3.36
650 702 5.661056 AAGACATTATCAAGTCGGAGTCA 57.339 39.130 0.00 0.00 39.67 3.41
651 703 5.255710 AGACATTATCAAGTCGGAGTCAG 57.744 43.478 0.00 0.00 39.67 3.51
652 704 4.950475 AGACATTATCAAGTCGGAGTCAGA 59.050 41.667 0.00 0.00 39.67 3.27
653 705 5.419155 AGACATTATCAAGTCGGAGTCAGAA 59.581 40.000 0.00 0.00 39.67 3.02
654 706 6.037786 ACATTATCAAGTCGGAGTCAGAAA 57.962 37.500 0.00 0.00 0.00 2.52
655 707 6.102663 ACATTATCAAGTCGGAGTCAGAAAG 58.897 40.000 0.00 0.00 0.00 2.62
656 708 2.440539 TCAAGTCGGAGTCAGAAAGC 57.559 50.000 0.00 0.00 0.00 3.51
657 709 1.063806 CAAGTCGGAGTCAGAAAGCG 58.936 55.000 0.00 0.00 0.00 4.68
658 710 0.959553 AAGTCGGAGTCAGAAAGCGA 59.040 50.000 0.00 0.00 0.00 4.93
659 711 0.241481 AGTCGGAGTCAGAAAGCGAC 59.759 55.000 8.70 8.70 31.75 5.19
660 712 1.066114 GTCGGAGTCAGAAAGCGACG 61.066 60.000 0.00 0.00 38.46 5.12
661 713 1.209383 CGGAGTCAGAAAGCGACGA 59.791 57.895 0.00 0.00 38.46 4.20
662 714 1.066114 CGGAGTCAGAAAGCGACGAC 61.066 60.000 0.00 0.00 38.46 4.34
663 715 0.241481 GGAGTCAGAAAGCGACGACT 59.759 55.000 0.00 0.00 41.32 4.18
664 716 1.467734 GGAGTCAGAAAGCGACGACTA 59.532 52.381 0.00 0.00 38.80 2.59
665 717 2.476519 GGAGTCAGAAAGCGACGACTAG 60.477 54.545 0.00 0.00 38.80 2.57
666 718 2.152830 AGTCAGAAAGCGACGACTAGT 58.847 47.619 0.00 0.00 36.97 2.57
667 719 2.095668 AGTCAGAAAGCGACGACTAGTG 60.096 50.000 0.00 0.00 36.97 2.74
668 720 1.199327 TCAGAAAGCGACGACTAGTGG 59.801 52.381 0.00 0.25 0.00 4.00
669 721 1.068472 CAGAAAGCGACGACTAGTGGT 60.068 52.381 10.62 10.62 0.00 4.16
670 722 1.199558 AGAAAGCGACGACTAGTGGTC 59.800 52.381 23.77 23.77 41.28 4.02
671 723 1.199558 GAAAGCGACGACTAGTGGTCT 59.800 52.381 28.38 14.78 42.44 3.85
672 724 1.245732 AAGCGACGACTAGTGGTCTT 58.754 50.000 28.38 17.80 42.44 3.01
673 725 1.245732 AGCGACGACTAGTGGTCTTT 58.754 50.000 28.38 17.10 42.44 2.52
674 726 1.612463 AGCGACGACTAGTGGTCTTTT 59.388 47.619 28.38 15.07 42.44 2.27
675 727 2.035576 AGCGACGACTAGTGGTCTTTTT 59.964 45.455 28.38 13.08 42.44 1.94
676 728 2.407696 GCGACGACTAGTGGTCTTTTTC 59.592 50.000 28.38 13.07 42.44 2.29
677 729 3.856267 GCGACGACTAGTGGTCTTTTTCT 60.856 47.826 28.38 0.00 42.44 2.52
678 730 4.614535 GCGACGACTAGTGGTCTTTTTCTA 60.615 45.833 28.38 0.00 42.44 2.10
679 731 4.850470 CGACGACTAGTGGTCTTTTTCTAC 59.150 45.833 28.38 6.91 42.44 2.59
680 732 5.561532 CGACGACTAGTGGTCTTTTTCTACA 60.562 44.000 28.38 0.00 42.44 2.74
681 733 6.342338 ACGACTAGTGGTCTTTTTCTACAT 57.658 37.500 4.48 0.00 42.44 2.29
682 734 6.388278 ACGACTAGTGGTCTTTTTCTACATC 58.612 40.000 4.48 0.00 42.44 3.06
683 735 5.805994 CGACTAGTGGTCTTTTTCTACATCC 59.194 44.000 0.00 0.00 42.44 3.51
822 910 2.043450 CCCCGCTCTCTCTCACCT 60.043 66.667 0.00 0.00 0.00 4.00
1481 2014 9.672673 TTTTGTCGGTAGTAGTAGTATCTAGTT 57.327 33.333 0.00 0.00 0.00 2.24
1482 2015 8.879342 TTGTCGGTAGTAGTAGTATCTAGTTC 57.121 38.462 0.00 0.00 0.00 3.01
1483 2016 7.142021 TGTCGGTAGTAGTAGTATCTAGTTCG 58.858 42.308 0.00 0.00 0.00 3.95
1484 2017 7.013369 TGTCGGTAGTAGTAGTATCTAGTTCGA 59.987 40.741 0.00 0.00 31.99 3.71
1485 2018 8.026607 GTCGGTAGTAGTAGTATCTAGTTCGAT 58.973 40.741 0.00 0.00 34.28 3.59
1486 2019 8.026026 TCGGTAGTAGTAGTATCTAGTTCGATG 58.974 40.741 0.00 0.00 30.85 3.84
1487 2020 8.026026 CGGTAGTAGTAGTATCTAGTTCGATGA 58.974 40.741 0.00 0.00 0.00 2.92
1488 2021 9.357652 GGTAGTAGTAGTATCTAGTTCGATGAG 57.642 40.741 0.00 0.00 0.00 2.90
1494 2027 9.439500 AGTAGTATCTAGTTCGATGAGATAACC 57.561 37.037 11.10 3.61 34.73 2.85
1495 2028 7.367159 AGTATCTAGTTCGATGAGATAACCG 57.633 40.000 11.10 0.00 34.73 4.44
1496 2029 5.630661 ATCTAGTTCGATGAGATAACCGG 57.369 43.478 0.00 0.00 0.00 5.28
1497 2030 2.510768 AGTTCGATGAGATAACCGGC 57.489 50.000 0.00 0.00 0.00 6.13
1498 2031 1.129326 GTTCGATGAGATAACCGGCG 58.871 55.000 0.00 0.00 0.00 6.46
1499 2032 0.596600 TTCGATGAGATAACCGGCGC 60.597 55.000 0.00 0.00 0.00 6.53
1500 2033 2.365068 CGATGAGATAACCGGCGCG 61.365 63.158 0.00 0.00 0.00 6.86
1501 2034 2.658707 GATGAGATAACCGGCGCGC 61.659 63.158 25.94 25.94 0.00 6.86
1502 2035 3.439513 ATGAGATAACCGGCGCGCA 62.440 57.895 34.42 12.78 0.00 6.09
1503 2036 3.627218 GAGATAACCGGCGCGCAC 61.627 66.667 34.42 20.89 0.00 5.34
1587 2120 1.612463 CTTGCTTTTTGCCTGCTCTCT 59.388 47.619 0.00 0.00 42.00 3.10
1595 2128 3.827008 TTGCCTGCTCTCTAATTCGAT 57.173 42.857 0.00 0.00 0.00 3.59
1636 2169 2.626780 GCTTCTCGTTTGGGTGGGC 61.627 63.158 0.00 0.00 0.00 5.36
1739 2803 3.368323 GCATTAACCACCCCTCAACAATG 60.368 47.826 0.00 0.00 0.00 2.82
1799 2868 2.670229 GCAGGCATGACACAAAGTGATG 60.670 50.000 0.62 0.00 43.67 3.07
1825 2900 0.591170 AGTTTGTGCGAAATGACGGG 59.409 50.000 0.00 0.00 0.00 5.28
1848 2923 4.319911 GGCTTTACACGATTGCTGTAAACA 60.320 41.667 12.84 0.00 38.56 2.83
1890 2965 2.726373 CGTTGAAACGTGCACAGTGAAA 60.726 45.455 18.64 8.39 46.63 2.69
1898 2973 2.650608 GTGCACAGTGAAATTTCGGTC 58.349 47.619 13.17 6.70 0.00 4.79
1901 2976 2.808543 GCACAGTGAAATTTCGGTCTCT 59.191 45.455 13.34 4.28 0.00 3.10
1905 2988 4.273480 ACAGTGAAATTTCGGTCTCTGTTG 59.727 41.667 13.34 4.13 42.81 3.33
1907 2990 5.007626 CAGTGAAATTTCGGTCTCTGTTGAA 59.992 40.000 13.34 0.00 33.00 2.69
1908 2991 5.588648 AGTGAAATTTCGGTCTCTGTTGAAA 59.411 36.000 13.34 0.00 35.09 2.69
1948 3061 8.798975 ATTATAGAACATACTCCCTTCCTTCA 57.201 34.615 0.00 0.00 0.00 3.02
1949 3062 8.798975 TTATAGAACATACTCCCTTCCTTCAT 57.201 34.615 0.00 0.00 0.00 2.57
1954 3067 9.225682 AGAACATACTCCCTTCCTTCATAAATA 57.774 33.333 0.00 0.00 0.00 1.40
1955 3068 9.274206 GAACATACTCCCTTCCTTCATAAATAC 57.726 37.037 0.00 0.00 0.00 1.89
1956 3069 8.568617 ACATACTCCCTTCCTTCATAAATACT 57.431 34.615 0.00 0.00 0.00 2.12
1960 3073 8.625467 ACTCCCTTCCTTCATAAATACTAGTT 57.375 34.615 0.00 0.00 0.00 2.24
1961 3074 8.487028 ACTCCCTTCCTTCATAAATACTAGTTG 58.513 37.037 0.00 0.00 0.00 3.16
1962 3075 7.802117 TCCCTTCCTTCATAAATACTAGTTGG 58.198 38.462 0.00 0.00 0.00 3.77
1963 3076 7.626084 TCCCTTCCTTCATAAATACTAGTTGGA 59.374 37.037 0.00 0.00 0.00 3.53
1964 3077 8.440771 CCCTTCCTTCATAAATACTAGTTGGAT 58.559 37.037 0.00 0.00 0.00 3.41
2007 3122 9.365311 CGTACATACGGATGAAAATAAATGAAC 57.635 33.333 16.36 0.00 45.30 3.18
2010 3125 9.787532 ACATACGGATGAAAATAAATGAACAAG 57.212 29.630 16.36 0.00 36.48 3.16
2014 3129 6.585702 CGGATGAAAATAAATGAACAAGCACA 59.414 34.615 0.00 0.00 0.00 4.57
2015 3130 7.410728 CGGATGAAAATAAATGAACAAGCACAC 60.411 37.037 0.00 0.00 0.00 3.82
2029 3144 7.228507 TGAACAAGCACACTAAAACATGTCTAT 59.771 33.333 0.00 0.00 0.00 1.98
2091 3212 9.042450 TCTTATATTTGTGAACAGAGGGAGTAA 57.958 33.333 0.00 0.00 0.00 2.24
2092 3213 9.667107 CTTATATTTGTGAACAGAGGGAGTAAA 57.333 33.333 0.00 0.00 0.00 2.01
2094 3215 8.738645 ATATTTGTGAACAGAGGGAGTAAATC 57.261 34.615 0.00 0.00 0.00 2.17
2095 3216 5.560722 TTGTGAACAGAGGGAGTAAATCA 57.439 39.130 0.00 0.00 0.00 2.57
2096 3217 5.762179 TGTGAACAGAGGGAGTAAATCAT 57.238 39.130 0.00 0.00 0.00 2.45
2097 3218 6.867519 TGTGAACAGAGGGAGTAAATCATA 57.132 37.500 0.00 0.00 0.00 2.15
2098 3219 7.252612 TGTGAACAGAGGGAGTAAATCATAA 57.747 36.000 0.00 0.00 0.00 1.90
2099 3220 7.861629 TGTGAACAGAGGGAGTAAATCATAAT 58.138 34.615 0.00 0.00 0.00 1.28
2100 3221 8.328758 TGTGAACAGAGGGAGTAAATCATAATT 58.671 33.333 0.00 0.00 0.00 1.40
2101 3222 9.832445 GTGAACAGAGGGAGTAAATCATAATTA 57.168 33.333 0.00 0.00 0.00 1.40
2125 3246 9.982651 TTATAGCAACTAGTAGGTGAATTGATC 57.017 33.333 19.68 0.00 33.95 2.92
2126 3247 6.299805 AGCAACTAGTAGGTGAATTGATCA 57.700 37.500 19.68 0.00 33.95 2.92
2131 3252 9.987272 CAACTAGTAGGTGAATTGATCATCATA 57.013 33.333 9.81 0.00 41.98 2.15
2172 3296 5.183140 ACACAACAACCAATACTTCCATAGC 59.817 40.000 0.00 0.00 0.00 2.97
2176 3300 5.580022 ACAACCAATACTTCCATAGCCTTT 58.420 37.500 0.00 0.00 0.00 3.11
2182 3306 6.211515 CAATACTTCCATAGCCTTTTGATGC 58.788 40.000 0.00 0.00 0.00 3.91
2186 3310 3.820557 TCCATAGCCTTTTGATGCTACC 58.179 45.455 0.00 0.00 42.43 3.18
2192 3316 1.670811 CCTTTTGATGCTACCGCGAAT 59.329 47.619 8.23 0.00 39.65 3.34
2198 3322 6.880822 TTTGATGCTACCGCGAATATATAC 57.119 37.500 8.23 0.00 39.65 1.47
2201 3325 4.268767 TGCTACCGCGAATATATACTCG 57.731 45.455 8.23 9.16 39.65 4.18
2213 3337 1.466856 TATACTCGTCCACCGCACTT 58.533 50.000 0.00 0.00 36.19 3.16
2214 3338 1.466856 ATACTCGTCCACCGCACTTA 58.533 50.000 0.00 0.00 36.19 2.24
2215 3339 1.466856 TACTCGTCCACCGCACTTAT 58.533 50.000 0.00 0.00 36.19 1.73
2216 3340 1.466856 ACTCGTCCACCGCACTTATA 58.533 50.000 0.00 0.00 36.19 0.98
2217 3341 2.029623 ACTCGTCCACCGCACTTATAT 58.970 47.619 0.00 0.00 36.19 0.86
2218 3342 3.216800 ACTCGTCCACCGCACTTATATA 58.783 45.455 0.00 0.00 36.19 0.86
2219 3343 3.004106 ACTCGTCCACCGCACTTATATAC 59.996 47.826 0.00 0.00 36.19 1.47
2220 3344 3.216800 TCGTCCACCGCACTTATATACT 58.783 45.455 0.00 0.00 36.19 2.12
2221 3345 3.251729 TCGTCCACCGCACTTATATACTC 59.748 47.826 0.00 0.00 36.19 2.59
2222 3346 3.252701 CGTCCACCGCACTTATATACTCT 59.747 47.826 0.00 0.00 0.00 3.24
2223 3347 4.453478 CGTCCACCGCACTTATATACTCTA 59.547 45.833 0.00 0.00 0.00 2.43
2224 3348 5.616424 CGTCCACCGCACTTATATACTCTAC 60.616 48.000 0.00 0.00 0.00 2.59
2225 3349 4.763793 TCCACCGCACTTATATACTCTACC 59.236 45.833 0.00 0.00 0.00 3.18
2226 3350 4.379186 CCACCGCACTTATATACTCTACCG 60.379 50.000 0.00 0.00 0.00 4.02
2227 3351 3.190118 ACCGCACTTATATACTCTACCGC 59.810 47.826 0.00 0.00 0.00 5.68
2228 3352 3.189910 CCGCACTTATATACTCTACCGCA 59.810 47.826 0.00 0.00 0.00 5.69
2229 3353 4.320714 CCGCACTTATATACTCTACCGCAA 60.321 45.833 0.00 0.00 0.00 4.85
2230 3354 5.399858 CGCACTTATATACTCTACCGCAAT 58.600 41.667 0.00 0.00 0.00 3.56
2231 3355 5.862323 CGCACTTATATACTCTACCGCAATT 59.138 40.000 0.00 0.00 0.00 2.32
2232 3356 6.183359 CGCACTTATATACTCTACCGCAATTG 60.183 42.308 0.00 0.00 0.00 2.32
2233 3357 6.090898 GCACTTATATACTCTACCGCAATTGG 59.909 42.308 7.72 0.00 0.00 3.16
2234 3358 6.090898 CACTTATATACTCTACCGCAATTGGC 59.909 42.308 7.72 0.00 39.90 4.52
2235 3359 4.617253 ATATACTCTACCGCAATTGGCA 57.383 40.909 7.72 0.00 45.17 4.92
2236 3360 3.492102 ATACTCTACCGCAATTGGCAT 57.508 42.857 7.72 0.00 45.17 4.40
2237 3361 1.382522 ACTCTACCGCAATTGGCATG 58.617 50.000 7.72 0.00 45.17 4.06
2238 3362 1.065491 ACTCTACCGCAATTGGCATGA 60.065 47.619 7.72 0.00 45.17 3.07
2239 3363 2.016318 CTCTACCGCAATTGGCATGAA 58.984 47.619 7.72 0.00 45.17 2.57
2240 3364 1.742831 TCTACCGCAATTGGCATGAAC 59.257 47.619 7.72 0.00 45.17 3.18
2241 3365 1.472082 CTACCGCAATTGGCATGAACA 59.528 47.619 7.72 0.00 45.17 3.18
2242 3366 0.038343 ACCGCAATTGGCATGAACAC 60.038 50.000 7.72 0.00 45.17 3.32
2243 3367 1.072116 CCGCAATTGGCATGAACACG 61.072 55.000 7.72 0.00 45.17 4.49
2244 3368 1.676438 CGCAATTGGCATGAACACGC 61.676 55.000 7.72 0.00 45.17 5.34
2245 3369 0.388907 GCAATTGGCATGAACACGCT 60.389 50.000 7.72 0.00 43.97 5.07
2246 3370 1.621107 CAATTGGCATGAACACGCTC 58.379 50.000 0.00 0.00 0.00 5.03
2247 3371 1.200716 CAATTGGCATGAACACGCTCT 59.799 47.619 0.00 0.00 0.00 4.09
2248 3372 1.538047 ATTGGCATGAACACGCTCTT 58.462 45.000 0.00 0.00 0.00 2.85
2249 3373 1.317613 TTGGCATGAACACGCTCTTT 58.682 45.000 0.00 0.00 0.00 2.52
2250 3374 1.317613 TGGCATGAACACGCTCTTTT 58.682 45.000 0.00 0.00 0.00 2.27
2251 3375 1.680735 TGGCATGAACACGCTCTTTTT 59.319 42.857 0.00 0.00 0.00 1.94
2252 3376 2.881513 TGGCATGAACACGCTCTTTTTA 59.118 40.909 0.00 0.00 0.00 1.52
2253 3377 3.505680 TGGCATGAACACGCTCTTTTTAT 59.494 39.130 0.00 0.00 0.00 1.40
2254 3378 4.098416 GGCATGAACACGCTCTTTTTATC 58.902 43.478 0.00 0.00 0.00 1.75
2255 3379 4.142600 GGCATGAACACGCTCTTTTTATCT 60.143 41.667 0.00 0.00 0.00 1.98
2256 3380 5.393962 GCATGAACACGCTCTTTTTATCTT 58.606 37.500 0.00 0.00 0.00 2.40
2257 3381 6.403200 GGCATGAACACGCTCTTTTTATCTTA 60.403 38.462 0.00 0.00 0.00 2.10
2258 3382 6.466097 GCATGAACACGCTCTTTTTATCTTAC 59.534 38.462 0.00 0.00 0.00 2.34
2259 3383 7.518161 CATGAACACGCTCTTTTTATCTTACA 58.482 34.615 0.00 0.00 0.00 2.41
2260 3384 7.667043 TGAACACGCTCTTTTTATCTTACAT 57.333 32.000 0.00 0.00 0.00 2.29
2261 3385 8.766000 TGAACACGCTCTTTTTATCTTACATA 57.234 30.769 0.00 0.00 0.00 2.29
2262 3386 9.378551 TGAACACGCTCTTTTTATCTTACATAT 57.621 29.630 0.00 0.00 0.00 1.78
2263 3387 9.851043 GAACACGCTCTTTTTATCTTACATATC 57.149 33.333 0.00 0.00 0.00 1.63
2264 3388 8.942338 ACACGCTCTTTTTATCTTACATATCA 57.058 30.769 0.00 0.00 0.00 2.15
2265 3389 9.378551 ACACGCTCTTTTTATCTTACATATCAA 57.621 29.630 0.00 0.00 0.00 2.57
2283 3407 9.295825 ACATATCAAATCACTTGTTTAGGTTGA 57.704 29.630 0.00 0.00 36.34 3.18
2288 3412 9.349713 TCAAATCACTTGTTTAGGTTGATTAGT 57.650 29.630 0.00 0.00 36.34 2.24
2312 3436 9.823647 AGTATTTTACCTAGTGAGACAATCATG 57.176 33.333 0.00 0.00 40.92 3.07
2313 3437 9.601217 GTATTTTACCTAGTGAGACAATCATGT 57.399 33.333 0.00 0.00 44.25 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.997897 ATAGGCGGCTCGATCCCC 60.998 66.667 17.67 2.34 0.00 4.81
61 62 7.358931 CGTTTCTCGTAGCTTCAGTTTCAATTA 60.359 37.037 0.00 0.00 34.52 1.40
205 206 8.760103 TCAGTACATAGATAGTTCTAGCGTAG 57.240 38.462 0.00 0.00 37.86 3.51
263 306 1.317613 GTGGCACAGTGGATTCACAA 58.682 50.000 13.86 0.00 45.91 3.33
376 428 3.998672 GTCCGTCTGCCGACCCAA 61.999 66.667 2.40 0.00 39.56 4.12
509 561 9.926158 TGTACCGTAATTAATTTCTGTGACTTA 57.074 29.630 5.91 0.00 0.00 2.24
511 563 8.092687 AGTGTACCGTAATTAATTTCTGTGACT 58.907 33.333 5.91 7.70 0.00 3.41
512 564 8.166706 CAGTGTACCGTAATTAATTTCTGTGAC 58.833 37.037 5.91 5.85 0.00 3.67
513 565 8.089597 TCAGTGTACCGTAATTAATTTCTGTGA 58.910 33.333 5.91 0.00 0.00 3.58
514 566 8.246908 TCAGTGTACCGTAATTAATTTCTGTG 57.753 34.615 5.91 0.00 0.00 3.66
515 567 8.836268 TTCAGTGTACCGTAATTAATTTCTGT 57.164 30.769 5.91 6.57 0.00 3.41
526 578 8.938906 GGATAAAAAGAATTCAGTGTACCGTAA 58.061 33.333 8.44 0.00 0.00 3.18
527 579 8.095792 TGGATAAAAAGAATTCAGTGTACCGTA 58.904 33.333 8.44 0.00 0.00 4.02
528 580 6.938030 TGGATAAAAAGAATTCAGTGTACCGT 59.062 34.615 8.44 0.00 0.00 4.83
529 581 7.372451 TGGATAAAAAGAATTCAGTGTACCG 57.628 36.000 8.44 0.00 0.00 4.02
530 582 9.626045 CTTTGGATAAAAAGAATTCAGTGTACC 57.374 33.333 8.44 3.76 39.12 3.34
531 583 9.626045 CCTTTGGATAAAAAGAATTCAGTGTAC 57.374 33.333 8.44 0.00 39.12 2.90
532 584 9.581289 TCCTTTGGATAAAAAGAATTCAGTGTA 57.419 29.630 8.44 0.00 39.12 2.90
533 585 8.477419 TCCTTTGGATAAAAAGAATTCAGTGT 57.523 30.769 8.44 0.00 39.12 3.55
534 586 9.933723 AATCCTTTGGATAAAAAGAATTCAGTG 57.066 29.630 8.44 0.00 42.27 3.66
536 588 9.294030 CGAATCCTTTGGATAAAAAGAATTCAG 57.706 33.333 8.44 0.00 42.27 3.02
537 589 8.250332 CCGAATCCTTTGGATAAAAAGAATTCA 58.750 33.333 8.44 0.00 42.27 2.57
538 590 7.706607 CCCGAATCCTTTGGATAAAAAGAATTC 59.293 37.037 0.00 0.00 42.27 2.17
539 591 7.180229 ACCCGAATCCTTTGGATAAAAAGAATT 59.820 33.333 0.00 0.00 42.27 2.17
540 592 6.667848 ACCCGAATCCTTTGGATAAAAAGAAT 59.332 34.615 0.00 0.00 42.27 2.40
541 593 6.014012 ACCCGAATCCTTTGGATAAAAAGAA 58.986 36.000 0.00 0.00 42.27 2.52
542 594 5.576128 ACCCGAATCCTTTGGATAAAAAGA 58.424 37.500 0.00 0.00 42.27 2.52
543 595 5.914898 ACCCGAATCCTTTGGATAAAAAG 57.085 39.130 0.00 0.00 42.27 2.27
544 596 6.673839 AAACCCGAATCCTTTGGATAAAAA 57.326 33.333 0.00 0.00 42.27 1.94
545 597 6.673839 AAAACCCGAATCCTTTGGATAAAA 57.326 33.333 0.00 0.00 42.27 1.52
546 598 7.068962 GGATAAAACCCGAATCCTTTGGATAAA 59.931 37.037 0.00 0.00 42.27 1.40
547 599 6.548251 GGATAAAACCCGAATCCTTTGGATAA 59.452 38.462 0.00 0.00 42.27 1.75
548 600 6.066032 GGATAAAACCCGAATCCTTTGGATA 58.934 40.000 0.00 0.00 42.27 2.59
549 601 4.893524 GGATAAAACCCGAATCCTTTGGAT 59.106 41.667 0.00 0.00 45.46 3.41
550 602 4.263994 TGGATAAAACCCGAATCCTTTGGA 60.264 41.667 0.00 0.00 39.97 3.53
551 603 4.020543 TGGATAAAACCCGAATCCTTTGG 58.979 43.478 0.00 0.00 39.97 3.28
552 604 5.394115 CCTTGGATAAAACCCGAATCCTTTG 60.394 44.000 0.00 0.00 39.97 2.77
553 605 4.709886 CCTTGGATAAAACCCGAATCCTTT 59.290 41.667 0.00 0.00 39.97 3.11
554 606 4.278310 CCTTGGATAAAACCCGAATCCTT 58.722 43.478 0.00 0.00 39.97 3.36
555 607 3.372675 CCCTTGGATAAAACCCGAATCCT 60.373 47.826 0.00 0.00 39.97 3.24
556 608 2.956333 CCCTTGGATAAAACCCGAATCC 59.044 50.000 0.00 0.00 39.76 3.01
557 609 2.361119 GCCCTTGGATAAAACCCGAATC 59.639 50.000 0.00 0.00 0.00 2.52
558 610 2.291930 TGCCCTTGGATAAAACCCGAAT 60.292 45.455 0.00 0.00 0.00 3.34
559 611 1.075698 TGCCCTTGGATAAAACCCGAA 59.924 47.619 0.00 0.00 0.00 4.30
560 612 0.699399 TGCCCTTGGATAAAACCCGA 59.301 50.000 0.00 0.00 0.00 5.14
561 613 1.551452 TTGCCCTTGGATAAAACCCG 58.449 50.000 0.00 0.00 0.00 5.28
562 614 4.069304 GTTTTTGCCCTTGGATAAAACCC 58.931 43.478 0.00 0.00 34.50 4.11
563 615 4.069304 GGTTTTTGCCCTTGGATAAAACC 58.931 43.478 18.29 18.29 43.35 3.27
564 616 4.709250 TGGTTTTTGCCCTTGGATAAAAC 58.291 39.130 11.60 11.60 37.08 2.43
565 617 4.202409 CCTGGTTTTTGCCCTTGGATAAAA 60.202 41.667 0.00 0.00 0.00 1.52
566 618 3.326297 CCTGGTTTTTGCCCTTGGATAAA 59.674 43.478 0.00 0.00 0.00 1.40
567 619 2.903135 CCTGGTTTTTGCCCTTGGATAA 59.097 45.455 0.00 0.00 0.00 1.75
568 620 2.158234 ACCTGGTTTTTGCCCTTGGATA 60.158 45.455 0.00 0.00 0.00 2.59
569 621 1.351076 CCTGGTTTTTGCCCTTGGAT 58.649 50.000 0.00 0.00 0.00 3.41
570 622 0.031616 ACCTGGTTTTTGCCCTTGGA 60.032 50.000 0.00 0.00 0.00 3.53
571 623 0.836606 AACCTGGTTTTTGCCCTTGG 59.163 50.000 6.18 0.00 0.00 3.61
572 624 1.202639 GGAACCTGGTTTTTGCCCTTG 60.203 52.381 14.28 0.00 0.00 3.61
573 625 1.128200 GGAACCTGGTTTTTGCCCTT 58.872 50.000 14.28 0.00 0.00 3.95
574 626 0.264657 AGGAACCTGGTTTTTGCCCT 59.735 50.000 14.28 11.93 0.00 5.19
575 627 0.679505 GAGGAACCTGGTTTTTGCCC 59.320 55.000 14.28 9.72 0.00 5.36
576 628 0.679505 GGAGGAACCTGGTTTTTGCC 59.320 55.000 14.28 10.10 35.41 4.52
577 629 1.408969 TGGAGGAACCTGGTTTTTGC 58.591 50.000 14.28 10.64 39.86 3.68
578 630 2.562738 GGATGGAGGAACCTGGTTTTTG 59.437 50.000 14.28 0.00 39.86 2.44
579 631 2.178984 TGGATGGAGGAACCTGGTTTTT 59.821 45.455 14.28 5.00 39.86 1.94
580 632 1.786441 TGGATGGAGGAACCTGGTTTT 59.214 47.619 14.28 5.38 39.86 2.43
581 633 1.455822 TGGATGGAGGAACCTGGTTT 58.544 50.000 14.28 0.00 39.86 3.27
582 634 1.355720 CTTGGATGGAGGAACCTGGTT 59.644 52.381 12.82 12.82 39.86 3.67
583 635 0.995024 CTTGGATGGAGGAACCTGGT 59.005 55.000 0.00 0.00 39.86 4.00
584 636 0.394899 GCTTGGATGGAGGAACCTGG 60.395 60.000 0.00 0.00 39.86 4.45
585 637 0.745845 CGCTTGGATGGAGGAACCTG 60.746 60.000 0.00 0.00 39.86 4.00
586 638 1.604378 CGCTTGGATGGAGGAACCT 59.396 57.895 0.00 0.00 39.86 3.50
587 639 1.452108 CCGCTTGGATGGAGGAACC 60.452 63.158 0.00 0.00 35.09 3.62
588 640 2.115291 GCCGCTTGGATGGAGGAAC 61.115 63.158 0.00 0.00 33.02 3.62
589 641 2.272146 GCCGCTTGGATGGAGGAA 59.728 61.111 0.00 0.00 33.02 3.36
590 642 3.797353 GGCCGCTTGGATGGAGGA 61.797 66.667 0.00 0.00 33.02 3.71
591 643 3.643595 TTGGCCGCTTGGATGGAGG 62.644 63.158 0.00 0.00 33.02 4.30
592 644 1.678635 TTTGGCCGCTTGGATGGAG 60.679 57.895 0.00 0.00 33.02 3.86
593 645 1.976474 GTTTGGCCGCTTGGATGGA 60.976 57.895 0.00 0.00 33.02 3.41
594 646 2.573340 GTTTGGCCGCTTGGATGG 59.427 61.111 0.00 0.00 33.02 3.51
595 647 1.535204 AAGGTTTGGCCGCTTGGATG 61.535 55.000 0.00 0.00 43.70 3.51
596 648 1.228862 AAGGTTTGGCCGCTTGGAT 60.229 52.632 0.00 0.00 43.70 3.41
597 649 1.901464 GAAGGTTTGGCCGCTTGGA 60.901 57.895 0.00 0.00 43.70 3.53
598 650 2.146073 CTGAAGGTTTGGCCGCTTGG 62.146 60.000 0.00 0.00 43.70 3.61
599 651 1.172180 TCTGAAGGTTTGGCCGCTTG 61.172 55.000 0.00 0.00 43.70 4.01
600 652 1.150536 TCTGAAGGTTTGGCCGCTT 59.849 52.632 0.00 0.00 43.70 4.68
601 653 1.600916 GTCTGAAGGTTTGGCCGCT 60.601 57.895 0.00 0.00 43.70 5.52
602 654 1.244019 ATGTCTGAAGGTTTGGCCGC 61.244 55.000 0.00 0.00 43.70 6.53
603 655 0.804989 GATGTCTGAAGGTTTGGCCG 59.195 55.000 0.00 0.00 43.70 6.13
604 656 0.804989 CGATGTCTGAAGGTTTGGCC 59.195 55.000 0.00 0.00 37.58 5.36
605 657 1.808411 TCGATGTCTGAAGGTTTGGC 58.192 50.000 0.00 0.00 0.00 4.52
606 658 3.664107 TCTTCGATGTCTGAAGGTTTGG 58.336 45.455 3.19 0.00 42.43 3.28
607 659 5.466728 TCTTTCTTCGATGTCTGAAGGTTTG 59.533 40.000 3.19 0.00 42.43 2.93
608 660 5.467063 GTCTTTCTTCGATGTCTGAAGGTTT 59.533 40.000 3.19 0.00 42.43 3.27
609 661 4.991687 GTCTTTCTTCGATGTCTGAAGGTT 59.008 41.667 3.19 0.00 42.43 3.50
610 662 4.039245 TGTCTTTCTTCGATGTCTGAAGGT 59.961 41.667 3.19 0.00 42.43 3.50
611 663 4.560128 TGTCTTTCTTCGATGTCTGAAGG 58.440 43.478 3.19 0.00 42.43 3.46
612 664 6.718454 AATGTCTTTCTTCGATGTCTGAAG 57.282 37.500 0.00 0.00 43.31 3.02
613 665 8.034804 TGATAATGTCTTTCTTCGATGTCTGAA 58.965 33.333 0.00 0.00 0.00 3.02
614 666 7.547227 TGATAATGTCTTTCTTCGATGTCTGA 58.453 34.615 0.00 0.00 0.00 3.27
615 667 7.761651 TGATAATGTCTTTCTTCGATGTCTG 57.238 36.000 0.00 0.00 0.00 3.51
616 668 8.037758 ACTTGATAATGTCTTTCTTCGATGTCT 58.962 33.333 0.00 0.00 0.00 3.41
617 669 8.190888 ACTTGATAATGTCTTTCTTCGATGTC 57.809 34.615 0.00 0.00 0.00 3.06
618 670 7.009631 CGACTTGATAATGTCTTTCTTCGATGT 59.990 37.037 0.00 0.00 0.00 3.06
619 671 7.333269 CGACTTGATAATGTCTTTCTTCGATG 58.667 38.462 0.00 0.00 0.00 3.84
620 672 6.477033 CCGACTTGATAATGTCTTTCTTCGAT 59.523 38.462 0.00 0.00 0.00 3.59
621 673 5.805486 CCGACTTGATAATGTCTTTCTTCGA 59.195 40.000 0.00 0.00 0.00 3.71
622 674 5.805486 TCCGACTTGATAATGTCTTTCTTCG 59.195 40.000 0.00 0.00 0.00 3.79
623 675 6.814146 ACTCCGACTTGATAATGTCTTTCTTC 59.186 38.462 0.00 0.00 0.00 2.87
624 676 6.702329 ACTCCGACTTGATAATGTCTTTCTT 58.298 36.000 0.00 0.00 0.00 2.52
625 677 6.071334 TGACTCCGACTTGATAATGTCTTTCT 60.071 38.462 0.00 0.00 0.00 2.52
626 678 6.100004 TGACTCCGACTTGATAATGTCTTTC 58.900 40.000 0.00 0.00 0.00 2.62
627 679 6.037786 TGACTCCGACTTGATAATGTCTTT 57.962 37.500 0.00 0.00 0.00 2.52
628 680 5.419155 TCTGACTCCGACTTGATAATGTCTT 59.581 40.000 0.00 0.00 0.00 3.01
629 681 4.950475 TCTGACTCCGACTTGATAATGTCT 59.050 41.667 0.00 0.00 0.00 3.41
630 682 5.250235 TCTGACTCCGACTTGATAATGTC 57.750 43.478 0.00 0.00 0.00 3.06
631 683 5.661056 TTCTGACTCCGACTTGATAATGT 57.339 39.130 0.00 0.00 0.00 2.71
632 684 5.006165 GCTTTCTGACTCCGACTTGATAATG 59.994 44.000 0.00 0.00 0.00 1.90
633 685 5.112686 GCTTTCTGACTCCGACTTGATAAT 58.887 41.667 0.00 0.00 0.00 1.28
634 686 4.495422 GCTTTCTGACTCCGACTTGATAA 58.505 43.478 0.00 0.00 0.00 1.75
635 687 3.427638 CGCTTTCTGACTCCGACTTGATA 60.428 47.826 0.00 0.00 0.00 2.15
636 688 2.672478 CGCTTTCTGACTCCGACTTGAT 60.672 50.000 0.00 0.00 0.00 2.57
637 689 1.335964 CGCTTTCTGACTCCGACTTGA 60.336 52.381 0.00 0.00 0.00 3.02
638 690 1.063806 CGCTTTCTGACTCCGACTTG 58.936 55.000 0.00 0.00 0.00 3.16
639 691 0.959553 TCGCTTTCTGACTCCGACTT 59.040 50.000 0.00 0.00 0.00 3.01
640 692 0.241481 GTCGCTTTCTGACTCCGACT 59.759 55.000 12.85 0.00 43.36 4.18
641 693 1.066114 CGTCGCTTTCTGACTCCGAC 61.066 60.000 11.04 11.04 43.29 4.79
642 694 1.209383 CGTCGCTTTCTGACTCCGA 59.791 57.895 0.00 0.00 34.17 4.55
643 695 1.066114 GTCGTCGCTTTCTGACTCCG 61.066 60.000 0.00 0.00 34.17 4.63
644 696 0.241481 AGTCGTCGCTTTCTGACTCC 59.759 55.000 0.00 0.00 37.07 3.85
645 697 2.160022 ACTAGTCGTCGCTTTCTGACTC 59.840 50.000 0.00 0.00 41.60 3.36
646 698 2.095668 CACTAGTCGTCGCTTTCTGACT 60.096 50.000 0.00 0.00 43.62 3.41
647 699 2.243407 CACTAGTCGTCGCTTTCTGAC 58.757 52.381 0.00 0.00 0.00 3.51
648 700 1.199327 CCACTAGTCGTCGCTTTCTGA 59.801 52.381 0.00 0.00 0.00 3.27
649 701 1.068472 ACCACTAGTCGTCGCTTTCTG 60.068 52.381 0.00 0.00 0.00 3.02
650 702 1.199558 GACCACTAGTCGTCGCTTTCT 59.800 52.381 4.82 0.00 35.30 2.52
651 703 1.615502 GACCACTAGTCGTCGCTTTC 58.384 55.000 4.82 0.00 35.30 2.62
652 704 3.788775 GACCACTAGTCGTCGCTTT 57.211 52.632 4.82 0.00 35.30 3.51
660 712 6.698380 TGGATGTAGAAAAAGACCACTAGTC 58.302 40.000 0.00 0.00 46.71 2.59
661 713 6.681729 TGGATGTAGAAAAAGACCACTAGT 57.318 37.500 0.00 0.00 0.00 2.57
662 714 6.092807 GCTTGGATGTAGAAAAAGACCACTAG 59.907 42.308 0.00 0.00 0.00 2.57
663 715 5.938125 GCTTGGATGTAGAAAAAGACCACTA 59.062 40.000 0.00 0.00 0.00 2.74
664 716 4.762251 GCTTGGATGTAGAAAAAGACCACT 59.238 41.667 0.00 0.00 0.00 4.00
665 717 4.378459 CGCTTGGATGTAGAAAAAGACCAC 60.378 45.833 0.00 0.00 0.00 4.16
666 718 3.751175 CGCTTGGATGTAGAAAAAGACCA 59.249 43.478 0.00 0.00 0.00 4.02
667 719 3.127030 CCGCTTGGATGTAGAAAAAGACC 59.873 47.826 0.00 0.00 33.02 3.85
668 720 3.426292 GCCGCTTGGATGTAGAAAAAGAC 60.426 47.826 0.00 0.00 33.02 3.01
669 721 2.747446 GCCGCTTGGATGTAGAAAAAGA 59.253 45.455 0.00 0.00 33.02 2.52
670 722 2.159379 GGCCGCTTGGATGTAGAAAAAG 60.159 50.000 0.00 0.00 33.02 2.27
671 723 1.816224 GGCCGCTTGGATGTAGAAAAA 59.184 47.619 0.00 0.00 33.02 1.94
672 724 1.271652 TGGCCGCTTGGATGTAGAAAA 60.272 47.619 0.00 0.00 33.02 2.29
673 725 0.326595 TGGCCGCTTGGATGTAGAAA 59.673 50.000 0.00 0.00 33.02 2.52
674 726 0.326595 TTGGCCGCTTGGATGTAGAA 59.673 50.000 0.00 0.00 33.02 2.10
675 727 0.326595 TTTGGCCGCTTGGATGTAGA 59.673 50.000 0.00 0.00 33.02 2.59
676 728 0.451783 GTTTGGCCGCTTGGATGTAG 59.548 55.000 0.00 0.00 33.02 2.74
677 729 0.963355 GGTTTGGCCGCTTGGATGTA 60.963 55.000 0.00 0.00 33.02 2.29
678 730 2.275380 GGTTTGGCCGCTTGGATGT 61.275 57.895 0.00 0.00 33.02 3.06
679 731 2.573340 GGTTTGGCCGCTTGGATG 59.427 61.111 0.00 0.00 33.02 3.51
680 732 2.679996 GGGTTTGGCCGCTTGGAT 60.680 61.111 0.00 0.00 38.44 3.41
681 733 3.740495 TTGGGTTTGGCCGCTTGGA 62.740 57.895 0.00 0.00 38.44 3.53
682 734 3.230245 TTGGGTTTGGCCGCTTGG 61.230 61.111 0.00 0.00 38.44 3.61
683 735 2.028925 GTTGGGTTTGGCCGCTTG 59.971 61.111 0.00 0.00 38.44 4.01
741 796 2.107903 GCTTGCCAGCTCTGCTCTC 61.108 63.158 1.78 0.00 43.51 3.20
1098 1558 1.112113 AGCCGATGAAGATGTACGGT 58.888 50.000 0.00 0.00 44.48 4.83
1481 2014 1.007734 GCGCCGGTTATCTCATCGA 60.008 57.895 1.90 0.00 0.00 3.59
1482 2015 2.365068 CGCGCCGGTTATCTCATCG 61.365 63.158 1.90 0.00 0.00 3.84
1483 2016 2.658707 GCGCGCCGGTTATCTCATC 61.659 63.158 23.24 0.00 0.00 2.92
1484 2017 2.661866 GCGCGCCGGTTATCTCAT 60.662 61.111 23.24 0.00 0.00 2.90
1485 2018 4.136511 TGCGCGCCGGTTATCTCA 62.137 61.111 30.77 1.61 0.00 3.27
1486 2019 3.627218 GTGCGCGCCGGTTATCTC 61.627 66.667 30.77 3.75 0.00 2.75
1515 2048 4.514577 AGATCTCAACGCCGCCGG 62.515 66.667 0.00 0.00 39.22 6.13
1516 2049 3.257561 CAGATCTCAACGCCGCCG 61.258 66.667 0.00 0.00 41.14 6.46
1517 2050 2.125512 ACAGATCTCAACGCCGCC 60.126 61.111 0.00 0.00 0.00 6.13
1572 2105 4.323417 TCGAATTAGAGAGCAGGCAAAAA 58.677 39.130 0.00 0.00 0.00 1.94
1636 2169 3.004106 CGACTGGGGAGTAGTTAATACCG 59.996 52.174 0.00 0.00 34.67 4.02
1780 2845 3.079578 CTCATCACTTTGTGTCATGCCT 58.920 45.455 0.00 0.00 34.79 4.75
1799 2868 4.554973 GTCATTTCGCACAAACTAATGCTC 59.445 41.667 0.00 0.00 39.79 4.26
1825 2900 4.156182 GTTTACAGCAATCGTGTAAAGCC 58.844 43.478 8.10 0.00 46.13 4.35
1878 2953 2.290641 AGACCGAAATTTCACTGTGCAC 59.709 45.455 17.99 10.75 0.00 4.57
1926 3009 8.798975 TTATGAAGGAAGGGAGTATGTTCTAT 57.201 34.615 0.00 0.00 0.00 1.98
1984 3097 9.787532 CTTGTTCATTTATTTTCATCCGTATGT 57.212 29.630 0.00 0.00 34.50 2.29
1985 3098 8.745837 GCTTGTTCATTTATTTTCATCCGTATG 58.254 33.333 0.00 0.00 0.00 2.39
1987 3100 7.753132 GTGCTTGTTCATTTATTTTCATCCGTA 59.247 33.333 0.00 0.00 0.00 4.02
1989 3102 6.585702 TGTGCTTGTTCATTTATTTTCATCCG 59.414 34.615 0.00 0.00 0.00 4.18
1990 3103 7.599998 AGTGTGCTTGTTCATTTATTTTCATCC 59.400 33.333 0.00 0.00 0.00 3.51
1991 3104 8.524870 AGTGTGCTTGTTCATTTATTTTCATC 57.475 30.769 0.00 0.00 0.00 2.92
1992 3105 9.979578 TTAGTGTGCTTGTTCATTTATTTTCAT 57.020 25.926 0.00 0.00 0.00 2.57
1993 3106 9.809096 TTTAGTGTGCTTGTTCATTTATTTTCA 57.191 25.926 0.00 0.00 0.00 2.69
2000 3115 7.041107 ACATGTTTTAGTGTGCTTGTTCATTT 58.959 30.769 0.00 0.00 0.00 2.32
2002 3117 6.039717 AGACATGTTTTAGTGTGCTTGTTCAT 59.960 34.615 0.00 0.00 0.00 2.57
2057 3172 9.917129 TCTGTTCACAAATATAAGACGTTCTAA 57.083 29.630 0.00 0.00 0.00 2.10
2058 3173 9.569167 CTCTGTTCACAAATATAAGACGTTCTA 57.431 33.333 0.00 0.00 0.00 2.10
2060 3175 7.201530 CCCTCTGTTCACAAATATAAGACGTTC 60.202 40.741 0.00 0.00 0.00 3.95
2061 3176 6.594159 CCCTCTGTTCACAAATATAAGACGTT 59.406 38.462 0.00 0.00 0.00 3.99
2062 3177 6.070995 TCCCTCTGTTCACAAATATAAGACGT 60.071 38.462 0.00 0.00 0.00 4.34
2064 3179 7.331791 ACTCCCTCTGTTCACAAATATAAGAC 58.668 38.462 0.00 0.00 0.00 3.01
2065 3180 7.496346 ACTCCCTCTGTTCACAAATATAAGA 57.504 36.000 0.00 0.00 0.00 2.10
2075 3196 8.738645 AATTATGATTTACTCCCTCTGTTCAC 57.261 34.615 0.00 0.00 0.00 3.18
2099 3220 9.982651 GATCAATTCACCTACTAGTTGCTATAA 57.017 33.333 0.00 0.00 0.00 0.98
2100 3221 9.143155 TGATCAATTCACCTACTAGTTGCTATA 57.857 33.333 0.00 0.00 0.00 1.31
2101 3222 8.023021 TGATCAATTCACCTACTAGTTGCTAT 57.977 34.615 0.00 0.00 0.00 2.97
2102 3223 7.418337 TGATCAATTCACCTACTAGTTGCTA 57.582 36.000 0.00 0.00 0.00 3.49
2103 3224 6.299805 TGATCAATTCACCTACTAGTTGCT 57.700 37.500 0.00 0.00 0.00 3.91
2104 3225 6.763135 TGATGATCAATTCACCTACTAGTTGC 59.237 38.462 0.00 0.00 37.11 4.17
2105 3226 8.899427 ATGATGATCAATTCACCTACTAGTTG 57.101 34.615 0.00 0.00 37.11 3.16
2110 3231 9.334947 CTGTTTATGATGATCAATTCACCTACT 57.665 33.333 0.00 0.00 37.11 2.57
2122 3243 5.972973 TGCGAAATTGCTGTTTATGATGATC 59.027 36.000 0.00 0.00 35.36 2.92
2124 3245 5.094812 GTGCGAAATTGCTGTTTATGATGA 58.905 37.500 0.00 0.00 35.36 2.92
2125 3246 4.858140 TGTGCGAAATTGCTGTTTATGATG 59.142 37.500 0.00 0.00 35.36 3.07
2126 3247 4.858692 GTGTGCGAAATTGCTGTTTATGAT 59.141 37.500 0.00 0.00 35.36 2.45
2131 3252 2.192624 GTGTGTGCGAAATTGCTGTTT 58.807 42.857 0.00 0.00 35.36 2.83
2172 3296 1.083489 TTCGCGGTAGCATCAAAAGG 58.917 50.000 6.13 0.00 45.49 3.11
2176 3300 6.203808 AGTATATATTCGCGGTAGCATCAA 57.796 37.500 6.13 0.00 45.49 2.57
2182 3306 4.330894 TGGACGAGTATATATTCGCGGTAG 59.669 45.833 22.99 1.81 38.74 3.18
2186 3310 3.423571 GGTGGACGAGTATATATTCGCG 58.576 50.000 22.99 12.58 38.74 5.87
2201 3325 4.850347 AGAGTATATAAGTGCGGTGGAC 57.150 45.455 0.00 0.00 0.00 4.02
2213 3337 5.731957 TGCCAATTGCGGTAGAGTATATA 57.268 39.130 0.00 0.00 45.60 0.86
2214 3338 4.617253 TGCCAATTGCGGTAGAGTATAT 57.383 40.909 0.00 0.00 45.60 0.86
2215 3339 4.039852 TCATGCCAATTGCGGTAGAGTATA 59.960 41.667 0.00 0.00 45.60 1.47
2216 3340 3.141398 CATGCCAATTGCGGTAGAGTAT 58.859 45.455 0.00 0.00 45.60 2.12
2217 3341 2.169561 TCATGCCAATTGCGGTAGAGTA 59.830 45.455 0.00 0.00 45.60 2.59
2218 3342 1.065491 TCATGCCAATTGCGGTAGAGT 60.065 47.619 0.00 0.00 45.60 3.24
2219 3343 1.667236 TCATGCCAATTGCGGTAGAG 58.333 50.000 0.00 0.00 45.60 2.43
2220 3344 1.742831 GTTCATGCCAATTGCGGTAGA 59.257 47.619 0.00 0.00 45.60 2.59
2221 3345 1.472082 TGTTCATGCCAATTGCGGTAG 59.528 47.619 0.00 0.00 45.60 3.18
2222 3346 1.201181 GTGTTCATGCCAATTGCGGTA 59.799 47.619 0.00 0.00 45.60 4.02
2223 3347 0.038343 GTGTTCATGCCAATTGCGGT 60.038 50.000 0.00 0.00 45.60 5.68
2224 3348 1.072116 CGTGTTCATGCCAATTGCGG 61.072 55.000 0.00 0.00 45.60 5.69
2225 3349 1.676438 GCGTGTTCATGCCAATTGCG 61.676 55.000 0.00 0.00 45.60 4.85
2226 3350 0.388907 AGCGTGTTCATGCCAATTGC 60.389 50.000 12.54 0.00 41.77 3.56
2227 3351 1.200716 AGAGCGTGTTCATGCCAATTG 59.799 47.619 12.54 0.00 0.00 2.32
2228 3352 1.538047 AGAGCGTGTTCATGCCAATT 58.462 45.000 12.54 0.00 0.00 2.32
2229 3353 1.538047 AAGAGCGTGTTCATGCCAAT 58.462 45.000 12.54 0.00 0.00 3.16
2230 3354 1.317613 AAAGAGCGTGTTCATGCCAA 58.682 45.000 12.54 0.00 0.00 4.52
2231 3355 1.317613 AAAAGAGCGTGTTCATGCCA 58.682 45.000 12.54 0.00 0.00 4.92
2232 3356 2.422276 AAAAAGAGCGTGTTCATGCC 57.578 45.000 12.54 5.63 0.00 4.40
2233 3357 4.974591 AGATAAAAAGAGCGTGTTCATGC 58.025 39.130 8.73 8.73 0.00 4.06
2234 3358 7.518161 TGTAAGATAAAAAGAGCGTGTTCATG 58.482 34.615 0.00 0.00 0.00 3.07
2235 3359 7.667043 TGTAAGATAAAAAGAGCGTGTTCAT 57.333 32.000 0.00 0.00 0.00 2.57
2236 3360 7.667043 ATGTAAGATAAAAAGAGCGTGTTCA 57.333 32.000 0.00 0.00 0.00 3.18
2237 3361 9.851043 GATATGTAAGATAAAAAGAGCGTGTTC 57.149 33.333 0.00 0.00 0.00 3.18
2238 3362 9.378551 TGATATGTAAGATAAAAAGAGCGTGTT 57.621 29.630 0.00 0.00 0.00 3.32
2239 3363 8.942338 TGATATGTAAGATAAAAAGAGCGTGT 57.058 30.769 0.00 0.00 0.00 4.49
2257 3381 9.295825 TCAACCTAAACAAGTGATTTGATATGT 57.704 29.630 0.00 0.00 39.21 2.29
2262 3386 9.349713 ACTAATCAACCTAAACAAGTGATTTGA 57.650 29.630 11.29 0.00 39.21 2.69
2286 3410 9.823647 CATGATTGTCTCACTAGGTAAAATACT 57.176 33.333 0.00 0.00 36.48 2.12
2287 3411 9.601217 ACATGATTGTCTCACTAGGTAAAATAC 57.399 33.333 0.00 0.00 36.48 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.