Multiple sequence alignment - TraesCS7D01G386800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G386800 chr7D 100.000 3505 0 0 2666 6170 500973184 500969680 0.000000e+00 6473.0
1 TraesCS7D01G386800 chr7D 100.000 2301 0 0 1 2301 500975849 500973549 0.000000e+00 4250.0
2 TraesCS7D01G386800 chr7A 97.145 3363 58 15 2770 6115 567455579 567452238 0.000000e+00 5644.0
3 TraesCS7D01G386800 chr7A 92.857 2086 100 19 199 2245 567457873 567455798 0.000000e+00 2981.0
4 TraesCS7D01G386800 chr7A 99.000 100 1 0 6071 6170 567452225 567452126 4.910000e-41 180.0
5 TraesCS7D01G386800 chr7A 87.755 147 15 1 69 212 567475186 567475040 1.060000e-37 169.0
6 TraesCS7D01G386800 chr7A 86.441 118 10 6 5950 6065 18754185 18754298 2.340000e-24 124.0
7 TraesCS7D01G386800 chr7A 96.078 51 2 0 2668 2718 567455627 567455577 3.960000e-12 84.2
8 TraesCS7D01G386800 chr7B 95.968 2381 74 10 3318 5683 529956300 529953927 0.000000e+00 3845.0
9 TraesCS7D01G386800 chr7B 89.351 2235 135 45 78 2244 529959502 529957303 0.000000e+00 2713.0
10 TraesCS7D01G386800 chr7B 88.151 557 22 20 2802 3321 529956929 529956380 1.890000e-174 623.0
11 TraesCS7D01G386800 chr6D 81.330 391 59 13 3570 3954 138907380 138907762 7.770000e-79 305.0
12 TraesCS7D01G386800 chr6D 82.548 361 34 11 994 1326 138904556 138904915 2.180000e-74 291.0
13 TraesCS7D01G386800 chr6D 86.239 109 15 0 1220 1328 441899548 441899440 1.090000e-22 119.0
14 TraesCS7D01G386800 chr6A 81.074 391 60 13 3570 3954 181567783 181568165 3.620000e-77 300.0
15 TraesCS7D01G386800 chr6A 89.862 217 22 0 1110 1326 181563733 181563949 4.710000e-71 279.0
16 TraesCS7D01G386800 chr6A 86.239 109 15 0 1220 1328 591267554 591267446 1.090000e-22 119.0
17 TraesCS7D01G386800 chr6B 80.818 391 61 13 3570 3954 238170529 238170911 1.680000e-75 294.0
18 TraesCS7D01G386800 chr6B 82.500 360 36 9 994 1326 238167826 238168185 2.180000e-74 291.0
19 TraesCS7D01G386800 chr6B 86.239 109 15 0 1220 1328 667899841 667899733 1.090000e-22 119.0
20 TraesCS7D01G386800 chr6B 78.488 172 29 6 5881 6045 103957645 103957475 8.460000e-19 106.0
21 TraesCS7D01G386800 chr6B 77.540 187 27 13 5869 6045 527935686 527935867 1.420000e-16 99.0
22 TraesCS7D01G386800 chrUn 84.615 117 14 4 5950 6065 309058955 309058842 5.050000e-21 113.0
23 TraesCS7D01G386800 chrUn 84.615 117 14 4 5950 6065 391832881 391832768 5.050000e-21 113.0
24 TraesCS7D01G386800 chrUn 84.615 117 14 4 5950 6065 436571635 436571748 5.050000e-21 113.0
25 TraesCS7D01G386800 chr5A 82.105 95 14 3 5950 6042 25024927 25024834 1.840000e-10 78.7
26 TraesCS7D01G386800 chr3B 82.000 100 11 6 5950 6045 501519033 501519129 1.840000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G386800 chr7D 500969680 500975849 6169 True 5361.500000 6473 100.000000 1 6170 2 chr7D.!!$R1 6169
1 TraesCS7D01G386800 chr7A 567452126 567457873 5747 True 2222.300000 5644 96.270000 199 6170 4 chr7A.!!$R2 5971
2 TraesCS7D01G386800 chr7B 529953927 529959502 5575 True 2393.666667 3845 91.156667 78 5683 3 chr7B.!!$R1 5605
3 TraesCS7D01G386800 chr6D 138904556 138907762 3206 False 298.000000 305 81.939000 994 3954 2 chr6D.!!$F1 2960
4 TraesCS7D01G386800 chr6A 181563733 181568165 4432 False 289.500000 300 85.468000 1110 3954 2 chr6A.!!$F1 2844
5 TraesCS7D01G386800 chr6B 238167826 238170911 3085 False 292.500000 294 81.659000 994 3954 2 chr6B.!!$F2 2960

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.522495 ATTTTATCACCAACGCGCGC 60.522 50.000 32.58 23.91 0.00 6.86 F
64 65 0.530650 CGCGCCATCATGGTCTAGTT 60.531 55.000 5.31 0.00 40.46 2.24 F
549 558 0.986019 TAAGGTCCATGCCACCCGAT 60.986 55.000 8.16 0.02 33.96 4.18 F
1594 2164 1.152922 GGTTGTTGAACCCACGGGA 60.153 57.895 9.72 0.00 45.48 5.14 F
2280 3387 0.396435 ACGTGAGGCCATTGAGTTCA 59.604 50.000 5.01 0.00 0.00 3.18 F
2281 3388 0.798776 CGTGAGGCCATTGAGTTCAC 59.201 55.000 5.01 7.28 35.88 3.18 F
4446 7834 1.202770 ACAACTCTTTCCTTGGACGGG 60.203 52.381 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1592 2162 0.179045 CCTCACGGACATTCCCATCC 60.179 60.000 0.00 0.0 31.13 3.51 R
1593 2163 0.815615 GCCTCACGGACATTCCCATC 60.816 60.000 0.00 0.0 31.13 3.51 R
2261 3368 0.396435 TGAACTCAATGGCCTCACGT 59.604 50.000 3.32 0.0 0.00 4.49 R
3188 6479 1.298602 CATATTGTAGCTGCCACGCA 58.701 50.000 0.00 0.0 36.92 5.24 R
4202 7582 2.364973 TGGCGGCTAGGGTCATCA 60.365 61.111 11.43 0.0 0.00 3.07 R
4462 7850 5.943349 TCTCTTCCCGAAACACCATAATA 57.057 39.130 0.00 0.0 0.00 0.98 R
5662 9052 0.592148 CTGCGACGGAGGGAGTATAC 59.408 60.000 8.71 0.0 0.00 1.47 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.938047 CAAATTCTGCAAATTTTATCACCAAC 57.062 30.769 13.46 0.00 0.00 3.77
44 45 6.949578 ATTCTGCAAATTTTATCACCAACG 57.050 33.333 0.00 0.00 0.00 4.10
45 46 4.233789 TCTGCAAATTTTATCACCAACGC 58.766 39.130 0.00 0.00 0.00 4.84
46 47 2.983136 TGCAAATTTTATCACCAACGCG 59.017 40.909 3.53 3.53 0.00 6.01
47 48 2.222486 GCAAATTTTATCACCAACGCGC 60.222 45.455 5.73 0.00 0.00 6.86
48 49 1.889891 AATTTTATCACCAACGCGCG 58.110 45.000 30.96 30.96 0.00 6.86
49 50 0.522495 ATTTTATCACCAACGCGCGC 60.522 50.000 32.58 23.91 0.00 6.86
50 51 2.515947 TTTTATCACCAACGCGCGCC 62.516 55.000 32.58 8.11 0.00 6.53
51 52 4.743975 TATCACCAACGCGCGCCA 62.744 61.111 32.58 7.61 0.00 5.69
56 57 4.892379 CCAACGCGCGCCATCATG 62.892 66.667 32.58 18.15 0.00 3.07
57 58 4.892379 CAACGCGCGCCATCATGG 62.892 66.667 32.58 12.27 41.55 3.66
61 62 2.280119 GCGCGCCATCATGGTCTA 60.280 61.111 23.24 0.00 40.46 2.59
62 63 2.313172 GCGCGCCATCATGGTCTAG 61.313 63.158 23.24 0.00 40.46 2.43
63 64 1.068083 CGCGCCATCATGGTCTAGT 59.932 57.895 5.31 0.00 40.46 2.57
64 65 0.530650 CGCGCCATCATGGTCTAGTT 60.531 55.000 5.31 0.00 40.46 2.24
65 66 1.221414 GCGCCATCATGGTCTAGTTC 58.779 55.000 5.31 0.00 40.46 3.01
66 67 1.473257 GCGCCATCATGGTCTAGTTCA 60.473 52.381 5.31 0.00 40.46 3.18
67 68 2.905075 CGCCATCATGGTCTAGTTCAA 58.095 47.619 5.31 0.00 40.46 2.69
68 69 2.609459 CGCCATCATGGTCTAGTTCAAC 59.391 50.000 5.31 0.00 40.46 3.18
69 70 3.609853 GCCATCATGGTCTAGTTCAACA 58.390 45.455 5.31 0.00 40.46 3.33
70 71 4.202441 GCCATCATGGTCTAGTTCAACAT 58.798 43.478 5.31 0.00 40.46 2.71
71 72 5.368145 GCCATCATGGTCTAGTTCAACATA 58.632 41.667 5.31 0.00 40.46 2.29
72 73 6.000219 GCCATCATGGTCTAGTTCAACATAT 59.000 40.000 5.31 0.00 40.46 1.78
73 74 7.161404 GCCATCATGGTCTAGTTCAACATATA 58.839 38.462 5.31 0.00 40.46 0.86
74 75 7.826252 GCCATCATGGTCTAGTTCAACATATAT 59.174 37.037 5.31 0.00 40.46 0.86
75 76 9.159364 CCATCATGGTCTAGTTCAACATATATG 57.841 37.037 11.29 11.29 31.35 1.78
76 77 9.716531 CATCATGGTCTAGTTCAACATATATGT 57.283 33.333 12.75 12.75 44.20 2.29
104 105 7.423844 TGATATGAATAGTGACCACTTCTGT 57.576 36.000 8.06 0.00 42.54 3.41
118 119 5.124776 ACCACTTCTGTTCTAGATCGAGAAG 59.875 44.000 23.84 23.84 43.48 2.85
120 121 6.189677 ACTTCTGTTCTAGATCGAGAAGTG 57.810 41.667 26.77 13.03 46.99 3.16
123 124 6.665474 TCTGTTCTAGATCGAGAAGTGTAC 57.335 41.667 17.41 7.87 36.13 2.90
315 322 4.598062 GCTTAGCCATTTAAACATCGACC 58.402 43.478 0.00 0.00 0.00 4.79
317 324 5.221048 GCTTAGCCATTTAAACATCGACCAT 60.221 40.000 0.00 0.00 0.00 3.55
318 325 4.637483 AGCCATTTAAACATCGACCATG 57.363 40.909 0.00 0.00 38.64 3.66
338 345 3.382048 GGACGTACTCCAAACTTGTCT 57.618 47.619 0.00 0.00 39.21 3.41
342 349 2.724690 CGTACTCCAAACTTGTCTGACG 59.275 50.000 2.98 0.00 0.00 4.35
344 351 4.555313 CGTACTCCAAACTTGTCTGACGTA 60.555 45.833 2.98 0.00 0.00 3.57
368 375 7.726033 AGTTGAAGATAGAGTAGGAACACAT 57.274 36.000 0.00 0.00 0.00 3.21
370 377 8.908903 AGTTGAAGATAGAGTAGGAACACATAG 58.091 37.037 0.00 0.00 0.00 2.23
379 386 1.492176 AGGAACACATAGCCTCATGGG 59.508 52.381 0.00 0.00 35.33 4.00
451 459 2.157085 CGTTGAAAAAGACGCCTACCTC 59.843 50.000 0.00 0.00 32.11 3.85
453 461 3.314541 TGAAAAAGACGCCTACCTCTC 57.685 47.619 0.00 0.00 0.00 3.20
465 473 4.864334 CCTCTCCACCGCCATGCC 62.864 72.222 0.00 0.00 0.00 4.40
481 489 2.413765 CCGCCGCTCTCTAGGAAC 59.586 66.667 0.00 0.00 0.00 3.62
482 490 2.024871 CGCCGCTCTCTAGGAACG 59.975 66.667 0.00 0.00 33.80 3.95
487 495 2.260481 CCGCTCTCTAGGAACGAAAAC 58.740 52.381 0.00 0.00 35.78 2.43
488 496 2.352421 CCGCTCTCTAGGAACGAAAACA 60.352 50.000 0.00 0.00 35.78 2.83
517 525 9.444534 GAAAAACACAAGAAAACAAACAAACAT 57.555 25.926 0.00 0.00 0.00 2.71
549 558 0.986019 TAAGGTCCATGCCACCCGAT 60.986 55.000 8.16 0.02 33.96 4.18
648 657 1.794512 TTCGTTACGTGCCCTAAACC 58.205 50.000 4.24 0.00 0.00 3.27
707 746 5.703130 ACTCAAGAGCCTAATGACAACTTTC 59.297 40.000 0.00 0.00 0.00 2.62
800 843 1.602323 CCCACCCGCAGCTTAACAA 60.602 57.895 0.00 0.00 0.00 2.83
923 967 1.768077 CATCTCTCCACCCTCCCCC 60.768 68.421 0.00 0.00 0.00 5.40
1326 1397 1.354101 ACGTCAACCTCATGGGGTAA 58.646 50.000 20.21 6.68 38.87 2.85
1375 1446 6.751514 TTTCGTTATGAATTATGGTGCTGT 57.248 33.333 0.00 0.00 36.22 4.40
1385 1583 2.762535 ATGGTGCTGTTAGCGTTAGT 57.237 45.000 0.00 0.00 46.26 2.24
1403 1604 2.858745 AGTTTGCTTGATTACGGTGGT 58.141 42.857 0.00 0.00 0.00 4.16
1409 1610 2.934553 GCTTGATTACGGTGGTAGGAAC 59.065 50.000 0.00 0.00 0.00 3.62
1446 1763 2.660572 TGACTGCTTGGGTTTTGCTTA 58.339 42.857 0.00 0.00 0.00 3.09
1452 1790 2.698803 CTTGGGTTTTGCTTATTGGGC 58.301 47.619 0.00 0.00 0.00 5.36
1454 1792 1.275666 GGGTTTTGCTTATTGGGCCT 58.724 50.000 4.53 0.00 0.00 5.19
1593 2163 3.439008 GGTTGTTGAACCCACGGG 58.561 61.111 0.00 0.00 45.48 5.28
1594 2164 1.152922 GGTTGTTGAACCCACGGGA 60.153 57.895 9.72 0.00 45.48 5.14
1605 2175 1.152963 CCACGGGATGGGAATGTCC 60.153 63.158 0.00 0.00 45.95 4.02
1649 2219 1.255667 TGGTCCGAAGACTAGGCCAC 61.256 60.000 5.01 0.00 43.05 5.01
1728 2298 6.349300 TGTTAGAGGATTTAGGACTGATTGC 58.651 40.000 0.00 0.00 0.00 3.56
1729 2299 4.065321 AGAGGATTTAGGACTGATTGCG 57.935 45.455 0.00 0.00 0.00 4.85
1813 2383 4.506654 TCACTGCTAGAGTCGTTTGAAAAC 59.493 41.667 0.00 0.00 29.75 2.43
1879 2450 7.446319 AGTGTTGAATTGTGAATCTTCTGATCA 59.554 33.333 0.00 0.00 31.51 2.92
1886 2457 8.674263 ATTGTGAATCTTCTGATCATACCTTC 57.326 34.615 0.00 0.00 31.51 3.46
1898 2469 9.770097 TCTGATCATACCTTCAATAATTCAGTC 57.230 33.333 0.00 0.00 0.00 3.51
1927 2498 2.567169 ACTGAAGATCCATTGTGTCGGA 59.433 45.455 0.00 0.00 35.27 4.55
2018 3008 6.672593 ACCAATATTAAGATTCTTGCCCTGA 58.327 36.000 9.22 0.00 0.00 3.86
2087 3193 9.730420 CCGTTTGGATATTTATTTTTCCTAGTG 57.270 33.333 0.00 0.00 37.49 2.74
2210 3317 4.437239 TGTTGTACCTGCAAAATTGGTTG 58.563 39.130 0.00 0.00 35.48 3.77
2247 3354 9.290483 GAAGTTTTAGCTATAGATTTGTTTGCC 57.710 33.333 3.21 0.00 0.00 4.52
2248 3355 7.472543 AGTTTTAGCTATAGATTTGTTTGCCG 58.527 34.615 3.21 0.00 0.00 5.69
2249 3356 7.335924 AGTTTTAGCTATAGATTTGTTTGCCGA 59.664 33.333 3.21 0.00 0.00 5.54
2250 3357 7.618502 TTTAGCTATAGATTTGTTTGCCGAA 57.381 32.000 3.21 0.00 0.00 4.30
2251 3358 5.741388 AGCTATAGATTTGTTTGCCGAAG 57.259 39.130 3.21 0.00 0.00 3.79
2252 3359 5.186198 AGCTATAGATTTGTTTGCCGAAGT 58.814 37.500 3.21 0.00 0.00 3.01
2253 3360 5.294552 AGCTATAGATTTGTTTGCCGAAGTC 59.705 40.000 3.21 0.00 0.00 3.01
2254 3361 5.294552 GCTATAGATTTGTTTGCCGAAGTCT 59.705 40.000 3.21 0.00 0.00 3.24
2255 3362 6.479001 GCTATAGATTTGTTTGCCGAAGTCTA 59.521 38.462 3.21 0.00 0.00 2.59
2260 3367 8.106247 AGATTTGTTTGCCGAAGTCTATTAAA 57.894 30.769 0.00 0.00 0.00 1.52
2261 3368 8.573035 AGATTTGTTTGCCGAAGTCTATTAAAA 58.427 29.630 0.00 0.00 0.00 1.52
2262 3369 7.917720 TTTGTTTGCCGAAGTCTATTAAAAC 57.082 32.000 0.00 0.00 0.00 2.43
2263 3370 5.681880 TGTTTGCCGAAGTCTATTAAAACG 58.318 37.500 0.00 0.00 0.00 3.60
2264 3371 5.236911 TGTTTGCCGAAGTCTATTAAAACGT 59.763 36.000 0.00 0.00 0.00 3.99
2265 3372 4.914312 TGCCGAAGTCTATTAAAACGTG 57.086 40.909 0.00 0.00 0.00 4.49
2266 3373 4.558178 TGCCGAAGTCTATTAAAACGTGA 58.442 39.130 0.00 0.00 0.00 4.35
2267 3374 4.624024 TGCCGAAGTCTATTAAAACGTGAG 59.376 41.667 0.00 0.00 0.00 3.51
2268 3375 4.032558 GCCGAAGTCTATTAAAACGTGAGG 59.967 45.833 0.00 0.00 0.00 3.86
2269 3376 4.032558 CCGAAGTCTATTAAAACGTGAGGC 59.967 45.833 0.00 0.00 0.00 4.70
2270 3377 4.032558 CGAAGTCTATTAAAACGTGAGGCC 59.967 45.833 0.00 0.00 0.00 5.19
2271 3378 4.546829 AGTCTATTAAAACGTGAGGCCA 57.453 40.909 5.01 0.00 0.00 5.36
2272 3379 5.099042 AGTCTATTAAAACGTGAGGCCAT 57.901 39.130 5.01 0.00 0.00 4.40
2273 3380 5.497474 AGTCTATTAAAACGTGAGGCCATT 58.503 37.500 5.01 0.00 0.00 3.16
2274 3381 5.354234 AGTCTATTAAAACGTGAGGCCATTG 59.646 40.000 5.01 0.00 0.00 2.82
2275 3382 5.353123 GTCTATTAAAACGTGAGGCCATTGA 59.647 40.000 5.01 0.00 0.00 2.57
2276 3383 4.701956 ATTAAAACGTGAGGCCATTGAG 57.298 40.909 5.01 0.00 0.00 3.02
2277 3384 1.981256 AAAACGTGAGGCCATTGAGT 58.019 45.000 5.01 0.00 0.00 3.41
2278 3385 1.981256 AAACGTGAGGCCATTGAGTT 58.019 45.000 5.01 1.23 0.00 3.01
2279 3386 1.523758 AACGTGAGGCCATTGAGTTC 58.476 50.000 5.01 0.00 0.00 3.01
2280 3387 0.396435 ACGTGAGGCCATTGAGTTCA 59.604 50.000 5.01 0.00 0.00 3.18
2281 3388 0.798776 CGTGAGGCCATTGAGTTCAC 59.201 55.000 5.01 7.28 35.88 3.18
2282 3389 1.877680 CGTGAGGCCATTGAGTTCACA 60.878 52.381 16.54 0.00 38.38 3.58
2283 3390 2.440409 GTGAGGCCATTGAGTTCACAT 58.560 47.619 5.01 0.00 38.36 3.21
2284 3391 2.821969 GTGAGGCCATTGAGTTCACATT 59.178 45.455 5.01 0.00 38.36 2.71
2285 3392 3.256631 GTGAGGCCATTGAGTTCACATTT 59.743 43.478 5.01 0.00 38.36 2.32
2286 3393 4.458989 GTGAGGCCATTGAGTTCACATTTA 59.541 41.667 5.01 0.00 38.36 1.40
2287 3394 5.048083 GTGAGGCCATTGAGTTCACATTTAA 60.048 40.000 5.01 0.00 38.36 1.52
2288 3395 5.716228 TGAGGCCATTGAGTTCACATTTAAT 59.284 36.000 5.01 0.00 0.00 1.40
2289 3396 6.211184 TGAGGCCATTGAGTTCACATTTAATT 59.789 34.615 5.01 0.00 0.00 1.40
2290 3397 6.633856 AGGCCATTGAGTTCACATTTAATTC 58.366 36.000 5.01 0.00 0.00 2.17
2291 3398 6.438425 AGGCCATTGAGTTCACATTTAATTCT 59.562 34.615 5.01 0.00 0.00 2.40
2292 3399 7.038799 AGGCCATTGAGTTCACATTTAATTCTT 60.039 33.333 5.01 0.00 0.00 2.52
2293 3400 7.063780 GGCCATTGAGTTCACATTTAATTCTTG 59.936 37.037 0.00 0.00 0.00 3.02
2294 3401 7.063780 GCCATTGAGTTCACATTTAATTCTTGG 59.936 37.037 0.00 0.00 0.00 3.61
2295 3402 8.090214 CCATTGAGTTCACATTTAATTCTTGGT 58.910 33.333 0.00 0.00 0.00 3.67
2296 3403 9.480053 CATTGAGTTCACATTTAATTCTTGGTT 57.520 29.630 0.00 0.00 0.00 3.67
2297 3404 9.696917 ATTGAGTTCACATTTAATTCTTGGTTC 57.303 29.630 0.00 0.00 0.00 3.62
2298 3405 8.463930 TGAGTTCACATTTAATTCTTGGTTCT 57.536 30.769 0.00 0.00 0.00 3.01
2299 3406 8.912988 TGAGTTCACATTTAATTCTTGGTTCTT 58.087 29.630 0.00 0.00 0.00 2.52
2300 3407 9.399403 GAGTTCACATTTAATTCTTGGTTCTTC 57.601 33.333 0.00 0.00 0.00 2.87
2720 3827 6.456988 GGCACTTTGATTAGAACTATTGTCCG 60.457 42.308 0.00 0.00 0.00 4.79
2722 3829 7.360946 GCACTTTGATTAGAACTATTGTCCGTT 60.361 37.037 0.00 0.00 0.00 4.44
2724 3831 8.718734 ACTTTGATTAGAACTATTGTCCGTTTC 58.281 33.333 0.00 0.00 0.00 2.78
2725 3832 8.842358 TTTGATTAGAACTATTGTCCGTTTCT 57.158 30.769 0.00 0.00 0.00 2.52
2728 3835 8.932791 TGATTAGAACTATTGTCCGTTTCTTTC 58.067 33.333 0.00 0.00 0.00 2.62
2733 3840 5.374071 ACTATTGTCCGTTTCTTTCCAGTT 58.626 37.500 0.00 0.00 0.00 3.16
2736 3843 2.092861 TGTCCGTTTCTTTCCAGTTCCA 60.093 45.455 0.00 0.00 0.00 3.53
2739 3846 2.949644 CCGTTTCTTTCCAGTTCCAAGT 59.050 45.455 0.00 0.00 0.00 3.16
2746 3853 8.414003 GTTTCTTTCCAGTTCCAAGTTTAGATT 58.586 33.333 0.00 0.00 0.00 2.40
2748 3855 7.518188 TCTTTCCAGTTCCAAGTTTAGATTCT 58.482 34.615 0.00 0.00 0.00 2.40
2749 3856 7.661847 TCTTTCCAGTTCCAAGTTTAGATTCTC 59.338 37.037 0.00 0.00 0.00 2.87
2751 3858 7.079451 TCCAGTTCCAAGTTTAGATTCTCTT 57.921 36.000 0.00 0.00 0.00 2.85
2753 3860 8.826765 TCCAGTTCCAAGTTTAGATTCTCTTAT 58.173 33.333 0.00 0.00 0.00 1.73
2756 3863 9.883142 AGTTCCAAGTTTAGATTCTCTTATCAG 57.117 33.333 0.00 0.00 0.00 2.90
2757 3864 9.660180 GTTCCAAGTTTAGATTCTCTTATCAGT 57.340 33.333 0.00 0.00 0.00 3.41
2765 3872 9.793259 TTTAGATTCTCTTATCAGTTTTGGTGT 57.207 29.630 0.00 0.00 0.00 4.16
2768 3875 8.043710 AGATTCTCTTATCAGTTTTGGTGTAGG 58.956 37.037 0.00 0.00 0.00 3.18
2769 3876 6.681729 TCTCTTATCAGTTTTGGTGTAGGT 57.318 37.500 0.00 0.00 0.00 3.08
2770 3877 6.464222 TCTCTTATCAGTTTTGGTGTAGGTG 58.536 40.000 0.00 0.00 0.00 4.00
2771 3878 6.042781 TCTCTTATCAGTTTTGGTGTAGGTGT 59.957 38.462 0.00 0.00 0.00 4.16
2786 3893 6.183360 GGTGTAGGTGTAGGTAGTAGTGAATG 60.183 46.154 0.00 0.00 0.00 2.67
2789 3896 6.527057 AGGTGTAGGTAGTAGTGAATGAAC 57.473 41.667 0.00 0.00 0.00 3.18
3188 6479 4.718961 AGTAGACCAGTTGTTGCTTTGAT 58.281 39.130 0.00 0.00 0.00 2.57
3389 6763 3.866883 AATACCCATTTTGGCTTCACG 57.133 42.857 0.00 0.00 35.79 4.35
3475 6849 5.403558 TCATCTGGGAAGGTATAGACTCA 57.596 43.478 0.00 0.00 0.00 3.41
4103 7483 4.562425 TGGCGCGGGGATGGATTC 62.562 66.667 8.83 0.00 0.00 2.52
4202 7582 4.196971 AGCACAGTTCTAAAAACCGAACT 58.803 39.130 0.00 0.00 38.28 3.01
4446 7834 1.202770 ACAACTCTTTCCTTGGACGGG 60.203 52.381 0.00 0.00 0.00 5.28
4462 7850 6.658188 TGGACGGGAATTTAACAATTTCTT 57.342 33.333 0.00 0.00 32.35 2.52
4605 7993 1.267121 GGAGAGCACTGTGGGAACTA 58.733 55.000 10.21 0.00 0.00 2.24
4699 8087 9.515226 AATACATTAAGCACCTAAAGAAGTTCA 57.485 29.630 5.50 0.00 0.00 3.18
4737 8125 2.025887 GTCCCCACCACTGAAAGATGAT 60.026 50.000 0.00 0.00 37.43 2.45
5037 8425 9.575868 TGTTTTACTGTTTAATGTGGATTCCTA 57.424 29.630 3.95 0.00 0.00 2.94
5045 8433 7.777910 TGTTTAATGTGGATTCCTATTACAGGG 59.222 37.037 3.95 0.00 45.58 4.45
5055 8443 7.127339 GGATTCCTATTACAGGGCATATCCTTA 59.873 40.741 0.00 0.00 45.58 2.69
5441 8831 9.944376 ATAAGTTGTTGTATCATTACACTGTCT 57.056 29.630 0.00 0.00 38.05 3.41
5558 8948 4.862350 TGTCACTTGATTGCTTTGTCATG 58.138 39.130 0.00 0.00 0.00 3.07
5567 8957 2.585330 TGCTTTGTCATGGAGCTTGAA 58.415 42.857 10.88 0.00 37.32 2.69
5651 9041 6.214191 TGTTCTAGCTATCCTGTTTCTCTG 57.786 41.667 0.00 0.00 0.00 3.35
6143 9587 6.958193 GCTATCATAATTGAAGCTAACATCGC 59.042 38.462 0.00 0.00 35.21 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 7.741216 CGTTGGTGATAAAATTTGCAGAATTTG 59.259 33.333 15.56 2.31 30.94 2.32
19 20 7.571059 GCGTTGGTGATAAAATTTGCAGAATTT 60.571 33.333 11.43 11.43 0.00 1.82
20 21 6.128580 GCGTTGGTGATAAAATTTGCAGAATT 60.129 34.615 0.00 0.00 0.00 2.17
21 22 5.348451 GCGTTGGTGATAAAATTTGCAGAAT 59.652 36.000 0.00 0.00 0.00 2.40
22 23 4.683781 GCGTTGGTGATAAAATTTGCAGAA 59.316 37.500 0.00 0.00 0.00 3.02
23 24 4.233789 GCGTTGGTGATAAAATTTGCAGA 58.766 39.130 0.00 0.00 0.00 4.26
24 25 3.059306 CGCGTTGGTGATAAAATTTGCAG 59.941 43.478 0.00 0.00 0.00 4.41
25 26 2.983136 CGCGTTGGTGATAAAATTTGCA 59.017 40.909 0.00 0.00 0.00 4.08
26 27 2.222486 GCGCGTTGGTGATAAAATTTGC 60.222 45.455 8.43 0.00 0.00 3.68
27 28 2.026272 CGCGCGTTGGTGATAAAATTTG 59.974 45.455 24.19 0.00 0.00 2.32
28 29 2.246789 CGCGCGTTGGTGATAAAATTT 58.753 42.857 24.19 0.00 0.00 1.82
29 30 1.889891 CGCGCGTTGGTGATAAAATT 58.110 45.000 24.19 0.00 0.00 1.82
30 31 0.522495 GCGCGCGTTGGTGATAAAAT 60.522 50.000 32.35 0.00 0.00 1.82
31 32 1.154376 GCGCGCGTTGGTGATAAAA 60.154 52.632 32.35 0.00 0.00 1.52
32 33 2.476947 GCGCGCGTTGGTGATAAA 59.523 55.556 32.35 0.00 0.00 1.40
33 34 3.492545 GGCGCGCGTTGGTGATAA 61.493 61.111 32.35 0.00 0.00 1.75
34 35 4.743975 TGGCGCGCGTTGGTGATA 62.744 61.111 32.35 6.02 0.00 2.15
39 40 4.892379 CATGATGGCGCGCGTTGG 62.892 66.667 32.35 8.39 0.00 3.77
40 41 4.892379 CCATGATGGCGCGCGTTG 62.892 66.667 32.35 16.50 0.00 4.10
44 45 2.280119 TAGACCATGATGGCGCGC 60.280 61.111 25.94 25.94 42.67 6.86
45 46 0.530650 AACTAGACCATGATGGCGCG 60.531 55.000 12.25 0.00 42.67 6.86
46 47 1.221414 GAACTAGACCATGATGGCGC 58.779 55.000 12.25 0.00 42.67 6.53
47 48 2.602257 TGAACTAGACCATGATGGCG 57.398 50.000 12.25 0.18 42.67 5.69
48 49 3.609853 TGTTGAACTAGACCATGATGGC 58.390 45.455 12.25 4.53 42.67 4.40
49 50 9.159364 CATATATGTTGAACTAGACCATGATGG 57.841 37.037 10.53 10.53 45.02 3.51
50 51 9.716531 ACATATATGTTGAACTAGACCATGATG 57.283 33.333 12.75 0.00 37.90 3.07
51 52 9.935241 GACATATATGTTGAACTAGACCATGAT 57.065 33.333 19.19 0.00 41.95 2.45
52 53 8.082242 CGACATATATGTTGAACTAGACCATGA 58.918 37.037 23.71 0.00 43.40 3.07
53 54 7.867909 ACGACATATATGTTGAACTAGACCATG 59.132 37.037 31.38 0.00 43.40 3.66
54 55 7.952671 ACGACATATATGTTGAACTAGACCAT 58.047 34.615 31.38 9.21 43.40 3.55
55 56 7.342769 ACGACATATATGTTGAACTAGACCA 57.657 36.000 31.38 0.00 43.40 4.02
56 57 7.919091 TCAACGACATATATGTTGAACTAGACC 59.081 37.037 31.38 10.81 46.34 3.85
57 58 8.851960 TCAACGACATATATGTTGAACTAGAC 57.148 34.615 31.38 11.42 46.34 2.59
71 72 8.585018 TGGTCACTATTCATATCAACGACATAT 58.415 33.333 0.00 0.00 0.00 1.78
72 73 7.865889 GTGGTCACTATTCATATCAACGACATA 59.134 37.037 0.00 0.00 0.00 2.29
73 74 6.701841 GTGGTCACTATTCATATCAACGACAT 59.298 38.462 0.00 0.00 0.00 3.06
74 75 6.040247 GTGGTCACTATTCATATCAACGACA 58.960 40.000 0.00 0.00 0.00 4.35
75 76 6.273825 AGTGGTCACTATTCATATCAACGAC 58.726 40.000 1.24 0.00 40.43 4.34
76 77 6.465439 AGTGGTCACTATTCATATCAACGA 57.535 37.500 1.24 0.00 40.43 3.85
104 105 8.775527 GTCATATGTACACTTCTCGATCTAGAA 58.224 37.037 9.17 9.17 34.39 2.10
118 119 9.773328 TTACTTAACTACGTGTCATATGTACAC 57.227 33.333 19.88 19.88 43.04 2.90
187 190 7.212976 TGGTAGCTAAGATCTCATTTGTCATC 58.787 38.462 0.00 0.00 0.00 2.92
190 193 9.717942 ATATTGGTAGCTAAGATCTCATTTGTC 57.282 33.333 0.00 0.00 0.00 3.18
231 237 1.367840 GCCTATCGGTGGCGATTCT 59.632 57.895 0.00 0.00 41.03 2.40
253 259 6.746822 TGTAATTGAGTTTCTAATGCATTGCG 59.253 34.615 22.27 12.55 0.00 4.85
254 260 8.464770 TTGTAATTGAGTTTCTAATGCATTGC 57.535 30.769 22.27 0.46 0.00 3.56
336 343 6.762187 CCTACTCTATCTTCAACTACGTCAGA 59.238 42.308 0.00 0.00 0.00 3.27
338 345 6.647229 TCCTACTCTATCTTCAACTACGTCA 58.353 40.000 0.00 0.00 0.00 4.35
342 349 8.053026 TGTGTTCCTACTCTATCTTCAACTAC 57.947 38.462 0.00 0.00 0.00 2.73
344 351 7.726033 ATGTGTTCCTACTCTATCTTCAACT 57.274 36.000 0.00 0.00 0.00 3.16
368 375 1.133482 TGTCGAGATCCCATGAGGCTA 60.133 52.381 0.00 0.00 34.51 3.93
370 377 0.465705 TTGTCGAGATCCCATGAGGC 59.534 55.000 0.00 0.00 34.51 4.70
379 386 1.268640 GCGGGTCTAGTTGTCGAGATC 60.269 57.143 0.00 0.00 0.00 2.75
465 473 2.024871 CGTTCCTAGAGAGCGGCG 59.975 66.667 0.51 0.51 44.60 6.46
481 489 5.732849 TCTTGTGTTTTTCGTTGTTTTCG 57.267 34.783 0.00 0.00 0.00 3.46
482 490 7.846592 TGTTTTCTTGTGTTTTTCGTTGTTTTC 59.153 29.630 0.00 0.00 0.00 2.29
487 495 7.119997 TGTTTGTTTTCTTGTGTTTTTCGTTG 58.880 30.769 0.00 0.00 0.00 4.10
488 496 7.235430 TGTTTGTTTTCTTGTGTTTTTCGTT 57.765 28.000 0.00 0.00 0.00 3.85
517 525 5.682471 GCATGGACCTTATTTTCTCTCTCGA 60.682 44.000 0.00 0.00 0.00 4.04
648 657 4.202202 TGTGTTTGTGGCTAATTTGGAAGG 60.202 41.667 0.00 0.00 0.00 3.46
707 746 7.840931 AGTTATCATTAGGGCTTTGGAAAAAG 58.159 34.615 0.00 0.00 0.00 2.27
1326 1397 3.965694 ACTAACAGATGGGAGACGTACT 58.034 45.455 0.00 0.00 0.00 2.73
1375 1446 5.163933 CCGTAATCAAGCAAACTAACGCTAA 60.164 40.000 0.00 0.00 37.54 3.09
1385 1583 3.008157 TCCTACCACCGTAATCAAGCAAA 59.992 43.478 0.00 0.00 0.00 3.68
1403 1604 8.529476 GTCAAGTTCTACTAAATCCAGTTCCTA 58.471 37.037 0.00 0.00 0.00 2.94
1409 1610 6.402222 AGCAGTCAAGTTCTACTAAATCCAG 58.598 40.000 0.00 0.00 0.00 3.86
1446 1763 1.564348 ACGGAATAACAGAGGCCCAAT 59.436 47.619 0.00 0.00 0.00 3.16
1452 1790 5.865552 TCGACTTTTTACGGAATAACAGAGG 59.134 40.000 0.00 0.00 0.00 3.69
1454 1792 6.311935 CCATCGACTTTTTACGGAATAACAGA 59.688 38.462 0.00 0.00 0.00 3.41
1590 2160 1.523711 CACGGACATTCCCATCCCG 60.524 63.158 0.00 0.00 45.09 5.14
1592 2162 0.179045 CCTCACGGACATTCCCATCC 60.179 60.000 0.00 0.00 31.13 3.51
1593 2163 0.815615 GCCTCACGGACATTCCCATC 60.816 60.000 0.00 0.00 31.13 3.51
1594 2164 1.224592 GCCTCACGGACATTCCCAT 59.775 57.895 0.00 0.00 31.13 4.00
1605 2175 1.418342 CCGATAACAACGGCCTCACG 61.418 60.000 0.00 0.00 43.74 4.35
1649 2219 7.829725 TCAAATCAACCAATTATTGACCAGAG 58.170 34.615 6.50 0.00 38.84 3.35
1728 2298 3.498397 AGCACACTAACATCCAAACTTCG 59.502 43.478 0.00 0.00 0.00 3.79
1729 2299 4.275936 ACAGCACACTAACATCCAAACTTC 59.724 41.667 0.00 0.00 0.00 3.01
1813 2383 3.400505 TTACGTGCACAGATACGAGAG 57.599 47.619 18.64 0.00 42.54 3.20
1879 2450 7.931948 CCTTACCGACTGAATTATTGAAGGTAT 59.068 37.037 0.00 0.00 32.59 2.73
1898 2469 4.122776 CAATGGATCTTCAGTCCTTACCG 58.877 47.826 0.00 0.00 36.68 4.02
1927 2498 4.864704 AAAATGGCGACCAAACTACATT 57.135 36.364 2.68 0.00 36.95 2.71
2176 3283 5.009210 TGCAGGTACAACAGAAACAATAACC 59.991 40.000 0.00 0.00 0.00 2.85
2182 3289 5.590530 ATTTTGCAGGTACAACAGAAACA 57.409 34.783 0.00 0.00 0.00 2.83
2210 3317 3.889538 AGCTAAAACTTCTGGTCAAACCC 59.110 43.478 0.00 0.00 37.50 4.11
2245 3352 4.032558 CCTCACGTTTTAATAGACTTCGGC 59.967 45.833 0.00 0.00 0.00 5.54
2246 3353 4.032558 GCCTCACGTTTTAATAGACTTCGG 59.967 45.833 0.00 0.00 0.00 4.30
2247 3354 4.032558 GGCCTCACGTTTTAATAGACTTCG 59.967 45.833 0.00 0.00 0.00 3.79
2248 3355 4.933400 TGGCCTCACGTTTTAATAGACTTC 59.067 41.667 3.32 0.00 0.00 3.01
2249 3356 4.901868 TGGCCTCACGTTTTAATAGACTT 58.098 39.130 3.32 0.00 0.00 3.01
2250 3357 4.546829 TGGCCTCACGTTTTAATAGACT 57.453 40.909 3.32 0.00 0.00 3.24
2251 3358 5.353123 TCAATGGCCTCACGTTTTAATAGAC 59.647 40.000 3.32 0.00 0.00 2.59
2252 3359 5.492895 TCAATGGCCTCACGTTTTAATAGA 58.507 37.500 3.32 0.00 0.00 1.98
2253 3360 5.354234 ACTCAATGGCCTCACGTTTTAATAG 59.646 40.000 3.32 0.00 0.00 1.73
2254 3361 5.250200 ACTCAATGGCCTCACGTTTTAATA 58.750 37.500 3.32 0.00 0.00 0.98
2255 3362 4.079253 ACTCAATGGCCTCACGTTTTAAT 58.921 39.130 3.32 0.00 0.00 1.40
2260 3367 1.202758 TGAACTCAATGGCCTCACGTT 60.203 47.619 3.32 0.66 0.00 3.99
2261 3368 0.396435 TGAACTCAATGGCCTCACGT 59.604 50.000 3.32 0.00 0.00 4.49
2262 3369 0.798776 GTGAACTCAATGGCCTCACG 59.201 55.000 3.32 0.00 0.00 4.35
2263 3370 1.896220 TGTGAACTCAATGGCCTCAC 58.104 50.000 3.32 8.27 37.50 3.51
2264 3371 2.885135 ATGTGAACTCAATGGCCTCA 57.115 45.000 3.32 0.00 0.00 3.86
2265 3372 5.643379 TTAAATGTGAACTCAATGGCCTC 57.357 39.130 3.32 0.00 0.00 4.70
2266 3373 6.438425 AGAATTAAATGTGAACTCAATGGCCT 59.562 34.615 3.32 0.00 0.00 5.19
2267 3374 6.633856 AGAATTAAATGTGAACTCAATGGCC 58.366 36.000 0.00 0.00 0.00 5.36
2268 3375 7.063780 CCAAGAATTAAATGTGAACTCAATGGC 59.936 37.037 0.00 0.00 0.00 4.40
2269 3376 8.090214 ACCAAGAATTAAATGTGAACTCAATGG 58.910 33.333 0.00 0.00 0.00 3.16
2270 3377 9.480053 AACCAAGAATTAAATGTGAACTCAATG 57.520 29.630 0.00 0.00 0.00 2.82
2271 3378 9.696917 GAACCAAGAATTAAATGTGAACTCAAT 57.303 29.630 0.00 0.00 0.00 2.57
2272 3379 8.912988 AGAACCAAGAATTAAATGTGAACTCAA 58.087 29.630 0.00 0.00 0.00 3.02
2273 3380 8.463930 AGAACCAAGAATTAAATGTGAACTCA 57.536 30.769 0.00 0.00 0.00 3.41
2274 3381 9.399403 GAAGAACCAAGAATTAAATGTGAACTC 57.601 33.333 0.00 0.00 0.00 3.01
2666 3773 9.927081 AGTGGGAAGTCATTATTTTATCAAGAT 57.073 29.630 0.00 0.00 0.00 2.40
2667 3774 9.753674 AAGTGGGAAGTCATTATTTTATCAAGA 57.246 29.630 0.00 0.00 0.00 3.02
2668 3775 9.793252 CAAGTGGGAAGTCATTATTTTATCAAG 57.207 33.333 0.00 0.00 0.00 3.02
2669 3776 8.748412 CCAAGTGGGAAGTCATTATTTTATCAA 58.252 33.333 0.00 0.00 40.01 2.57
2670 3777 8.292444 CCAAGTGGGAAGTCATTATTTTATCA 57.708 34.615 0.00 0.00 40.01 2.15
2720 3827 7.329588 TCTAAACTTGGAACTGGAAAGAAAC 57.670 36.000 0.00 0.00 0.00 2.78
2722 3829 7.998964 AGAATCTAAACTTGGAACTGGAAAGAA 59.001 33.333 0.00 0.00 0.00 2.52
2724 3831 7.751768 AGAATCTAAACTTGGAACTGGAAAG 57.248 36.000 0.00 0.00 0.00 2.62
2725 3832 7.745620 GAGAATCTAAACTTGGAACTGGAAA 57.254 36.000 0.00 0.00 0.00 3.13
2746 3853 6.042781 ACACCTACACCAAAACTGATAAGAGA 59.957 38.462 0.00 0.00 0.00 3.10
2748 3855 6.182507 ACACCTACACCAAAACTGATAAGA 57.817 37.500 0.00 0.00 0.00 2.10
2749 3856 6.594159 CCTACACCTACACCAAAACTGATAAG 59.406 42.308 0.00 0.00 0.00 1.73
2751 3858 5.544948 ACCTACACCTACACCAAAACTGATA 59.455 40.000 0.00 0.00 0.00 2.15
2753 3860 3.712733 ACCTACACCTACACCAAAACTGA 59.287 43.478 0.00 0.00 0.00 3.41
2756 3863 5.219343 ACTACCTACACCTACACCAAAAC 57.781 43.478 0.00 0.00 0.00 2.43
2757 3864 6.015180 CACTACTACCTACACCTACACCAAAA 60.015 42.308 0.00 0.00 0.00 2.44
2758 3865 5.477984 CACTACTACCTACACCTACACCAAA 59.522 44.000 0.00 0.00 0.00 3.28
2759 3866 5.012239 CACTACTACCTACACCTACACCAA 58.988 45.833 0.00 0.00 0.00 3.67
2760 3867 4.289410 TCACTACTACCTACACCTACACCA 59.711 45.833 0.00 0.00 0.00 4.17
2761 3868 4.848357 TCACTACTACCTACACCTACACC 58.152 47.826 0.00 0.00 0.00 4.16
2762 3869 6.600822 TCATTCACTACTACCTACACCTACAC 59.399 42.308 0.00 0.00 0.00 2.90
2763 3870 6.724351 TCATTCACTACTACCTACACCTACA 58.276 40.000 0.00 0.00 0.00 2.74
2764 3871 7.479150 GTTCATTCACTACTACCTACACCTAC 58.521 42.308 0.00 0.00 0.00 3.18
2765 3872 6.317140 CGTTCATTCACTACTACCTACACCTA 59.683 42.308 0.00 0.00 0.00 3.08
2766 3873 5.125097 CGTTCATTCACTACTACCTACACCT 59.875 44.000 0.00 0.00 0.00 4.00
2767 3874 5.124457 TCGTTCATTCACTACTACCTACACC 59.876 44.000 0.00 0.00 0.00 4.16
2768 3875 6.187125 TCGTTCATTCACTACTACCTACAC 57.813 41.667 0.00 0.00 0.00 2.90
2769 3876 6.127814 CCTTCGTTCATTCACTACTACCTACA 60.128 42.308 0.00 0.00 0.00 2.74
2770 3877 6.094603 TCCTTCGTTCATTCACTACTACCTAC 59.905 42.308 0.00 0.00 0.00 3.18
2771 3878 6.182627 TCCTTCGTTCATTCACTACTACCTA 58.817 40.000 0.00 0.00 0.00 3.08
2786 3893 2.357952 ACCAACAAAAGCTCCTTCGTTC 59.642 45.455 0.00 0.00 0.00 3.95
2789 3896 2.095718 GCTACCAACAAAAGCTCCTTCG 60.096 50.000 0.00 0.00 33.40 3.79
3052 5594 6.708054 AGCTATAAGACAGATACAAATGGTGC 59.292 38.462 0.00 0.00 0.00 5.01
3083 5625 6.176183 CAGATGATAGAAAGGACAAACTGGT 58.824 40.000 0.00 0.00 0.00 4.00
3188 6479 1.298602 CATATTGTAGCTGCCACGCA 58.701 50.000 0.00 0.00 36.92 5.24
3288 6579 9.739276 AACTATCAACAGTATCAAATGGAAGAA 57.261 29.630 0.00 0.00 0.00 2.52
3289 6580 9.166173 CAACTATCAACAGTATCAAATGGAAGA 57.834 33.333 0.00 0.00 0.00 2.87
3510 6884 5.838521 TCTTAAAACAGAAAGCAAAGGGGAT 59.161 36.000 0.00 0.00 0.00 3.85
4103 7483 8.159344 AGATAATCAAATCTAAAAAGGGCTCG 57.841 34.615 0.00 0.00 34.40 5.03
4202 7582 2.364973 TGGCGGCTAGGGTCATCA 60.365 61.111 11.43 0.00 0.00 3.07
4462 7850 5.943349 TCTCTTCCCGAAACACCATAATA 57.057 39.130 0.00 0.00 0.00 0.98
4475 7863 1.550524 TGGAACAGTCATCTCTTCCCG 59.449 52.381 0.00 0.00 37.76 5.14
4527 7915 7.259882 CCTGCAGATGAAATAGTTTTAATGCA 58.740 34.615 17.39 0.00 0.00 3.96
4605 7993 4.851639 AGGCTCATACTTCACTTTGGAT 57.148 40.909 0.00 0.00 0.00 3.41
4699 8087 2.703007 GGGACTTCTCTATGGCTGTGAT 59.297 50.000 0.00 0.00 0.00 3.06
4737 8125 1.073923 GGGCCTGAACTTTCTGGAGAA 59.926 52.381 16.74 0.00 45.89 2.87
5037 8425 7.238514 AGACAAGATAAGGATATGCCCTGTAAT 59.761 37.037 0.00 0.00 36.49 1.89
5045 8433 8.082334 GTCAAGAAGACAAGATAAGGATATGC 57.918 38.462 0.00 0.00 46.77 3.14
5558 8948 5.860716 GTGATTCATTTCAAGTTCAAGCTCC 59.139 40.000 0.00 0.00 0.00 4.70
5567 8957 7.395206 TGAATGATCCAGTGATTCATTTCAAGT 59.605 33.333 16.68 0.58 33.13 3.16
5651 9041 7.664758 ACGGAGGGAGTATACATTGTATTAAC 58.335 38.462 14.23 7.91 0.00 2.01
5662 9052 0.592148 CTGCGACGGAGGGAGTATAC 59.408 60.000 8.71 0.00 0.00 1.47
5843 9233 7.336931 AGAGTAATAACCAGCCACAACAATTAG 59.663 37.037 0.00 0.00 0.00 1.73
6056 9446 9.166173 CAATTGTCTACAATGATCCTTAAGTCA 57.834 33.333 9.01 0.00 45.06 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.