Multiple sequence alignment - TraesCS7D01G386600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G386600 chr7D 100.000 8911 0 0 1 8911 500886774 500895684 0.000000e+00 16456.0
1 TraesCS7D01G386600 chr7D 89.492 2246 173 39 5734 7954 500823976 500826183 0.000000e+00 2782.0
2 TraesCS7D01G386600 chr7D 88.019 1469 117 33 2007 3435 500820533 500821982 0.000000e+00 1683.0
3 TraesCS7D01G386600 chr7D 86.552 1450 105 38 3971 5379 500822356 500823756 0.000000e+00 1515.0
4 TraesCS7D01G386600 chr7D 86.047 473 49 9 1437 1897 500819886 500820353 8.040000e-135 492.0
5 TraesCS7D01G386600 chr7D 92.282 298 23 0 3622 3919 500822058 500822355 2.970000e-114 424.0
6 TraesCS7D01G386600 chr7D 83.333 480 40 15 929 1381 500819188 500819654 3.000000e-109 407.0
7 TraesCS7D01G386600 chr7D 84.143 391 44 13 118 492 538352546 538352158 6.580000e-96 363.0
8 TraesCS7D01G386600 chr7D 80.620 387 56 10 118 493 563606314 563606692 1.890000e-71 281.0
9 TraesCS7D01G386600 chr7D 89.730 185 11 4 5428 5606 500823736 500823918 6.960000e-56 230.0
10 TraesCS7D01G386600 chr7B 93.951 4364 183 42 3971 8289 529671844 529676171 0.000000e+00 6521.0
11 TraesCS7D01G386600 chr7B 92.774 1813 82 22 1084 2866 529668992 529670785 0.000000e+00 2577.0
12 TraesCS7D01G386600 chr7B 95.708 466 20 0 2980 3445 529670798 529671263 0.000000e+00 750.0
13 TraesCS7D01G386600 chr7B 95.405 457 15 4 3471 3924 529671382 529671835 0.000000e+00 723.0
14 TraesCS7D01G386600 chr7B 89.910 555 35 5 8362 8905 529676170 529676714 0.000000e+00 695.0
15 TraesCS7D01G386600 chr7B 84.932 584 32 17 494 1051 529668442 529668995 2.830000e-149 540.0
16 TraesCS7D01G386600 chr7B 91.346 104 6 2 1 102 529668342 529668444 1.210000e-28 139.0
17 TraesCS7D01G386600 chr7A 93.802 4324 176 48 3971 8263 567377344 567381606 0.000000e+00 6416.0
18 TraesCS7D01G386600 chr7A 89.739 2183 164 27 5760 7918 567006854 567009000 0.000000e+00 2736.0
19 TraesCS7D01G386600 chr7A 89.916 1428 70 29 494 1887 567374111 567375498 0.000000e+00 1772.0
20 TraesCS7D01G386600 chr7A 88.131 1466 104 37 2007 3435 567003438 567004870 0.000000e+00 1679.0
21 TraesCS7D01G386600 chr7A 85.625 1433 130 39 3971 5379 567005244 567006624 0.000000e+00 1435.0
22 TraesCS7D01G386600 chr7A 93.340 961 47 4 2980 3924 567376375 567377334 0.000000e+00 1404.0
23 TraesCS7D01G386600 chr7A 90.311 867 52 8 2006 2866 567375522 567376362 0.000000e+00 1107.0
24 TraesCS7D01G386600 chr7A 89.815 432 24 8 8494 8905 567381604 567382035 3.660000e-148 536.0
25 TraesCS7D01G386600 chr7A 92.282 298 23 0 3622 3919 567004946 567005243 2.970000e-114 424.0
26 TraesCS7D01G386600 chr7A 83.368 475 56 18 1437 1896 567002792 567003258 1.380000e-112 418.0
27 TraesCS7D01G386600 chr7A 82.402 483 47 24 967 1423 567002117 567002587 3.900000e-103 387.0
28 TraesCS7D01G386600 chr7A 87.156 109 6 4 1 102 567374006 567374113 5.650000e-22 117.0
29 TraesCS7D01G386600 chrUn 89.531 2216 176 34 5734 7925 86625771 86627954 0.000000e+00 2756.0
30 TraesCS7D01G386600 chrUn 87.553 1414 101 42 2039 3435 86622414 86623769 0.000000e+00 1567.0
31 TraesCS7D01G386600 chrUn 85.734 1451 123 42 3971 5379 86624143 86625551 0.000000e+00 1456.0
32 TraesCS7D01G386600 chrUn 87.500 464 39 11 1437 1887 86621932 86622389 1.330000e-142 518.0
33 TraesCS7D01G386600 chrUn 90.184 326 29 2 3594 3919 86623820 86624142 1.070000e-113 422.0
34 TraesCS7D01G386600 chrUn 82.400 500 51 20 929 1406 86621133 86621617 1.390000e-107 401.0
35 TraesCS7D01G386600 chrUn 90.270 185 10 4 5428 5606 86625531 86625713 1.500000e-57 235.0
36 TraesCS7D01G386600 chr3B 83.805 389 47 13 118 492 42738801 42739187 1.100000e-93 355.0
37 TraesCS7D01G386600 chr3B 82.564 390 48 15 118 492 815466871 815467255 8.630000e-85 326.0
38 TraesCS7D01G386600 chr3B 81.481 162 30 0 7489 7650 395852531 395852370 5.610000e-27 134.0
39 TraesCS7D01G386600 chr6A 84.615 338 40 10 168 493 34032261 34031924 8.630000e-85 326.0
40 TraesCS7D01G386600 chr6D 84.091 352 39 9 155 492 163327947 163328295 3.100000e-84 324.0
41 TraesCS7D01G386600 chr1D 82.308 390 46 14 118 491 97311403 97311021 5.190000e-82 316.0
42 TraesCS7D01G386600 chr1D 82.188 393 47 16 118 496 469388616 469388233 5.190000e-82 316.0
43 TraesCS7D01G386600 chr5D 81.538 390 55 13 118 492 505367391 505367004 1.120000e-78 305.0
44 TraesCS7D01G386600 chr3D 83.801 321 42 10 118 434 12162142 12162456 6.760000e-76 296.0
45 TraesCS7D01G386600 chr3D 81.122 392 55 16 118 493 405540707 405540319 6.760000e-76 296.0
46 TraesCS7D01G386600 chr3D 79.126 206 39 4 7438 7641 323333822 323334025 1.210000e-28 139.0
47 TraesCS7D01G386600 chr4B 78.628 379 70 7 118 492 598412619 598412990 3.210000e-59 241.0
48 TraesCS7D01G386600 chr4B 88.158 76 4 4 3483 3558 291894474 291894404 1.590000e-12 86.1
49 TraesCS7D01G386600 chr2A 84.400 250 34 3 167 416 32534715 32534471 3.210000e-59 241.0
50 TraesCS7D01G386600 chr2A 84.946 93 13 1 3451 3543 761594418 761594327 9.530000e-15 93.5
51 TraesCS7D01G386600 chr2A 83.529 85 11 3 3463 3546 504339196 504339278 9.590000e-10 76.8
52 TraesCS7D01G386600 chr3A 81.481 162 30 0 7489 7650 399573945 399573784 5.610000e-27 134.0
53 TraesCS7D01G386600 chr2D 84.706 85 10 3 3463 3546 372929782 372929700 2.060000e-11 82.4
54 TraesCS7D01G386600 chr2D 83.333 84 13 1 3463 3546 139025580 139025498 9.590000e-10 76.8
55 TraesCS7D01G386600 chr2B 83.333 84 13 1 3463 3546 197682840 197682758 9.590000e-10 76.8
56 TraesCS7D01G386600 chr6B 87.719 57 6 1 3482 3538 544132269 544132214 2.080000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G386600 chr7D 500886774 500895684 8910 False 16456.000000 16456 100.000000 1 8911 1 chr7D.!!$F1 8910
1 TraesCS7D01G386600 chr7D 500819188 500826183 6995 False 1076.142857 2782 87.922143 929 7954 7 chr7D.!!$F3 7025
2 TraesCS7D01G386600 chr7B 529668342 529676714 8372 False 1706.428571 6521 92.003714 1 8905 7 chr7B.!!$F1 8904
3 TraesCS7D01G386600 chr7A 567374006 567382035 8029 False 1892.000000 6416 90.723333 1 8905 6 chr7A.!!$F2 8904
4 TraesCS7D01G386600 chr7A 567002117 567009000 6883 False 1179.833333 2736 86.924500 967 7918 6 chr7A.!!$F1 6951
5 TraesCS7D01G386600 chrUn 86621133 86627954 6821 False 1050.714286 2756 87.596000 929 7925 7 chrUn.!!$F1 6996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 0.041576 GCCGCGAAAACGAGAAAAGT 60.042 50.000 8.23 0.0 34.06 2.66 F
484 491 0.171231 GATTCTGGGAGCCAAAACGC 59.829 55.000 0.00 0.0 30.80 4.84 F
835 875 0.541063 TATATCCTCTCGCCCCGCAA 60.541 55.000 0.00 0.0 0.00 4.85 F
902 942 0.951040 GATTCGTGATCCCGGCCATC 60.951 60.000 2.24 0.0 0.00 3.51 F
961 1011 1.002087 GAACCTTGATCCGTCCACACT 59.998 52.381 0.00 0.0 0.00 3.55 F
962 1012 1.056660 ACCTTGATCCGTCCACACTT 58.943 50.000 0.00 0.0 0.00 3.16 F
963 1013 1.002087 ACCTTGATCCGTCCACACTTC 59.998 52.381 0.00 0.0 0.00 3.01 F
2406 2888 1.142060 TCCCAACACGACCTTCACATT 59.858 47.619 0.00 0.0 0.00 2.71 F
3972 4608 0.465824 ATCCATCTGCAGCTTGGCTC 60.466 55.000 23.51 0.0 36.40 4.70 F
4661 5335 0.109086 CGTGCTCAGTGGATTCGTCT 60.109 55.000 0.00 0.0 0.00 4.18 F
5299 5989 1.218047 CCGGCGAAACTCCTGATGA 59.782 57.895 9.30 0.0 0.00 2.92 F
6465 7206 0.469331 CCATCCATCAGCCCAGCATT 60.469 55.000 0.00 0.0 0.00 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 2172 2.045536 GGAGAGGGCAGGCACAAG 60.046 66.667 0.00 0.00 0.00 3.16 R
2400 2882 0.460109 CCGTCATCTCGGCAATGTGA 60.460 55.000 0.00 0.00 43.96 3.58 R
2682 3165 5.724370 TGTTGGATTCAGTACCTTGAGGATA 59.276 40.000 3.59 0.00 38.94 2.59 R
2885 3395 2.617276 CCAGGCATGACAATCAGACTGT 60.617 50.000 0.00 0.00 32.43 3.55 R
2931 3454 5.767665 TCCGATGTTCAAGAAATTTGGAAGA 59.232 36.000 0.00 0.00 0.00 2.87 R
2953 3476 5.848833 AAGAAATCTTGGCAATGAGATCC 57.151 39.130 0.00 0.00 34.38 3.36 R
2978 3503 7.851228 TCATGAGAAGTATATGTTGTGGTTCT 58.149 34.615 0.00 0.00 0.00 3.01 R
4041 4695 0.401356 TCACCAGAAGCTGCAATGGA 59.599 50.000 20.18 1.21 36.62 3.41 R
5382 6072 0.179026 GGCCGGGGGTTATCTCTTTC 60.179 60.000 2.18 0.00 0.00 2.62 R
6133 6865 0.389948 ATGTTTCCGACTCGAGTGCC 60.390 55.000 25.58 8.65 0.00 5.01 R
6764 7517 0.179108 GACCCGTTCGATTCCCTGAG 60.179 60.000 0.00 0.00 0.00 3.35 R
8342 9152 0.103208 CGGTCCTCTCACATGCCTAC 59.897 60.000 0.00 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.041663 CAGCCGCGAAAACGAGAAAA 60.042 50.000 8.23 0.00 34.06 2.29
30 31 0.041576 GCCGCGAAAACGAGAAAAGT 60.042 50.000 8.23 0.00 34.06 2.66
33 34 3.845662 GCCGCGAAAACGAGAAAAGTAAA 60.846 43.478 8.23 0.00 34.06 2.01
34 35 3.898361 CCGCGAAAACGAGAAAAGTAAAG 59.102 43.478 8.23 0.00 34.06 1.85
35 36 4.318263 CCGCGAAAACGAGAAAAGTAAAGA 60.318 41.667 8.23 0.00 34.06 2.52
37 38 5.138095 GCGAAAACGAGAAAAGTAAAGAGG 58.862 41.667 0.00 0.00 0.00 3.69
38 39 5.050567 GCGAAAACGAGAAAAGTAAAGAGGA 60.051 40.000 0.00 0.00 0.00 3.71
39 40 6.353302 CGAAAACGAGAAAAGTAAAGAGGAC 58.647 40.000 0.00 0.00 0.00 3.85
41 42 7.479897 AAAACGAGAAAAGTAAAGAGGACTC 57.520 36.000 0.00 0.00 0.00 3.36
42 43 5.786264 ACGAGAAAAGTAAAGAGGACTCA 57.214 39.130 1.75 0.00 0.00 3.41
43 44 5.774630 ACGAGAAAAGTAAAGAGGACTCAG 58.225 41.667 1.75 0.00 0.00 3.35
44 45 4.623595 CGAGAAAAGTAAAGAGGACTCAGC 59.376 45.833 1.75 0.00 0.00 4.26
85 92 2.235155 GTCTCCTTCCCTGTTTCCTCTC 59.765 54.545 0.00 0.00 0.00 3.20
106 113 4.621991 TCTGAGAAAAGAGAAGTTCACCG 58.378 43.478 5.50 0.00 0.00 4.94
107 114 4.341235 TCTGAGAAAAGAGAAGTTCACCGA 59.659 41.667 5.50 0.00 0.00 4.69
108 115 5.018539 TGAGAAAAGAGAAGTTCACCGAA 57.981 39.130 5.50 0.00 0.00 4.30
109 116 5.611374 TGAGAAAAGAGAAGTTCACCGAAT 58.389 37.500 5.50 0.00 0.00 3.34
110 117 6.755206 TGAGAAAAGAGAAGTTCACCGAATA 58.245 36.000 5.50 0.00 0.00 1.75
111 118 7.386851 TGAGAAAAGAGAAGTTCACCGAATAT 58.613 34.615 5.50 0.00 0.00 1.28
112 119 7.545965 TGAGAAAAGAGAAGTTCACCGAATATC 59.454 37.037 5.50 0.00 0.00 1.63
113 120 6.819146 AGAAAAGAGAAGTTCACCGAATATCC 59.181 38.462 5.50 0.00 0.00 2.59
114 121 5.677319 AAGAGAAGTTCACCGAATATCCA 57.323 39.130 5.50 0.00 0.00 3.41
115 122 5.677319 AGAGAAGTTCACCGAATATCCAA 57.323 39.130 5.50 0.00 0.00 3.53
116 123 6.240549 AGAGAAGTTCACCGAATATCCAAT 57.759 37.500 5.50 0.00 0.00 3.16
117 124 6.051717 AGAGAAGTTCACCGAATATCCAATG 58.948 40.000 5.50 0.00 0.00 2.82
118 125 5.126067 AGAAGTTCACCGAATATCCAATGG 58.874 41.667 5.50 0.00 0.00 3.16
119 126 3.214328 AGTTCACCGAATATCCAATGGC 58.786 45.455 0.00 0.00 0.00 4.40
120 127 3.117888 AGTTCACCGAATATCCAATGGCT 60.118 43.478 0.00 0.00 0.00 4.75
121 128 3.126001 TCACCGAATATCCAATGGCTC 57.874 47.619 0.00 0.00 0.00 4.70
122 129 2.437651 TCACCGAATATCCAATGGCTCA 59.562 45.455 0.00 0.00 0.00 4.26
123 130 3.072915 TCACCGAATATCCAATGGCTCAT 59.927 43.478 0.00 0.00 0.00 2.90
124 131 3.438087 CACCGAATATCCAATGGCTCATC 59.562 47.826 0.00 0.00 0.00 2.92
125 132 3.328931 ACCGAATATCCAATGGCTCATCT 59.671 43.478 0.00 0.00 0.00 2.90
126 133 3.688185 CCGAATATCCAATGGCTCATCTG 59.312 47.826 0.00 0.00 0.00 2.90
127 134 3.126514 CGAATATCCAATGGCTCATCTGC 59.873 47.826 0.00 0.00 0.00 4.26
128 135 3.801307 ATATCCAATGGCTCATCTGCA 57.199 42.857 0.00 0.00 34.04 4.41
129 136 1.688772 ATCCAATGGCTCATCTGCAC 58.311 50.000 0.00 0.00 34.04 4.57
130 137 0.622136 TCCAATGGCTCATCTGCACT 59.378 50.000 0.00 0.00 34.04 4.40
131 138 1.022735 CCAATGGCTCATCTGCACTC 58.977 55.000 0.00 0.00 34.04 3.51
132 139 0.656259 CAATGGCTCATCTGCACTCG 59.344 55.000 0.00 0.00 34.04 4.18
133 140 1.094073 AATGGCTCATCTGCACTCGC 61.094 55.000 0.00 0.00 39.24 5.03
134 141 1.969200 ATGGCTCATCTGCACTCGCT 61.969 55.000 0.00 0.00 39.64 4.93
135 142 1.449246 GGCTCATCTGCACTCGCTT 60.449 57.895 0.00 0.00 39.64 4.68
136 143 0.179100 GGCTCATCTGCACTCGCTTA 60.179 55.000 0.00 0.00 39.64 3.09
137 144 1.645034 GCTCATCTGCACTCGCTTAA 58.355 50.000 0.00 0.00 39.64 1.85
138 145 2.002586 GCTCATCTGCACTCGCTTAAA 58.997 47.619 0.00 0.00 39.64 1.52
139 146 2.416547 GCTCATCTGCACTCGCTTAAAA 59.583 45.455 0.00 0.00 39.64 1.52
140 147 3.120199 GCTCATCTGCACTCGCTTAAAAA 60.120 43.478 0.00 0.00 39.64 1.94
193 200 6.712179 AAATCCAAAAATTTTGTGCATGGT 57.288 29.167 16.15 4.19 0.00 3.55
194 201 7.814264 AAATCCAAAAATTTTGTGCATGGTA 57.186 28.000 16.15 6.07 0.00 3.25
195 202 7.437793 AATCCAAAAATTTTGTGCATGGTAG 57.562 32.000 16.15 0.00 0.00 3.18
196 203 6.166984 TCCAAAAATTTTGTGCATGGTAGA 57.833 33.333 16.15 1.80 0.00 2.59
197 204 6.767456 TCCAAAAATTTTGTGCATGGTAGAT 58.233 32.000 16.15 0.00 0.00 1.98
198 205 7.901029 TCCAAAAATTTTGTGCATGGTAGATA 58.099 30.769 16.15 0.00 0.00 1.98
199 206 8.370940 TCCAAAAATTTTGTGCATGGTAGATAA 58.629 29.630 16.15 0.00 0.00 1.75
200 207 9.165035 CCAAAAATTTTGTGCATGGTAGATAAT 57.835 29.630 16.15 0.00 0.00 1.28
204 211 8.721019 AATTTTGTGCATGGTAGATAATTTGG 57.279 30.769 0.00 0.00 0.00 3.28
205 212 6.849085 TTTGTGCATGGTAGATAATTTGGT 57.151 33.333 0.00 0.00 0.00 3.67
206 213 5.833406 TGTGCATGGTAGATAATTTGGTG 57.167 39.130 0.00 0.00 0.00 4.17
207 214 4.097741 TGTGCATGGTAGATAATTTGGTGC 59.902 41.667 0.00 0.00 0.00 5.01
208 215 3.314913 TGCATGGTAGATAATTTGGTGCG 59.685 43.478 0.00 0.00 33.07 5.34
209 216 3.315191 GCATGGTAGATAATTTGGTGCGT 59.685 43.478 0.00 0.00 0.00 5.24
210 217 4.789481 GCATGGTAGATAATTTGGTGCGTG 60.789 45.833 0.00 0.00 0.00 5.34
211 218 4.209307 TGGTAGATAATTTGGTGCGTGA 57.791 40.909 0.00 0.00 0.00 4.35
212 219 4.188462 TGGTAGATAATTTGGTGCGTGAG 58.812 43.478 0.00 0.00 0.00 3.51
213 220 4.081365 TGGTAGATAATTTGGTGCGTGAGA 60.081 41.667 0.00 0.00 0.00 3.27
214 221 5.057149 GGTAGATAATTTGGTGCGTGAGAT 58.943 41.667 0.00 0.00 0.00 2.75
215 222 6.183360 TGGTAGATAATTTGGTGCGTGAGATA 60.183 38.462 0.00 0.00 0.00 1.98
216 223 6.145696 GGTAGATAATTTGGTGCGTGAGATAC 59.854 42.308 0.00 0.00 0.00 2.24
228 235 4.183539 CGTGAGATACGCTCCAAATTTC 57.816 45.455 0.00 0.00 46.92 2.17
229 236 3.616821 CGTGAGATACGCTCCAAATTTCA 59.383 43.478 0.00 0.00 46.92 2.69
230 237 4.259970 CGTGAGATACGCTCCAAATTTCAG 60.260 45.833 0.00 0.00 46.92 3.02
231 238 4.870426 GTGAGATACGCTCCAAATTTCAGA 59.130 41.667 0.00 0.00 43.26 3.27
232 239 5.006165 GTGAGATACGCTCCAAATTTCAGAG 59.994 44.000 9.49 9.49 43.26 3.35
241 248 6.701432 CTCCAAATTTCAGAGCATTTGAAC 57.299 37.500 14.69 0.00 41.18 3.18
242 249 6.159299 TCCAAATTTCAGAGCATTTGAACA 57.841 33.333 14.69 1.62 41.18 3.18
243 250 6.761312 TCCAAATTTCAGAGCATTTGAACAT 58.239 32.000 14.69 0.00 41.18 2.71
244 251 7.218614 TCCAAATTTCAGAGCATTTGAACATT 58.781 30.769 14.69 4.19 41.18 2.71
245 252 7.716123 TCCAAATTTCAGAGCATTTGAACATTT 59.284 29.630 14.69 8.32 41.18 2.32
246 253 7.801315 CCAAATTTCAGAGCATTTGAACATTTG 59.199 33.333 14.69 20.30 41.18 2.32
247 254 8.552865 CAAATTTCAGAGCATTTGAACATTTGA 58.447 29.630 21.25 4.72 41.18 2.69
248 255 7.884816 ATTTCAGAGCATTTGAACATTTGAG 57.115 32.000 0.00 0.00 34.50 3.02
249 256 6.395426 TTCAGAGCATTTGAACATTTGAGT 57.605 33.333 0.00 0.00 30.03 3.41
250 257 7.509141 TTCAGAGCATTTGAACATTTGAGTA 57.491 32.000 0.00 0.00 30.03 2.59
251 258 7.137490 TCAGAGCATTTGAACATTTGAGTAG 57.863 36.000 0.00 0.00 0.00 2.57
252 259 5.798934 CAGAGCATTTGAACATTTGAGTAGC 59.201 40.000 0.00 0.00 0.00 3.58
253 260 5.709164 AGAGCATTTGAACATTTGAGTAGCT 59.291 36.000 0.00 0.00 0.00 3.32
254 261 5.947443 AGCATTTGAACATTTGAGTAGCTC 58.053 37.500 0.00 0.00 0.00 4.09
255 262 5.709164 AGCATTTGAACATTTGAGTAGCTCT 59.291 36.000 0.00 0.00 0.00 4.09
256 263 6.026513 GCATTTGAACATTTGAGTAGCTCTC 58.973 40.000 0.00 0.00 43.03 3.20
342 349 6.585695 TTTTACCGAGAACTACTCAGATGT 57.414 37.500 0.00 0.00 45.14 3.06
343 350 5.814764 TTACCGAGAACTACTCAGATGTC 57.185 43.478 0.00 0.00 45.14 3.06
344 351 3.018149 ACCGAGAACTACTCAGATGTCC 58.982 50.000 0.00 0.00 45.14 4.02
345 352 3.017442 CCGAGAACTACTCAGATGTCCA 58.983 50.000 0.00 0.00 45.14 4.02
346 353 3.444034 CCGAGAACTACTCAGATGTCCAA 59.556 47.826 0.00 0.00 45.14 3.53
347 354 4.082190 CCGAGAACTACTCAGATGTCCAAA 60.082 45.833 0.00 0.00 45.14 3.28
348 355 5.394663 CCGAGAACTACTCAGATGTCCAAAT 60.395 44.000 0.00 0.00 45.14 2.32
349 356 5.518128 CGAGAACTACTCAGATGTCCAAATG 59.482 44.000 0.00 0.00 45.14 2.32
350 357 6.611613 AGAACTACTCAGATGTCCAAATGA 57.388 37.500 0.00 0.00 0.00 2.57
351 358 7.192852 AGAACTACTCAGATGTCCAAATGAT 57.807 36.000 0.00 0.00 0.00 2.45
352 359 7.628234 AGAACTACTCAGATGTCCAAATGATT 58.372 34.615 0.00 0.00 0.00 2.57
353 360 8.105829 AGAACTACTCAGATGTCCAAATGATTT 58.894 33.333 0.00 0.00 0.00 2.17
354 361 7.621428 ACTACTCAGATGTCCAAATGATTTG 57.379 36.000 10.84 10.84 40.32 2.32
355 362 7.397221 ACTACTCAGATGTCCAAATGATTTGA 58.603 34.615 18.82 0.00 43.26 2.69
356 363 7.884877 ACTACTCAGATGTCCAAATGATTTGAA 59.115 33.333 18.82 0.00 43.26 2.69
357 364 7.528996 ACTCAGATGTCCAAATGATTTGAAA 57.471 32.000 18.82 4.37 43.26 2.69
358 365 8.130671 ACTCAGATGTCCAAATGATTTGAAAT 57.869 30.769 18.82 9.08 43.26 2.17
359 366 8.591072 ACTCAGATGTCCAAATGATTTGAAATT 58.409 29.630 18.82 1.83 43.26 1.82
360 367 9.431887 CTCAGATGTCCAAATGATTTGAAATTT 57.568 29.630 18.82 0.00 43.26 1.82
361 368 9.210329 TCAGATGTCCAAATGATTTGAAATTTG 57.790 29.630 18.82 13.07 43.26 2.32
362 369 9.210329 CAGATGTCCAAATGATTTGAAATTTGA 57.790 29.630 18.82 4.09 43.41 2.69
363 370 9.781633 AGATGTCCAAATGATTTGAAATTTGAA 57.218 25.926 18.82 0.00 43.41 2.69
365 372 7.863666 TGTCCAAATGATTTGAAATTTGAAGC 58.136 30.769 18.82 0.00 43.41 3.86
366 373 7.011189 GTCCAAATGATTTGAAATTTGAAGCG 58.989 34.615 18.82 0.00 43.41 4.68
367 374 6.927936 TCCAAATGATTTGAAATTTGAAGCGA 59.072 30.769 18.82 0.89 43.41 4.93
368 375 7.440556 TCCAAATGATTTGAAATTTGAAGCGAA 59.559 29.630 18.82 0.00 43.41 4.70
369 376 7.531534 CCAAATGATTTGAAATTTGAAGCGAAC 59.468 33.333 18.82 0.00 43.41 3.95
370 377 7.712264 AATGATTTGAAATTTGAAGCGAACA 57.288 28.000 0.00 0.00 0.00 3.18
371 378 7.894376 ATGATTTGAAATTTGAAGCGAACAT 57.106 28.000 0.00 0.00 0.00 2.71
372 379 7.337150 TGATTTGAAATTTGAAGCGAACATC 57.663 32.000 0.00 0.00 0.00 3.06
373 380 6.922407 TGATTTGAAATTTGAAGCGAACATCA 59.078 30.769 0.00 0.00 0.00 3.07
374 381 7.599621 TGATTTGAAATTTGAAGCGAACATCAT 59.400 29.630 0.00 0.00 0.00 2.45
375 382 8.984891 ATTTGAAATTTGAAGCGAACATCATA 57.015 26.923 0.00 0.00 0.00 2.15
376 383 7.795431 TTGAAATTTGAAGCGAACATCATAC 57.205 32.000 0.00 0.00 0.00 2.39
377 384 6.907741 TGAAATTTGAAGCGAACATCATACA 58.092 32.000 0.00 0.00 0.00 2.29
378 385 7.537715 TGAAATTTGAAGCGAACATCATACAT 58.462 30.769 0.00 0.00 0.00 2.29
379 386 7.697710 TGAAATTTGAAGCGAACATCATACATC 59.302 33.333 0.00 0.00 0.00 3.06
380 387 6.682423 ATTTGAAGCGAACATCATACATCA 57.318 33.333 0.00 0.00 0.00 3.07
381 388 6.493449 TTTGAAGCGAACATCATACATCAA 57.507 33.333 0.00 0.00 0.00 2.57
382 389 6.493449 TTGAAGCGAACATCATACATCAAA 57.507 33.333 0.00 0.00 0.00 2.69
383 390 6.682423 TGAAGCGAACATCATACATCAAAT 57.318 33.333 0.00 0.00 0.00 2.32
384 391 7.087409 TGAAGCGAACATCATACATCAAATT 57.913 32.000 0.00 0.00 0.00 1.82
385 392 8.207521 TGAAGCGAACATCATACATCAAATTA 57.792 30.769 0.00 0.00 0.00 1.40
386 393 8.839343 TGAAGCGAACATCATACATCAAATTAT 58.161 29.630 0.00 0.00 0.00 1.28
387 394 9.322776 GAAGCGAACATCATACATCAAATTATC 57.677 33.333 0.00 0.00 0.00 1.75
388 395 8.613060 AGCGAACATCATACATCAAATTATCT 57.387 30.769 0.00 0.00 0.00 1.98
389 396 9.710900 AGCGAACATCATACATCAAATTATCTA 57.289 29.630 0.00 0.00 0.00 1.98
397 404 9.962809 TCATACATCAAATTATCTATCATGCCA 57.037 29.630 0.00 0.00 0.00 4.92
462 469 4.907188 TTTTAATTGAGCGCAAATGCAG 57.093 36.364 11.47 0.00 42.21 4.41
463 470 3.846423 TTAATTGAGCGCAAATGCAGA 57.154 38.095 11.47 0.00 42.21 4.26
464 471 2.953466 AATTGAGCGCAAATGCAGAT 57.047 40.000 11.47 0.00 42.21 2.90
465 472 2.203800 ATTGAGCGCAAATGCAGATG 57.796 45.000 11.47 0.00 42.21 2.90
466 473 1.166989 TTGAGCGCAAATGCAGATGA 58.833 45.000 11.47 0.00 42.21 2.92
467 474 1.385528 TGAGCGCAAATGCAGATGAT 58.614 45.000 11.47 0.00 42.21 2.45
468 475 1.746787 TGAGCGCAAATGCAGATGATT 59.253 42.857 11.47 0.00 42.21 2.57
469 476 2.223409 TGAGCGCAAATGCAGATGATTC 60.223 45.455 11.47 0.00 42.21 2.52
470 477 2.022195 AGCGCAAATGCAGATGATTCT 58.978 42.857 11.47 0.00 42.21 2.40
479 486 2.723322 CAGATGATTCTGGGAGCCAA 57.277 50.000 0.00 0.00 44.78 4.52
480 487 3.008835 CAGATGATTCTGGGAGCCAAA 57.991 47.619 0.00 0.00 44.78 3.28
481 488 3.359033 CAGATGATTCTGGGAGCCAAAA 58.641 45.455 0.00 0.00 44.78 2.44
482 489 3.129988 CAGATGATTCTGGGAGCCAAAAC 59.870 47.826 0.00 0.00 44.78 2.43
483 490 1.533625 TGATTCTGGGAGCCAAAACG 58.466 50.000 0.00 0.00 30.80 3.60
484 491 0.171231 GATTCTGGGAGCCAAAACGC 59.829 55.000 0.00 0.00 30.80 4.84
485 492 1.250840 ATTCTGGGAGCCAAAACGCC 61.251 55.000 0.00 0.00 30.80 5.68
486 493 2.282462 CTGGGAGCCAAAACGCCT 60.282 61.111 0.00 0.00 30.80 5.52
487 494 2.282180 TGGGAGCCAAAACGCCTC 60.282 61.111 0.00 0.00 0.00 4.70
488 495 2.282180 GGGAGCCAAAACGCCTCA 60.282 61.111 0.00 0.00 0.00 3.86
489 496 2.626780 GGGAGCCAAAACGCCTCAC 61.627 63.158 0.00 0.00 0.00 3.51
490 497 1.600916 GGAGCCAAAACGCCTCACT 60.601 57.895 0.00 0.00 0.00 3.41
491 498 1.578206 GGAGCCAAAACGCCTCACTC 61.578 60.000 0.00 0.00 0.00 3.51
492 499 1.901650 GAGCCAAAACGCCTCACTCG 61.902 60.000 0.00 0.00 0.00 4.18
493 500 2.966309 GCCAAAACGCCTCACTCGG 61.966 63.158 0.00 0.00 0.00 4.63
505 512 4.265056 ACTCGGTTGGCACCCACC 62.265 66.667 0.82 0.00 40.52 4.61
534 541 4.022503 AGCAAGAGATCTCAAAAAGCAACC 60.023 41.667 24.39 0.00 0.00 3.77
551 558 2.363018 CTCGGCTGACCCAGAGGA 60.363 66.667 0.00 0.00 36.73 3.71
719 740 1.676678 TACCAGAGCGCAGGATCCAC 61.677 60.000 15.82 4.46 0.00 4.02
733 758 2.483329 ATCCACTGCACCCTCCTCCT 62.483 60.000 0.00 0.00 0.00 3.69
734 759 2.227036 CCACTGCACCCTCCTCCTT 61.227 63.158 0.00 0.00 0.00 3.36
737 762 0.768221 ACTGCACCCTCCTCCTTCAA 60.768 55.000 0.00 0.00 0.00 2.69
826 866 2.625790 CCAGCCCGCTATATATCCTCTC 59.374 54.545 0.00 0.00 0.00 3.20
835 875 0.541063 TATATCCTCTCGCCCCGCAA 60.541 55.000 0.00 0.00 0.00 4.85
836 876 2.100879 ATATCCTCTCGCCCCGCAAC 62.101 60.000 0.00 0.00 0.00 4.17
900 940 2.504032 GATTCGTGATCCCGGCCA 59.496 61.111 2.24 0.00 0.00 5.36
901 941 1.071471 GATTCGTGATCCCGGCCAT 59.929 57.895 2.24 0.00 0.00 4.40
902 942 0.951040 GATTCGTGATCCCGGCCATC 60.951 60.000 2.24 0.00 0.00 3.51
903 943 2.715532 ATTCGTGATCCCGGCCATCG 62.716 60.000 2.24 0.00 38.88 3.84
904 944 3.911698 CGTGATCCCGGCCATCGA 61.912 66.667 2.24 0.00 42.43 3.59
961 1011 1.002087 GAACCTTGATCCGTCCACACT 59.998 52.381 0.00 0.00 0.00 3.55
962 1012 1.056660 ACCTTGATCCGTCCACACTT 58.943 50.000 0.00 0.00 0.00 3.16
963 1013 1.002087 ACCTTGATCCGTCCACACTTC 59.998 52.381 0.00 0.00 0.00 3.01
964 1014 1.276421 CCTTGATCCGTCCACACTTCT 59.724 52.381 0.00 0.00 0.00 2.85
965 1015 2.289694 CCTTGATCCGTCCACACTTCTT 60.290 50.000 0.00 0.00 0.00 2.52
984 1039 1.372501 TTTCTTTCTGGGAGGAGGGG 58.627 55.000 0.00 0.00 0.00 4.79
1498 1886 6.492772 AGATTTTCTCTTGTCAATCCAAAGCT 59.507 34.615 0.00 0.00 0.00 3.74
1530 1928 7.186804 CCGTTATAGTTGGAAATTAAGCACAG 58.813 38.462 0.00 0.00 0.00 3.66
1712 2110 2.540265 ACTGACAAGAGTGCTGAAGG 57.460 50.000 0.00 0.00 0.00 3.46
1713 2111 2.042464 ACTGACAAGAGTGCTGAAGGA 58.958 47.619 0.00 0.00 0.00 3.36
1714 2112 2.435805 ACTGACAAGAGTGCTGAAGGAA 59.564 45.455 0.00 0.00 0.00 3.36
1715 2113 3.065655 CTGACAAGAGTGCTGAAGGAAG 58.934 50.000 0.00 0.00 0.00 3.46
1772 2172 1.888512 TCAAGCCTGACCATTTTCTGC 59.111 47.619 0.00 0.00 0.00 4.26
1784 2184 1.747325 TTTTCTGCTTGTGCCTGCCC 61.747 55.000 0.00 0.00 38.71 5.36
1815 2215 4.795278 CAGACATTAGCCAATTTTCTTCGC 59.205 41.667 0.00 0.00 0.00 4.70
1854 2254 2.418368 TACCCATCAACATCCTGCAC 57.582 50.000 0.00 0.00 0.00 4.57
1891 2291 2.858745 TCAAGCCAAAGAGGTAACACC 58.141 47.619 0.00 0.00 40.61 4.16
1988 2433 8.066612 ACCATATGTTTCAGGTGAAAAATAGG 57.933 34.615 16.72 16.22 43.53 2.57
1994 2439 8.934023 TGTTTCAGGTGAAAAATAGGAGTATT 57.066 30.769 6.72 0.00 44.58 1.89
2058 2531 2.787680 CACTCGTCGATTTCCCGTATTC 59.212 50.000 0.00 0.00 0.00 1.75
2114 2587 2.234661 TGATGGTCTGATGTCTGGTGTC 59.765 50.000 0.00 0.00 0.00 3.67
2115 2588 1.715785 TGGTCTGATGTCTGGTGTCA 58.284 50.000 0.00 0.00 0.00 3.58
2400 2882 4.766375 CTTACATATCCCAACACGACCTT 58.234 43.478 0.00 0.00 0.00 3.50
2406 2888 1.142060 TCCCAACACGACCTTCACATT 59.858 47.619 0.00 0.00 0.00 2.71
2673 3156 5.338056 GGGCGGTCAGGATACAAATATCATA 60.338 44.000 0.00 0.00 39.29 2.15
2730 3239 4.518970 ACAATACCTTGTTCTTCAATGCGT 59.481 37.500 0.00 0.00 43.05 5.24
2866 3376 3.490249 CGTGTCACAACTGGTAAGTCTGA 60.490 47.826 3.42 0.00 34.77 3.27
2902 3412 4.118410 CCTAGACAGTCTGATTGTCATGC 58.882 47.826 27.84 8.42 45.72 4.06
2906 3416 2.014857 CAGTCTGATTGTCATGCCTGG 58.985 52.381 0.00 0.00 0.00 4.45
2908 3431 2.012673 GTCTGATTGTCATGCCTGGAC 58.987 52.381 0.00 0.00 35.83 4.02
2916 3439 2.292267 GTCATGCCTGGACATTGTAGG 58.708 52.381 0.00 1.78 35.36 3.18
2926 3449 6.096846 GCCTGGACATTGTAGGACAAAAATAT 59.903 38.462 9.40 0.00 41.96 1.28
2927 3450 7.682021 GCCTGGACATTGTAGGACAAAAATATC 60.682 40.741 9.40 0.00 41.96 1.63
2928 3451 7.339212 CCTGGACATTGTAGGACAAAAATATCA 59.661 37.037 0.00 0.00 41.96 2.15
2929 3452 8.642935 TGGACATTGTAGGACAAAAATATCAA 57.357 30.769 0.00 0.00 41.96 2.57
2930 3453 8.739039 TGGACATTGTAGGACAAAAATATCAAG 58.261 33.333 0.00 0.00 41.96 3.02
2931 3454 8.739972 GGACATTGTAGGACAAAAATATCAAGT 58.260 33.333 0.00 0.00 41.96 3.16
2932 3455 9.774742 GACATTGTAGGACAAAAATATCAAGTC 57.225 33.333 0.00 0.00 41.96 3.01
2933 3456 9.520515 ACATTGTAGGACAAAAATATCAAGTCT 57.479 29.630 0.00 0.00 41.96 3.24
2953 3476 6.672147 AGTCTTCCAAATTTCTTGAACATCG 58.328 36.000 0.00 0.00 0.00 3.84
2954 3477 5.858581 GTCTTCCAAATTTCTTGAACATCGG 59.141 40.000 0.00 0.00 0.00 4.18
2955 3478 5.767665 TCTTCCAAATTTCTTGAACATCGGA 59.232 36.000 0.00 0.00 0.00 4.55
2956 3479 6.434028 TCTTCCAAATTTCTTGAACATCGGAT 59.566 34.615 0.00 0.00 0.00 4.18
2957 3480 6.194796 TCCAAATTTCTTGAACATCGGATC 57.805 37.500 0.00 0.00 0.00 3.36
2973 3496 3.879295 TCGGATCTCATTGCCAAGATTTC 59.121 43.478 0.00 0.00 32.43 2.17
3013 3538 9.664332 ACATATACTTCTCATGATTATTCTGCC 57.336 33.333 0.00 0.00 0.00 4.85
3034 3560 4.082895 GCCGTACACTATACGATCTCCATT 60.083 45.833 8.00 0.00 42.94 3.16
3070 3596 4.502282 CGTTGTCATAGCAGAATCTGAGAC 59.498 45.833 15.38 14.67 32.44 3.36
3097 3623 2.738587 TTTGCTGACCCTTGGTTACA 57.261 45.000 0.00 0.00 35.25 2.41
3099 3625 4.374689 TTTGCTGACCCTTGGTTACATA 57.625 40.909 0.00 0.00 35.25 2.29
3168 3694 3.781965 TCATGGATGAAATCTCCACTGGA 59.218 43.478 0.00 0.00 45.27 3.86
3473 4092 7.645340 CCGTACTATGTATACTTGGTGTTGTAC 59.355 40.741 15.36 6.55 0.00 2.90
3544 4163 9.490379 TTTGACTTAGGACAAATCTAGAACTTC 57.510 33.333 0.00 0.00 33.67 3.01
3553 4172 8.608317 GGACAAATCTAGAACTTCAGCTAATTC 58.392 37.037 0.00 0.00 0.00 2.17
3554 4173 9.155975 GACAAATCTAGAACTTCAGCTAATTCA 57.844 33.333 0.00 0.00 0.00 2.57
3716 4338 2.978010 AAGGAGTTTGCCCGTGCG 60.978 61.111 0.00 0.00 41.78 5.34
3931 4567 9.859427 TTTTCAGGTAAAGCTAATTGATTGATG 57.141 29.630 0.00 0.00 0.00 3.07
3932 4568 8.806429 TTCAGGTAAAGCTAATTGATTGATGA 57.194 30.769 0.00 0.00 0.00 2.92
3933 4569 8.213518 TCAGGTAAAGCTAATTGATTGATGAC 57.786 34.615 0.00 0.00 0.00 3.06
3934 4570 7.828717 TCAGGTAAAGCTAATTGATTGATGACA 59.171 33.333 0.00 0.00 0.00 3.58
3935 4571 8.127327 CAGGTAAAGCTAATTGATTGATGACAG 58.873 37.037 0.00 0.00 0.00 3.51
3936 4572 7.831193 AGGTAAAGCTAATTGATTGATGACAGT 59.169 33.333 0.00 0.00 0.00 3.55
3937 4573 9.109393 GGTAAAGCTAATTGATTGATGACAGTA 57.891 33.333 0.00 0.00 0.00 2.74
3941 4577 8.162878 AGCTAATTGATTGATGACAGTAATGG 57.837 34.615 0.00 0.00 0.00 3.16
3942 4578 7.230108 AGCTAATTGATTGATGACAGTAATGGG 59.770 37.037 0.00 0.00 0.00 4.00
3943 4579 7.229306 GCTAATTGATTGATGACAGTAATGGGA 59.771 37.037 0.00 0.00 0.00 4.37
3944 4580 6.949352 ATTGATTGATGACAGTAATGGGAC 57.051 37.500 0.00 0.00 0.00 4.46
3945 4581 5.698741 TGATTGATGACAGTAATGGGACT 57.301 39.130 0.00 0.00 0.00 3.85
3946 4582 6.806668 TGATTGATGACAGTAATGGGACTA 57.193 37.500 0.00 0.00 0.00 2.59
3947 4583 6.582636 TGATTGATGACAGTAATGGGACTAC 58.417 40.000 0.00 0.00 0.00 2.73
3948 4584 5.353394 TTGATGACAGTAATGGGACTACC 57.647 43.478 0.00 0.00 40.81 3.18
3949 4585 4.620723 TGATGACAGTAATGGGACTACCT 58.379 43.478 0.00 0.00 41.11 3.08
3950 4586 4.405680 TGATGACAGTAATGGGACTACCTG 59.594 45.833 0.00 0.00 41.11 4.00
3951 4587 4.055710 TGACAGTAATGGGACTACCTGA 57.944 45.455 0.00 0.00 41.11 3.86
3952 4588 4.620723 TGACAGTAATGGGACTACCTGAT 58.379 43.478 0.00 0.00 41.11 2.90
3953 4589 5.773091 TGACAGTAATGGGACTACCTGATA 58.227 41.667 0.00 0.00 41.11 2.15
3954 4590 6.382087 TGACAGTAATGGGACTACCTGATAT 58.618 40.000 0.00 0.00 41.11 1.63
3955 4591 6.493802 TGACAGTAATGGGACTACCTGATATC 59.506 42.308 0.00 0.00 41.11 1.63
3956 4592 5.780793 ACAGTAATGGGACTACCTGATATCC 59.219 44.000 0.00 0.00 41.11 2.59
3957 4593 5.780282 CAGTAATGGGACTACCTGATATCCA 59.220 44.000 0.00 0.00 41.11 3.41
3958 4594 6.441924 CAGTAATGGGACTACCTGATATCCAT 59.558 42.308 0.00 0.00 41.11 3.41
3959 4595 6.670027 AGTAATGGGACTACCTGATATCCATC 59.330 42.308 0.00 0.00 41.11 3.51
3960 4596 4.767000 TGGGACTACCTGATATCCATCT 57.233 45.455 0.00 0.00 41.11 2.90
3961 4597 4.420206 TGGGACTACCTGATATCCATCTG 58.580 47.826 0.00 0.00 41.11 2.90
3962 4598 3.196685 GGGACTACCTGATATCCATCTGC 59.803 52.174 0.00 0.00 35.85 4.26
3963 4599 3.834813 GGACTACCTGATATCCATCTGCA 59.165 47.826 0.00 0.00 31.93 4.41
3964 4600 4.081752 GGACTACCTGATATCCATCTGCAG 60.082 50.000 7.63 7.63 31.93 4.41
3965 4601 2.855209 ACCTGATATCCATCTGCAGC 57.145 50.000 9.47 0.00 31.93 5.25
3966 4602 2.336891 ACCTGATATCCATCTGCAGCT 58.663 47.619 9.47 0.00 31.93 4.24
3967 4603 2.709934 ACCTGATATCCATCTGCAGCTT 59.290 45.455 9.47 0.00 31.93 3.74
3968 4604 3.075148 CCTGATATCCATCTGCAGCTTG 58.925 50.000 9.47 9.15 31.93 4.01
3969 4605 3.075148 CTGATATCCATCTGCAGCTTGG 58.925 50.000 22.73 22.73 31.93 3.61
3970 4606 1.811359 GATATCCATCTGCAGCTTGGC 59.189 52.381 23.51 11.05 0.00 4.52
3971 4607 0.841961 TATCCATCTGCAGCTTGGCT 59.158 50.000 23.51 18.71 40.77 4.75
3972 4608 0.465824 ATCCATCTGCAGCTTGGCTC 60.466 55.000 23.51 0.00 36.40 4.70
3973 4609 2.119655 CCATCTGCAGCTTGGCTCC 61.120 63.158 18.82 0.00 36.40 4.70
3974 4610 1.077644 CATCTGCAGCTTGGCTCCT 60.078 57.895 9.47 0.00 36.40 3.69
4036 4690 7.062749 TGTGATGAACTAACAGAACTACCTT 57.937 36.000 0.00 0.00 0.00 3.50
4038 4692 7.152645 GTGATGAACTAACAGAACTACCTTGA 58.847 38.462 0.00 0.00 0.00 3.02
4039 4693 7.819900 GTGATGAACTAACAGAACTACCTTGAT 59.180 37.037 0.00 0.00 0.00 2.57
4040 4694 9.031537 TGATGAACTAACAGAACTACCTTGATA 57.968 33.333 0.00 0.00 0.00 2.15
4043 4697 8.475639 TGAACTAACAGAACTACCTTGATATCC 58.524 37.037 0.00 0.00 0.00 2.59
4044 4698 7.973048 ACTAACAGAACTACCTTGATATCCA 57.027 36.000 0.00 0.00 0.00 3.41
4045 4699 8.554490 ACTAACAGAACTACCTTGATATCCAT 57.446 34.615 0.00 0.00 0.00 3.41
4086 4740 5.297547 ACAGTAATCGTGATGACACTGTTT 58.702 37.500 14.70 0.00 46.39 2.83
4409 5063 2.656646 TGCTGTGGCAGACTACCG 59.343 61.111 0.00 0.00 44.28 4.02
4417 5071 1.972795 TGGCAGACTACCGGTTAAACT 59.027 47.619 15.04 4.83 0.00 2.66
4457 5131 6.713903 AGAACATGACAAGACAACTCATGATT 59.286 34.615 12.61 0.00 40.18 2.57
4474 5148 7.039313 TCATGATTCTACAAGTAGCACGTAT 57.961 36.000 2.37 0.00 33.32 3.06
4661 5335 0.109086 CGTGCTCAGTGGATTCGTCT 60.109 55.000 0.00 0.00 0.00 4.18
4777 5462 6.822667 TGCTTGTTTATGACAGATGATGTT 57.177 33.333 0.00 0.00 44.17 2.71
4798 5483 1.985622 AGAAATGGTGGATCTGGGGA 58.014 50.000 0.00 0.00 0.00 4.81
4861 5546 2.224354 TGTAAACGAGTTCCTTGGGGAC 60.224 50.000 0.00 0.00 42.05 4.46
4913 5599 2.923605 TTCCACCGTGACAACAAAAC 57.076 45.000 0.00 0.00 0.00 2.43
4932 5618 6.374333 ACAAAACTATTGGTCGCTGACATAAT 59.626 34.615 10.14 11.06 33.68 1.28
5052 5738 6.418057 TTTTTCACTGAGGCAAAATGGTAT 57.582 33.333 0.00 0.00 0.00 2.73
5160 5850 7.396540 TCCAAAGCTTCTAGAATGGAATTTC 57.603 36.000 18.94 0.00 36.07 2.17
5299 5989 1.218047 CCGGCGAAACTCCTGATGA 59.782 57.895 9.30 0.00 0.00 2.92
5610 6310 2.180204 CCTGCGGTAATGCCCTTCG 61.180 63.158 0.00 0.00 0.00 3.79
5650 6351 3.565307 TCAATGGTTCTAATGGCATCCC 58.435 45.455 0.00 0.00 0.00 3.85
5651 6352 2.629617 CAATGGTTCTAATGGCATCCCC 59.370 50.000 0.00 0.00 0.00 4.81
5671 6372 7.451731 TCCCCATCATTAGAACTTAATCTGT 57.548 36.000 0.00 0.00 0.00 3.41
5689 6390 3.561310 TCTGTGCACTGAAACTCAATCAC 59.439 43.478 22.45 0.00 0.00 3.06
5732 6434 7.985476 TGAGTTCTAAAACTTTCAGTTTCCAG 58.015 34.615 2.42 4.12 46.78 3.86
5736 6468 8.568794 GTTCTAAAACTTTCAGTTTCCAGCTAT 58.431 33.333 2.42 0.00 46.78 2.97
5916 6648 1.303561 GGATGTGTTGGCTGGCAGA 60.304 57.895 20.86 0.00 0.00 4.26
5955 6687 2.762887 TGAAGGCGACATCTCAATCTCT 59.237 45.455 0.00 0.00 0.00 3.10
6132 6864 4.278919 TGTATATATGCGTCCTTGTTCCGA 59.721 41.667 0.00 0.00 0.00 4.55
6133 6865 2.225068 ATATGCGTCCTTGTTCCGAG 57.775 50.000 0.00 0.00 0.00 4.63
6135 6867 3.119096 GCGTCCTTGTTCCGAGGC 61.119 66.667 0.00 0.00 35.08 4.70
6136 6868 2.342279 CGTCCTTGTTCCGAGGCA 59.658 61.111 0.00 0.00 35.08 4.75
6171 6912 7.041098 GGAAACATTACACTTGTTCTGATCTGT 60.041 37.037 0.00 0.00 36.32 3.41
6188 6929 6.115446 TGATCTGTACAACTCCATTTCATCC 58.885 40.000 0.00 0.00 0.00 3.51
6189 6930 5.497464 TCTGTACAACTCCATTTCATCCA 57.503 39.130 0.00 0.00 0.00 3.41
6453 7194 2.297033 GACAGTTGTTTGCACCATCCAT 59.703 45.455 0.00 0.00 0.00 3.41
6459 7200 0.971959 TTTGCACCATCCATCAGCCC 60.972 55.000 0.00 0.00 0.00 5.19
6465 7206 0.469331 CCATCCATCAGCCCAGCATT 60.469 55.000 0.00 0.00 0.00 3.56
6500 7241 7.964604 AAGCCTTCGATGAGGTAATTATAAC 57.035 36.000 5.09 0.00 39.11 1.89
6541 7282 7.916450 ACTTTTTCATGCATGTTTCCAAAATTG 59.084 29.630 25.43 18.64 0.00 2.32
6602 7355 1.840635 GGGGAGGAGATATATGTGGGC 59.159 57.143 0.00 0.00 0.00 5.36
6668 7421 7.685532 GGTAACTTTGCTTTCTCTGAAAAAG 57.314 36.000 0.00 0.00 36.91 2.27
6669 7422 6.697455 GGTAACTTTGCTTTCTCTGAAAAAGG 59.303 38.462 5.68 0.00 34.88 3.11
6670 7423 4.686972 ACTTTGCTTTCTCTGAAAAAGGC 58.313 39.130 5.68 3.24 34.88 4.35
6671 7424 4.403752 ACTTTGCTTTCTCTGAAAAAGGCT 59.596 37.500 5.68 0.00 34.88 4.58
6672 7425 5.105187 ACTTTGCTTTCTCTGAAAAAGGCTT 60.105 36.000 5.68 0.00 34.88 4.35
6673 7426 4.311816 TGCTTTCTCTGAAAAAGGCTTG 57.688 40.909 0.00 0.00 34.88 4.01
6681 7434 6.302269 TCTCTGAAAAAGGCTTGATCTTTCT 58.698 36.000 18.05 0.00 33.80 2.52
6711 7464 8.817092 TTCCTCCTTTTCAAGTTCTTTTTAGA 57.183 30.769 0.00 0.00 0.00 2.10
6750 7503 7.446931 TGGCTTTGAGTGATAGTAACAATTTGA 59.553 33.333 2.79 0.00 0.00 2.69
6798 7551 1.611673 CGGGTCAGCAAGATCAAACCT 60.612 52.381 0.00 0.00 0.00 3.50
6834 7587 1.421268 ACTTGGATGCTGGAAGTGACA 59.579 47.619 0.00 0.00 35.30 3.58
6864 7617 5.238583 GCACAAGAAGACATACTAGGTGTT 58.761 41.667 4.76 0.00 0.00 3.32
6915 7671 7.233962 TCAGACCTGTACCAGTAAGTCATTAAA 59.766 37.037 0.00 0.00 0.00 1.52
6983 7755 9.772973 GACTGACAAACAATATATGGTATGGTA 57.227 33.333 0.00 0.00 0.00 3.25
7022 7794 1.683385 CAGAGCGTGATCAGGGACATA 59.317 52.381 16.66 0.00 0.00 2.29
7370 8142 4.944372 GCGGCCGGGATGTACTCG 62.944 72.222 29.38 0.00 42.84 4.18
7803 8575 2.857152 CTCAAGAGCTTCTTCGGATTCG 59.143 50.000 0.00 0.00 33.78 3.34
8035 8810 2.398498 GAGTACATATGTGCTCGGCAG 58.602 52.381 30.11 0.00 45.16 4.85
8135 8917 6.197981 TGCACATGTATACATAAACATTGCG 58.802 36.000 17.86 5.42 39.83 4.85
8224 9034 3.127030 GGGTGAATTCGATGAACCAGAAC 59.873 47.826 12.50 0.00 32.28 3.01
8251 9061 1.004745 TGAGTGGCTCTCATTTTCCCC 59.995 52.381 14.83 0.00 46.77 4.81
8252 9062 1.283321 GAGTGGCTCTCATTTTCCCCT 59.717 52.381 11.49 0.00 42.34 4.79
8264 9074 6.100424 TCTCATTTTCCCCTTCCTCTTCTATC 59.900 42.308 0.00 0.00 0.00 2.08
8269 9079 3.116939 TCCCCTTCCTCTTCTATCTCCAG 60.117 52.174 0.00 0.00 0.00 3.86
8273 9083 3.237268 TCCTCTTCTATCTCCAGCCTC 57.763 52.381 0.00 0.00 0.00 4.70
8289 9099 2.973899 TCTCCGTTGAGAGCTGCC 59.026 61.111 0.00 0.00 42.73 4.85
8290 9100 1.607756 TCTCCGTTGAGAGCTGCCT 60.608 57.895 0.00 0.00 42.73 4.75
8291 9101 1.447489 CTCCGTTGAGAGCTGCCTG 60.447 63.158 0.00 0.00 41.42 4.85
8292 9102 2.164865 CTCCGTTGAGAGCTGCCTGT 62.165 60.000 0.00 0.00 41.42 4.00
8293 9103 2.031516 CCGTTGAGAGCTGCCTGTG 61.032 63.158 0.00 0.00 0.00 3.66
8294 9104 2.031516 CGTTGAGAGCTGCCTGTGG 61.032 63.158 0.00 0.00 0.00 4.17
8319 9129 4.432741 GCTTGTGCCCCCTCCCTC 62.433 72.222 0.00 0.00 0.00 4.30
8320 9130 2.612115 CTTGTGCCCCCTCCCTCT 60.612 66.667 0.00 0.00 0.00 3.69
8321 9131 2.610859 TTGTGCCCCCTCCCTCTC 60.611 66.667 0.00 0.00 0.00 3.20
8322 9132 4.741239 TGTGCCCCCTCCCTCTCC 62.741 72.222 0.00 0.00 0.00 3.71
8356 9166 2.886862 CCAGAGTAGGCATGTGAGAG 57.113 55.000 0.00 0.00 0.00 3.20
8357 9167 1.411977 CCAGAGTAGGCATGTGAGAGG 59.588 57.143 0.00 0.00 0.00 3.69
8358 9168 2.382882 CAGAGTAGGCATGTGAGAGGA 58.617 52.381 0.00 0.00 0.00 3.71
8359 9169 2.100584 CAGAGTAGGCATGTGAGAGGAC 59.899 54.545 0.00 0.00 0.00 3.85
8360 9170 1.410882 GAGTAGGCATGTGAGAGGACC 59.589 57.143 0.00 0.00 0.00 4.46
8394 9204 8.857098 GGTCATGTACATAATAGAACTAGTCCA 58.143 37.037 8.32 0.00 0.00 4.02
8405 9215 4.436079 AGAACTAGTCCAGGGTTTACCAT 58.564 43.478 0.00 0.00 43.89 3.55
8410 9220 1.493446 GTCCAGGGTTTACCATAGGGG 59.507 57.143 0.00 0.00 43.89 4.79
8462 9272 1.703411 CTGGGGCCAAACTTTTCTCA 58.297 50.000 4.39 0.00 0.00 3.27
8468 9278 1.541588 GCCAAACTTTTCTCAGGCGAT 59.458 47.619 0.00 0.00 31.88 4.58
8473 9283 4.487714 AACTTTTCTCAGGCGATATGGA 57.512 40.909 0.00 0.00 0.00 3.41
8482 9292 6.411376 TCTCAGGCGATATGGAAAAACTTTA 58.589 36.000 0.00 0.00 0.00 1.85
8569 9379 6.060788 AGAAAATAAAGCCCAATTGCACAAA 58.939 32.000 0.00 0.00 0.00 2.83
8571 9381 1.580815 AAAGCCCAATTGCACAAACG 58.419 45.000 0.00 0.00 0.00 3.60
8600 9412 8.442384 GTGGAATTTAAACACAATGCTTAATGG 58.558 33.333 0.00 0.00 35.30 3.16
8646 9460 4.647424 ACAACATGGGTACAAAAGTGTG 57.353 40.909 0.00 0.00 38.82 3.82
8754 9584 9.321562 AGAAATGGAATTGATATGAAAATGCAC 57.678 29.630 0.00 0.00 36.10 4.57
8772 9602 3.194329 TGCACCAATTGAGTTCAACACAA 59.806 39.130 7.12 2.67 38.86 3.33
8774 9604 3.798337 CACCAATTGAGTTCAACACAAGC 59.202 43.478 7.12 0.00 38.86 4.01
8777 9607 5.536161 ACCAATTGAGTTCAACACAAGCTAT 59.464 36.000 7.12 0.00 38.86 2.97
8778 9608 6.040842 ACCAATTGAGTTCAACACAAGCTATT 59.959 34.615 7.12 0.00 38.86 1.73
8808 9638 8.306038 CAATTCAATTTCAGTTCAATCTGGGTA 58.694 33.333 0.00 0.00 36.25 3.69
8843 9673 1.770110 TGTTGGGGACTGGAGTGCT 60.770 57.895 0.00 0.00 36.56 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.014012 AGAAACTAGCTGAGTCCTCTTTACT 58.986 40.000 0.00 0.00 37.44 2.24
30 31 7.403671 TCTAGAAACTAGCTGAGTCCTCTTTA 58.596 38.462 0.00 0.00 37.44 1.85
33 34 5.444744 TCTAGAAACTAGCTGAGTCCTCT 57.555 43.478 0.00 5.13 37.44 3.69
34 35 5.448089 CGTTCTAGAAACTAGCTGAGTCCTC 60.448 48.000 6.78 0.00 37.44 3.71
35 36 4.396790 CGTTCTAGAAACTAGCTGAGTCCT 59.603 45.833 6.78 0.88 37.44 3.85
37 38 5.122711 AGACGTTCTAGAAACTAGCTGAGTC 59.877 44.000 6.78 6.10 37.44 3.36
38 39 5.005094 AGACGTTCTAGAAACTAGCTGAGT 58.995 41.667 6.78 0.00 41.56 3.41
39 40 5.122554 TGAGACGTTCTAGAAACTAGCTGAG 59.877 44.000 6.78 0.00 0.00 3.35
41 42 5.106475 ACTGAGACGTTCTAGAAACTAGCTG 60.106 44.000 6.78 4.38 0.00 4.24
42 43 5.005094 ACTGAGACGTTCTAGAAACTAGCT 58.995 41.667 6.78 0.77 0.00 3.32
43 44 5.122711 AGACTGAGACGTTCTAGAAACTAGC 59.877 44.000 6.78 0.00 0.00 3.42
44 45 6.183360 GGAGACTGAGACGTTCTAGAAACTAG 60.183 46.154 6.78 2.11 0.00 2.57
85 92 4.621991 TCGGTGAACTTCTCTTTTCTCAG 58.378 43.478 0.00 0.00 0.00 3.35
100 107 3.118075 TGAGCCATTGGATATTCGGTGAA 60.118 43.478 6.95 0.00 0.00 3.18
101 108 2.437651 TGAGCCATTGGATATTCGGTGA 59.562 45.455 6.95 0.00 0.00 4.02
102 109 2.849942 TGAGCCATTGGATATTCGGTG 58.150 47.619 6.95 0.00 0.00 4.94
103 110 3.328931 AGATGAGCCATTGGATATTCGGT 59.671 43.478 6.95 0.00 0.00 4.69
104 111 3.688185 CAGATGAGCCATTGGATATTCGG 59.312 47.826 6.95 0.00 0.00 4.30
105 112 3.126514 GCAGATGAGCCATTGGATATTCG 59.873 47.826 6.95 0.00 0.00 3.34
106 113 4.077108 TGCAGATGAGCCATTGGATATTC 58.923 43.478 6.95 0.54 0.00 1.75
107 114 3.825014 GTGCAGATGAGCCATTGGATATT 59.175 43.478 6.95 0.00 0.00 1.28
108 115 3.074094 AGTGCAGATGAGCCATTGGATAT 59.926 43.478 6.95 0.00 0.00 1.63
109 116 2.440627 AGTGCAGATGAGCCATTGGATA 59.559 45.455 6.95 0.00 0.00 2.59
110 117 1.214673 AGTGCAGATGAGCCATTGGAT 59.785 47.619 6.95 0.00 0.00 3.41
111 118 0.622136 AGTGCAGATGAGCCATTGGA 59.378 50.000 6.95 0.00 0.00 3.53
112 119 1.022735 GAGTGCAGATGAGCCATTGG 58.977 55.000 0.00 0.00 0.00 3.16
113 120 0.656259 CGAGTGCAGATGAGCCATTG 59.344 55.000 0.00 0.00 0.00 2.82
114 121 1.094073 GCGAGTGCAGATGAGCCATT 61.094 55.000 0.00 0.00 42.15 3.16
115 122 1.523258 GCGAGTGCAGATGAGCCAT 60.523 57.895 0.00 0.00 42.15 4.40
116 123 2.125391 GCGAGTGCAGATGAGCCA 60.125 61.111 0.00 0.00 42.15 4.75
117 124 0.179100 TAAGCGAGTGCAGATGAGCC 60.179 55.000 0.00 0.00 46.23 4.70
118 125 1.645034 TTAAGCGAGTGCAGATGAGC 58.355 50.000 0.00 0.00 46.23 4.26
119 126 4.668576 TTTTTAAGCGAGTGCAGATGAG 57.331 40.909 0.00 0.00 46.23 2.90
168 175 7.554211 ACCATGCACAAAATTTTTGGATTTTT 58.446 26.923 22.27 1.53 37.17 1.94
169 176 7.110043 ACCATGCACAAAATTTTTGGATTTT 57.890 28.000 22.27 0.00 39.21 1.82
170 177 6.712179 ACCATGCACAAAATTTTTGGATTT 57.288 29.167 22.27 8.24 0.00 2.17
171 178 7.222872 TCTACCATGCACAAAATTTTTGGATT 58.777 30.769 22.27 9.65 0.00 3.01
172 179 6.767456 TCTACCATGCACAAAATTTTTGGAT 58.233 32.000 22.27 15.63 0.00 3.41
173 180 6.166984 TCTACCATGCACAAAATTTTTGGA 57.833 33.333 22.27 14.40 0.00 3.53
174 181 8.545229 TTATCTACCATGCACAAAATTTTTGG 57.455 30.769 22.27 14.37 0.00 3.28
178 185 9.165035 CCAAATTATCTACCATGCACAAAATTT 57.835 29.630 0.00 0.00 0.00 1.82
179 186 8.320617 ACCAAATTATCTACCATGCACAAAATT 58.679 29.630 0.00 0.00 0.00 1.82
180 187 7.765360 CACCAAATTATCTACCATGCACAAAAT 59.235 33.333 0.00 0.00 0.00 1.82
181 188 7.095910 CACCAAATTATCTACCATGCACAAAA 58.904 34.615 0.00 0.00 0.00 2.44
182 189 6.629128 CACCAAATTATCTACCATGCACAAA 58.371 36.000 0.00 0.00 0.00 2.83
183 190 5.394005 GCACCAAATTATCTACCATGCACAA 60.394 40.000 0.00 0.00 0.00 3.33
184 191 4.097741 GCACCAAATTATCTACCATGCACA 59.902 41.667 0.00 0.00 0.00 4.57
185 192 4.610945 GCACCAAATTATCTACCATGCAC 58.389 43.478 0.00 0.00 0.00 4.57
186 193 3.314913 CGCACCAAATTATCTACCATGCA 59.685 43.478 0.00 0.00 0.00 3.96
187 194 3.315191 ACGCACCAAATTATCTACCATGC 59.685 43.478 0.00 0.00 0.00 4.06
188 195 4.574421 TCACGCACCAAATTATCTACCATG 59.426 41.667 0.00 0.00 0.00 3.66
189 196 4.776349 TCACGCACCAAATTATCTACCAT 58.224 39.130 0.00 0.00 0.00 3.55
190 197 4.081365 TCTCACGCACCAAATTATCTACCA 60.081 41.667 0.00 0.00 0.00 3.25
191 198 4.439057 TCTCACGCACCAAATTATCTACC 58.561 43.478 0.00 0.00 0.00 3.18
192 199 6.129168 CGTATCTCACGCACCAAATTATCTAC 60.129 42.308 0.00 0.00 45.03 2.59
193 200 5.918576 CGTATCTCACGCACCAAATTATCTA 59.081 40.000 0.00 0.00 45.03 1.98
194 201 4.745125 CGTATCTCACGCACCAAATTATCT 59.255 41.667 0.00 0.00 45.03 1.98
195 202 5.006649 CGTATCTCACGCACCAAATTATC 57.993 43.478 0.00 0.00 45.03 1.75
208 215 4.870426 TCTGAAATTTGGAGCGTATCTCAC 59.130 41.667 0.00 0.00 43.70 3.51
209 216 5.084818 TCTGAAATTTGGAGCGTATCTCA 57.915 39.130 0.00 0.00 43.70 3.27
210 217 4.025313 GCTCTGAAATTTGGAGCGTATCTC 60.025 45.833 19.96 0.00 42.03 2.75
211 218 3.873952 GCTCTGAAATTTGGAGCGTATCT 59.126 43.478 19.96 0.00 42.03 1.98
212 219 4.202578 GCTCTGAAATTTGGAGCGTATC 57.797 45.455 19.96 3.32 42.03 2.24
218 225 6.218019 TGTTCAAATGCTCTGAAATTTGGAG 58.782 36.000 18.18 4.49 41.83 3.86
219 226 6.159299 TGTTCAAATGCTCTGAAATTTGGA 57.841 33.333 18.18 11.53 41.83 3.53
220 227 7.429636 AATGTTCAAATGCTCTGAAATTTGG 57.570 32.000 18.18 6.91 41.83 3.28
221 228 8.552865 TCAAATGTTCAAATGCTCTGAAATTTG 58.447 29.630 14.70 14.70 42.53 2.32
222 229 8.665643 TCAAATGTTCAAATGCTCTGAAATTT 57.334 26.923 0.00 0.00 34.68 1.82
223 230 7.929785 ACTCAAATGTTCAAATGCTCTGAAATT 59.070 29.630 0.00 0.35 34.68 1.82
224 231 7.439381 ACTCAAATGTTCAAATGCTCTGAAAT 58.561 30.769 0.00 0.00 34.68 2.17
225 232 6.808829 ACTCAAATGTTCAAATGCTCTGAAA 58.191 32.000 0.00 0.00 34.68 2.69
226 233 6.395426 ACTCAAATGTTCAAATGCTCTGAA 57.605 33.333 0.00 0.00 0.00 3.02
227 234 6.348786 GCTACTCAAATGTTCAAATGCTCTGA 60.349 38.462 0.00 0.00 0.00 3.27
228 235 5.798934 GCTACTCAAATGTTCAAATGCTCTG 59.201 40.000 0.00 0.00 0.00 3.35
229 236 5.709164 AGCTACTCAAATGTTCAAATGCTCT 59.291 36.000 0.00 0.00 0.00 4.09
230 237 5.947443 AGCTACTCAAATGTTCAAATGCTC 58.053 37.500 0.00 0.00 0.00 4.26
231 238 5.709164 AGAGCTACTCAAATGTTCAAATGCT 59.291 36.000 0.00 0.00 32.06 3.79
232 239 5.947443 AGAGCTACTCAAATGTTCAAATGC 58.053 37.500 0.00 0.00 32.06 3.56
318 325 6.989659 ACATCTGAGTAGTTCTCGGTAAAAA 58.010 36.000 5.60 0.00 46.51 1.94
319 326 6.349944 GGACATCTGAGTAGTTCTCGGTAAAA 60.350 42.308 5.60 0.00 46.51 1.52
320 327 5.125097 GGACATCTGAGTAGTTCTCGGTAAA 59.875 44.000 5.60 0.00 46.51 2.01
321 328 4.639310 GGACATCTGAGTAGTTCTCGGTAA 59.361 45.833 5.60 0.00 46.51 2.85
322 329 4.197750 GGACATCTGAGTAGTTCTCGGTA 58.802 47.826 5.60 0.00 46.51 4.02
323 330 3.018149 GGACATCTGAGTAGTTCTCGGT 58.982 50.000 5.60 0.00 46.51 4.69
325 332 4.703645 TTGGACATCTGAGTAGTTCTCG 57.296 45.455 0.00 0.00 45.46 4.04
326 333 6.634805 TCATTTGGACATCTGAGTAGTTCTC 58.365 40.000 0.00 0.00 43.03 2.87
327 334 6.611613 TCATTTGGACATCTGAGTAGTTCT 57.388 37.500 0.00 0.00 0.00 3.01
328 335 7.856145 AATCATTTGGACATCTGAGTAGTTC 57.144 36.000 0.00 0.00 0.00 3.01
329 336 7.884877 TCAAATCATTTGGACATCTGAGTAGTT 59.115 33.333 10.30 0.00 40.98 2.24
330 337 7.397221 TCAAATCATTTGGACATCTGAGTAGT 58.603 34.615 10.30 0.00 40.98 2.73
331 338 7.854557 TCAAATCATTTGGACATCTGAGTAG 57.145 36.000 10.30 0.00 40.98 2.57
332 339 8.634335 TTTCAAATCATTTGGACATCTGAGTA 57.366 30.769 10.30 0.00 40.98 2.59
333 340 7.528996 TTTCAAATCATTTGGACATCTGAGT 57.471 32.000 10.30 0.00 40.98 3.41
334 341 8.997621 AATTTCAAATCATTTGGACATCTGAG 57.002 30.769 10.30 0.00 40.98 3.35
335 342 9.210329 CAAATTTCAAATCATTTGGACATCTGA 57.790 29.630 10.30 0.00 40.98 3.27
336 343 9.210329 TCAAATTTCAAATCATTTGGACATCTG 57.790 29.630 10.30 2.35 39.76 2.90
337 344 9.781633 TTCAAATTTCAAATCATTTGGACATCT 57.218 25.926 10.30 0.00 39.76 2.90
339 346 8.508875 GCTTCAAATTTCAAATCATTTGGACAT 58.491 29.630 10.30 0.00 39.76 3.06
340 347 7.307278 CGCTTCAAATTTCAAATCATTTGGACA 60.307 33.333 10.30 0.00 39.76 4.02
341 348 7.011189 CGCTTCAAATTTCAAATCATTTGGAC 58.989 34.615 10.30 0.00 39.76 4.02
342 349 6.927936 TCGCTTCAAATTTCAAATCATTTGGA 59.072 30.769 10.30 0.00 39.76 3.53
343 350 7.119605 TCGCTTCAAATTTCAAATCATTTGG 57.880 32.000 10.30 0.00 39.76 3.28
344 351 8.063038 TGTTCGCTTCAAATTTCAAATCATTTG 58.937 29.630 3.46 3.46 40.39 2.32
345 352 8.140677 TGTTCGCTTCAAATTTCAAATCATTT 57.859 26.923 0.00 0.00 0.00 2.32
346 353 7.712264 TGTTCGCTTCAAATTTCAAATCATT 57.288 28.000 0.00 0.00 0.00 2.57
347 354 7.599621 TGATGTTCGCTTCAAATTTCAAATCAT 59.400 29.630 0.00 0.00 0.00 2.45
348 355 6.922407 TGATGTTCGCTTCAAATTTCAAATCA 59.078 30.769 0.00 0.00 0.00 2.57
349 356 7.337150 TGATGTTCGCTTCAAATTTCAAATC 57.663 32.000 0.00 0.00 0.00 2.17
350 357 7.894376 ATGATGTTCGCTTCAAATTTCAAAT 57.106 28.000 0.00 0.00 35.37 2.32
351 358 7.864882 TGTATGATGTTCGCTTCAAATTTCAAA 59.135 29.630 0.00 0.00 35.37 2.69
352 359 7.366513 TGTATGATGTTCGCTTCAAATTTCAA 58.633 30.769 0.00 0.00 35.37 2.69
353 360 6.907741 TGTATGATGTTCGCTTCAAATTTCA 58.092 32.000 0.00 0.00 35.37 2.69
354 361 7.697710 TGATGTATGATGTTCGCTTCAAATTTC 59.302 33.333 0.00 0.00 35.37 2.17
355 362 7.537715 TGATGTATGATGTTCGCTTCAAATTT 58.462 30.769 0.00 0.00 35.37 1.82
356 363 7.087409 TGATGTATGATGTTCGCTTCAAATT 57.913 32.000 0.00 0.00 35.37 1.82
357 364 6.682423 TGATGTATGATGTTCGCTTCAAAT 57.318 33.333 0.00 0.00 35.37 2.32
358 365 6.493449 TTGATGTATGATGTTCGCTTCAAA 57.507 33.333 0.00 0.00 35.37 2.69
359 366 6.493449 TTTGATGTATGATGTTCGCTTCAA 57.507 33.333 0.00 0.00 35.37 2.69
360 367 6.682423 ATTTGATGTATGATGTTCGCTTCA 57.318 33.333 0.00 0.00 36.03 3.02
361 368 9.322776 GATAATTTGATGTATGATGTTCGCTTC 57.677 33.333 0.00 0.00 0.00 3.86
362 369 9.060347 AGATAATTTGATGTATGATGTTCGCTT 57.940 29.630 0.00 0.00 0.00 4.68
363 370 8.613060 AGATAATTTGATGTATGATGTTCGCT 57.387 30.769 0.00 0.00 0.00 4.93
371 378 9.962809 TGGCATGATAGATAATTTGATGTATGA 57.037 29.630 0.00 0.00 0.00 2.15
440 447 4.987285 TCTGCATTTGCGCTCAATTAAAAA 59.013 33.333 9.73 0.00 45.83 1.94
441 448 4.554292 TCTGCATTTGCGCTCAATTAAAA 58.446 34.783 9.73 0.00 45.83 1.52
442 449 4.171663 TCTGCATTTGCGCTCAATTAAA 57.828 36.364 9.73 0.00 45.83 1.52
443 450 3.846423 TCTGCATTTGCGCTCAATTAA 57.154 38.095 9.73 0.00 45.83 1.40
444 451 3.377798 TCATCTGCATTTGCGCTCAATTA 59.622 39.130 9.73 0.00 45.83 1.40
445 452 2.164827 TCATCTGCATTTGCGCTCAATT 59.835 40.909 9.73 0.00 45.83 2.32
446 453 1.746787 TCATCTGCATTTGCGCTCAAT 59.253 42.857 9.73 4.04 45.83 2.57
447 454 1.166989 TCATCTGCATTTGCGCTCAA 58.833 45.000 9.73 1.24 45.83 3.02
448 455 1.385528 ATCATCTGCATTTGCGCTCA 58.614 45.000 9.73 0.00 45.83 4.26
449 456 2.033049 AGAATCATCTGCATTTGCGCTC 59.967 45.455 9.73 0.00 45.83 5.03
450 457 2.022195 AGAATCATCTGCATTTGCGCT 58.978 42.857 9.73 0.00 45.83 5.92
451 458 2.117137 CAGAATCATCTGCATTTGCGC 58.883 47.619 0.00 0.00 46.11 6.09
461 468 3.359950 GTTTTGGCTCCCAGAATCATCT 58.640 45.455 0.00 0.00 33.81 2.90
462 469 2.098117 CGTTTTGGCTCCCAGAATCATC 59.902 50.000 0.00 0.00 33.81 2.92
463 470 2.094675 CGTTTTGGCTCCCAGAATCAT 58.905 47.619 0.00 0.00 33.81 2.45
464 471 1.533625 CGTTTTGGCTCCCAGAATCA 58.466 50.000 0.00 0.00 33.81 2.57
465 472 0.171231 GCGTTTTGGCTCCCAGAATC 59.829 55.000 0.00 0.00 33.81 2.52
466 473 1.250840 GGCGTTTTGGCTCCCAGAAT 61.251 55.000 0.00 0.00 40.72 2.40
467 474 1.901464 GGCGTTTTGGCTCCCAGAA 60.901 57.895 0.00 0.00 40.72 3.02
468 475 2.282180 GGCGTTTTGGCTCCCAGA 60.282 61.111 0.00 0.00 40.72 3.86
475 482 2.556287 CGAGTGAGGCGTTTTGGC 59.444 61.111 0.00 0.00 45.27 4.52
476 483 1.164041 AACCGAGTGAGGCGTTTTGG 61.164 55.000 0.00 0.00 33.69 3.28
477 484 0.041312 CAACCGAGTGAGGCGTTTTG 60.041 55.000 0.00 0.00 33.69 2.44
478 485 1.164041 CCAACCGAGTGAGGCGTTTT 61.164 55.000 0.00 0.00 33.69 2.43
479 486 1.597027 CCAACCGAGTGAGGCGTTT 60.597 57.895 0.00 0.00 33.69 3.60
480 487 2.030562 CCAACCGAGTGAGGCGTT 59.969 61.111 0.00 0.00 33.69 4.84
481 488 4.681978 GCCAACCGAGTGAGGCGT 62.682 66.667 0.00 0.00 37.41 5.68
484 491 2.358737 GGTGCCAACCGAGTGAGG 60.359 66.667 0.00 0.00 36.51 3.86
492 499 1.908483 TTTTTGGTGGGTGCCAACC 59.092 52.632 7.85 7.85 46.98 3.77
534 541 1.333636 ATTCCTCTGGGTCAGCCGAG 61.334 60.000 7.53 7.53 41.35 4.63
551 558 1.299976 GCCGTGTGGGAGAGGAATT 59.700 57.895 0.00 0.00 38.47 2.17
695 716 2.185350 CTGCGCTCTGGTAGTGGG 59.815 66.667 9.73 0.00 36.15 4.61
719 740 0.322008 GTTGAAGGAGGAGGGTGCAG 60.322 60.000 0.00 0.00 0.00 4.41
733 758 2.223745 GCGGTCAAGGGTAAAGTTGAA 58.776 47.619 0.00 0.00 34.52 2.69
734 759 1.543871 GGCGGTCAAGGGTAAAGTTGA 60.544 52.381 0.00 0.00 0.00 3.18
737 762 1.004200 CGGCGGTCAAGGGTAAAGT 60.004 57.895 0.00 0.00 0.00 2.66
835 875 0.818040 GTTCGCTGAAAGGTGGTGGT 60.818 55.000 0.00 0.00 0.00 4.16
836 876 1.515521 GGTTCGCTGAAAGGTGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
837 877 0.817634 TGGTTCGCTGAAAGGTGGTG 60.818 55.000 0.00 0.00 0.00 4.17
895 935 3.554692 GTTGACGCTCGATGGCCG 61.555 66.667 0.00 0.00 40.25 6.13
896 936 3.554692 CGTTGACGCTCGATGGCC 61.555 66.667 0.00 0.00 0.00 5.36
897 937 1.812214 GATCGTTGACGCTCGATGGC 61.812 60.000 4.84 0.00 44.90 4.40
898 938 0.525455 TGATCGTTGACGCTCGATGG 60.525 55.000 4.84 0.00 44.90 3.51
899 939 0.842613 CTGATCGTTGACGCTCGATG 59.157 55.000 4.84 0.27 44.90 3.84
900 940 0.867753 GCTGATCGTTGACGCTCGAT 60.868 55.000 0.00 0.00 47.00 3.59
901 941 1.514228 GCTGATCGTTGACGCTCGA 60.514 57.895 0.00 0.00 37.31 4.04
902 942 1.801512 TGCTGATCGTTGACGCTCG 60.802 57.895 0.00 0.00 37.31 5.03
903 943 1.704582 GTGCTGATCGTTGACGCTC 59.295 57.895 0.00 0.00 39.60 5.03
904 944 2.088763 CGTGCTGATCGTTGACGCT 61.089 57.895 0.00 0.00 39.60 5.07
918 958 4.166011 GGACAATGCGCTCCGTGC 62.166 66.667 9.73 4.03 39.75 5.34
919 959 2.434884 AGGACAATGCGCTCCGTG 60.435 61.111 9.73 3.69 0.00 4.94
961 1011 3.074538 CCCTCCTCCCAGAAAGAAAAGAA 59.925 47.826 0.00 0.00 0.00 2.52
962 1012 2.644798 CCCTCCTCCCAGAAAGAAAAGA 59.355 50.000 0.00 0.00 0.00 2.52
963 1013 2.291217 CCCCTCCTCCCAGAAAGAAAAG 60.291 54.545 0.00 0.00 0.00 2.27
964 1014 1.710809 CCCCTCCTCCCAGAAAGAAAA 59.289 52.381 0.00 0.00 0.00 2.29
965 1015 1.372501 CCCCTCCTCCCAGAAAGAAA 58.627 55.000 0.00 0.00 0.00 2.52
1442 1827 3.311871 TGCAAATGTTCAAATGTGTTGGC 59.688 39.130 0.00 0.00 0.00 4.52
1498 1886 5.438698 TTTCCAACTATAACGGGATTGGA 57.561 39.130 0.00 0.00 45.47 3.53
1772 2172 2.045536 GGAGAGGGCAGGCACAAG 60.046 66.667 0.00 0.00 0.00 3.16
1784 2184 4.478206 TTGGCTAATGTCTGAAGGAGAG 57.522 45.455 0.00 0.00 0.00 3.20
1815 2215 6.833416 TGGGTATCTTCTTGTTGGGAATTATG 59.167 38.462 0.00 0.00 0.00 1.90
1854 2254 4.518217 GCTTGATAATTCCGTTGACATCG 58.482 43.478 0.00 0.00 0.00 3.84
1949 2394 7.279981 TGAAACATATGGTTCTGTGTATGCTAC 59.720 37.037 28.89 4.38 42.08 3.58
1994 2439 9.424319 TGTTTGACAGCAAAGTTTACAAATAAA 57.576 25.926 0.00 0.00 44.12 1.40
2058 2531 1.164411 TGTTGCTTAAGGACGGCATG 58.836 50.000 4.29 0.00 35.84 4.06
2114 2587 4.487948 ACGTCATCCTGAATTTTGCATTG 58.512 39.130 0.00 0.00 0.00 2.82
2115 2588 4.789012 ACGTCATCCTGAATTTTGCATT 57.211 36.364 0.00 0.00 0.00 3.56
2400 2882 0.460109 CCGTCATCTCGGCAATGTGA 60.460 55.000 0.00 0.00 43.96 3.58
2548 3031 6.436218 TCAGTTAGCATGTCTAGGACAAGTTA 59.564 38.462 4.46 0.64 45.96 2.24
2673 3156 8.783660 TCAGTACCTTGAGGATATAATCAGTT 57.216 34.615 3.59 0.00 38.94 3.16
2682 3165 5.724370 TGTTGGATTCAGTACCTTGAGGATA 59.276 40.000 3.59 0.00 38.94 2.59
2730 3239 6.346477 ACATAACAGTCAGTCAGAGCTTTA 57.654 37.500 0.00 0.00 0.00 1.85
2877 3387 4.160329 TGACAATCAGACTGTCTAGGGTT 58.840 43.478 13.03 0.00 43.03 4.11
2878 3388 3.779444 TGACAATCAGACTGTCTAGGGT 58.221 45.455 13.03 6.64 43.03 4.34
2879 3389 4.691175 CATGACAATCAGACTGTCTAGGG 58.309 47.826 13.03 3.48 43.03 3.53
2885 3395 2.617276 CCAGGCATGACAATCAGACTGT 60.617 50.000 0.00 0.00 32.43 3.55
2902 3412 5.982890 ATTTTTGTCCTACAATGTCCAGG 57.017 39.130 0.00 0.00 38.00 4.45
2906 3416 9.774742 GACTTGATATTTTTGTCCTACAATGTC 57.225 33.333 0.00 0.00 38.00 3.06
2926 3449 7.403312 TGTTCAAGAAATTTGGAAGACTTGA 57.597 32.000 11.61 11.61 40.79 3.02
2927 3450 7.113965 CGATGTTCAAGAAATTTGGAAGACTTG 59.886 37.037 0.00 2.08 36.91 3.16
2928 3451 7.141363 CGATGTTCAAGAAATTTGGAAGACTT 58.859 34.615 0.00 0.00 0.00 3.01
2929 3452 6.294176 CCGATGTTCAAGAAATTTGGAAGACT 60.294 38.462 0.00 0.00 0.00 3.24
2930 3453 5.858581 CCGATGTTCAAGAAATTTGGAAGAC 59.141 40.000 0.00 0.00 0.00 3.01
2931 3454 5.767665 TCCGATGTTCAAGAAATTTGGAAGA 59.232 36.000 0.00 0.00 0.00 2.87
2932 3455 6.012658 TCCGATGTTCAAGAAATTTGGAAG 57.987 37.500 0.00 0.00 0.00 3.46
2933 3456 6.434028 AGATCCGATGTTCAAGAAATTTGGAA 59.566 34.615 0.00 0.00 0.00 3.53
2934 3457 5.945784 AGATCCGATGTTCAAGAAATTTGGA 59.054 36.000 0.00 0.00 0.00 3.53
2953 3476 5.848833 AAGAAATCTTGGCAATGAGATCC 57.151 39.130 0.00 0.00 34.38 3.36
2973 3496 9.088512 GAGAAGTATATGTTGTGGTTCTACAAG 57.911 37.037 2.18 0.00 40.89 3.16
2976 3499 9.035607 CATGAGAAGTATATGTTGTGGTTCTAC 57.964 37.037 0.00 0.00 0.00 2.59
2978 3503 7.851228 TCATGAGAAGTATATGTTGTGGTTCT 58.149 34.615 0.00 0.00 0.00 3.01
3012 3537 5.624344 AATGGAGATCGTATAGTGTACGG 57.376 43.478 17.85 1.85 40.90 4.02
3013 3538 7.578852 TGTTAATGGAGATCGTATAGTGTACG 58.421 38.462 12.73 12.73 41.79 3.67
3034 3560 6.183360 TGCTATGACAACGAGATGAGATGTTA 60.183 38.462 0.00 0.00 0.00 2.41
3099 3625 7.234166 ACCATCATCTCACCTTCAGAAAAATTT 59.766 33.333 0.00 0.00 0.00 1.82
3168 3694 4.153411 GGTATGTGGTAGAGCTATCCAGT 58.847 47.826 4.54 1.06 31.54 4.00
3210 3736 3.624861 CACTGAGGATGTTGGTGATTAGC 59.375 47.826 0.00 0.00 0.00 3.09
3447 3989 6.567050 ACAACACCAAGTATACATAGTACGG 58.433 40.000 5.50 0.00 0.00 4.02
3461 4003 8.506168 AATATGGTAAGATGTACAACACCAAG 57.494 34.615 16.12 0.00 39.36 3.61
3464 4006 9.783256 GAAAAATATGGTAAGATGTACAACACC 57.217 33.333 0.00 2.53 0.00 4.16
3499 4118 8.062065 AGTCAAAACTTATTTGAGTTTGACCA 57.938 30.769 18.81 0.00 46.23 4.02
3517 4136 9.847224 AAGTTCTAGATTTGTCCTAAGTCAAAA 57.153 29.630 0.00 0.00 35.22 2.44
3544 4163 5.374921 ACTCCATCCATTCTGAATTAGCTG 58.625 41.667 0.00 0.00 0.00 4.24
3553 4172 9.597170 CATATACTTATGACTCCATCCATTCTG 57.403 37.037 0.00 0.00 37.94 3.02
3554 4173 9.331466 ACATATACTTATGACTCCATCCATTCT 57.669 33.333 0.25 0.00 37.94 2.40
3919 4555 8.274322 AGTCCCATTACTGTCATCAATCAATTA 58.726 33.333 0.00 0.00 0.00 1.40
3920 4556 7.121382 AGTCCCATTACTGTCATCAATCAATT 58.879 34.615 0.00 0.00 0.00 2.32
3921 4557 6.666678 AGTCCCATTACTGTCATCAATCAAT 58.333 36.000 0.00 0.00 0.00 2.57
3922 4558 6.065976 AGTCCCATTACTGTCATCAATCAA 57.934 37.500 0.00 0.00 0.00 2.57
3923 4559 5.698741 AGTCCCATTACTGTCATCAATCA 57.301 39.130 0.00 0.00 0.00 2.57
3924 4560 5.992217 GGTAGTCCCATTACTGTCATCAATC 59.008 44.000 0.00 0.00 0.00 2.67
3925 4561 5.667626 AGGTAGTCCCATTACTGTCATCAAT 59.332 40.000 0.00 0.00 34.66 2.57
3926 4562 5.030147 AGGTAGTCCCATTACTGTCATCAA 58.970 41.667 0.00 0.00 34.66 2.57
3927 4563 4.405680 CAGGTAGTCCCATTACTGTCATCA 59.594 45.833 0.00 0.00 34.66 3.07
3928 4564 4.649674 TCAGGTAGTCCCATTACTGTCATC 59.350 45.833 0.00 0.00 34.66 2.92
3929 4565 4.620723 TCAGGTAGTCCCATTACTGTCAT 58.379 43.478 0.00 0.00 34.66 3.06
3930 4566 4.055710 TCAGGTAGTCCCATTACTGTCA 57.944 45.455 0.00 0.00 34.66 3.58
3931 4567 6.071278 GGATATCAGGTAGTCCCATTACTGTC 60.071 46.154 4.83 0.00 34.66 3.51
3932 4568 5.780793 GGATATCAGGTAGTCCCATTACTGT 59.219 44.000 4.83 0.00 34.66 3.55
3933 4569 5.780282 TGGATATCAGGTAGTCCCATTACTG 59.220 44.000 4.83 0.00 34.66 2.74
3934 4570 5.977533 TGGATATCAGGTAGTCCCATTACT 58.022 41.667 4.83 0.00 34.66 2.24
3935 4571 6.670027 AGATGGATATCAGGTAGTCCCATTAC 59.330 42.308 4.83 0.00 35.70 1.89
3936 4572 6.669591 CAGATGGATATCAGGTAGTCCCATTA 59.330 42.308 4.83 0.00 35.70 1.90
3937 4573 5.486775 CAGATGGATATCAGGTAGTCCCATT 59.513 44.000 4.83 0.00 35.70 3.16
3938 4574 5.028802 CAGATGGATATCAGGTAGTCCCAT 58.971 45.833 4.83 0.00 35.70 4.00
3939 4575 4.420206 CAGATGGATATCAGGTAGTCCCA 58.580 47.826 4.83 0.00 35.70 4.37
3940 4576 3.196685 GCAGATGGATATCAGGTAGTCCC 59.803 52.174 4.83 0.00 35.70 4.46
3941 4577 3.834813 TGCAGATGGATATCAGGTAGTCC 59.165 47.826 4.83 0.00 35.70 3.85
3942 4578 4.620332 GCTGCAGATGGATATCAGGTAGTC 60.620 50.000 20.43 0.00 35.70 2.59
3943 4579 3.260380 GCTGCAGATGGATATCAGGTAGT 59.740 47.826 20.43 0.00 35.70 2.73
3944 4580 3.514706 AGCTGCAGATGGATATCAGGTAG 59.485 47.826 20.43 0.00 35.70 3.18
3945 4581 3.514539 AGCTGCAGATGGATATCAGGTA 58.485 45.455 20.43 0.00 35.70 3.08
3946 4582 2.336891 AGCTGCAGATGGATATCAGGT 58.663 47.619 20.43 0.00 35.70 4.00
3947 4583 3.075148 CAAGCTGCAGATGGATATCAGG 58.925 50.000 20.43 0.00 35.70 3.86
3948 4584 3.075148 CCAAGCTGCAGATGGATATCAG 58.925 50.000 26.53 0.00 36.27 2.90
3949 4585 2.812983 GCCAAGCTGCAGATGGATATCA 60.813 50.000 31.81 0.00 36.27 2.15
3950 4586 1.811359 GCCAAGCTGCAGATGGATATC 59.189 52.381 31.81 16.64 36.27 1.63
3951 4587 1.424302 AGCCAAGCTGCAGATGGATAT 59.576 47.619 31.81 18.76 37.57 1.63
3952 4588 0.841961 AGCCAAGCTGCAGATGGATA 59.158 50.000 31.81 0.00 37.57 2.59
3953 4589 0.465824 GAGCCAAGCTGCAGATGGAT 60.466 55.000 31.81 28.30 39.88 3.41
3954 4590 1.077930 GAGCCAAGCTGCAGATGGA 60.078 57.895 31.81 0.00 39.88 3.41
3955 4591 2.119655 GGAGCCAAGCTGCAGATGG 61.120 63.158 26.37 26.37 46.16 3.51
3956 4592 3.510846 GGAGCCAAGCTGCAGATG 58.489 61.111 20.43 15.23 46.16 2.90
3962 4598 2.996631 ACTGAAATAGGAGCCAAGCTG 58.003 47.619 0.00 0.00 39.88 4.24
3963 4599 3.009473 TGAACTGAAATAGGAGCCAAGCT 59.991 43.478 0.00 0.00 43.88 3.74
3964 4600 3.347216 TGAACTGAAATAGGAGCCAAGC 58.653 45.455 0.00 0.00 0.00 4.01
3965 4601 3.944015 CCTGAACTGAAATAGGAGCCAAG 59.056 47.826 0.00 0.00 31.91 3.61
3966 4602 3.873801 GCCTGAACTGAAATAGGAGCCAA 60.874 47.826 0.00 0.00 31.91 4.52
3967 4603 2.356125 GCCTGAACTGAAATAGGAGCCA 60.356 50.000 0.00 0.00 31.91 4.75
3968 4604 2.293170 GCCTGAACTGAAATAGGAGCC 58.707 52.381 0.00 0.00 31.91 4.70
3969 4605 2.991250 TGCCTGAACTGAAATAGGAGC 58.009 47.619 0.00 0.00 31.91 4.70
3970 4606 6.767456 AGATATGCCTGAACTGAAATAGGAG 58.233 40.000 0.00 0.00 31.91 3.69
3971 4607 6.753913 AGATATGCCTGAACTGAAATAGGA 57.246 37.500 0.00 0.00 31.91 2.94
3972 4608 6.994496 TGAAGATATGCCTGAACTGAAATAGG 59.006 38.462 0.00 0.00 0.00 2.57
3973 4609 8.618702 ATGAAGATATGCCTGAACTGAAATAG 57.381 34.615 0.00 0.00 0.00 1.73
3974 4610 9.494271 GTATGAAGATATGCCTGAACTGAAATA 57.506 33.333 0.00 0.00 0.00 1.40
4026 4680 6.252599 TGCAATGGATATCAAGGTAGTTCT 57.747 37.500 4.83 0.00 0.00 3.01
4036 4690 3.117776 ACCAGAAGCTGCAATGGATATCA 60.118 43.478 20.18 0.00 36.62 2.15
4038 4692 3.117776 TCACCAGAAGCTGCAATGGATAT 60.118 43.478 20.18 0.61 36.62 1.63
4039 4693 2.239402 TCACCAGAAGCTGCAATGGATA 59.761 45.455 20.18 8.16 36.62 2.59
4040 4694 1.005097 TCACCAGAAGCTGCAATGGAT 59.995 47.619 20.18 6.11 36.62 3.41
4041 4695 0.401356 TCACCAGAAGCTGCAATGGA 59.599 50.000 20.18 1.21 36.62 3.41
4043 4697 2.089201 TCATCACCAGAAGCTGCAATG 58.911 47.619 1.02 0.00 0.00 2.82
4044 4698 2.089980 GTCATCACCAGAAGCTGCAAT 58.910 47.619 1.02 0.00 0.00 3.56
4045 4699 1.202794 TGTCATCACCAGAAGCTGCAA 60.203 47.619 1.02 0.00 0.00 4.08
4409 5063 7.542025 TCTTCTTCCAGACGTATAGTTTAACC 58.458 38.462 0.00 0.00 0.00 2.85
4417 5071 6.152154 TGTCATGTTCTTCTTCCAGACGTATA 59.848 38.462 0.00 0.00 0.00 1.47
4707 5382 8.691661 AAATTTACATTTCAGTGACCTAGTGT 57.308 30.769 0.00 0.00 0.00 3.55
4777 5462 3.469859 TCCCCAGATCCACCATTTCTTA 58.530 45.455 0.00 0.00 0.00 2.10
4798 5483 4.357325 ACTGAAGAGGTGACATCCAGTAT 58.643 43.478 7.24 0.00 0.00 2.12
4861 5546 1.202132 CGACATACCCGTTGCCATTTG 60.202 52.381 0.00 0.00 0.00 2.32
4946 5632 6.391227 AAATGGTTTTGACGATCAGAACTT 57.609 33.333 15.59 6.06 40.21 2.66
5052 5738 2.994417 GCCCCAACGCCAATCCAA 60.994 61.111 0.00 0.00 0.00 3.53
5299 5989 1.039785 TGCAGCCGCAGAGATAGAGT 61.040 55.000 0.00 0.00 45.36 3.24
5382 6072 0.179026 GGCCGGGGGTTATCTCTTTC 60.179 60.000 2.18 0.00 0.00 2.62
5385 6079 1.459730 GAGGCCGGGGGTTATCTCT 60.460 63.158 2.18 0.00 0.00 3.10
5610 6310 2.158667 TGAAGGGAGTTGGGAAACTGTC 60.159 50.000 0.00 0.00 32.22 3.51
5650 6351 7.281774 AGTGCACAGATTAAGTTCTAATGATGG 59.718 37.037 21.04 0.00 0.00 3.51
5651 6352 8.121086 CAGTGCACAGATTAAGTTCTAATGATG 58.879 37.037 21.04 0.00 0.00 3.07
5671 6372 4.136051 TGATGTGATTGAGTTTCAGTGCA 58.864 39.130 0.00 0.00 0.00 4.57
5757 6489 6.403866 TTCATTTCCTGTTATGCAACAAGT 57.596 33.333 0.00 0.00 43.92 3.16
5916 6648 4.566488 CCTTCAATGTAGCCTCCAGTCTTT 60.566 45.833 0.00 0.00 0.00 2.52
5955 6687 1.596934 CTGCTTCTTCGGGTAGCCA 59.403 57.895 12.31 0.00 34.03 4.75
6132 6864 1.289380 GTTTCCGACTCGAGTGCCT 59.711 57.895 25.58 0.00 0.00 4.75
6133 6865 0.389948 ATGTTTCCGACTCGAGTGCC 60.390 55.000 25.58 8.65 0.00 5.01
6135 6867 3.364023 GTGTAATGTTTCCGACTCGAGTG 59.636 47.826 25.58 14.86 0.00 3.51
6136 6868 3.255149 AGTGTAATGTTTCCGACTCGAGT 59.745 43.478 20.18 20.18 0.00 4.18
6139 6871 3.739300 ACAAGTGTAATGTTTCCGACTCG 59.261 43.478 0.00 0.00 0.00 4.18
6141 6873 5.236478 CAGAACAAGTGTAATGTTTCCGACT 59.764 40.000 0.00 0.00 40.90 4.18
6142 6874 5.235616 TCAGAACAAGTGTAATGTTTCCGAC 59.764 40.000 0.00 0.00 40.90 4.79
6143 6875 5.361427 TCAGAACAAGTGTAATGTTTCCGA 58.639 37.500 0.00 0.00 40.90 4.55
6145 6877 7.041098 ACAGATCAGAACAAGTGTAATGTTTCC 60.041 37.037 0.00 0.00 40.90 3.13
6146 6878 7.865707 ACAGATCAGAACAAGTGTAATGTTTC 58.134 34.615 0.00 0.00 40.90 2.78
6171 6912 9.083422 TGTTAAAATGGATGAAATGGAGTTGTA 57.917 29.630 0.00 0.00 0.00 2.41
6188 6929 9.499585 CTTGCTCTATGAACATCTGTTAAAATG 57.500 33.333 0.00 0.00 38.56 2.32
6189 6930 9.236006 ACTTGCTCTATGAACATCTGTTAAAAT 57.764 29.630 0.00 0.00 38.56 1.82
6453 7194 1.927487 AAATGTCAATGCTGGGCTGA 58.073 45.000 0.00 0.00 0.00 4.26
6459 7200 2.919229 GGCTTCGAAAATGTCAATGCTG 59.081 45.455 0.00 0.00 0.00 4.41
6500 7241 9.017669 GCATGAAAAAGTGAATTTCTGCTATAG 57.982 33.333 0.00 0.00 37.61 1.31
6506 7247 7.416154 ACATGCATGAAAAAGTGAATTTCTG 57.584 32.000 32.75 1.41 37.60 3.02
6514 7255 5.987777 TTGGAAACATGCATGAAAAAGTG 57.012 34.783 32.75 5.86 42.32 3.16
6515 7256 6.998968 TTTTGGAAACATGCATGAAAAAGT 57.001 29.167 32.75 6.55 42.32 2.66
6663 7416 9.494271 GGAAATTAAGAAAGATCAAGCCTTTTT 57.506 29.630 0.00 0.00 34.33 1.94
6664 7417 8.874156 AGGAAATTAAGAAAGATCAAGCCTTTT 58.126 29.630 0.00 0.00 34.33 2.27
6666 7419 7.123397 GGAGGAAATTAAGAAAGATCAAGCCTT 59.877 37.037 0.00 0.00 0.00 4.35
6667 7420 6.605194 GGAGGAAATTAAGAAAGATCAAGCCT 59.395 38.462 0.00 0.00 0.00 4.58
6668 7421 6.605194 AGGAGGAAATTAAGAAAGATCAAGCC 59.395 38.462 0.00 0.00 0.00 4.35
6669 7422 7.637631 AGGAGGAAATTAAGAAAGATCAAGC 57.362 36.000 0.00 0.00 0.00 4.01
6672 7425 9.586732 TGAAAAGGAGGAAATTAAGAAAGATCA 57.413 29.630 0.00 0.00 0.00 2.92
6711 7464 2.235155 TCAAAGCCATGCAATGCAAGAT 59.765 40.909 13.45 2.26 44.97 2.40
6763 7516 1.144057 CCCGTTCGATTCCCTGAGG 59.856 63.158 0.00 0.00 0.00 3.86
6764 7517 0.179108 GACCCGTTCGATTCCCTGAG 60.179 60.000 0.00 0.00 0.00 3.35
6798 7551 0.402504 AAGTTGCCGGATTGTACCCA 59.597 50.000 5.05 0.00 0.00 4.51
6834 7587 2.936919 TGTCTTCTTGTGCCTGTGAT 57.063 45.000 0.00 0.00 0.00 3.06
6864 7617 5.700722 TCTTGTAGACTTCTGCGAAACTA 57.299 39.130 0.00 0.00 0.00 2.24
6915 7671 5.998981 TCAATCCTTGAGCAAAAATGCAAAT 59.001 32.000 3.41 0.00 34.08 2.32
6946 7702 9.857656 ATATTGTTTGTCAGTCCATCATATCTT 57.142 29.630 0.00 0.00 0.00 2.40
6983 7755 5.654209 GCTCTGGTTTCTCCTGGAAAATATT 59.346 40.000 0.00 0.00 44.34 1.28
6991 7763 0.671781 CACGCTCTGGTTTCTCCTGG 60.672 60.000 0.00 0.00 36.08 4.45
7271 8043 0.467384 AGATCCCCATGAAGAGCACG 59.533 55.000 0.00 0.00 0.00 5.34
7803 8575 2.435059 GCCCAGGAAGTCGTGCTC 60.435 66.667 0.00 0.00 0.00 4.26
8035 8810 4.025647 CCGAGAGAAAAAGAATATGCGACC 60.026 45.833 0.00 0.00 0.00 4.79
8135 8917 7.548075 TCTTGCTACTAAGTAAACCATTGCTAC 59.452 37.037 0.00 0.00 30.67 3.58
8204 9014 3.181520 CCGTTCTGGTTCATCGAATTCAC 60.182 47.826 6.22 0.00 0.00 3.18
8224 9034 4.079850 AGAGCCACTCAGCAGCCG 62.080 66.667 0.00 0.00 32.06 5.52
8251 9061 3.573967 GAGGCTGGAGATAGAAGAGGAAG 59.426 52.174 0.00 0.00 0.00 3.46
8252 9062 3.206412 AGAGGCTGGAGATAGAAGAGGAA 59.794 47.826 0.00 0.00 0.00 3.36
8264 9074 0.967887 TCTCAACGGAGAGGCTGGAG 60.968 60.000 0.00 0.00 45.12 3.86
8273 9083 1.447489 CAGGCAGCTCTCAACGGAG 60.447 63.158 0.00 0.00 42.80 4.63
8288 9098 4.988598 AAGCCGTGTCGCCACAGG 62.989 66.667 0.00 0.08 41.93 4.00
8289 9099 3.716006 CAAGCCGTGTCGCCACAG 61.716 66.667 0.00 0.00 41.93 3.66
8290 9100 4.539083 ACAAGCCGTGTCGCCACA 62.539 61.111 0.00 0.00 41.93 4.17
8291 9101 4.012895 CACAAGCCGTGTCGCCAC 62.013 66.667 0.00 0.00 38.92 5.01
8302 9112 4.432741 GAGGGAGGGGGCACAAGC 62.433 72.222 0.00 0.00 41.10 4.01
8303 9113 2.612115 AGAGGGAGGGGGCACAAG 60.612 66.667 0.00 0.00 0.00 3.16
8304 9114 2.610859 GAGAGGGAGGGGGCACAA 60.611 66.667 0.00 0.00 0.00 3.33
8305 9115 4.741239 GGAGAGGGAGGGGGCACA 62.741 72.222 0.00 0.00 0.00 4.57
8337 9147 1.411977 CCTCTCACATGCCTACTCTGG 59.588 57.143 0.00 0.00 0.00 3.86
8338 9148 2.100584 GTCCTCTCACATGCCTACTCTG 59.899 54.545 0.00 0.00 0.00 3.35
8339 9149 2.383855 GTCCTCTCACATGCCTACTCT 58.616 52.381 0.00 0.00 0.00 3.24
8340 9150 1.410882 GGTCCTCTCACATGCCTACTC 59.589 57.143 0.00 0.00 0.00 2.59
8341 9151 1.490574 GGTCCTCTCACATGCCTACT 58.509 55.000 0.00 0.00 0.00 2.57
8342 9152 0.103208 CGGTCCTCTCACATGCCTAC 59.897 60.000 0.00 0.00 0.00 3.18
8343 9153 1.676678 GCGGTCCTCTCACATGCCTA 61.677 60.000 0.00 0.00 0.00 3.93
8344 9154 3.023949 GCGGTCCTCTCACATGCCT 62.024 63.158 0.00 0.00 0.00 4.75
8345 9155 2.512515 GCGGTCCTCTCACATGCC 60.513 66.667 0.00 0.00 0.00 4.40
8346 9156 1.812922 CTGCGGTCCTCTCACATGC 60.813 63.158 0.00 0.00 0.00 4.06
8347 9157 1.153489 CCTGCGGTCCTCTCACATG 60.153 63.158 0.00 0.00 0.00 3.21
8348 9158 0.324368 TACCTGCGGTCCTCTCACAT 60.324 55.000 3.45 0.00 37.09 3.21
8349 9159 0.965866 CTACCTGCGGTCCTCTCACA 60.966 60.000 3.45 0.00 37.09 3.58
8350 9160 1.668101 CCTACCTGCGGTCCTCTCAC 61.668 65.000 3.45 0.00 37.09 3.51
8351 9161 1.379977 CCTACCTGCGGTCCTCTCA 60.380 63.158 3.45 0.00 37.09 3.27
8352 9162 1.380112 ACCTACCTGCGGTCCTCTC 60.380 63.158 3.45 0.00 37.09 3.20
8353 9163 1.380112 GACCTACCTGCGGTCCTCT 60.380 63.158 3.45 0.00 44.08 3.69
8354 9164 3.208335 GACCTACCTGCGGTCCTC 58.792 66.667 3.45 0.00 44.08 3.71
8358 9168 0.822164 GTACATGACCTACCTGCGGT 59.178 55.000 0.00 5.58 40.16 5.68
8359 9169 0.821517 TGTACATGACCTACCTGCGG 59.178 55.000 0.00 0.00 0.00 5.69
8360 9170 2.890808 ATGTACATGACCTACCTGCG 57.109 50.000 7.78 0.00 0.00 5.18
8438 9248 0.836606 AAAGTTTGGCCCCAGGTTTG 59.163 50.000 0.00 0.00 0.00 2.93
8462 9272 4.035208 CGCTAAAGTTTTTCCATATCGCCT 59.965 41.667 0.00 0.00 0.00 5.52
8468 9278 7.771826 AGTTATAGGCGCTAAAGTTTTTCCATA 59.228 33.333 7.64 0.00 0.00 2.74
8473 9283 7.820872 TCAGTAGTTATAGGCGCTAAAGTTTTT 59.179 33.333 7.64 0.00 0.00 1.94
8482 9292 7.226128 GGTAATTTTTCAGTAGTTATAGGCGCT 59.774 37.037 7.64 0.00 0.00 5.92
8544 9354 6.352016 TGTGCAATTGGGCTTTATTTTCTA 57.648 33.333 7.72 0.00 34.04 2.10
8546 9356 5.938438 TTGTGCAATTGGGCTTTATTTTC 57.062 34.783 7.72 0.00 34.04 2.29
8569 9379 5.633182 GCATTGTGTTTAAATTCCACATCGT 59.367 36.000 10.01 0.22 38.75 3.73
8571 9381 7.656707 AAGCATTGTGTTTAAATTCCACATC 57.343 32.000 10.01 4.73 38.75 3.06
8646 9460 7.550196 ACAGATGAAATAAACCATTGATTTGGC 59.450 33.333 0.00 0.00 40.68 4.52
8754 9584 4.311816 AGCTTGTGTTGAACTCAATTGG 57.688 40.909 12.47 3.95 38.24 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.