Multiple sequence alignment - TraesCS7D01G387400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G387400 chr7D 100.000 3032 0 0 1 3032 501114983 501118014 0.000000e+00 5600.0
1 TraesCS7D01G387400 chr7D 80.967 331 59 4 1294 1622 595069257 595069585 3.000000e-65 259.0
2 TraesCS7D01G387400 chr7B 91.066 1041 55 16 1101 2136 530607392 530608399 0.000000e+00 1373.0
3 TraesCS7D01G387400 chr7B 90.909 671 38 12 1101 1766 530440894 530441546 0.000000e+00 880.0
4 TraesCS7D01G387400 chr7B 89.273 550 38 6 1754 2286 530443559 530444104 0.000000e+00 669.0
5 TraesCS7D01G387400 chr7B 91.515 495 27 9 628 1110 530606877 530607368 0.000000e+00 667.0
6 TraesCS7D01G387400 chr7B 89.258 512 52 2 2520 3031 530462353 530462861 3.300000e-179 638.0
7 TraesCS7D01G387400 chr7B 89.084 513 53 2 2520 3032 530610073 530610582 4.260000e-178 634.0
8 TraesCS7D01G387400 chr7B 82.440 746 68 22 413 1110 530440140 530440870 7.240000e-166 593.0
9 TraesCS7D01G387400 chr7B 85.874 446 62 1 2574 3018 561050326 561050771 9.840000e-130 473.0
10 TraesCS7D01G387400 chr7A 85.099 557 53 12 8 561 567607453 567607982 2.660000e-150 542.0
11 TraesCS7D01G387400 chr7A 94.737 304 14 1 809 1110 567608091 567608394 3.540000e-129 472.0
12 TraesCS7D01G387400 chr7A 81.957 327 55 3 1294 1618 688181606 688181930 1.070000e-69 274.0
13 TraesCS7D01G387400 chr7A 90.683 161 12 3 1101 1261 567608418 567608575 8.520000e-51 211.0
14 TraesCS7D01G387400 chr6D 85.249 461 58 8 2575 3032 266906615 266906162 1.650000e-127 466.0
15 TraesCS7D01G387400 chr3D 84.130 460 67 6 2575 3032 147451031 147451486 9.980000e-120 440.0
16 TraesCS7D01G387400 chr6B 84.165 461 64 7 2575 3032 414906351 414905897 3.590000e-119 438.0
17 TraesCS7D01G387400 chr6A 83.962 424 58 8 2599 3019 379250604 379250188 6.090000e-107 398.0
18 TraesCS7D01G387400 chr3B 82.289 463 68 12 2575 3032 215082205 215081752 3.670000e-104 388.0
19 TraesCS7D01G387400 chr3B 79.955 449 80 8 2575 3019 691282765 691283207 3.770000e-84 322.0
20 TraesCS7D01G387400 chr2D 84.444 315 46 2 1294 1608 27837052 27837363 1.060000e-79 307.0
21 TraesCS7D01G387400 chr2A 84.691 307 44 2 1294 1600 29989776 29990079 1.370000e-78 303.0
22 TraesCS7D01G387400 chr2B 83.333 324 51 2 1294 1617 44159066 44159386 2.290000e-76 296.0
23 TraesCS7D01G387400 chr4D 81.269 331 58 4 1294 1622 414328435 414328107 6.450000e-67 265.0
24 TraesCS7D01G387400 chr4D 84.615 65 10 0 1734 1798 442248233 442248169 7.020000e-07 65.8
25 TraesCS7D01G387400 chr4D 73.837 172 36 8 1734 1901 442220918 442220752 3.260000e-05 60.2
26 TraesCS7D01G387400 chr4D 73.684 171 38 7 1734 1901 442222434 442222268 3.260000e-05 60.2
27 TraesCS7D01G387400 chr4B 80.864 324 62 0 1294 1617 510481965 510481642 3.880000e-64 255.0
28 TraesCS7D01G387400 chr4B 85.938 64 9 0 1739 1802 547094314 547094377 5.420000e-08 69.4
29 TraesCS7D01G387400 chr4B 73.529 170 40 5 1734 1901 550432497 550432331 3.260000e-05 60.2
30 TraesCS7D01G387400 chr4B 73.684 171 38 7 1734 1901 550487163 550486997 3.260000e-05 60.2
31 TraesCS7D01G387400 chr4B 86.538 52 6 1 1140 1190 547309563 547309614 4.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G387400 chr7D 501114983 501118014 3031 False 5600.000000 5600 100.000000 1 3032 1 chr7D.!!$F1 3031
1 TraesCS7D01G387400 chr7B 530606877 530610582 3705 False 891.333333 1373 90.555000 628 3032 3 chr7B.!!$F4 2404
2 TraesCS7D01G387400 chr7B 530440140 530444104 3964 False 714.000000 880 87.540667 413 2286 3 chr7B.!!$F3 1873
3 TraesCS7D01G387400 chr7B 530462353 530462861 508 False 638.000000 638 89.258000 2520 3031 1 chr7B.!!$F1 511
4 TraesCS7D01G387400 chr7A 567607453 567608575 1122 False 408.333333 542 90.173000 8 1261 3 chr7A.!!$F2 1253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
107 108 0.031314 AGTCGCCATATGAGCAGTCG 59.969 55.0 3.65 0.0 0.00 4.18 F
143 144 0.038251 GTCTGTCGAGGTGATGCACA 60.038 55.0 0.00 0.0 35.86 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1822 3947 0.179000 GAGCCCTTGACATCCATCGT 59.821 55.0 0.00 0.0 0.00 3.73 R
2065 4190 0.609131 ACAACCTGTATGCCCACAGC 60.609 55.0 8.85 0.0 43.82 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.977427 GGCTTGAACAAAGACCGAAATT 58.023 40.909 0.00 0.00 38.05 1.82
43 44 5.116069 GGCTTGAACAAAGACCGAAATTA 57.884 39.130 0.00 0.00 38.05 1.40
51 52 1.488390 AGACCGAAATTAGGCCCGTA 58.512 50.000 0.00 0.00 0.00 4.02
59 60 2.521105 ATTAGGCCCGTAGTAAAGCG 57.479 50.000 0.00 0.00 0.00 4.68
60 61 0.461135 TTAGGCCCGTAGTAAAGCGG 59.539 55.000 0.00 0.00 46.80 5.52
76 77 2.042464 AGCGGGATTGCATCTAAGAGA 58.958 47.619 0.00 0.00 37.31 3.10
102 103 4.004314 TCTAGTAGAGTCGCCATATGAGC 58.996 47.826 3.65 5.22 0.00 4.26
103 104 2.587522 AGTAGAGTCGCCATATGAGCA 58.412 47.619 3.65 0.00 0.00 4.26
104 105 2.556189 AGTAGAGTCGCCATATGAGCAG 59.444 50.000 3.65 3.55 0.00 4.24
105 106 1.407936 AGAGTCGCCATATGAGCAGT 58.592 50.000 3.65 0.98 0.00 4.40
106 107 1.339610 AGAGTCGCCATATGAGCAGTC 59.660 52.381 3.65 9.00 0.00 3.51
107 108 0.031314 AGTCGCCATATGAGCAGTCG 59.969 55.000 3.65 0.00 0.00 4.18
108 109 0.941463 GTCGCCATATGAGCAGTCGG 60.941 60.000 3.65 0.00 0.00 4.79
109 110 2.313172 CGCCATATGAGCAGTCGGC 61.313 63.158 3.65 0.00 45.30 5.54
118 119 4.225497 GCAGTCGGCATAAGGCTT 57.775 55.556 4.58 4.58 43.97 4.35
119 120 3.379650 GCAGTCGGCATAAGGCTTA 57.620 52.632 9.79 9.79 43.97 3.09
120 121 1.884235 GCAGTCGGCATAAGGCTTAT 58.116 50.000 13.96 13.96 43.97 1.73
121 122 1.532868 GCAGTCGGCATAAGGCTTATG 59.467 52.381 33.04 33.04 44.55 1.90
122 123 2.806745 GCAGTCGGCATAAGGCTTATGA 60.807 50.000 38.50 22.27 44.52 2.15
123 124 3.466836 CAGTCGGCATAAGGCTTATGAA 58.533 45.455 38.50 24.54 44.52 2.57
124 125 3.496130 CAGTCGGCATAAGGCTTATGAAG 59.504 47.826 38.50 30.71 44.52 3.02
125 126 3.134804 AGTCGGCATAAGGCTTATGAAGT 59.865 43.478 38.50 25.50 44.52 3.01
129 130 4.455606 GGCATAAGGCTTATGAAGTCTGT 58.544 43.478 38.50 8.24 44.09 3.41
141 142 0.969149 AAGTCTGTCGAGGTGATGCA 59.031 50.000 0.00 0.00 0.00 3.96
143 144 0.038251 GTCTGTCGAGGTGATGCACA 60.038 55.000 0.00 0.00 35.86 4.57
156 157 3.431572 GTGATGCACAAACTCAGAGTCTC 59.568 47.826 2.72 0.00 34.08 3.36
171 172 5.049167 CAGAGTCTCCATATTGACTGCTTC 58.951 45.833 7.32 0.00 42.79 3.86
173 174 3.776969 AGTCTCCATATTGACTGCTTCCA 59.223 43.478 0.00 0.00 41.40 3.53
204 205 4.156008 GGACCCACTTGTCAATGTAACATC 59.844 45.833 0.00 0.00 36.97 3.06
252 253 4.802051 CATGTGAGGTGGGGGCCG 62.802 72.222 0.00 0.00 0.00 6.13
264 265 1.658114 GGGGCCGTGTGAAGTTTTC 59.342 57.895 0.00 0.00 0.00 2.29
265 266 0.822121 GGGGCCGTGTGAAGTTTTCT 60.822 55.000 0.00 0.00 0.00 2.52
268 269 2.459934 GGCCGTGTGAAGTTTTCTTTG 58.540 47.619 0.00 0.00 40.61 2.77
276 277 2.926838 TGAAGTTTTCTTTGCGCCAAAC 59.073 40.909 4.18 6.54 40.61 2.93
289 290 2.098117 GCGCCAAACATTTGAGCTAGAT 59.902 45.455 5.91 0.00 40.55 1.98
298 299 5.888105 ACATTTGAGCTAGATGAAATGCAC 58.112 37.500 26.14 0.00 38.72 4.57
305 306 3.887716 GCTAGATGAAATGCACTCCCAAT 59.112 43.478 0.00 0.00 0.00 3.16
346 347 1.965414 TATGGAGGCCAAGAGGTCAA 58.035 50.000 5.01 0.00 43.99 3.18
348 349 0.110486 TGGAGGCCAAGAGGTCAAAC 59.890 55.000 5.01 0.00 43.99 2.93
351 352 1.882623 GAGGCCAAGAGGTCAAACTTG 59.117 52.381 5.01 0.00 43.99 3.16
361 362 1.177401 GTCAAACTTGGAGGATGCCC 58.823 55.000 0.00 0.00 0.00 5.36
412 414 2.079925 CTGCTAGAGTGCCTTTTGGTC 58.920 52.381 0.00 0.00 42.99 4.02
417 419 3.515602 AGAGTGCCTTTTGGTCAGAAT 57.484 42.857 0.00 0.00 42.99 2.40
419 421 2.154462 AGTGCCTTTTGGTCAGAATCG 58.846 47.619 0.00 0.00 42.99 3.34
420 422 0.881118 TGCCTTTTGGTCAGAATCGC 59.119 50.000 0.00 0.00 42.99 4.58
425 427 0.810648 TTTGGTCAGAATCGCCATGC 59.189 50.000 0.00 0.00 31.71 4.06
444 446 3.138304 TGCTGACAGTTATTGTGGTGAC 58.862 45.455 3.99 0.00 41.05 3.67
465 467 1.065928 GGCAGTATGACGACTCCGG 59.934 63.158 0.00 0.00 39.69 5.14
536 538 2.698763 GGAGTCCACGTCCGACCTC 61.699 68.421 3.60 6.13 0.00 3.85
547 549 3.131577 ACGTCCGACCTCTGCATAATAAA 59.868 43.478 0.00 0.00 0.00 1.40
548 550 3.736252 CGTCCGACCTCTGCATAATAAAG 59.264 47.826 0.00 0.00 0.00 1.85
564 567 9.217223 GCATAATAAAGGTGTAATAAACGTGTG 57.783 33.333 0.00 0.00 0.00 3.82
571 574 4.024725 GGTGTAATAAACGTGTGTTGCTCA 60.025 41.667 5.03 0.00 38.62 4.26
572 575 5.137403 GTGTAATAAACGTGTGTTGCTCAG 58.863 41.667 5.03 0.00 38.62 3.35
614 632 9.904198 TTTTCCTGAAAAAGAATGAATTTTCCT 57.096 25.926 2.68 0.00 42.23 3.36
615 633 9.546428 TTTCCTGAAAAAGAATGAATTTTCCTC 57.454 29.630 8.11 0.00 42.23 3.71
616 634 8.482852 TCCTGAAAAAGAATGAATTTTCCTCT 57.517 30.769 8.11 0.00 42.23 3.69
617 635 8.927411 TCCTGAAAAAGAATGAATTTTCCTCTT 58.073 29.630 8.11 0.00 42.23 2.85
618 636 9.551734 CCTGAAAAAGAATGAATTTTCCTCTTT 57.448 29.630 8.11 9.81 42.23 2.52
622 640 9.770097 AAAAAGAATGAATTTTCCTCTTTCTCC 57.230 29.630 13.52 0.00 37.36 3.71
623 641 8.482852 AAAGAATGAATTTTCCTCTTTCTCCA 57.517 30.769 9.81 0.00 36.70 3.86
624 642 8.482852 AAGAATGAATTTTCCTCTTTCTCCAA 57.517 30.769 2.58 0.00 36.70 3.53
625 643 8.120140 AGAATGAATTTTCCTCTTTCTCCAAG 57.880 34.615 0.00 0.00 34.09 3.61
626 644 6.847421 ATGAATTTTCCTCTTTCTCCAAGG 57.153 37.500 0.00 0.00 32.64 3.61
628 646 3.593442 TTTTCCTCTTTCTCCAAGGCA 57.407 42.857 0.00 0.00 32.64 4.75
629 647 2.867109 TTCCTCTTTCTCCAAGGCAG 57.133 50.000 0.00 0.00 32.64 4.85
632 650 1.003355 TCTTTCTCCAAGGCAGCCG 60.003 57.895 5.55 0.00 32.64 5.52
633 651 1.302832 CTTTCTCCAAGGCAGCCGT 60.303 57.895 5.55 0.00 0.00 5.68
634 652 1.580845 CTTTCTCCAAGGCAGCCGTG 61.581 60.000 19.81 19.81 32.93 4.94
672 702 2.309764 GAAACGGGCGTGCATAGCAG 62.310 60.000 16.99 12.73 40.08 4.24
700 730 2.614057 GCCATATCTTTGTTCGGAGTGG 59.386 50.000 0.00 0.00 0.00 4.00
770 802 0.516877 CGCTTGCTTGATTCCGTGAA 59.483 50.000 0.00 0.00 0.00 3.18
893 941 5.007626 ACCCAATGATCACGACATTTTATCG 59.992 40.000 0.00 0.00 45.17 2.92
911 959 2.398588 TCGCATCTAATCCCCAGAACT 58.601 47.619 0.00 0.00 0.00 3.01
1210 1302 1.339727 GCTTACCGAACATCACCCCTT 60.340 52.381 0.00 0.00 0.00 3.95
1212 1304 0.906775 TACCGAACATCACCCCTTCC 59.093 55.000 0.00 0.00 0.00 3.46
1227 1319 1.279271 CCTTCCTCCTTTCGTGGTGAT 59.721 52.381 0.00 0.00 0.00 3.06
1289 1388 8.803397 ATTTACTGATCCATCACCATATCATG 57.197 34.615 0.00 0.00 32.50 3.07
1299 1398 1.276421 ACCATATCATGTCTAGGCGGC 59.724 52.381 0.00 0.00 0.00 6.53
1380 1479 4.719616 GCGCTGTTCAACGACGGC 62.720 66.667 0.00 0.00 46.12 5.68
1403 1502 3.121030 GTGCGGGCAGTGCTACAG 61.121 66.667 16.11 5.26 0.00 2.74
1530 1629 2.672996 GACGGTGGCTGGTGCAAT 60.673 61.111 0.00 0.00 41.91 3.56
1626 1725 3.615496 CCGTCGTATACCAAAGGTTTCTG 59.385 47.826 0.00 0.00 37.09 3.02
1631 1730 6.090493 GTCGTATACCAAAGGTTTCTGTCTTC 59.910 42.308 0.00 0.00 37.09 2.87
1680 1779 7.847711 ATATGATCCTTCTGCAAGTAGTAGT 57.152 36.000 0.00 0.00 33.76 2.73
1681 1780 8.941995 ATATGATCCTTCTGCAAGTAGTAGTA 57.058 34.615 0.00 0.00 33.76 1.82
1682 1781 6.701145 TGATCCTTCTGCAAGTAGTAGTAG 57.299 41.667 0.00 0.00 33.76 2.57
1684 1783 7.063593 TGATCCTTCTGCAAGTAGTAGTAGAT 58.936 38.462 0.00 0.00 30.68 1.98
1685 1784 7.561722 TGATCCTTCTGCAAGTAGTAGTAGATT 59.438 37.037 0.00 0.00 30.68 2.40
1687 1786 8.223177 TCCTTCTGCAAGTAGTAGTAGATTAC 57.777 38.462 0.00 0.00 30.68 1.89
1688 1787 7.832685 TCCTTCTGCAAGTAGTAGTAGATTACA 59.167 37.037 0.00 0.00 30.68 2.41
1690 1789 7.028926 TCTGCAAGTAGTAGTAGATTACAGC 57.971 40.000 0.00 0.00 33.76 4.40
1691 1790 6.602009 TCTGCAAGTAGTAGTAGATTACAGCA 59.398 38.462 0.00 0.00 34.60 4.41
1692 1791 7.122204 TCTGCAAGTAGTAGTAGATTACAGCAA 59.878 37.037 0.00 0.00 35.04 3.91
1693 1792 7.033791 TGCAAGTAGTAGTAGATTACAGCAAC 58.966 38.462 0.00 0.00 33.61 4.17
1694 1793 7.093902 TGCAAGTAGTAGTAGATTACAGCAACT 60.094 37.037 0.00 0.00 33.61 3.16
1695 1794 7.221067 GCAAGTAGTAGTAGATTACAGCAACTG 59.779 40.741 0.00 0.00 37.52 3.16
1696 1795 8.459635 CAAGTAGTAGTAGATTACAGCAACTGA 58.540 37.037 0.78 0.00 35.18 3.41
1697 1796 8.754991 AGTAGTAGTAGATTACAGCAACTGAT 57.245 34.615 0.78 0.00 35.18 2.90
1698 1797 8.625651 AGTAGTAGTAGATTACAGCAACTGATG 58.374 37.037 0.78 0.00 35.18 3.07
1699 1798 6.810911 AGTAGTAGATTACAGCAACTGATGG 58.189 40.000 0.78 0.00 35.42 3.51
1700 1799 5.683876 AGTAGATTACAGCAACTGATGGT 57.316 39.130 0.78 0.00 41.41 3.55
1701 1800 5.665459 AGTAGATTACAGCAACTGATGGTC 58.335 41.667 0.78 0.00 37.77 4.02
1702 1801 3.878778 AGATTACAGCAACTGATGGTCC 58.121 45.455 0.78 0.00 37.77 4.46
1703 1802 3.521126 AGATTACAGCAACTGATGGTCCT 59.479 43.478 0.78 0.00 37.77 3.85
1704 1803 2.768253 TACAGCAACTGATGGTCCTG 57.232 50.000 0.78 0.00 37.77 3.86
1705 1804 1.059098 ACAGCAACTGATGGTCCTGA 58.941 50.000 0.78 0.00 37.77 3.86
1788 3912 5.337571 CCATGACTACTTCCAGCTTGTTCTA 60.338 44.000 0.00 0.00 0.00 2.10
1822 3947 1.471501 CGACCATTGGCTCGATCAAGA 60.472 52.381 17.40 0.00 31.51 3.02
1851 3976 1.452108 CAAGGGCTCCGAATCACCC 60.452 63.158 0.00 0.00 43.17 4.61
1908 4033 1.062845 GCACTCTCTCGCGTACCTC 59.937 63.158 5.77 0.00 0.00 3.85
1981 4106 1.000385 CGTTCACAAATGTGGTGCCAT 60.000 47.619 13.22 0.00 45.65 4.40
1998 4123 4.388499 TCCGGCTGGAAGTTCGGC 62.388 66.667 13.31 9.94 46.74 5.54
2117 4242 4.681942 GCTAGCTGTTTCCATATGTACGAG 59.318 45.833 7.70 0.28 0.00 4.18
2136 4261 9.526713 TGTACGAGTATTACAACTTGTTTTACA 57.473 29.630 0.00 0.00 40.52 2.41
2160 4285 7.224753 ACAGTACTTGTATATACATGCAACTGC 59.775 37.037 33.08 19.75 43.30 4.40
2167 4292 8.757164 TGTATATACATGCAACTGCTGTATAC 57.243 34.615 22.29 17.72 42.73 1.47
2168 4293 7.817478 TGTATATACATGCAACTGCTGTATACC 59.183 37.037 22.29 18.48 42.73 2.73
2173 4298 5.104941 ACATGCAACTGCTGTATACCTCTTA 60.105 40.000 2.95 0.00 42.66 2.10
2176 4301 7.303182 TGCAACTGCTGTATACCTCTTATAT 57.697 36.000 2.95 0.00 42.66 0.86
2239 5871 1.495574 ACCTACGGCTATGAGAGACCT 59.504 52.381 0.00 0.00 0.00 3.85
2248 5880 1.288350 ATGAGAGACCTACGTCGTCG 58.712 55.000 0.00 0.00 44.28 5.12
2265 5897 2.045926 GCACGGGAAGGCATCACT 60.046 61.111 0.00 0.00 0.00 3.41
2286 5918 7.761409 TCACTTGATGCCAACTATTAAATGAC 58.239 34.615 0.00 0.00 0.00 3.06
2287 5919 7.611467 TCACTTGATGCCAACTATTAAATGACT 59.389 33.333 0.00 0.00 0.00 3.41
2288 5920 8.892723 CACTTGATGCCAACTATTAAATGACTA 58.107 33.333 0.00 0.00 0.00 2.59
2289 5921 9.113838 ACTTGATGCCAACTATTAAATGACTAG 57.886 33.333 0.00 0.00 0.00 2.57
2290 5922 9.113838 CTTGATGCCAACTATTAAATGACTAGT 57.886 33.333 0.00 0.00 0.00 2.57
2292 5924 9.764363 TGATGCCAACTATTAAATGACTAGTAG 57.236 33.333 0.00 0.00 0.00 2.57
2293 5925 9.765795 GATGCCAACTATTAAATGACTAGTAGT 57.234 33.333 1.37 1.37 0.00 2.73
2294 5926 9.765795 ATGCCAACTATTAAATGACTAGTAGTC 57.234 33.333 21.35 21.35 45.26 2.59
2298 5930 9.250624 CAACTATTAAATGACTAGTAGTCTGCC 57.749 37.037 26.60 5.91 45.27 4.85
2299 5931 7.953752 ACTATTAAATGACTAGTAGTCTGCCC 58.046 38.462 26.60 5.56 45.27 5.36
2300 5932 6.808321 ATTAAATGACTAGTAGTCTGCCCA 57.192 37.500 26.60 10.79 45.27 5.36
2301 5933 6.808321 TTAAATGACTAGTAGTCTGCCCAT 57.192 37.500 26.60 12.44 45.27 4.00
2302 5934 4.679373 AATGACTAGTAGTCTGCCCATG 57.321 45.455 26.60 0.00 45.27 3.66
2303 5935 1.757118 TGACTAGTAGTCTGCCCATGC 59.243 52.381 26.60 2.88 45.27 4.06
2304 5936 1.757118 GACTAGTAGTCTGCCCATGCA 59.243 52.381 20.95 0.00 46.76 3.96
2314 5946 2.385135 TGCCCATGCATTGATATGGT 57.615 45.000 15.16 0.00 44.23 3.55
2315 5947 2.680251 TGCCCATGCATTGATATGGTT 58.320 42.857 15.16 0.00 44.23 3.67
2316 5948 3.842206 TGCCCATGCATTGATATGGTTA 58.158 40.909 15.16 5.32 44.23 2.85
2317 5949 3.573538 TGCCCATGCATTGATATGGTTAC 59.426 43.478 15.16 8.10 44.23 2.50
2318 5950 3.573538 GCCCATGCATTGATATGGTTACA 59.426 43.478 15.16 0.00 41.80 2.41
2319 5951 4.039004 GCCCATGCATTGATATGGTTACAA 59.961 41.667 15.16 0.00 41.80 2.41
2320 5952 5.279607 GCCCATGCATTGATATGGTTACAAT 60.280 40.000 15.16 0.00 41.80 2.71
2336 5968 8.005192 TGGTTACAATGCATATATTTGAAGCA 57.995 30.769 0.00 5.07 39.79 3.91
2337 5969 8.473219 TGGTTACAATGCATATATTTGAAGCAA 58.527 29.630 0.00 0.00 38.85 3.91
2338 5970 9.311916 GGTTACAATGCATATATTTGAAGCAAA 57.688 29.630 0.00 0.00 38.85 3.68
2355 5987 9.606631 TTGAAGCAAATAAATGGTTAAAGTTGT 57.393 25.926 0.00 0.00 40.82 3.32
2356 5988 9.255304 TGAAGCAAATAAATGGTTAAAGTTGTC 57.745 29.630 0.00 0.00 40.82 3.18
2357 5989 9.476202 GAAGCAAATAAATGGTTAAAGTTGTCT 57.524 29.630 0.00 0.00 40.82 3.41
2358 5990 9.830975 AAGCAAATAAATGGTTAAAGTTGTCTT 57.169 25.926 0.00 0.00 39.11 3.01
2359 5991 9.476202 AGCAAATAAATGGTTAAAGTTGTCTTC 57.524 29.630 0.00 0.00 32.90 2.87
2360 5992 9.255304 GCAAATAAATGGTTAAAGTTGTCTTCA 57.745 29.630 0.00 0.00 32.90 3.02
2365 5997 8.926715 AAATGGTTAAAGTTGTCTTCAAAGTC 57.073 30.769 0.00 0.00 35.20 3.01
2366 5998 6.114221 TGGTTAAAGTTGTCTTCAAAGTCG 57.886 37.500 0.00 0.00 35.20 4.18
2367 5999 5.875910 TGGTTAAAGTTGTCTTCAAAGTCGA 59.124 36.000 0.00 0.00 35.20 4.20
2368 6000 6.372103 TGGTTAAAGTTGTCTTCAAAGTCGAA 59.628 34.615 0.00 0.00 35.20 3.71
2369 6001 7.094720 TGGTTAAAGTTGTCTTCAAAGTCGAAA 60.095 33.333 0.00 0.00 35.20 3.46
2370 6002 7.913821 GGTTAAAGTTGTCTTCAAAGTCGAAAT 59.086 33.333 0.00 0.00 35.20 2.17
2371 6003 9.285770 GTTAAAGTTGTCTTCAAAGTCGAAATT 57.714 29.630 0.00 0.00 35.20 1.82
2372 6004 9.849166 TTAAAGTTGTCTTCAAAGTCGAAATTT 57.151 25.926 0.00 0.00 35.20 1.82
2379 6011 9.878599 TGTCTTCAAAGTCGAAATTTATTTCTC 57.121 29.630 12.05 6.46 42.96 2.87
2380 6012 9.331106 GTCTTCAAAGTCGAAATTTATTTCTCC 57.669 33.333 12.05 4.12 42.96 3.71
2381 6013 8.512138 TCTTCAAAGTCGAAATTTATTTCTCCC 58.488 33.333 12.05 2.17 42.96 4.30
2382 6014 7.996098 TCAAAGTCGAAATTTATTTCTCCCT 57.004 32.000 12.05 3.98 42.96 4.20
2383 6015 8.404107 TCAAAGTCGAAATTTATTTCTCCCTT 57.596 30.769 12.05 8.46 42.96 3.95
2384 6016 9.509956 TCAAAGTCGAAATTTATTTCTCCCTTA 57.490 29.630 12.05 0.00 42.96 2.69
2387 6019 8.451908 AGTCGAAATTTATTTCTCCCTTATGG 57.548 34.615 12.05 0.00 42.96 2.74
2388 6020 8.053355 AGTCGAAATTTATTTCTCCCTTATGGT 58.947 33.333 12.05 0.00 42.96 3.55
2389 6021 8.683615 GTCGAAATTTATTTCTCCCTTATGGTT 58.316 33.333 12.05 0.00 42.96 3.67
2390 6022 9.250246 TCGAAATTTATTTCTCCCTTATGGTTT 57.750 29.630 12.05 0.00 42.96 3.27
2391 6023 9.301153 CGAAATTTATTTCTCCCTTATGGTTTG 57.699 33.333 12.05 0.00 42.96 2.93
2396 6028 8.817092 TTATTTCTCCCTTATGGTTTGTTAGG 57.183 34.615 0.00 0.00 34.77 2.69
2397 6029 6.457159 TTTCTCCCTTATGGTTTGTTAGGA 57.543 37.500 0.00 0.00 34.77 2.94
2398 6030 5.431179 TCTCCCTTATGGTTTGTTAGGAC 57.569 43.478 0.00 0.00 34.77 3.85
2399 6031 4.847512 TCTCCCTTATGGTTTGTTAGGACA 59.152 41.667 0.00 0.00 34.77 4.02
2400 6032 5.491078 TCTCCCTTATGGTTTGTTAGGACAT 59.509 40.000 0.00 0.00 33.44 3.06
2401 6033 6.674861 TCTCCCTTATGGTTTGTTAGGACATA 59.325 38.462 0.00 0.00 33.44 2.29
2402 6034 7.183112 TCTCCCTTATGGTTTGTTAGGACATAA 59.817 37.037 0.00 0.00 33.44 1.90
2403 6035 7.700846 TCCCTTATGGTTTGTTAGGACATAAA 58.299 34.615 0.00 0.00 34.67 1.40
2404 6036 7.832187 TCCCTTATGGTTTGTTAGGACATAAAG 59.168 37.037 0.00 0.00 34.67 1.85
2405 6037 7.416326 CCCTTATGGTTTGTTAGGACATAAAGC 60.416 40.741 0.00 0.00 34.67 3.51
2406 6038 5.560966 ATGGTTTGTTAGGACATAAAGCG 57.439 39.130 0.00 0.00 35.29 4.68
2407 6039 3.754323 TGGTTTGTTAGGACATAAAGCGG 59.246 43.478 0.00 0.00 35.29 5.52
2408 6040 3.128068 GGTTTGTTAGGACATAAAGCGGG 59.872 47.826 0.00 0.00 35.29 6.13
2409 6041 3.706600 TTGTTAGGACATAAAGCGGGT 57.293 42.857 0.00 0.00 35.29 5.28
2410 6042 2.980568 TGTTAGGACATAAAGCGGGTG 58.019 47.619 0.00 0.00 0.00 4.61
2411 6043 2.303600 TGTTAGGACATAAAGCGGGTGT 59.696 45.455 0.00 0.00 0.00 4.16
2412 6044 2.934553 GTTAGGACATAAAGCGGGTGTC 59.065 50.000 6.16 6.16 41.07 3.67
2414 6046 3.543884 GACATAAAGCGGGTGTCCA 57.456 52.632 0.00 0.00 37.00 4.02
2415 6047 1.369625 GACATAAAGCGGGTGTCCAG 58.630 55.000 0.00 0.00 37.00 3.86
2416 6048 0.676782 ACATAAAGCGGGTGTCCAGC 60.677 55.000 2.91 2.91 34.41 4.85
2417 6049 1.449601 ATAAAGCGGGTGTCCAGCG 60.450 57.895 5.41 0.00 37.54 5.18
2418 6050 2.869503 ATAAAGCGGGTGTCCAGCGG 62.870 60.000 5.41 0.29 37.54 5.52
2427 6059 4.344865 GTCCAGCGGGCTCCCAAA 62.345 66.667 5.70 0.00 35.37 3.28
2428 6060 3.575247 TCCAGCGGGCTCCCAAAA 61.575 61.111 5.70 0.00 35.37 2.44
2429 6061 2.362889 CCAGCGGGCTCCCAAAAT 60.363 61.111 5.70 0.00 35.37 1.82
2430 6062 2.418083 CCAGCGGGCTCCCAAAATC 61.418 63.158 5.70 0.00 35.37 2.17
2431 6063 2.043953 AGCGGGCTCCCAAAATCC 60.044 61.111 5.70 0.00 35.37 3.01
2432 6064 2.362375 GCGGGCTCCCAAAATCCA 60.362 61.111 5.70 0.00 35.37 3.41
2433 6065 1.981853 GCGGGCTCCCAAAATCCAA 60.982 57.895 5.70 0.00 35.37 3.53
2434 6066 1.890174 CGGGCTCCCAAAATCCAAC 59.110 57.895 5.70 0.00 35.37 3.77
2435 6067 0.611896 CGGGCTCCCAAAATCCAACT 60.612 55.000 5.70 0.00 35.37 3.16
2436 6068 0.897621 GGGCTCCCAAAATCCAACTG 59.102 55.000 0.00 0.00 35.81 3.16
2437 6069 1.632589 GGCTCCCAAAATCCAACTGT 58.367 50.000 0.00 0.00 0.00 3.55
2438 6070 1.546029 GGCTCCCAAAATCCAACTGTC 59.454 52.381 0.00 0.00 0.00 3.51
2439 6071 2.519013 GCTCCCAAAATCCAACTGTCT 58.481 47.619 0.00 0.00 0.00 3.41
2440 6072 3.561313 GGCTCCCAAAATCCAACTGTCTA 60.561 47.826 0.00 0.00 0.00 2.59
2441 6073 3.691609 GCTCCCAAAATCCAACTGTCTAG 59.308 47.826 0.00 0.00 0.00 2.43
2442 6074 4.565652 GCTCCCAAAATCCAACTGTCTAGA 60.566 45.833 0.00 0.00 0.00 2.43
2443 6075 5.749462 CTCCCAAAATCCAACTGTCTAGAT 58.251 41.667 0.00 0.00 0.00 1.98
2444 6076 6.632672 GCTCCCAAAATCCAACTGTCTAGATA 60.633 42.308 0.00 0.00 0.00 1.98
2445 6077 6.889198 TCCCAAAATCCAACTGTCTAGATAG 58.111 40.000 14.43 14.43 0.00 2.08
2446 6078 6.443849 TCCCAAAATCCAACTGTCTAGATAGT 59.556 38.462 15.78 15.78 34.07 2.12
2447 6079 6.763610 CCCAAAATCCAACTGTCTAGATAGTC 59.236 42.308 20.92 0.00 31.29 2.59
2448 6080 6.763610 CCAAAATCCAACTGTCTAGATAGTCC 59.236 42.308 20.92 0.00 31.29 3.85
2449 6081 5.776173 AATCCAACTGTCTAGATAGTCCG 57.224 43.478 20.92 15.00 31.29 4.79
2450 6082 3.552875 TCCAACTGTCTAGATAGTCCGG 58.447 50.000 20.92 21.76 31.29 5.14
2451 6083 3.201487 TCCAACTGTCTAGATAGTCCGGA 59.799 47.826 24.96 24.96 34.20 5.14
2452 6084 3.315749 CCAACTGTCTAGATAGTCCGGAC 59.684 52.174 27.67 27.67 31.29 4.79
2453 6085 4.200874 CAACTGTCTAGATAGTCCGGACT 58.799 47.826 37.59 37.59 45.02 3.85
2454 6086 4.506937 ACTGTCTAGATAGTCCGGACTT 57.493 45.455 40.23 26.98 42.54 3.01
2455 6087 4.453751 ACTGTCTAGATAGTCCGGACTTC 58.546 47.826 40.23 31.85 42.54 3.01
2456 6088 3.816523 CTGTCTAGATAGTCCGGACTTCC 59.183 52.174 40.23 29.52 42.54 3.46
2457 6089 3.148412 GTCTAGATAGTCCGGACTTCCC 58.852 54.545 40.23 27.21 42.54 3.97
2458 6090 2.781757 TCTAGATAGTCCGGACTTCCCA 59.218 50.000 40.23 24.06 42.54 4.37
2459 6091 2.544844 AGATAGTCCGGACTTCCCAA 57.455 50.000 40.23 23.66 42.54 4.12
2460 6092 2.829023 AGATAGTCCGGACTTCCCAAA 58.171 47.619 40.23 22.89 42.54 3.28
2461 6093 3.178865 AGATAGTCCGGACTTCCCAAAA 58.821 45.455 40.23 22.13 42.54 2.44
2462 6094 3.780850 AGATAGTCCGGACTTCCCAAAAT 59.219 43.478 40.23 25.74 42.54 1.82
2463 6095 2.491675 AGTCCGGACTTCCCAAAATC 57.508 50.000 31.69 1.19 38.83 2.17
2464 6096 1.985895 AGTCCGGACTTCCCAAAATCT 59.014 47.619 31.69 4.89 38.83 2.40
2465 6097 3.178865 AGTCCGGACTTCCCAAAATCTA 58.821 45.455 31.69 0.00 38.83 1.98
2466 6098 3.197983 AGTCCGGACTTCCCAAAATCTAG 59.802 47.826 31.69 0.00 38.83 2.43
2467 6099 2.504175 TCCGGACTTCCCAAAATCTAGG 59.496 50.000 0.00 0.00 34.14 3.02
2468 6100 2.289565 CGGACTTCCCAAAATCTAGGC 58.710 52.381 0.00 0.00 34.14 3.93
2469 6101 2.656002 GGACTTCCCAAAATCTAGGCC 58.344 52.381 0.00 0.00 34.14 5.19
2470 6102 2.025321 GGACTTCCCAAAATCTAGGCCA 60.025 50.000 5.01 0.00 34.02 5.36
2471 6103 3.373110 GGACTTCCCAAAATCTAGGCCAT 60.373 47.826 5.01 0.00 34.02 4.40
2472 6104 3.885901 GACTTCCCAAAATCTAGGCCATC 59.114 47.826 5.01 0.00 0.00 3.51
2473 6105 3.529319 ACTTCCCAAAATCTAGGCCATCT 59.471 43.478 5.01 0.00 0.00 2.90
2474 6106 3.582998 TCCCAAAATCTAGGCCATCTG 57.417 47.619 5.01 0.00 0.00 2.90
2475 6107 2.852449 TCCCAAAATCTAGGCCATCTGT 59.148 45.455 5.01 0.00 0.00 3.41
2476 6108 2.954318 CCCAAAATCTAGGCCATCTGTG 59.046 50.000 5.01 0.00 0.00 3.66
2490 6122 3.424703 CATCTGTGGAGGAAAATGTGGT 58.575 45.455 0.00 0.00 0.00 4.16
2491 6123 3.140325 TCTGTGGAGGAAAATGTGGTC 57.860 47.619 0.00 0.00 0.00 4.02
2492 6124 2.441375 TCTGTGGAGGAAAATGTGGTCA 59.559 45.455 0.00 0.00 0.00 4.02
2493 6125 3.074390 TCTGTGGAGGAAAATGTGGTCAT 59.926 43.478 0.00 0.00 35.59 3.06
2494 6126 3.420893 TGTGGAGGAAAATGTGGTCATC 58.579 45.455 0.00 0.00 32.56 2.92
2495 6127 3.074390 TGTGGAGGAAAATGTGGTCATCT 59.926 43.478 0.00 0.00 32.56 2.90
2496 6128 3.441572 GTGGAGGAAAATGTGGTCATCTG 59.558 47.826 0.00 0.00 32.56 2.90
2497 6129 3.019564 GGAGGAAAATGTGGTCATCTGG 58.980 50.000 0.00 0.00 32.56 3.86
2498 6130 3.308402 GGAGGAAAATGTGGTCATCTGGA 60.308 47.826 0.00 0.00 32.56 3.86
2499 6131 3.690460 AGGAAAATGTGGTCATCTGGAC 58.310 45.455 0.00 0.00 46.20 4.02
2500 6132 3.331889 AGGAAAATGTGGTCATCTGGACT 59.668 43.478 0.00 0.00 46.16 3.85
2501 6133 4.536090 AGGAAAATGTGGTCATCTGGACTA 59.464 41.667 0.00 0.00 46.16 2.59
2502 6134 5.192522 AGGAAAATGTGGTCATCTGGACTAT 59.807 40.000 0.00 0.00 46.16 2.12
2503 6135 5.529060 GGAAAATGTGGTCATCTGGACTATC 59.471 44.000 0.00 0.00 46.16 2.08
2504 6136 4.696479 AATGTGGTCATCTGGACTATCC 57.304 45.455 0.00 0.00 46.16 2.59
2505 6137 2.031870 TGTGGTCATCTGGACTATCCG 58.968 52.381 0.00 0.00 46.16 4.18
2506 6138 1.040646 TGGTCATCTGGACTATCCGC 58.959 55.000 0.00 0.00 46.16 5.54
2507 6139 0.318762 GGTCATCTGGACTATCCGCC 59.681 60.000 0.00 0.00 46.16 6.13
2508 6140 0.039074 GTCATCTGGACTATCCGCCG 60.039 60.000 0.00 0.00 43.46 6.46
2509 6141 0.467474 TCATCTGGACTATCCGCCGT 60.467 55.000 0.00 0.00 40.17 5.68
2510 6142 0.319040 CATCTGGACTATCCGCCGTG 60.319 60.000 0.00 0.00 40.17 4.94
2511 6143 2.088674 ATCTGGACTATCCGCCGTGC 62.089 60.000 0.00 0.00 40.17 5.34
2512 6144 2.758327 TGGACTATCCGCCGTGCT 60.758 61.111 0.00 0.00 40.17 4.40
2513 6145 1.452953 CTGGACTATCCGCCGTGCTA 61.453 60.000 0.00 0.00 40.17 3.49
2514 6146 0.826256 TGGACTATCCGCCGTGCTAT 60.826 55.000 0.00 0.00 40.17 2.97
2515 6147 1.171308 GGACTATCCGCCGTGCTATA 58.829 55.000 0.00 0.00 0.00 1.31
2516 6148 1.749634 GGACTATCCGCCGTGCTATAT 59.250 52.381 0.00 0.00 0.00 0.86
2517 6149 2.223525 GGACTATCCGCCGTGCTATATC 60.224 54.545 0.00 0.00 0.00 1.63
2518 6150 2.683867 GACTATCCGCCGTGCTATATCT 59.316 50.000 0.00 0.00 0.00 1.98
2529 6161 6.129168 CGCCGTGCTATATCTAACTACAAAAG 60.129 42.308 0.00 0.00 0.00 2.27
2547 6179 1.805945 GTACGAGCTCAGTTGCGGG 60.806 63.158 15.40 0.00 38.13 6.13
2559 6191 3.524648 TTGCGGGTCAAGGGTCGAC 62.525 63.158 7.13 7.13 0.00 4.20
2568 6200 1.302033 AAGGGTCGACTTGCAGCTG 60.302 57.895 16.46 10.11 0.00 4.24
2574 6206 1.376424 CGACTTGCAGCTGGGATGT 60.376 57.895 17.12 5.93 0.00 3.06
2578 6210 1.561076 ACTTGCAGCTGGGATGTGATA 59.439 47.619 17.12 0.00 0.00 2.15
2631 6263 1.386533 CAATGATGGAGGTGGTGAGC 58.613 55.000 0.00 0.00 0.00 4.26
2633 6265 0.254178 ATGATGGAGGTGGTGAGCAC 59.746 55.000 6.17 6.17 0.00 4.40
2659 6291 2.496070 TGTCGAACCCACAAGGATCTAG 59.504 50.000 0.00 0.00 39.89 2.43
2681 6313 6.112927 AGAGGCAAGATCAATATTCTCTCC 57.887 41.667 0.00 0.00 0.00 3.71
2690 6322 7.644062 AGATCAATATTCTCTCCGGTCCTATA 58.356 38.462 0.00 0.00 0.00 1.31
2714 6346 4.658435 TGCCACTGATACAACCCTATGTAT 59.342 41.667 0.00 0.00 46.47 2.29
2723 6355 2.283145 ACCCTATGTATACCGAGCGT 57.717 50.000 0.00 0.00 0.00 5.07
2724 6356 2.590821 ACCCTATGTATACCGAGCGTT 58.409 47.619 0.00 0.00 0.00 4.84
2761 6393 9.893305 AGAAACAAGAAATAAAACTATGTTCCG 57.107 29.630 0.00 0.00 0.00 4.30
2772 6404 4.706842 ACTATGTTCCGGGCATAAAGAT 57.293 40.909 16.50 4.85 0.00 2.40
2795 6427 8.350722 AGATGTAGCTTTGCAAGATAATGAATG 58.649 33.333 0.00 0.00 30.16 2.67
2819 6451 9.816354 ATGACATAAACATAAATTTTAGGTGCC 57.184 29.630 7.18 0.00 34.49 5.01
2865 6497 4.521130 ACGCATATCGAGTGTGGAATAT 57.479 40.909 15.75 0.00 41.67 1.28
2868 6500 4.923281 CGCATATCGAGTGTGGAATATTGA 59.077 41.667 0.00 0.00 41.67 2.57
2906 6538 3.634397 TTGTCCCTAGGAAATCAGCTG 57.366 47.619 11.48 7.63 31.38 4.24
2907 6539 2.551270 TGTCCCTAGGAAATCAGCTGT 58.449 47.619 14.67 0.00 31.38 4.40
2944 6576 7.536281 CGATCATCATTGCAAGTTTATATGTGG 59.464 37.037 4.94 0.00 0.00 4.17
2952 6584 4.687219 GCAAGTTTATATGTGGGAGAGGCT 60.687 45.833 0.00 0.00 0.00 4.58
2960 6592 0.463620 GTGGGAGAGGCTTCTGCTAG 59.536 60.000 16.75 0.00 41.18 3.42
2984 6616 5.627503 GCATGCCATCCCTTACTTGAAATTT 60.628 40.000 6.36 0.00 0.00 1.82
2988 6620 7.555087 TGCCATCCCTTACTTGAAATTTTATG 58.445 34.615 0.00 0.00 0.00 1.90
2991 6623 7.492344 CCATCCCTTACTTGAAATTTTATGCAC 59.508 37.037 0.00 0.00 0.00 4.57
3001 6633 9.844790 CTTGAAATTTTATGCACTTATGACTGA 57.155 29.630 0.00 0.00 0.00 3.41
3020 6652 4.572389 ACTGAAACTATTAGCAAGCATCCG 59.428 41.667 0.00 0.00 0.00 4.18
3023 6655 2.487934 ACTATTAGCAAGCATCCGCAG 58.512 47.619 0.00 0.00 42.27 5.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.288579 CCCCGCTTTTACCAAAAGGTTC 60.289 50.000 12.06 0.00 46.17 3.62
2 3 1.689813 CCCCGCTTTTACCAAAAGGTT 59.310 47.619 12.06 0.00 46.17 3.50
4 5 0.037697 GCCCCGCTTTTACCAAAAGG 60.038 55.000 12.06 4.10 46.17 3.11
7 8 4.934316 AGCCCCGCTTTTACCAAA 57.066 50.000 0.00 0.00 33.89 3.28
16 17 1.150536 TCTTTGTTCAAGCCCCGCT 59.849 52.632 0.00 0.00 42.56 5.52
17 18 1.285950 GTCTTTGTTCAAGCCCCGC 59.714 57.895 0.00 0.00 31.70 6.13
30 31 1.003928 ACGGGCCTAATTTCGGTCTTT 59.996 47.619 0.84 0.00 0.00 2.52
37 38 3.246936 CGCTTTACTACGGGCCTAATTTC 59.753 47.826 0.84 0.00 0.00 2.17
40 41 1.069668 CCGCTTTACTACGGGCCTAAT 59.930 52.381 0.84 0.00 45.74 1.73
42 43 2.118132 CCGCTTTACTACGGGCCTA 58.882 57.895 0.84 0.00 45.74 3.93
43 44 2.897972 CCGCTTTACTACGGGCCT 59.102 61.111 0.84 0.00 45.74 5.19
59 60 5.679601 AGAGTTTCTCTTAGATGCAATCCC 58.320 41.667 0.00 0.00 40.34 3.85
60 61 7.496747 ACTAGAGTTTCTCTTAGATGCAATCC 58.503 38.462 4.60 0.00 42.20 3.01
102 103 3.111853 TCATAAGCCTTATGCCGACTG 57.888 47.619 17.80 0.00 42.12 3.51
103 104 3.134804 ACTTCATAAGCCTTATGCCGACT 59.865 43.478 17.80 0.00 42.12 4.18
104 105 3.467803 ACTTCATAAGCCTTATGCCGAC 58.532 45.455 17.80 0.00 42.12 4.79
105 106 3.388024 AGACTTCATAAGCCTTATGCCGA 59.612 43.478 17.80 7.07 42.12 5.54
106 107 3.496130 CAGACTTCATAAGCCTTATGCCG 59.504 47.826 17.80 13.25 42.12 5.69
107 108 4.455606 ACAGACTTCATAAGCCTTATGCC 58.544 43.478 17.80 8.20 42.12 4.40
108 109 4.210120 CGACAGACTTCATAAGCCTTATGC 59.790 45.833 17.80 5.79 42.12 3.14
109 110 5.592054 TCGACAGACTTCATAAGCCTTATG 58.408 41.667 16.73 16.73 43.41 1.90
110 111 5.221342 CCTCGACAGACTTCATAAGCCTTAT 60.221 44.000 0.00 0.00 0.00 1.73
111 112 4.098044 CCTCGACAGACTTCATAAGCCTTA 59.902 45.833 0.00 0.00 0.00 2.69
112 113 3.118956 CCTCGACAGACTTCATAAGCCTT 60.119 47.826 0.00 0.00 0.00 4.35
113 114 2.428890 CCTCGACAGACTTCATAAGCCT 59.571 50.000 0.00 0.00 0.00 4.58
114 115 2.166664 ACCTCGACAGACTTCATAAGCC 59.833 50.000 0.00 0.00 0.00 4.35
115 116 3.119459 TCACCTCGACAGACTTCATAAGC 60.119 47.826 0.00 0.00 0.00 3.09
116 117 4.703645 TCACCTCGACAGACTTCATAAG 57.296 45.455 0.00 0.00 0.00 1.73
117 118 4.678044 GCATCACCTCGACAGACTTCATAA 60.678 45.833 0.00 0.00 0.00 1.90
118 119 3.181486 GCATCACCTCGACAGACTTCATA 60.181 47.826 0.00 0.00 0.00 2.15
119 120 2.417924 GCATCACCTCGACAGACTTCAT 60.418 50.000 0.00 0.00 0.00 2.57
120 121 1.067565 GCATCACCTCGACAGACTTCA 60.068 52.381 0.00 0.00 0.00 3.02
121 122 1.067565 TGCATCACCTCGACAGACTTC 60.068 52.381 0.00 0.00 0.00 3.01
122 123 0.969149 TGCATCACCTCGACAGACTT 59.031 50.000 0.00 0.00 0.00 3.01
123 124 0.244994 GTGCATCACCTCGACAGACT 59.755 55.000 0.00 0.00 0.00 3.24
124 125 0.038251 TGTGCATCACCTCGACAGAC 60.038 55.000 0.00 0.00 32.73 3.51
125 126 0.678950 TTGTGCATCACCTCGACAGA 59.321 50.000 0.00 0.00 32.73 3.41
129 130 1.069978 TGAGTTTGTGCATCACCTCGA 59.930 47.619 0.00 0.00 32.73 4.04
141 142 6.212388 AGTCAATATGGAGACTCTGAGTTTGT 59.788 38.462 12.27 0.00 40.96 2.83
143 144 6.638610 CAGTCAATATGGAGACTCTGAGTTT 58.361 40.000 12.27 6.11 42.87 2.66
156 157 7.085052 CATGATATGGAAGCAGTCAATATGG 57.915 40.000 2.79 0.00 33.56 2.74
173 174 3.122480 TGACAAGTGGGTCCCATGATAT 58.878 45.455 15.49 0.00 35.28 1.63
210 211 6.353951 GGGAATGGAAGGGAGATTTAGAAGAA 60.354 42.308 0.00 0.00 0.00 2.52
212 213 5.103940 TGGGAATGGAAGGGAGATTTAGAAG 60.104 44.000 0.00 0.00 0.00 2.85
252 253 1.852280 GGCGCAAAGAAAACTTCACAC 59.148 47.619 10.83 0.00 0.00 3.82
253 254 1.474478 TGGCGCAAAGAAAACTTCACA 59.526 42.857 10.83 0.00 0.00 3.58
254 255 2.202295 TGGCGCAAAGAAAACTTCAC 57.798 45.000 10.83 0.00 0.00 3.18
264 265 1.192980 GCTCAAATGTTTGGCGCAAAG 59.807 47.619 10.83 0.00 38.66 2.77
265 266 1.202510 AGCTCAAATGTTTGGCGCAAA 60.203 42.857 10.83 0.00 38.50 3.68
268 269 1.468520 TCTAGCTCAAATGTTTGGCGC 59.531 47.619 0.00 0.00 38.50 6.53
276 277 6.132791 AGTGCATTTCATCTAGCTCAAATG 57.867 37.500 0.00 0.00 38.65 2.32
289 290 3.992643 CAACAATTGGGAGTGCATTTCA 58.007 40.909 10.83 0.00 0.00 2.69
337 338 3.812167 GCATCCTCCAAGTTTGACCTCTT 60.812 47.826 0.00 0.00 0.00 2.85
346 347 3.756082 TTTATGGGCATCCTCCAAGTT 57.244 42.857 0.00 0.00 37.87 2.66
348 349 6.276832 CATAATTTATGGGCATCCTCCAAG 57.723 41.667 8.30 0.00 37.87 3.61
361 362 8.999431 ACCTACTTGTATTCGCCATAATTTATG 58.001 33.333 9.09 9.09 35.94 1.90
378 379 4.013728 CTCTAGCAGAGTCACCTACTTGT 58.986 47.826 0.00 0.00 39.07 3.16
379 380 4.630894 CTCTAGCAGAGTCACCTACTTG 57.369 50.000 0.00 0.00 39.07 3.16
403 405 1.533625 TGGCGATTCTGACCAAAAGG 58.466 50.000 0.00 0.00 0.00 3.11
419 421 2.159338 CCACAATAACTGTCAGCATGGC 60.159 50.000 0.00 0.00 44.49 4.40
420 422 3.084039 ACCACAATAACTGTCAGCATGG 58.916 45.455 0.00 1.87 35.47 3.66
425 427 3.748048 CCAGTCACCACAATAACTGTCAG 59.252 47.826 0.00 0.00 37.92 3.51
444 446 0.103208 GGAGTCGTCATACTGCCCAG 59.897 60.000 0.00 0.00 32.12 4.45
462 464 0.245539 TTTCGGAGCAACTCTACCGG 59.754 55.000 0.00 0.00 44.57 5.28
465 467 4.451096 TCAATTGTTTCGGAGCAACTCTAC 59.549 41.667 5.13 0.00 0.00 2.59
518 520 2.675772 AGGTCGGACGTGGACTCC 60.676 66.667 14.04 0.00 34.82 3.85
536 538 9.433317 CACGTTTATTACACCTTTATTATGCAG 57.567 33.333 0.00 0.00 0.00 4.41
547 549 4.131596 AGCAACACACGTTTATTACACCT 58.868 39.130 0.00 0.00 31.13 4.00
548 550 4.024725 TGAGCAACACACGTTTATTACACC 60.025 41.667 0.00 0.00 31.13 4.16
571 574 4.705482 AAAAACACAGGGCTGCCT 57.295 50.000 19.68 1.35 0.00 4.75
590 608 8.927411 AGAGGAAAATTCATTCTTTTTCAGGAA 58.073 29.630 9.53 0.00 41.45 3.36
592 610 9.551734 AAAGAGGAAAATTCATTCTTTTTCAGG 57.448 29.630 14.18 0.00 41.45 3.86
600 618 7.178097 CCTTGGAGAAAGAGGAAAATTCATTCT 59.822 37.037 0.00 0.00 38.24 2.40
601 619 7.318893 CCTTGGAGAAAGAGGAAAATTCATTC 58.681 38.462 0.00 0.00 38.24 2.67
604 622 4.524328 GCCTTGGAGAAAGAGGAAAATTCA 59.476 41.667 0.00 0.00 38.24 2.57
606 624 4.482990 TGCCTTGGAGAAAGAGGAAAATT 58.517 39.130 0.00 0.00 38.24 1.82
607 625 4.085009 CTGCCTTGGAGAAAGAGGAAAAT 58.915 43.478 0.00 0.00 38.24 1.82
608 626 3.490348 CTGCCTTGGAGAAAGAGGAAAA 58.510 45.455 0.00 0.00 38.24 2.29
610 628 1.271597 GCTGCCTTGGAGAAAGAGGAA 60.272 52.381 0.00 0.00 38.24 3.36
611 629 0.326264 GCTGCCTTGGAGAAAGAGGA 59.674 55.000 0.00 0.00 38.24 3.71
614 632 1.003355 CGGCTGCCTTGGAGAAAGA 60.003 57.895 17.92 0.00 38.24 2.52
615 633 1.302832 ACGGCTGCCTTGGAGAAAG 60.303 57.895 17.92 0.00 35.47 2.62
616 634 1.600636 CACGGCTGCCTTGGAGAAA 60.601 57.895 17.92 0.00 0.00 2.52
617 635 2.032528 CACGGCTGCCTTGGAGAA 59.967 61.111 17.92 0.00 0.00 2.87
618 636 4.020617 CCACGGCTGCCTTGGAGA 62.021 66.667 33.94 0.00 44.56 3.71
622 640 2.912025 AAACCCACGGCTGCCTTG 60.912 61.111 17.52 17.52 0.00 3.61
623 641 2.597510 GAAACCCACGGCTGCCTT 60.598 61.111 17.92 4.00 0.00 4.35
624 642 1.774894 TAAGAAACCCACGGCTGCCT 61.775 55.000 17.92 0.55 0.00 4.75
625 643 0.891904 TTAAGAAACCCACGGCTGCC 60.892 55.000 9.11 9.11 0.00 4.85
626 644 0.955905 TTTAAGAAACCCACGGCTGC 59.044 50.000 0.00 0.00 0.00 5.25
628 646 2.943036 TCTTTAAGAAACCCACGGCT 57.057 45.000 0.00 0.00 0.00 5.52
629 647 3.994204 TTTCTTTAAGAAACCCACGGC 57.006 42.857 15.24 0.00 39.13 5.68
632 650 5.503662 TCCGTTTTCTTTAAGAAACCCAC 57.496 39.130 18.37 13.37 43.25 4.61
633 651 6.331845 GTTTCCGTTTTCTTTAAGAAACCCA 58.668 36.000 18.37 3.22 43.25 4.51
634 652 5.456497 CGTTTCCGTTTTCTTTAAGAAACCC 59.544 40.000 18.37 11.59 43.25 4.11
664 694 4.247612 GGCTGCGCACTGCTATGC 62.248 66.667 19.48 13.52 46.63 3.14
672 702 0.734889 ACAAAGATATGGCTGCGCAC 59.265 50.000 5.66 3.30 0.00 5.34
686 716 0.040067 GCTTGCCACTCCGAACAAAG 60.040 55.000 0.00 0.00 0.00 2.77
770 802 7.988599 TGGCTATAAATTAGTAACCACGTGAAT 59.011 33.333 19.30 7.75 0.00 2.57
782 814 8.052748 TCTGTGATTTGGTGGCTATAAATTAGT 58.947 33.333 0.00 0.00 0.00 2.24
791 823 4.458989 GTGATTTCTGTGATTTGGTGGCTA 59.541 41.667 0.00 0.00 0.00 3.93
792 824 3.256631 GTGATTTCTGTGATTTGGTGGCT 59.743 43.478 0.00 0.00 0.00 4.75
893 941 5.163301 TGAGTTAGTTCTGGGGATTAGATGC 60.163 44.000 0.00 0.00 0.00 3.91
911 959 3.142951 CCGTGTTGTTGGGATTGAGTTA 58.857 45.455 0.00 0.00 0.00 2.24
1210 1302 1.610624 GCAATCACCACGAAAGGAGGA 60.611 52.381 0.00 0.00 34.87 3.71
1212 1304 1.813513 AGCAATCACCACGAAAGGAG 58.186 50.000 0.00 0.00 0.00 3.69
1467 1566 1.302192 GCAGAAGTTGGTGGCCGTA 60.302 57.895 0.00 0.00 0.00 4.02
1626 1725 7.771183 AGTTCAGATGAGAGTAGATTGAAGAC 58.229 38.462 0.00 0.00 0.00 3.01
1655 1754 8.941995 ACTACTACTTGCAGAAGGATCATATA 57.058 34.615 0.00 0.00 32.95 0.86
1658 1757 7.063593 TCTACTACTACTTGCAGAAGGATCAT 58.936 38.462 0.00 0.00 32.95 2.45
1659 1758 6.424032 TCTACTACTACTTGCAGAAGGATCA 58.576 40.000 0.00 0.00 32.95 2.92
1664 1763 7.646130 GCTGTAATCTACTACTACTTGCAGAAG 59.354 40.741 0.00 0.00 33.18 2.85
1675 1774 6.381420 ACCATCAGTTGCTGTAATCTACTACT 59.619 38.462 0.00 0.00 32.61 2.57
1678 1777 5.395768 GGACCATCAGTTGCTGTAATCTACT 60.396 44.000 0.00 0.00 32.61 2.57
1679 1778 4.811557 GGACCATCAGTTGCTGTAATCTAC 59.188 45.833 0.00 0.00 32.61 2.59
1680 1779 4.716784 AGGACCATCAGTTGCTGTAATCTA 59.283 41.667 0.00 0.00 32.61 1.98
1681 1780 3.521126 AGGACCATCAGTTGCTGTAATCT 59.479 43.478 0.00 0.00 32.61 2.40
1682 1781 3.624861 CAGGACCATCAGTTGCTGTAATC 59.375 47.826 0.00 0.00 32.61 1.75
1684 1783 2.637382 TCAGGACCATCAGTTGCTGTAA 59.363 45.455 0.00 0.00 32.61 2.41
1685 1784 2.028112 GTCAGGACCATCAGTTGCTGTA 60.028 50.000 0.00 0.00 32.61 2.74
1687 1786 1.002888 AGTCAGGACCATCAGTTGCTG 59.997 52.381 0.00 0.00 0.00 4.41
1688 1787 1.277557 GAGTCAGGACCATCAGTTGCT 59.722 52.381 0.00 0.00 0.00 3.91
1690 1789 1.905215 AGGAGTCAGGACCATCAGTTG 59.095 52.381 0.00 0.00 0.00 3.16
1691 1790 1.905215 CAGGAGTCAGGACCATCAGTT 59.095 52.381 0.00 0.00 0.00 3.16
1692 1791 1.077828 TCAGGAGTCAGGACCATCAGT 59.922 52.381 0.00 0.00 0.00 3.41
1693 1792 1.480137 GTCAGGAGTCAGGACCATCAG 59.520 57.143 0.00 0.00 0.00 2.90
1694 1793 1.561643 GTCAGGAGTCAGGACCATCA 58.438 55.000 0.00 0.00 0.00 3.07
1698 1797 3.007973 GCGGTCAGGAGTCAGGACC 62.008 68.421 18.00 18.00 46.01 4.46
1699 1798 2.219325 CTGCGGTCAGGAGTCAGGAC 62.219 65.000 5.16 5.16 36.68 3.85
1700 1799 1.979155 CTGCGGTCAGGAGTCAGGA 60.979 63.158 0.00 0.00 36.68 3.86
1701 1800 2.575993 CTGCGGTCAGGAGTCAGG 59.424 66.667 0.00 0.00 36.68 3.86
1788 3912 2.025418 GGTCGCGACGTTGGTCAAT 61.025 57.895 30.99 0.00 43.61 2.57
1822 3947 0.179000 GAGCCCTTGACATCCATCGT 59.821 55.000 0.00 0.00 0.00 3.73
1881 4006 1.424493 CGAGAGAGTGCCAATTCGCC 61.424 60.000 0.00 0.00 0.00 5.54
1908 4033 4.154347 GAGAGCCTCTGCCCCGTG 62.154 72.222 0.00 0.00 38.69 4.94
1947 4072 1.000506 GTGAACGTAAGAGTCTGCCCA 59.999 52.381 0.00 0.00 43.62 5.36
1981 4106 4.388499 GCCGAACTTCCAGCCGGA 62.388 66.667 5.05 0.00 44.29 5.14
1998 4123 1.806542 ACGTTGCTAGCAAATGTCTGG 59.193 47.619 30.83 15.66 37.70 3.86
2065 4190 0.609131 ACAACCTGTATGCCCACAGC 60.609 55.000 8.85 0.00 43.82 4.40
2136 4261 7.439356 CAGCAGTTGCATGTATATACAAGTACT 59.561 37.037 19.11 17.09 45.16 2.73
2145 4270 7.009179 AGGTATACAGCAGTTGCATGTATAT 57.991 36.000 23.40 14.57 42.38 0.86
2154 4279 9.935241 ATTGATATAAGAGGTATACAGCAGTTG 57.065 33.333 5.01 0.00 0.00 3.16
2239 5871 3.313007 CTTCCCGTGCGACGACGTA 62.313 63.158 9.33 0.68 46.05 3.57
2248 5880 1.675641 AAGTGATGCCTTCCCGTGC 60.676 57.895 0.00 0.00 0.00 5.34
2310 5942 8.640651 TGCTTCAAATATATGCATTGTAACCAT 58.359 29.630 3.54 0.00 0.00 3.55
2311 5943 8.005192 TGCTTCAAATATATGCATTGTAACCA 57.995 30.769 3.54 0.00 0.00 3.67
2312 5944 8.870160 TTGCTTCAAATATATGCATTGTAACC 57.130 30.769 3.54 0.00 33.50 2.85
2329 5961 9.606631 ACAACTTTAACCATTTATTTGCTTCAA 57.393 25.926 0.00 0.00 0.00 2.69
2330 5962 9.255304 GACAACTTTAACCATTTATTTGCTTCA 57.745 29.630 0.00 0.00 0.00 3.02
2331 5963 9.476202 AGACAACTTTAACCATTTATTTGCTTC 57.524 29.630 0.00 0.00 0.00 3.86
2332 5964 9.830975 AAGACAACTTTAACCATTTATTTGCTT 57.169 25.926 0.00 0.00 31.71 3.91
2333 5965 9.476202 GAAGACAACTTTAACCATTTATTTGCT 57.524 29.630 0.00 0.00 36.39 3.91
2334 5966 9.255304 TGAAGACAACTTTAACCATTTATTTGC 57.745 29.630 0.00 0.00 36.39 3.68
2340 5972 7.700656 CGACTTTGAAGACAACTTTAACCATTT 59.299 33.333 0.00 0.00 36.39 2.32
2341 5973 7.066525 TCGACTTTGAAGACAACTTTAACCATT 59.933 33.333 0.00 0.00 36.39 3.16
2342 5974 6.540914 TCGACTTTGAAGACAACTTTAACCAT 59.459 34.615 0.00 0.00 36.39 3.55
2343 5975 5.875910 TCGACTTTGAAGACAACTTTAACCA 59.124 36.000 0.00 0.00 36.39 3.67
2344 5976 6.354039 TCGACTTTGAAGACAACTTTAACC 57.646 37.500 0.00 0.00 36.39 2.85
2345 5977 8.836959 ATTTCGACTTTGAAGACAACTTTAAC 57.163 30.769 0.00 0.00 36.39 2.01
2346 5978 9.849166 AAATTTCGACTTTGAAGACAACTTTAA 57.151 25.926 0.00 0.00 36.39 1.52
2362 5994 8.053355 ACCATAAGGGAGAAATAAATTTCGACT 58.947 33.333 9.22 6.73 44.37 4.18
2363 5995 8.221965 ACCATAAGGGAGAAATAAATTTCGAC 57.778 34.615 9.22 7.94 44.37 4.20
2364 5996 8.817092 AACCATAAGGGAGAAATAAATTTCGA 57.183 30.769 9.22 0.00 44.37 3.71
2365 5997 9.301153 CAAACCATAAGGGAGAAATAAATTTCG 57.699 33.333 9.22 0.00 44.37 3.46
2370 6002 9.250246 CCTAACAAACCATAAGGGAGAAATAAA 57.750 33.333 0.00 0.00 41.15 1.40
2371 6003 8.616598 TCCTAACAAACCATAAGGGAGAAATAA 58.383 33.333 0.00 0.00 41.15 1.40
2372 6004 8.050930 GTCCTAACAAACCATAAGGGAGAAATA 58.949 37.037 0.00 0.00 41.15 1.40
2373 6005 6.890268 GTCCTAACAAACCATAAGGGAGAAAT 59.110 38.462 0.00 0.00 41.15 2.17
2374 6006 6.183361 TGTCCTAACAAACCATAAGGGAGAAA 60.183 38.462 0.00 0.00 34.46 2.52
2375 6007 5.311121 TGTCCTAACAAACCATAAGGGAGAA 59.689 40.000 0.00 0.00 34.46 2.87
2376 6008 4.847512 TGTCCTAACAAACCATAAGGGAGA 59.152 41.667 0.00 0.00 34.46 3.71
2377 6009 5.174037 TGTCCTAACAAACCATAAGGGAG 57.826 43.478 0.00 0.00 34.46 4.30
2378 6010 5.789574 ATGTCCTAACAAACCATAAGGGA 57.210 39.130 0.00 0.00 39.30 4.20
2379 6011 7.416326 GCTTTATGTCCTAACAAACCATAAGGG 60.416 40.741 0.00 0.00 39.30 3.95
2380 6012 7.480810 GCTTTATGTCCTAACAAACCATAAGG 58.519 38.462 0.00 0.00 39.30 2.69
2381 6013 7.186804 CGCTTTATGTCCTAACAAACCATAAG 58.813 38.462 0.00 0.00 39.30 1.73
2382 6014 6.094325 CCGCTTTATGTCCTAACAAACCATAA 59.906 38.462 0.00 0.00 39.30 1.90
2383 6015 5.587043 CCGCTTTATGTCCTAACAAACCATA 59.413 40.000 0.00 0.00 39.30 2.74
2384 6016 4.398044 CCGCTTTATGTCCTAACAAACCAT 59.602 41.667 0.00 0.00 39.30 3.55
2385 6017 3.754323 CCGCTTTATGTCCTAACAAACCA 59.246 43.478 0.00 0.00 39.30 3.67
2386 6018 3.128068 CCCGCTTTATGTCCTAACAAACC 59.872 47.826 0.00 0.00 39.30 3.27
2387 6019 3.754850 ACCCGCTTTATGTCCTAACAAAC 59.245 43.478 0.00 0.00 39.30 2.93
2388 6020 3.754323 CACCCGCTTTATGTCCTAACAAA 59.246 43.478 0.00 0.00 39.30 2.83
2389 6021 3.244630 ACACCCGCTTTATGTCCTAACAA 60.245 43.478 0.00 0.00 39.30 2.83
2390 6022 2.303600 ACACCCGCTTTATGTCCTAACA 59.696 45.455 0.00 0.00 40.38 2.41
2391 6023 2.934553 GACACCCGCTTTATGTCCTAAC 59.065 50.000 0.00 0.00 37.39 2.34
2392 6024 3.255969 GACACCCGCTTTATGTCCTAA 57.744 47.619 0.00 0.00 37.39 2.69
2393 6025 2.973694 GACACCCGCTTTATGTCCTA 57.026 50.000 0.00 0.00 37.39 2.94
2394 6026 3.855159 GACACCCGCTTTATGTCCT 57.145 52.632 0.00 0.00 37.39 3.85
2396 6028 1.369625 CTGGACACCCGCTTTATGTC 58.630 55.000 0.00 0.00 41.68 3.06
2397 6029 0.676782 GCTGGACACCCGCTTTATGT 60.677 55.000 0.00 0.00 34.29 2.29
2398 6030 1.705337 CGCTGGACACCCGCTTTATG 61.705 60.000 0.00 0.00 34.29 1.90
2399 6031 1.449601 CGCTGGACACCCGCTTTAT 60.450 57.895 0.00 0.00 34.29 1.40
2400 6032 2.047655 CGCTGGACACCCGCTTTA 60.048 61.111 0.00 0.00 34.29 1.85
2410 6042 3.860930 TTTTGGGAGCCCGCTGGAC 62.861 63.158 0.00 0.00 39.42 4.02
2411 6043 2.837031 GATTTTGGGAGCCCGCTGGA 62.837 60.000 0.00 0.00 39.42 3.86
2412 6044 2.362889 ATTTTGGGAGCCCGCTGG 60.363 61.111 0.29 0.00 39.42 4.85
2413 6045 2.418083 GGATTTTGGGAGCCCGCTG 61.418 63.158 0.29 0.00 39.42 5.18
2414 6046 2.043953 GGATTTTGGGAGCCCGCT 60.044 61.111 0.29 0.00 39.42 5.52
2415 6047 1.981853 TTGGATTTTGGGAGCCCGC 60.982 57.895 0.29 0.00 39.42 6.13
2416 6048 0.611896 AGTTGGATTTTGGGAGCCCG 60.612 55.000 0.29 0.00 39.42 6.13
2417 6049 0.897621 CAGTTGGATTTTGGGAGCCC 59.102 55.000 0.00 0.00 0.00 5.19
2418 6050 1.546029 GACAGTTGGATTTTGGGAGCC 59.454 52.381 0.00 0.00 0.00 4.70
2419 6051 2.519013 AGACAGTTGGATTTTGGGAGC 58.481 47.619 0.00 0.00 0.00 4.70
2420 6052 5.165961 TCTAGACAGTTGGATTTTGGGAG 57.834 43.478 0.00 0.00 0.00 4.30
2421 6053 5.779241 ATCTAGACAGTTGGATTTTGGGA 57.221 39.130 0.00 0.00 0.00 4.37
2422 6054 6.653989 ACTATCTAGACAGTTGGATTTTGGG 58.346 40.000 0.00 0.00 0.00 4.12
2423 6055 6.763610 GGACTATCTAGACAGTTGGATTTTGG 59.236 42.308 4.89 0.00 0.00 3.28
2424 6056 6.477033 CGGACTATCTAGACAGTTGGATTTTG 59.523 42.308 4.89 0.00 0.00 2.44
2425 6057 6.407074 CCGGACTATCTAGACAGTTGGATTTT 60.407 42.308 14.97 0.00 0.00 1.82
2426 6058 5.069251 CCGGACTATCTAGACAGTTGGATTT 59.931 44.000 14.97 0.00 0.00 2.17
2427 6059 4.585162 CCGGACTATCTAGACAGTTGGATT 59.415 45.833 14.97 0.00 0.00 3.01
2428 6060 4.141228 TCCGGACTATCTAGACAGTTGGAT 60.141 45.833 17.51 0.00 29.66 3.41
2429 6061 3.201487 TCCGGACTATCTAGACAGTTGGA 59.799 47.826 17.51 17.51 31.20 3.53
2430 6062 3.315749 GTCCGGACTATCTAGACAGTTGG 59.684 52.174 27.64 14.24 0.00 3.77
2431 6063 4.200874 AGTCCGGACTATCTAGACAGTTG 58.799 47.826 35.59 1.44 40.43 3.16
2432 6064 4.506937 AGTCCGGACTATCTAGACAGTT 57.493 45.455 35.59 6.84 40.43 3.16
2433 6065 4.453751 GAAGTCCGGACTATCTAGACAGT 58.546 47.826 36.42 17.45 41.58 3.55
2434 6066 3.816523 GGAAGTCCGGACTATCTAGACAG 59.183 52.174 36.42 0.00 41.58 3.51
2435 6067 3.434739 GGGAAGTCCGGACTATCTAGACA 60.435 52.174 36.42 0.00 41.58 3.41
2436 6068 3.148412 GGGAAGTCCGGACTATCTAGAC 58.852 54.545 36.42 19.73 41.58 2.59
2437 6069 2.781757 TGGGAAGTCCGGACTATCTAGA 59.218 50.000 36.42 16.01 41.58 2.43
2438 6070 3.225177 TGGGAAGTCCGGACTATCTAG 57.775 52.381 36.42 0.00 41.58 2.43
2439 6071 3.675348 TTGGGAAGTCCGGACTATCTA 57.325 47.619 36.42 24.68 41.58 1.98
2440 6072 2.544844 TTGGGAAGTCCGGACTATCT 57.455 50.000 36.42 22.20 41.58 1.98
2441 6073 3.622166 TTTTGGGAAGTCCGGACTATC 57.378 47.619 36.42 30.05 41.58 2.08
2442 6074 3.780850 AGATTTTGGGAAGTCCGGACTAT 59.219 43.478 36.42 23.77 41.58 2.12
2443 6075 3.178865 AGATTTTGGGAAGTCCGGACTA 58.821 45.455 36.42 19.98 41.58 2.59
2444 6076 1.985895 AGATTTTGGGAAGTCCGGACT 59.014 47.619 31.69 31.69 44.94 3.85
2445 6077 2.491675 AGATTTTGGGAAGTCCGGAC 57.508 50.000 27.67 27.67 38.76 4.79
2446 6078 2.504175 CCTAGATTTTGGGAAGTCCGGA 59.496 50.000 0.00 0.00 38.76 5.14
2447 6079 2.919228 CCTAGATTTTGGGAAGTCCGG 58.081 52.381 0.00 0.00 38.76 5.14
2448 6080 2.289565 GCCTAGATTTTGGGAAGTCCG 58.710 52.381 0.00 0.00 38.76 4.79
2449 6081 2.025321 TGGCCTAGATTTTGGGAAGTCC 60.025 50.000 3.32 0.00 0.00 3.85
2450 6082 3.366052 TGGCCTAGATTTTGGGAAGTC 57.634 47.619 3.32 0.00 0.00 3.01
2451 6083 3.529319 AGATGGCCTAGATTTTGGGAAGT 59.471 43.478 3.32 0.00 0.00 3.01
2452 6084 3.887716 CAGATGGCCTAGATTTTGGGAAG 59.112 47.826 3.32 0.00 0.00 3.46
2453 6085 3.269381 ACAGATGGCCTAGATTTTGGGAA 59.731 43.478 3.32 0.00 0.00 3.97
2454 6086 2.852449 ACAGATGGCCTAGATTTTGGGA 59.148 45.455 3.32 0.00 0.00 4.37
2455 6087 2.954318 CACAGATGGCCTAGATTTTGGG 59.046 50.000 3.32 0.00 0.00 4.12
2456 6088 2.954318 CCACAGATGGCCTAGATTTTGG 59.046 50.000 3.32 0.00 39.82 3.28
2457 6089 3.881688 CTCCACAGATGGCCTAGATTTTG 59.118 47.826 3.32 0.00 46.80 2.44
2458 6090 3.117738 CCTCCACAGATGGCCTAGATTTT 60.118 47.826 3.32 0.00 46.80 1.82
2459 6091 2.441001 CCTCCACAGATGGCCTAGATTT 59.559 50.000 3.32 0.00 46.80 2.17
2460 6092 2.053244 CCTCCACAGATGGCCTAGATT 58.947 52.381 3.32 0.00 46.80 2.40
2461 6093 1.221523 TCCTCCACAGATGGCCTAGAT 59.778 52.381 3.32 0.00 46.80 1.98
2462 6094 0.636647 TCCTCCACAGATGGCCTAGA 59.363 55.000 3.32 0.00 46.80 2.43
2463 6095 1.500474 TTCCTCCACAGATGGCCTAG 58.500 55.000 3.32 0.00 46.80 3.02
2464 6096 1.965414 TTTCCTCCACAGATGGCCTA 58.035 50.000 3.32 0.00 46.80 3.93
2465 6097 1.075601 TTTTCCTCCACAGATGGCCT 58.924 50.000 3.32 0.00 46.80 5.19
2466 6098 1.753073 CATTTTCCTCCACAGATGGCC 59.247 52.381 0.00 0.00 46.80 5.36
2467 6099 2.165030 CACATTTTCCTCCACAGATGGC 59.835 50.000 0.00 0.00 46.80 4.40
2469 6101 3.424703 ACCACATTTTCCTCCACAGATG 58.575 45.455 0.00 0.00 0.00 2.90
2470 6102 3.074390 TGACCACATTTTCCTCCACAGAT 59.926 43.478 0.00 0.00 0.00 2.90
2471 6103 2.441375 TGACCACATTTTCCTCCACAGA 59.559 45.455 0.00 0.00 0.00 3.41
2472 6104 2.862541 TGACCACATTTTCCTCCACAG 58.137 47.619 0.00 0.00 0.00 3.66
2473 6105 3.074390 AGATGACCACATTTTCCTCCACA 59.926 43.478 0.00 0.00 36.82 4.17
2474 6106 3.441572 CAGATGACCACATTTTCCTCCAC 59.558 47.826 0.00 0.00 36.82 4.02
2475 6107 3.561960 CCAGATGACCACATTTTCCTCCA 60.562 47.826 0.00 0.00 36.82 3.86
2476 6108 3.019564 CCAGATGACCACATTTTCCTCC 58.980 50.000 0.00 0.00 36.82 4.30
2477 6109 3.691609 GTCCAGATGACCACATTTTCCTC 59.308 47.826 0.00 0.00 38.09 3.71
2478 6110 3.331889 AGTCCAGATGACCACATTTTCCT 59.668 43.478 0.00 0.00 45.68 3.36
2479 6111 3.690460 AGTCCAGATGACCACATTTTCC 58.310 45.455 0.00 0.00 45.68 3.13
2480 6112 5.529060 GGATAGTCCAGATGACCACATTTTC 59.471 44.000 0.00 0.00 45.68 2.29
2481 6113 5.440610 GGATAGTCCAGATGACCACATTTT 58.559 41.667 0.00 0.00 45.68 1.82
2482 6114 4.443457 CGGATAGTCCAGATGACCACATTT 60.443 45.833 0.00 0.00 45.68 2.32
2483 6115 3.070159 CGGATAGTCCAGATGACCACATT 59.930 47.826 0.00 0.00 45.68 2.71
2484 6116 2.630098 CGGATAGTCCAGATGACCACAT 59.370 50.000 0.00 0.00 45.68 3.21
2485 6117 2.031870 CGGATAGTCCAGATGACCACA 58.968 52.381 0.00 0.00 45.68 4.17
2486 6118 1.269831 GCGGATAGTCCAGATGACCAC 60.270 57.143 0.00 0.00 45.68 4.16
2487 6119 1.040646 GCGGATAGTCCAGATGACCA 58.959 55.000 0.00 0.00 45.68 4.02
2488 6120 0.318762 GGCGGATAGTCCAGATGACC 59.681 60.000 0.00 0.00 45.68 4.02
2489 6121 0.039074 CGGCGGATAGTCCAGATGAC 60.039 60.000 0.00 0.00 44.82 3.06
2490 6122 0.467474 ACGGCGGATAGTCCAGATGA 60.467 55.000 13.24 0.00 35.91 2.92
2491 6123 0.319040 CACGGCGGATAGTCCAGATG 60.319 60.000 13.24 0.00 35.91 2.90
2492 6124 2.041976 CACGGCGGATAGTCCAGAT 58.958 57.895 13.24 0.00 35.91 2.90
2493 6125 2.782222 GCACGGCGGATAGTCCAGA 61.782 63.158 13.24 0.00 35.91 3.86
2494 6126 1.452953 TAGCACGGCGGATAGTCCAG 61.453 60.000 13.24 0.00 35.91 3.86
2495 6127 0.826256 ATAGCACGGCGGATAGTCCA 60.826 55.000 13.24 0.00 35.91 4.02
2496 6128 1.171308 TATAGCACGGCGGATAGTCC 58.829 55.000 13.24 0.00 0.00 3.85
2497 6129 2.683867 AGATATAGCACGGCGGATAGTC 59.316 50.000 13.24 6.33 0.00 2.59
2498 6130 2.724454 AGATATAGCACGGCGGATAGT 58.276 47.619 13.24 0.00 0.00 2.12
2499 6131 4.335874 AGTTAGATATAGCACGGCGGATAG 59.664 45.833 13.24 0.00 0.00 2.08
2500 6132 4.267536 AGTTAGATATAGCACGGCGGATA 58.732 43.478 13.24 3.60 0.00 2.59
2501 6133 3.090037 AGTTAGATATAGCACGGCGGAT 58.910 45.455 13.24 0.95 0.00 4.18
2502 6134 2.511659 AGTTAGATATAGCACGGCGGA 58.488 47.619 13.24 0.00 0.00 5.54
2503 6135 3.189910 TGTAGTTAGATATAGCACGGCGG 59.810 47.826 13.24 0.66 0.00 6.13
2504 6136 4.414999 TGTAGTTAGATATAGCACGGCG 57.585 45.455 4.80 4.80 0.00 6.46
2505 6137 6.700520 ACTTTTGTAGTTAGATATAGCACGGC 59.299 38.462 0.00 0.00 31.29 5.68
2506 6138 9.178427 GTACTTTTGTAGTTAGATATAGCACGG 57.822 37.037 0.00 0.00 38.33 4.94
2507 6139 8.889975 CGTACTTTTGTAGTTAGATATAGCACG 58.110 37.037 0.00 0.00 38.33 5.34
2508 6140 9.941664 TCGTACTTTTGTAGTTAGATATAGCAC 57.058 33.333 0.00 0.00 38.33 4.40
2510 6142 9.116054 GCTCGTACTTTTGTAGTTAGATATAGC 57.884 37.037 0.00 0.00 38.33 2.97
2513 6145 8.900781 TGAGCTCGTACTTTTGTAGTTAGATAT 58.099 33.333 9.64 0.00 38.33 1.63
2514 6146 8.272545 TGAGCTCGTACTTTTGTAGTTAGATA 57.727 34.615 9.64 0.00 38.33 1.98
2515 6147 7.094291 ACTGAGCTCGTACTTTTGTAGTTAGAT 60.094 37.037 9.64 0.00 38.33 1.98
2516 6148 6.206243 ACTGAGCTCGTACTTTTGTAGTTAGA 59.794 38.462 9.64 0.00 38.33 2.10
2517 6149 6.380190 ACTGAGCTCGTACTTTTGTAGTTAG 58.620 40.000 9.64 0.00 38.33 2.34
2518 6150 6.323203 ACTGAGCTCGTACTTTTGTAGTTA 57.677 37.500 9.64 0.00 38.33 2.24
2529 6161 1.805945 CCCGCAACTGAGCTCGTAC 60.806 63.158 9.64 5.60 0.00 3.67
2547 6179 1.569479 GCTGCAAGTCGACCCTTGAC 61.569 60.000 18.66 11.45 43.65 3.18
2559 6191 2.336945 TATCACATCCCAGCTGCAAG 57.663 50.000 8.66 0.00 0.00 4.01
2574 6206 4.314522 TTCCTTGCACTTGGGATTATCA 57.685 40.909 0.00 0.00 0.00 2.15
2578 6210 3.242011 ACAATTCCTTGCACTTGGGATT 58.758 40.909 0.00 0.00 35.69 3.01
2628 6260 1.733399 GGTTCGACACTCCGTGCTC 60.733 63.158 0.00 0.00 36.98 4.26
2631 6263 1.663702 GTGGGTTCGACACTCCGTG 60.664 63.158 0.00 0.00 39.75 4.94
2633 6265 0.944311 CTTGTGGGTTCGACACTCCG 60.944 60.000 6.26 0.00 39.52 4.63
2659 6291 4.928615 CGGAGAGAATATTGATCTTGCCTC 59.071 45.833 0.00 0.00 0.00 4.70
2671 6303 4.896482 GGCATATAGGACCGGAGAGAATAT 59.104 45.833 9.46 1.84 0.00 1.28
2677 6309 1.147191 AGTGGCATATAGGACCGGAGA 59.853 52.381 9.46 0.00 0.00 3.71
2681 6313 3.509967 TGTATCAGTGGCATATAGGACCG 59.490 47.826 0.00 0.00 0.00 4.79
2690 6322 3.459598 ACATAGGGTTGTATCAGTGGCAT 59.540 43.478 0.00 0.00 0.00 4.40
2714 6346 3.241067 AGATAAAGCAAACGCTCGGTA 57.759 42.857 0.00 0.00 39.40 4.02
2754 6386 3.297134 ACATCTTTATGCCCGGAACAT 57.703 42.857 0.73 9.31 36.50 2.71
2759 6391 2.550830 AGCTACATCTTTATGCCCGG 57.449 50.000 0.00 0.00 36.50 5.73
2761 6393 3.381272 TGCAAAGCTACATCTTTATGCCC 59.619 43.478 0.00 0.00 36.50 5.36
2772 6404 7.121020 TGTCATTCATTATCTTGCAAAGCTACA 59.879 33.333 0.00 0.00 45.70 2.74
2795 6427 7.043656 GCGGCACCTAAAATTTATGTTTATGTC 60.044 37.037 0.00 0.00 0.00 3.06
2846 6478 6.183360 CCATCAATATTCCACACTCGATATGC 60.183 42.308 0.00 0.00 0.00 3.14
2847 6479 6.875726 ACCATCAATATTCCACACTCGATATG 59.124 38.462 0.00 0.00 0.00 1.78
2851 6483 4.753516 ACCATCAATATTCCACACTCGA 57.246 40.909 0.00 0.00 0.00 4.04
2865 6497 3.797559 TTCCACACACCATACCATCAA 57.202 42.857 0.00 0.00 0.00 2.57
2868 6500 4.016444 GACAATTCCACACACCATACCAT 58.984 43.478 0.00 0.00 0.00 3.55
2906 6538 5.727791 GCAATGATGATCGGTTCAGTAACAC 60.728 44.000 0.00 0.00 37.89 3.32
2907 6539 4.332543 GCAATGATGATCGGTTCAGTAACA 59.667 41.667 0.00 0.00 37.89 2.41
2944 6576 0.758123 ATGCTAGCAGAAGCCTCTCC 59.242 55.000 23.89 0.00 42.05 3.71
2952 6584 0.179009 GGGATGGCATGCTAGCAGAA 60.179 55.000 23.89 8.63 35.83 3.02
2960 6592 2.057137 TCAAGTAAGGGATGGCATGC 57.943 50.000 9.90 9.90 0.00 4.06
2988 6620 7.539712 TGCTAATAGTTTCAGTCATAAGTGC 57.460 36.000 0.00 0.00 0.00 4.40
2991 6623 8.201554 TGCTTGCTAATAGTTTCAGTCATAAG 57.798 34.615 0.00 0.00 0.00 1.73
2998 6630 4.553547 GCGGATGCTTGCTAATAGTTTCAG 60.554 45.833 0.00 0.00 38.39 3.02
3001 6633 3.278574 TGCGGATGCTTGCTAATAGTTT 58.721 40.909 0.00 0.00 43.34 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.