Multiple sequence alignment - TraesCS7D01G385300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G385300 chr7D 100.000 5407 0 0 1 5407 499883716 499889122 0.000000e+00 9985.0
1 TraesCS7D01G385300 chr7D 75.411 1216 228 54 2668 3861 51780254 51781420 1.730000e-144 523.0
2 TraesCS7D01G385300 chr7D 83.106 367 40 8 1 362 414493970 414493621 1.130000e-81 315.0
3 TraesCS7D01G385300 chr7D 83.673 98 12 4 442 538 506676657 506676563 7.460000e-14 89.8
4 TraesCS7D01G385300 chr7A 90.390 3361 200 52 842 4122 565797253 565800570 0.000000e+00 4303.0
5 TraesCS7D01G385300 chr7A 90.619 565 46 6 4397 4955 565800791 565801354 0.000000e+00 743.0
6 TraesCS7D01G385300 chr7A 87.239 431 47 7 371 801 565795479 565795901 8.140000e-133 484.0
7 TraesCS7D01G385300 chr7A 81.667 480 71 11 2863 3340 54722141 54722605 3.060000e-102 383.0
8 TraesCS7D01G385300 chr7A 84.688 320 34 5 1 319 67153347 67153042 6.800000e-79 305.0
9 TraesCS7D01G385300 chr7A 86.667 270 33 3 142 409 565795218 565795486 4.090000e-76 296.0
10 TraesCS7D01G385300 chr7A 92.754 207 12 3 4202 4407 565800568 565800772 4.090000e-76 296.0
11 TraesCS7D01G385300 chr7A 85.606 264 35 3 117 378 657524610 657524348 1.920000e-69 274.0
12 TraesCS7D01G385300 chr7A 81.379 145 20 5 4998 5136 81128460 81128603 1.590000e-20 111.0
13 TraesCS7D01G385300 chr7A 91.892 37 3 0 382 418 424321665 424321629 1.000000e-02 52.8
14 TraesCS7D01G385300 chr7B 90.204 2450 156 47 388 2789 527855471 527857884 0.000000e+00 3118.0
15 TraesCS7D01G385300 chr7B 87.536 1035 37 36 3156 4110 527858593 527859615 0.000000e+00 1112.0
16 TraesCS7D01G385300 chr7B 87.778 810 75 12 4200 5000 527859632 527860426 0.000000e+00 926.0
17 TraesCS7D01G385300 chr7B 93.651 315 14 2 2855 3163 527857909 527858223 2.950000e-127 466.0
18 TraesCS7D01G385300 chr7B 83.947 380 44 8 1 378 34416623 34416259 1.110000e-91 348.0
19 TraesCS7D01G385300 chr7B 84.314 102 12 4 457 557 16178239 16178141 4.460000e-16 97.1
20 TraesCS7D01G385300 chr7B 92.683 41 3 0 4121 4161 731123262 731123302 5.850000e-05 60.2
21 TraesCS7D01G385300 chr3D 79.178 730 103 35 2640 3341 4291796 4292504 1.370000e-125 460.0
22 TraesCS7D01G385300 chr3D 84.527 349 38 6 32 378 613604877 613604543 1.120000e-86 331.0
23 TraesCS7D01G385300 chr3D 82.776 389 42 12 1 385 549526094 549526461 1.880000e-84 324.0
24 TraesCS7D01G385300 chr3D 81.250 144 22 4 4998 5136 193512094 193511951 1.590000e-20 111.0
25 TraesCS7D01G385300 chr3D 90.566 53 5 0 504 556 14452599 14452547 2.700000e-08 71.3
26 TraesCS7D01G385300 chr3A 77.057 863 126 45 2640 3473 9882220 9883039 1.080000e-116 431.0
27 TraesCS7D01G385300 chr3A 84.031 382 43 6 1 378 127170086 127169719 8.620000e-93 351.0
28 TraesCS7D01G385300 chr3A 80.093 432 64 17 2669 3088 9932609 9933030 8.800000e-78 302.0
29 TraesCS7D01G385300 chr3A 78.378 222 45 1 3586 3804 9933597 9933818 2.030000e-29 141.0
30 TraesCS7D01G385300 chr3A 74.879 207 45 7 4998 5199 466307856 466307652 2.680000e-13 87.9
31 TraesCS7D01G385300 chr5B 80.385 571 81 17 1 559 381055556 381056107 6.520000e-109 405.0
32 TraesCS7D01G385300 chr5B 96.226 212 4 2 5196 5407 666299923 666300130 1.440000e-90 344.0
33 TraesCS7D01G385300 chr5B 93.578 109 6 1 1 108 86616580 86616688 1.560000e-35 161.0
34 TraesCS7D01G385300 chr5B 91.111 45 4 0 4123 4167 360464190 360464234 1.630000e-05 62.1
35 TraesCS7D01G385300 chrUn 77.424 722 123 29 2639 3341 35374055 35373355 1.410000e-105 394.0
36 TraesCS7D01G385300 chrUn 77.865 637 101 31 2869 3485 35856071 35855455 5.150000e-95 359.0
37 TraesCS7D01G385300 chrUn 78.025 628 98 31 2866 3473 299959367 299959974 5.150000e-95 359.0
38 TraesCS7D01G385300 chrUn 81.517 211 39 0 2311 2521 35374326 35374116 2.000000e-39 174.0
39 TraesCS7D01G385300 chrUn 90.909 44 4 0 4121 4164 300838269 300838226 5.850000e-05 60.2
40 TraesCS7D01G385300 chrUn 90.909 44 4 0 4121 4164 330504972 330504929 5.850000e-05 60.2
41 TraesCS7D01G385300 chr3B 77.424 722 123 29 2639 3341 6557001 6557701 1.410000e-105 394.0
42 TraesCS7D01G385300 chr3B 77.358 742 118 35 2635 3349 6679133 6679851 1.410000e-105 394.0
43 TraesCS7D01G385300 chr3B 81.731 208 38 0 2311 2518 6556730 6556937 2.000000e-39 174.0
44 TraesCS7D01G385300 chr4B 85.156 384 48 4 1 382 468644472 468644848 8.500000e-103 385.0
45 TraesCS7D01G385300 chr4A 81.628 479 75 11 2863 3340 666149955 666150421 8.500000e-103 385.0
46 TraesCS7D01G385300 chr4A 96.714 213 7 0 5195 5407 688401898 688402110 6.660000e-94 355.0
47 TraesCS7D01G385300 chr4A 81.944 144 21 4 4998 5136 703259001 703258858 3.420000e-22 117.0
48 TraesCS7D01G385300 chr4A 78.378 148 21 8 4994 5136 633073592 633073733 9.650000e-13 86.1
49 TraesCS7D01G385300 chr4D 97.222 216 5 1 5191 5406 445102947 445103161 1.110000e-96 364.0
50 TraesCS7D01G385300 chr4D 97.196 214 6 0 5194 5407 445104272 445104485 3.980000e-96 363.0
51 TraesCS7D01G385300 chr5D 79.505 566 71 21 1 538 537082010 537082558 1.430000e-95 361.0
52 TraesCS7D01G385300 chr5D 96.190 210 8 0 5198 5407 511722542 511722751 1.440000e-90 344.0
53 TraesCS7D01G385300 chr5D 80.274 365 40 11 1 362 392068492 392068827 4.180000e-61 246.0
54 TraesCS7D01G385300 chr5D 81.323 257 29 5 1 255 537103386 537103147 1.990000e-44 191.0
55 TraesCS7D01G385300 chr5D 94.872 39 2 0 370 408 60987170 60987208 1.630000e-05 62.1
56 TraesCS7D01G385300 chr6B 97.608 209 5 0 5199 5407 372307502 372307294 5.150000e-95 359.0
57 TraesCS7D01G385300 chr6B 95.794 214 9 0 5194 5407 372305906 372306119 4.010000e-91 346.0
58 TraesCS7D01G385300 chr2D 96.682 211 7 0 5197 5407 167767316 167767106 8.620000e-93 351.0
59 TraesCS7D01G385300 chr2D 82.105 380 51 8 1 378 587269583 587269219 5.260000e-80 309.0
60 TraesCS7D01G385300 chr2D 81.982 111 14 6 4996 5102 158246201 158246093 7.460000e-14 89.8
61 TraesCS7D01G385300 chr2B 96.244 213 7 1 5196 5407 71363743 71363531 1.110000e-91 348.0
62 TraesCS7D01G385300 chr2B 83.684 380 46 4 1 378 158630121 158629756 1.440000e-90 344.0
63 TraesCS7D01G385300 chr2B 91.111 45 4 0 4123 4167 71242828 71242784 1.630000e-05 62.1
64 TraesCS7D01G385300 chr2B 75.172 145 27 9 357 497 200039423 200039284 5.850000e-05 60.2
65 TraesCS7D01G385300 chr2B 89.362 47 4 1 4121 4167 772185495 772185450 2.100000e-04 58.4
66 TraesCS7D01G385300 chr1D 86.614 254 25 5 134 380 413403094 413403345 6.900000e-69 272.0
67 TraesCS7D01G385300 chr1D 81.921 177 25 4 381 557 413403417 413403586 5.650000e-30 143.0
68 TraesCS7D01G385300 chr1B 83.158 190 26 6 370 557 557513729 557513914 9.310000e-38 169.0
69 TraesCS7D01G385300 chr1B 82.069 145 19 5 4998 5136 154599315 154599458 3.420000e-22 117.0
70 TraesCS7D01G385300 chr1B 88.136 59 7 0 460 518 614189947 614189889 2.700000e-08 71.3
71 TraesCS7D01G385300 chr6D 74.163 209 43 11 4998 5198 301892909 301893114 5.810000e-10 76.8
72 TraesCS7D01G385300 chr1A 82.105 95 12 4 460 552 89597954 89597863 5.810000e-10 76.8
73 TraesCS7D01G385300 chr1A 91.837 49 3 1 4123 4170 396109402 396109354 3.500000e-07 67.6
74 TraesCS7D01G385300 chr1A 90.196 51 4 1 4118 4167 541389000 541388950 1.260000e-06 65.8
75 TraesCS7D01G385300 chr6A 76.389 144 27 7 4998 5135 523245762 523245904 2.700000e-08 71.3
76 TraesCS7D01G385300 chr5A 90.566 53 5 0 504 556 565625811 565625863 2.700000e-08 71.3
77 TraesCS7D01G385300 chr2A 90.698 43 3 1 4113 4155 590638671 590638630 7.570000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G385300 chr7D 499883716 499889122 5406 False 9985.0 9985 100.00000 1 5407 1 chr7D.!!$F2 5406
1 TraesCS7D01G385300 chr7D 51780254 51781420 1166 False 523.0 523 75.41100 2668 3861 1 chr7D.!!$F1 1193
2 TraesCS7D01G385300 chr7A 565795218 565801354 6136 False 1224.4 4303 89.53380 142 4955 5 chr7A.!!$F3 4813
3 TraesCS7D01G385300 chr7B 527855471 527860426 4955 False 1405.5 3118 89.79225 388 5000 4 chr7B.!!$F2 4612
4 TraesCS7D01G385300 chr3D 4291796 4292504 708 False 460.0 460 79.17800 2640 3341 1 chr3D.!!$F1 701
5 TraesCS7D01G385300 chr3A 9882220 9883039 819 False 431.0 431 77.05700 2640 3473 1 chr3A.!!$F1 833
6 TraesCS7D01G385300 chr3A 9932609 9933818 1209 False 221.5 302 79.23550 2669 3804 2 chr3A.!!$F2 1135
7 TraesCS7D01G385300 chr5B 381055556 381056107 551 False 405.0 405 80.38500 1 559 1 chr5B.!!$F3 558
8 TraesCS7D01G385300 chrUn 35855455 35856071 616 True 359.0 359 77.86500 2869 3485 1 chrUn.!!$R1 616
9 TraesCS7D01G385300 chrUn 299959367 299959974 607 False 359.0 359 78.02500 2866 3473 1 chrUn.!!$F1 607
10 TraesCS7D01G385300 chrUn 35373355 35374326 971 True 284.0 394 79.47050 2311 3341 2 chrUn.!!$R4 1030
11 TraesCS7D01G385300 chr3B 6679133 6679851 718 False 394.0 394 77.35800 2635 3349 1 chr3B.!!$F1 714
12 TraesCS7D01G385300 chr3B 6556730 6557701 971 False 284.0 394 79.57750 2311 3341 2 chr3B.!!$F2 1030
13 TraesCS7D01G385300 chr4D 445102947 445104485 1538 False 363.5 364 97.20900 5191 5407 2 chr4D.!!$F1 216
14 TraesCS7D01G385300 chr5D 537082010 537082558 548 False 361.0 361 79.50500 1 538 1 chr5D.!!$F4 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 860 0.179134 TTGAAACCGGGTTGCGTTTG 60.179 50.000 11.03 0.0 32.46 2.93 F
2128 3545 0.319555 GACACGGCAGTAGTTGAGCA 60.320 55.000 0.00 0.0 0.00 4.26 F
2129 3546 0.319900 ACACGGCAGTAGTTGAGCAG 60.320 55.000 0.00 0.0 0.00 4.24 F
2131 3548 0.393077 ACGGCAGTAGTTGAGCAGTT 59.607 50.000 0.00 0.0 32.96 3.16 F
2843 4273 0.729116 GGTGTCATGCCATCGTTGAG 59.271 55.000 0.00 0.0 0.00 3.02 F
2845 4275 1.129251 GTGTCATGCCATCGTTGAGTG 59.871 52.381 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2309 3729 0.545309 TCCCTCCCTGTGACCTGAAG 60.545 60.000 0.0 0.0 0.00 3.02 R
4053 6057 0.107831 TTGAACAAGCTGTAGGGCGT 59.892 50.000 0.0 0.0 37.29 5.68 R
4125 6138 5.482878 AGACACTTATTTTAGGACGAAGGGA 59.517 40.000 0.0 0.0 0.00 4.20 R
4126 6139 5.731591 AGACACTTATTTTAGGACGAAGGG 58.268 41.667 0.0 0.0 0.00 3.95 R
4341 6354 0.889306 AAGTAGCTGTCCCAGTCGAC 59.111 55.000 7.7 7.7 33.43 4.20 R
4824 6875 1.072331 GGATACATTGGATGGCGGTCT 59.928 52.381 0.0 0.0 33.60 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.096081 ACAAGAAGCAGCTAGAAATGATGC 59.904 41.667 0.00 0.00 45.82 3.91
27 28 2.723322 AGCAGCTAGAAATGATGCCA 57.277 45.000 0.00 0.00 46.54 4.92
58 59 2.032681 AGTTCTGCAGGCCCGTTC 59.967 61.111 15.13 0.00 0.00 3.95
99 101 3.054728 TGCTAAACAATGGATCCGGAGAA 60.055 43.478 11.34 0.00 0.00 2.87
102 104 3.721087 AACAATGGATCCGGAGAACTT 57.279 42.857 11.34 0.00 0.00 2.66
103 105 2.991250 ACAATGGATCCGGAGAACTTG 58.009 47.619 11.34 13.43 0.00 3.16
106 108 0.613260 TGGATCCGGAGAACTTGTGG 59.387 55.000 11.34 0.00 0.00 4.17
139 141 6.716628 GGGGTTATGATATGTTGTGTGATCAT 59.283 38.462 0.00 0.00 40.99 2.45
140 142 7.308770 GGGGTTATGATATGTTGTGTGATCATG 60.309 40.741 0.00 0.00 38.98 3.07
141 143 7.308770 GGGTTATGATATGTTGTGTGATCATGG 60.309 40.741 0.00 0.00 38.98 3.66
142 144 7.445096 GGTTATGATATGTTGTGTGATCATGGA 59.555 37.037 0.00 0.00 38.98 3.41
143 145 9.006839 GTTATGATATGTTGTGTGATCATGGAT 57.993 33.333 0.00 0.00 38.98 3.41
144 146 7.683437 ATGATATGTTGTGTGATCATGGATC 57.317 36.000 0.00 0.00 37.58 3.36
145 147 6.593807 TGATATGTTGTGTGATCATGGATCA 58.406 36.000 0.00 4.86 45.35 2.92
232 234 7.827236 ACATGGTTGATCCTATCGAACTTTTAA 59.173 33.333 0.00 0.00 37.07 1.52
234 236 8.801882 TGGTTGATCCTATCGAACTTTTAAAT 57.198 30.769 0.00 0.00 37.07 1.40
331 333 6.257994 TGGAGGAAGATCTAATTGAGCATT 57.742 37.500 0.00 0.00 32.67 3.56
335 337 7.716998 GGAGGAAGATCTAATTGAGCATTTGTA 59.283 37.037 0.00 0.00 32.67 2.41
347 350 2.163613 AGCATTTGTAGCGGTTAAAGGC 59.836 45.455 19.16 19.16 40.26 4.35
368 371 3.363970 GCGACAACAATGTTGGAGTGTAG 60.364 47.826 27.15 10.33 40.74 2.74
378 404 9.344772 ACAATGTTGGAGTGTAGTATTTAAACA 57.655 29.630 0.00 0.00 28.87 2.83
514 572 0.894184 TCTTCCTCTGTTCGCGGACT 60.894 55.000 20.15 0.00 0.00 3.85
515 573 0.456995 CTTCCTCTGTTCGCGGACTC 60.457 60.000 20.15 0.00 0.00 3.36
539 597 1.199097 CGGGAAGAAATTTGTGGGTCG 59.801 52.381 0.00 0.00 0.00 4.79
577 635 8.207545 GTCCTTATTGATCTAAGTGGTTGAGAT 58.792 37.037 0.00 0.00 32.57 2.75
594 653 8.786898 TGGTTGAGATGAAAGAAACTATTTGAG 58.213 33.333 0.00 0.00 0.00 3.02
641 700 6.613271 ACCTCATCTACCTGTGTTATTGATCT 59.387 38.462 0.00 0.00 0.00 2.75
642 701 7.785028 ACCTCATCTACCTGTGTTATTGATCTA 59.215 37.037 0.00 0.00 0.00 1.98
801 860 0.179134 TTGAAACCGGGTTGCGTTTG 60.179 50.000 11.03 0.00 32.46 2.93
1122 2492 0.739813 GCACGGCTAATCGTTCAGGT 60.740 55.000 0.00 0.00 41.86 4.00
1165 2535 1.135546 CATCTCAGAGGGCTATACGCG 60.136 57.143 3.53 3.53 40.44 6.01
1240 2611 3.530535 GATGTCAAGAAGCTCTTCCTCC 58.469 50.000 6.04 0.00 40.33 4.30
1298 2669 3.444034 CGGATTCAGACTGAGGTGAAGTA 59.556 47.826 5.10 0.00 36.16 2.24
1313 2684 6.963322 AGGTGAAGTATTTCATTCTAGCCTT 58.037 36.000 3.79 0.00 44.62 4.35
1314 2685 7.051000 AGGTGAAGTATTTCATTCTAGCCTTC 58.949 38.462 3.79 0.00 44.62 3.46
1321 2700 6.782082 ATTTCATTCTAGCCTTCCTTTTCC 57.218 37.500 0.00 0.00 0.00 3.13
1324 2703 2.762535 TCTAGCCTTCCTTTTCCACG 57.237 50.000 0.00 0.00 0.00 4.94
1333 2712 2.766313 TCCTTTTCCACGACATGTCTG 58.234 47.619 22.95 18.21 0.00 3.51
1341 2727 2.029380 CCACGACATGTCTGGTAACTCA 60.029 50.000 24.75 0.00 37.61 3.41
1342 2728 3.368427 CCACGACATGTCTGGTAACTCAT 60.368 47.826 24.75 3.18 37.61 2.90
1343 2729 3.614176 CACGACATGTCTGGTAACTCATG 59.386 47.826 22.95 5.92 42.15 3.07
1344 2730 3.190079 CGACATGTCTGGTAACTCATGG 58.810 50.000 22.95 0.00 41.42 3.66
1345 2731 3.368427 CGACATGTCTGGTAACTCATGGT 60.368 47.826 22.95 0.00 41.42 3.55
1376 2768 3.574284 TCATCGCCATTTTGTTCTTGG 57.426 42.857 0.00 0.00 0.00 3.61
1412 2804 5.542779 TGCTTAGTTTCTGAACTTCTCTCC 58.457 41.667 0.00 0.00 43.48 3.71
1416 2808 3.060602 GTTTCTGAACTTCTCTCCACCG 58.939 50.000 0.00 0.00 32.91 4.94
1419 2811 2.698797 TCTGAACTTCTCTCCACCGTTT 59.301 45.455 0.00 0.00 0.00 3.60
1444 2836 2.252714 ACAGAGGGAACTTCTCTCCAC 58.747 52.381 14.18 0.00 45.09 4.02
1454 2846 4.550076 ACTTCTCTCCACCATTCAAGAG 57.450 45.455 0.00 0.00 37.25 2.85
1456 2848 4.349342 ACTTCTCTCCACCATTCAAGAGTT 59.651 41.667 0.00 0.00 37.21 3.01
1461 2853 7.786030 TCTCTCCACCATTCAAGAGTTAATAG 58.214 38.462 0.00 0.00 37.21 1.73
1500 2901 7.028962 TCAAGAATAACTAATTGTGTGCATGC 58.971 34.615 11.82 11.82 0.00 4.06
1515 2916 1.195448 GCATGCGCACACATATAGGTC 59.805 52.381 14.90 0.00 38.36 3.85
1521 2922 2.726241 CGCACACATATAGGTCATGTCG 59.274 50.000 0.00 0.00 34.39 4.35
1544 2945 0.642291 CTCATACTGCACGCAACTCG 59.358 55.000 0.00 0.00 45.38 4.18
1585 2988 3.038710 CGAAGCTTTGCTCACAAAAGAC 58.961 45.455 0.00 0.00 44.90 3.01
1628 3031 7.148069 CCCTTTTGGTTTAAAGTAGATAGGCAG 60.148 40.741 0.00 0.00 38.10 4.85
1646 3051 9.167311 GATAGGCAGTTGATTAAAGAAAAGAGA 57.833 33.333 0.00 0.00 0.00 3.10
1647 3052 7.446001 AGGCAGTTGATTAAAGAAAAGAGAG 57.554 36.000 0.00 0.00 0.00 3.20
1648 3053 7.227156 AGGCAGTTGATTAAAGAAAAGAGAGA 58.773 34.615 0.00 0.00 0.00 3.10
1649 3054 7.174080 AGGCAGTTGATTAAAGAAAAGAGAGAC 59.826 37.037 0.00 0.00 0.00 3.36
1650 3055 7.174080 GGCAGTTGATTAAAGAAAAGAGAGACT 59.826 37.037 0.00 0.00 0.00 3.24
1651 3056 9.209175 GCAGTTGATTAAAGAAAAGAGAGACTA 57.791 33.333 0.00 0.00 0.00 2.59
1677 3082 6.323996 ACTTCTTTTTCGAAAAGGAGGGAAAT 59.676 34.615 33.03 18.74 37.22 2.17
1700 3105 1.269936 CCCAGCCTCAGCAACAAAAAG 60.270 52.381 0.00 0.00 43.56 2.27
1709 3114 4.511527 TCAGCAACAAAAAGAATTTGGCA 58.488 34.783 5.96 0.00 39.02 4.92
1718 3123 6.017687 ACAAAAAGAATTTGGCAGAAAGATGC 60.018 34.615 5.96 0.00 41.05 3.91
1728 3133 5.252547 TGGCAGAAAGATGCTTGTTGTATA 58.747 37.500 0.00 0.00 45.75 1.47
1742 3147 9.264719 TGCTTGTTGTATAGATCAATATCACAG 57.735 33.333 0.00 0.00 34.28 3.66
1743 3148 9.481340 GCTTGTTGTATAGATCAATATCACAGA 57.519 33.333 0.00 0.00 34.28 3.41
2012 3429 3.748568 CCTTTCAGTGGAGTAAAGACAGC 59.251 47.826 4.12 0.00 33.05 4.40
2013 3430 2.724977 TCAGTGGAGTAAAGACAGCG 57.275 50.000 0.00 0.00 0.00 5.18
2014 3431 1.961394 TCAGTGGAGTAAAGACAGCGT 59.039 47.619 0.00 0.00 0.00 5.07
2015 3432 3.151554 TCAGTGGAGTAAAGACAGCGTA 58.848 45.455 0.00 0.00 0.00 4.42
2016 3433 3.570975 TCAGTGGAGTAAAGACAGCGTAA 59.429 43.478 0.00 0.00 0.00 3.18
2017 3434 4.219944 TCAGTGGAGTAAAGACAGCGTAAT 59.780 41.667 0.00 0.00 0.00 1.89
2049 3466 2.667481 CAGTGGCAAATTACCGCAAATG 59.333 45.455 12.18 0.49 40.28 2.32
2116 3533 1.134818 TGTGAGATACATGGACACGGC 60.135 52.381 0.00 0.00 33.42 5.68
2127 3544 1.014564 GGACACGGCAGTAGTTGAGC 61.015 60.000 0.00 0.00 0.00 4.26
2128 3545 0.319555 GACACGGCAGTAGTTGAGCA 60.320 55.000 0.00 0.00 0.00 4.26
2129 3546 0.319900 ACACGGCAGTAGTTGAGCAG 60.320 55.000 0.00 0.00 0.00 4.24
2130 3547 0.319900 CACGGCAGTAGTTGAGCAGT 60.320 55.000 0.00 0.00 37.16 4.40
2131 3548 0.393077 ACGGCAGTAGTTGAGCAGTT 59.607 50.000 0.00 0.00 32.96 3.16
2132 3549 0.792640 CGGCAGTAGTTGAGCAGTTG 59.207 55.000 0.00 0.00 0.00 3.16
2133 3550 1.605457 CGGCAGTAGTTGAGCAGTTGA 60.605 52.381 0.00 0.00 0.00 3.18
2134 3551 2.072298 GGCAGTAGTTGAGCAGTTGAG 58.928 52.381 0.00 0.00 0.00 3.02
2135 3552 1.462670 GCAGTAGTTGAGCAGTTGAGC 59.537 52.381 0.00 0.00 0.00 4.26
2137 3554 2.735663 CAGTAGTTGAGCAGTTGAGCTG 59.264 50.000 0.00 0.00 46.75 4.24
2138 3555 2.366916 AGTAGTTGAGCAGTTGAGCTGT 59.633 45.455 0.00 0.00 46.75 4.40
2139 3556 1.590932 AGTTGAGCAGTTGAGCTGTG 58.409 50.000 0.00 0.00 46.75 3.66
2156 3573 1.005748 TGTCTCCAGCGCACTTGAG 60.006 57.895 11.47 9.65 37.09 3.02
2206 3623 8.858003 TTTCTGAATCTAGTAATAAGTCTGCG 57.142 34.615 0.00 0.00 0.00 5.18
2277 3697 8.138712 AGTAATTCTAGAACTGCATAGTACTGC 58.861 37.037 7.48 2.51 42.62 4.40
2306 3726 3.529634 TTTATGAACGCTGTTTCGGTG 57.470 42.857 0.00 0.00 0.00 4.94
2369 3789 5.010708 AGAAAAACATGGTATGGGGTTCT 57.989 39.130 0.00 0.00 33.60 3.01
2617 4040 9.836864 TGCATGTATTTGTAAGAGATTAGTGAT 57.163 29.630 0.00 0.00 0.00 3.06
2637 4060 4.749598 TGATACAACATATACGCTGCTTGG 59.250 41.667 0.00 0.00 0.00 3.61
2654 4077 7.483307 GCTGCTTGGAATAACTGATCAAAATA 58.517 34.615 0.00 0.00 0.00 1.40
2710 4134 2.742856 CGATGCTAATGTCTTGGGAGCA 60.743 50.000 0.00 0.00 46.42 4.26
2792 4219 7.822161 TCAACTGGTGGGAATCAATAATATG 57.178 36.000 0.00 0.00 0.00 1.78
2793 4220 6.265196 TCAACTGGTGGGAATCAATAATATGC 59.735 38.462 0.00 0.00 0.00 3.14
2834 4264 6.262944 TGATCTATGTATTTTGGTGTCATGCC 59.737 38.462 0.00 0.00 0.00 4.40
2836 4266 6.128486 TCTATGTATTTTGGTGTCATGCCAT 58.872 36.000 0.00 0.00 35.71 4.40
2837 4267 4.717233 TGTATTTTGGTGTCATGCCATC 57.283 40.909 0.00 0.00 35.71 3.51
2838 4268 2.945447 ATTTTGGTGTCATGCCATCG 57.055 45.000 0.00 0.00 35.71 3.84
2839 4269 1.614996 TTTTGGTGTCATGCCATCGT 58.385 45.000 0.00 0.00 35.71 3.73
2840 4270 1.614996 TTTGGTGTCATGCCATCGTT 58.385 45.000 0.00 0.00 35.71 3.85
2841 4271 0.880441 TTGGTGTCATGCCATCGTTG 59.120 50.000 0.00 0.00 35.71 4.10
2843 4273 0.729116 GGTGTCATGCCATCGTTGAG 59.271 55.000 0.00 0.00 0.00 3.02
2845 4275 1.129251 GTGTCATGCCATCGTTGAGTG 59.871 52.381 0.00 0.00 0.00 3.51
2848 4282 2.348666 GTCATGCCATCGTTGAGTGTAC 59.651 50.000 0.00 0.00 0.00 2.90
2933 4386 9.401058 CTAATACCAGAGAAACCATTCTTGATT 57.599 33.333 0.00 0.00 45.91 2.57
3350 5205 4.713792 AGGAATCAGGTGACAGAAACTT 57.286 40.909 0.00 0.00 0.00 2.66
3353 5208 6.234177 AGGAATCAGGTGACAGAAACTTAAG 58.766 40.000 0.00 0.00 0.00 1.85
3354 5209 6.043243 AGGAATCAGGTGACAGAAACTTAAGA 59.957 38.462 10.09 0.00 0.00 2.10
3356 5211 5.871396 TCAGGTGACAGAAACTTAAGACT 57.129 39.130 10.09 2.82 0.00 3.24
3357 5212 5.844004 TCAGGTGACAGAAACTTAAGACTC 58.156 41.667 10.09 5.03 0.00 3.36
3358 5213 5.598830 TCAGGTGACAGAAACTTAAGACTCT 59.401 40.000 10.09 7.33 0.00 3.24
3359 5214 5.694006 CAGGTGACAGAAACTTAAGACTCTG 59.306 44.000 24.54 24.54 40.92 3.35
3361 5216 6.049790 GGTGACAGAAACTTAAGACTCTGTT 58.950 40.000 28.66 19.40 46.49 3.16
3367 5222 8.669243 ACAGAAACTTAAGACTCTGTTTTCTTG 58.331 33.333 25.43 16.48 44.71 3.02
3377 5233 9.794685 AAGACTCTGTTTTCTTGATTTTTCTTC 57.205 29.630 0.00 0.00 30.65 2.87
3378 5234 9.183368 AGACTCTGTTTTCTTGATTTTTCTTCT 57.817 29.630 0.00 0.00 0.00 2.85
3381 5237 8.841444 TCTGTTTTCTTGATTTTTCTTCTTCG 57.159 30.769 0.00 0.00 0.00 3.79
3411 5294 3.354948 ACAACAGCTAGCATGGATTGA 57.645 42.857 18.83 0.00 0.00 2.57
3413 5296 3.441572 ACAACAGCTAGCATGGATTGAAC 59.558 43.478 18.83 0.00 0.00 3.18
3550 5460 6.539173 ACAAAGTTACCCTGATCAATGTACA 58.461 36.000 0.00 0.00 0.00 2.90
3552 5462 7.121168 ACAAAGTTACCCTGATCAATGTACATG 59.879 37.037 9.63 4.13 0.00 3.21
3553 5463 6.313519 AGTTACCCTGATCAATGTACATGT 57.686 37.500 9.63 2.69 0.00 3.21
3554 5464 7.432148 AGTTACCCTGATCAATGTACATGTA 57.568 36.000 9.63 0.08 0.00 2.29
3556 5466 7.933577 AGTTACCCTGATCAATGTACATGTATG 59.066 37.037 9.63 4.33 0.00 2.39
3558 5468 5.065235 CCCTGATCAATGTACATGTATGCA 58.935 41.667 9.63 3.66 0.00 3.96
3956 5960 2.941720 GTTGGATGGAGAACAGATGCTC 59.058 50.000 0.00 0.00 0.00 4.26
4135 6148 6.897706 AGTAAGATAATACTCCCTTCGTCC 57.102 41.667 0.00 0.00 30.26 4.79
4136 6149 6.612741 AGTAAGATAATACTCCCTTCGTCCT 58.387 40.000 0.00 0.00 30.26 3.85
4137 6150 7.753630 AGTAAGATAATACTCCCTTCGTCCTA 58.246 38.462 0.00 0.00 30.26 2.94
4138 6151 8.223330 AGTAAGATAATACTCCCTTCGTCCTAA 58.777 37.037 0.00 0.00 30.26 2.69
4139 6152 7.909485 AAGATAATACTCCCTTCGTCCTAAA 57.091 36.000 0.00 0.00 0.00 1.85
4140 6153 7.909485 AGATAATACTCCCTTCGTCCTAAAA 57.091 36.000 0.00 0.00 0.00 1.52
4141 6154 8.493787 AGATAATACTCCCTTCGTCCTAAAAT 57.506 34.615 0.00 0.00 0.00 1.82
4142 6155 9.597681 AGATAATACTCCCTTCGTCCTAAAATA 57.402 33.333 0.00 0.00 0.00 1.40
4145 6158 7.672122 ATACTCCCTTCGTCCTAAAATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
4146 6159 5.731591 ACTCCCTTCGTCCTAAAATAAGTG 58.268 41.667 0.00 0.00 0.00 3.16
4147 6160 5.247792 ACTCCCTTCGTCCTAAAATAAGTGT 59.752 40.000 0.00 0.00 0.00 3.55
4148 6161 5.727434 TCCCTTCGTCCTAAAATAAGTGTC 58.273 41.667 0.00 0.00 0.00 3.67
4149 6162 5.482878 TCCCTTCGTCCTAAAATAAGTGTCT 59.517 40.000 0.00 0.00 0.00 3.41
4150 6163 6.013984 TCCCTTCGTCCTAAAATAAGTGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
4151 6164 7.178983 TCCCTTCGTCCTAAAATAAGTGTCTTA 59.821 37.037 0.00 0.00 0.00 2.10
4152 6165 7.820872 CCCTTCGTCCTAAAATAAGTGTCTTAA 59.179 37.037 0.00 0.00 0.00 1.85
4153 6166 9.379791 CCTTCGTCCTAAAATAAGTGTCTTAAT 57.620 33.333 0.00 0.00 0.00 1.40
4192 6205 8.897872 AAAGTTAAGACTTATTTTGAGACGGA 57.102 30.769 0.00 0.00 45.18 4.69
4193 6206 8.535690 AAGTTAAGACTTATTTTGAGACGGAG 57.464 34.615 0.00 0.00 44.13 4.63
4194 6207 7.097834 AGTTAAGACTTATTTTGAGACGGAGG 58.902 38.462 0.00 0.00 29.87 4.30
4195 6208 4.473477 AGACTTATTTTGAGACGGAGGG 57.527 45.455 0.00 0.00 0.00 4.30
4196 6209 4.094476 AGACTTATTTTGAGACGGAGGGA 58.906 43.478 0.00 0.00 0.00 4.20
4197 6210 4.530946 AGACTTATTTTGAGACGGAGGGAA 59.469 41.667 0.00 0.00 0.00 3.97
4198 6211 5.189934 AGACTTATTTTGAGACGGAGGGAAT 59.810 40.000 0.00 0.00 0.00 3.01
4206 6219 1.213926 AGACGGAGGGAATAGTACGGT 59.786 52.381 0.00 0.00 0.00 4.83
4218 6231 6.161381 GGAATAGTACGGTTCTTTGACTTGA 58.839 40.000 11.38 0.00 0.00 3.02
4219 6232 6.817140 GGAATAGTACGGTTCTTTGACTTGAT 59.183 38.462 11.38 0.00 0.00 2.57
4303 6316 4.292186 AGAAGGAGCAAGATAGCAACAA 57.708 40.909 0.00 0.00 36.85 2.83
4341 6354 2.309528 TGATTTCGATCCCAAGTCCG 57.690 50.000 0.00 0.00 0.00 4.79
4407 6420 3.125146 GCTCAAGTACATGCGTGATTGAA 59.875 43.478 14.17 4.67 31.08 2.69
4414 6456 9.321590 CAAGTACATGCGTGATTGAATTATATG 57.678 33.333 14.17 0.00 0.00 1.78
4441 6483 2.625790 ACGCAAATTTCCAGCCAAGTTA 59.374 40.909 0.00 0.00 0.00 2.24
4442 6484 2.986479 CGCAAATTTCCAGCCAAGTTAC 59.014 45.455 0.00 0.00 0.00 2.50
4462 6504 8.974060 AGTTACTAGAACCACTGAAATTTGAA 57.026 30.769 0.00 0.00 0.00 2.69
4519 6562 0.908910 TTGATCACCATGCCTACCGT 59.091 50.000 0.00 0.00 0.00 4.83
4560 6603 6.095440 TCCCTTTGTTATGCAGCTCTTATTTC 59.905 38.462 0.00 0.00 0.00 2.17
4564 6607 9.415544 CTTTGTTATGCAGCTCTTATTTCTTTT 57.584 29.630 0.00 0.00 0.00 2.27
4566 6609 8.746922 TGTTATGCAGCTCTTATTTCTTTTTG 57.253 30.769 0.00 0.00 0.00 2.44
4569 6612 6.389830 TGCAGCTCTTATTTCTTTTTGTGA 57.610 33.333 0.00 0.00 0.00 3.58
4647 6694 2.538449 CACGGCCACGAATGTATTAGAC 59.462 50.000 2.24 0.00 44.60 2.59
4656 6703 7.621991 CCACGAATGTATTAGACAATGTCTTC 58.378 38.462 21.83 9.78 40.28 2.87
4752 6803 4.906618 ACAACCAACATCCGAAGAAGTAT 58.093 39.130 0.00 0.00 0.00 2.12
4757 6808 7.611213 ACCAACATCCGAAGAAGTATAAAAG 57.389 36.000 0.00 0.00 0.00 2.27
4796 6847 3.605634 TCACAACCAATCGATAACAGGG 58.394 45.455 0.00 0.00 0.00 4.45
4818 6869 9.645059 CAGGGTTACACTCATATACATAATCTG 57.355 37.037 0.00 0.00 0.00 2.90
4837 6888 3.452990 TCTGTTATTAGACCGCCATCCAA 59.547 43.478 0.00 0.00 0.00 3.53
4845 6896 0.843309 ACCGCCATCCAATGTATCCA 59.157 50.000 0.00 0.00 0.00 3.41
4850 6901 2.934887 CCATCCAATGTATCCAGTGCA 58.065 47.619 0.00 0.00 35.38 4.57
4857 6908 0.682292 TGTATCCAGTGCAACCGTCA 59.318 50.000 0.00 0.00 37.80 4.35
4858 6909 1.070914 TGTATCCAGTGCAACCGTCAA 59.929 47.619 0.00 0.00 37.80 3.18
4859 6910 1.463444 GTATCCAGTGCAACCGTCAAC 59.537 52.381 0.00 0.00 37.80 3.18
4899 6950 7.256083 CCATAGATGTCTGATTCTCCACACATA 60.256 40.741 0.00 0.00 0.00 2.29
4927 6978 4.958581 AGAGCATCATATACGGATCCATCA 59.041 41.667 13.41 0.00 37.82 3.07
4932 6983 6.422100 GCATCATATACGGATCCATCATGTAC 59.578 42.308 13.41 0.00 0.00 2.90
5000 7052 8.755941 GCAAGAAAATTGAAAGGTTTCTTCTAC 58.244 33.333 7.47 0.00 45.33 2.59
5003 7055 8.851145 AGAAAATTGAAAGGTTTCTTCTACTCC 58.149 33.333 4.19 0.00 38.18 3.85
5004 7056 7.526142 AAATTGAAAGGTTTCTTCTACTCCC 57.474 36.000 4.19 0.00 38.02 4.30
5005 7057 5.906772 TTGAAAGGTTTCTTCTACTCCCT 57.093 39.130 4.19 0.00 38.02 4.20
5006 7058 5.485209 TGAAAGGTTTCTTCTACTCCCTC 57.515 43.478 4.19 0.00 38.02 4.30
5007 7059 5.155905 TGAAAGGTTTCTTCTACTCCCTCT 58.844 41.667 4.19 0.00 38.02 3.69
5008 7060 5.012148 TGAAAGGTTTCTTCTACTCCCTCTG 59.988 44.000 4.19 0.00 38.02 3.35
5009 7061 4.134933 AGGTTTCTTCTACTCCCTCTGT 57.865 45.455 0.00 0.00 0.00 3.41
5010 7062 4.494591 AGGTTTCTTCTACTCCCTCTGTT 58.505 43.478 0.00 0.00 0.00 3.16
5011 7063 4.528987 AGGTTTCTTCTACTCCCTCTGTTC 59.471 45.833 0.00 0.00 0.00 3.18
5012 7064 4.322877 GGTTTCTTCTACTCCCTCTGTTCC 60.323 50.000 0.00 0.00 0.00 3.62
5013 7065 3.827817 TCTTCTACTCCCTCTGTTCCA 57.172 47.619 0.00 0.00 0.00 3.53
5014 7066 4.338795 TCTTCTACTCCCTCTGTTCCAT 57.661 45.455 0.00 0.00 0.00 3.41
5015 7067 5.467668 TCTTCTACTCCCTCTGTTCCATA 57.532 43.478 0.00 0.00 0.00 2.74
5016 7068 5.838955 TCTTCTACTCCCTCTGTTCCATAA 58.161 41.667 0.00 0.00 0.00 1.90
5017 7069 6.444704 TCTTCTACTCCCTCTGTTCCATAAT 58.555 40.000 0.00 0.00 0.00 1.28
5018 7070 6.325028 TCTTCTACTCCCTCTGTTCCATAATG 59.675 42.308 0.00 0.00 0.00 1.90
5019 7071 5.529289 TCTACTCCCTCTGTTCCATAATGT 58.471 41.667 0.00 0.00 0.00 2.71
5020 7072 6.679542 TCTACTCCCTCTGTTCCATAATGTA 58.320 40.000 0.00 0.00 0.00 2.29
5021 7073 5.878406 ACTCCCTCTGTTCCATAATGTAG 57.122 43.478 0.00 0.00 0.00 2.74
5022 7074 5.281314 ACTCCCTCTGTTCCATAATGTAGT 58.719 41.667 0.00 0.00 0.00 2.73
5023 7075 5.129485 ACTCCCTCTGTTCCATAATGTAGTG 59.871 44.000 0.00 0.00 0.00 2.74
5024 7076 4.130118 CCCTCTGTTCCATAATGTAGTGC 58.870 47.826 0.00 0.00 0.00 4.40
5025 7077 3.804325 CCTCTGTTCCATAATGTAGTGCG 59.196 47.826 0.00 0.00 0.00 5.34
5026 7078 4.433615 CTCTGTTCCATAATGTAGTGCGT 58.566 43.478 0.00 0.00 0.00 5.24
5027 7079 5.451381 CCTCTGTTCCATAATGTAGTGCGTA 60.451 44.000 0.00 0.00 0.00 4.42
5028 7080 6.156748 TCTGTTCCATAATGTAGTGCGTAT 57.843 37.500 0.00 0.00 0.00 3.06
5029 7081 7.279750 TCTGTTCCATAATGTAGTGCGTATA 57.720 36.000 0.00 0.00 0.00 1.47
5030 7082 7.892609 TCTGTTCCATAATGTAGTGCGTATAT 58.107 34.615 0.00 0.00 0.00 0.86
5031 7083 8.364894 TCTGTTCCATAATGTAGTGCGTATATT 58.635 33.333 0.00 0.00 0.00 1.28
5032 7084 8.896320 TGTTCCATAATGTAGTGCGTATATTT 57.104 30.769 0.00 0.00 0.00 1.40
5033 7085 8.984764 TGTTCCATAATGTAGTGCGTATATTTC 58.015 33.333 0.00 0.00 0.00 2.17
5034 7086 9.204570 GTTCCATAATGTAGTGCGTATATTTCT 57.795 33.333 0.00 0.00 0.00 2.52
5035 7087 9.772973 TTCCATAATGTAGTGCGTATATTTCTT 57.227 29.630 0.00 0.00 0.00 2.52
5036 7088 9.772973 TCCATAATGTAGTGCGTATATTTCTTT 57.227 29.630 0.00 0.00 0.00 2.52
5043 7095 9.865321 TGTAGTGCGTATATTTCTTTTAGAAGT 57.135 29.630 0.00 0.00 35.37 3.01
5045 7097 8.421673 AGTGCGTATATTTCTTTTAGAAGTCC 57.578 34.615 0.00 0.00 35.37 3.85
5046 7098 8.038944 AGTGCGTATATTTCTTTTAGAAGTCCA 58.961 33.333 0.00 0.00 35.37 4.02
5047 7099 8.662141 GTGCGTATATTTCTTTTAGAAGTCCAA 58.338 33.333 0.00 0.00 35.37 3.53
5048 7100 9.391006 TGCGTATATTTCTTTTAGAAGTCCAAT 57.609 29.630 0.00 0.00 35.37 3.16
5049 7101 9.651718 GCGTATATTTCTTTTAGAAGTCCAATG 57.348 33.333 0.00 0.00 35.37 2.82
5058 7110 9.403583 TCTTTTAGAAGTCCAATGTTACAAACT 57.596 29.630 0.00 0.00 34.41 2.66
5065 7117 9.959749 GAAGTCCAATGTTACAAACTTTAATCA 57.040 29.630 0.00 0.00 0.00 2.57
5125 7177 5.813080 CATATCATTGATGCATCATCCGT 57.187 39.130 29.13 17.65 39.87 4.69
5126 7178 6.190954 CATATCATTGATGCATCATCCGTT 57.809 37.500 29.13 16.70 39.87 4.44
5127 7179 7.311364 CATATCATTGATGCATCATCCGTTA 57.689 36.000 29.13 18.05 39.87 3.18
5128 7180 7.927048 CATATCATTGATGCATCATCCGTTAT 58.073 34.615 29.13 19.20 39.87 1.89
5129 7181 9.048446 CATATCATTGATGCATCATCCGTTATA 57.952 33.333 29.13 19.06 39.87 0.98
5130 7182 9.788889 ATATCATTGATGCATCATCCGTTATAT 57.211 29.630 29.13 20.14 39.87 0.86
5131 7183 7.926674 TCATTGATGCATCATCCGTTATATT 57.073 32.000 29.13 0.00 39.87 1.28
5132 7184 8.339344 TCATTGATGCATCATCCGTTATATTT 57.661 30.769 29.13 0.00 39.87 1.40
5133 7185 8.795513 TCATTGATGCATCATCCGTTATATTTT 58.204 29.630 29.13 0.00 39.87 1.82
5134 7186 9.069078 CATTGATGCATCATCCGTTATATTTTC 57.931 33.333 29.13 0.00 39.87 2.29
5135 7187 7.742556 TGATGCATCATCCGTTATATTTTCA 57.257 32.000 25.42 0.00 39.87 2.69
5136 7188 8.339344 TGATGCATCATCCGTTATATTTTCAT 57.661 30.769 25.42 0.00 39.87 2.57
5137 7189 8.238631 TGATGCATCATCCGTTATATTTTCATG 58.761 33.333 25.42 0.00 39.87 3.07
5138 7190 7.509141 TGCATCATCCGTTATATTTTCATGT 57.491 32.000 0.00 0.00 0.00 3.21
5139 7191 7.939782 TGCATCATCCGTTATATTTTCATGTT 58.060 30.769 0.00 0.00 0.00 2.71
5140 7192 7.861872 TGCATCATCCGTTATATTTTCATGTTG 59.138 33.333 0.00 0.00 0.00 3.33
5141 7193 7.862372 GCATCATCCGTTATATTTTCATGTTGT 59.138 33.333 0.00 0.00 0.00 3.32
5156 7208 7.637709 TTCATGTTGTATATCTTCGGAATCG 57.362 36.000 0.00 0.00 37.82 3.34
5157 7209 5.633601 TCATGTTGTATATCTTCGGAATCGC 59.366 40.000 0.00 0.00 36.13 4.58
5158 7210 5.196341 TGTTGTATATCTTCGGAATCGCT 57.804 39.130 0.00 0.00 36.13 4.93
5159 7211 5.597806 TGTTGTATATCTTCGGAATCGCTT 58.402 37.500 0.00 0.00 36.13 4.68
5160 7212 6.741109 TGTTGTATATCTTCGGAATCGCTTA 58.259 36.000 0.00 0.00 36.13 3.09
5161 7213 7.375834 TGTTGTATATCTTCGGAATCGCTTAT 58.624 34.615 0.00 0.00 36.13 1.73
5162 7214 8.517056 TGTTGTATATCTTCGGAATCGCTTATA 58.483 33.333 0.00 0.00 36.13 0.98
5163 7215 9.517609 GTTGTATATCTTCGGAATCGCTTATAT 57.482 33.333 0.00 0.00 36.13 0.86
5170 7222 8.630278 TCTTCGGAATCGCTTATATAAATAGC 57.370 34.615 0.00 0.00 36.13 2.97
5171 7223 8.467598 TCTTCGGAATCGCTTATATAAATAGCT 58.532 33.333 0.00 0.00 36.13 3.32
5172 7224 8.997621 TTCGGAATCGCTTATATAAATAGCTT 57.002 30.769 0.00 0.00 36.13 3.74
5173 7225 8.997621 TCGGAATCGCTTATATAAATAGCTTT 57.002 30.769 0.00 0.00 36.13 3.51
5174 7226 9.431887 TCGGAATCGCTTATATAAATAGCTTTT 57.568 29.630 0.00 0.00 36.13 2.27
5180 7232 9.772973 TCGCTTATATAAATAGCTTTTTCTGGA 57.227 29.630 5.36 0.00 0.00 3.86
5187 7239 5.629079 AATAGCTTTTTCTGGAAACTCGG 57.371 39.130 0.00 0.00 0.00 4.63
5188 7240 2.932261 AGCTTTTTCTGGAAACTCGGT 58.068 42.857 0.00 0.00 0.00 4.69
5189 7241 3.288092 AGCTTTTTCTGGAAACTCGGTT 58.712 40.909 0.00 0.00 0.00 4.44
5190 7242 4.457466 AGCTTTTTCTGGAAACTCGGTTA 58.543 39.130 0.00 0.00 0.00 2.85
5191 7243 4.885325 AGCTTTTTCTGGAAACTCGGTTAA 59.115 37.500 0.00 0.00 0.00 2.01
5192 7244 5.535030 AGCTTTTTCTGGAAACTCGGTTAAT 59.465 36.000 0.00 0.00 0.00 1.40
5193 7245 5.629435 GCTTTTTCTGGAAACTCGGTTAATG 59.371 40.000 0.00 0.00 0.00 1.90
5194 7246 6.702716 TTTTTCTGGAAACTCGGTTAATGT 57.297 33.333 0.00 0.00 0.00 2.71
5195 7247 6.702716 TTTTCTGGAAACTCGGTTAATGTT 57.297 33.333 0.00 0.00 0.00 2.71
5200 7252 5.583495 TGGAAACTCGGTTAATGTTTGTTG 58.417 37.500 0.00 0.00 34.55 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.821136 GAACTCCAAATGCCCTCTTGG 59.179 52.381 0.00 0.00 43.00 3.61
27 28 2.800250 CAGAACTCCAAATGCCCTCTT 58.200 47.619 0.00 0.00 0.00 2.85
58 59 0.532862 AGGTCCACGAACAACTGCAG 60.533 55.000 13.48 13.48 0.00 4.41
113 115 4.787551 TCACACAACATATCATAACCCCC 58.212 43.478 0.00 0.00 0.00 5.40
114 116 6.061441 TGATCACACAACATATCATAACCCC 58.939 40.000 0.00 0.00 0.00 4.95
115 117 7.308770 CCATGATCACACAACATATCATAACCC 60.309 40.741 0.00 0.00 37.04 4.11
162 164 1.342496 GCATCCTCATCGTCATCCTCA 59.658 52.381 0.00 0.00 0.00 3.86
171 173 3.344215 GCGGCAGCATCCTCATCG 61.344 66.667 3.18 0.00 44.35 3.84
232 234 4.588899 TCAAATGTGGTCGGATTCTGATT 58.411 39.130 0.00 0.00 0.00 2.57
234 236 3.694043 TCAAATGTGGTCGGATTCTGA 57.306 42.857 0.00 0.00 0.00 3.27
331 333 1.270199 TGTCGCCTTTAACCGCTACAA 60.270 47.619 0.00 0.00 28.87 2.41
335 337 0.533308 TGTTGTCGCCTTTAACCGCT 60.533 50.000 0.00 0.00 0.00 5.52
347 350 3.807622 ACTACACTCCAACATTGTTGTCG 59.192 43.478 24.01 17.33 34.06 4.35
378 404 7.953005 ATAGCTGCATACATAGAGTACAGAT 57.047 36.000 1.02 0.00 35.05 2.90
397 454 2.991250 AGTCCGCATGTTCAAATAGCT 58.009 42.857 0.00 0.00 0.00 3.32
514 572 2.230992 CCACAAATTTCTTCCCGCATGA 59.769 45.455 0.00 0.00 0.00 3.07
515 573 2.609350 CCACAAATTTCTTCCCGCATG 58.391 47.619 0.00 0.00 0.00 4.06
524 582 0.536460 ACGGCGACCCACAAATTTCT 60.536 50.000 16.62 0.00 0.00 2.52
539 597 2.614057 CAATAAGGACATCTCCAACGGC 59.386 50.000 0.00 0.00 39.39 5.68
577 635 7.594758 CCGAAAATGCTCAAATAGTTTCTTTCA 59.405 33.333 0.00 0.00 0.00 2.69
594 653 5.289434 GGTCATTTTTCTCATCCGAAAATGC 59.711 40.000 13.18 9.59 41.12 3.56
617 676 7.060383 AGATCAATAACACAGGTAGATGAGG 57.940 40.000 0.00 0.00 0.00 3.86
756 815 7.637709 TGCTACAATACGATTGCTACTATTG 57.362 36.000 0.00 0.00 34.22 1.90
759 818 7.923878 TCAATTGCTACAATACGATTGCTACTA 59.076 33.333 0.00 0.00 37.51 1.82
760 819 6.761242 TCAATTGCTACAATACGATTGCTACT 59.239 34.615 0.00 0.00 37.51 2.57
761 820 6.943981 TCAATTGCTACAATACGATTGCTAC 58.056 36.000 0.00 0.00 37.51 3.58
768 827 4.093703 CCGGTTTCAATTGCTACAATACGA 59.906 41.667 0.00 0.00 0.00 3.43
801 860 2.282391 TGGTGGGTCATGTGCTGC 60.282 61.111 0.00 0.00 0.00 5.25
890 2260 4.262617 GGAAGTATCACTCTGGTTTTCCC 58.737 47.826 0.00 0.00 39.73 3.97
1122 2492 1.369930 GCTAAAACGCAGCGCACAA 60.370 52.632 16.61 0.00 0.00 3.33
1165 2535 1.450312 CCCTCGCATCAGAACACCC 60.450 63.158 0.00 0.00 0.00 4.61
1218 2589 3.186119 GAGGAAGAGCTTCTTGACATCG 58.814 50.000 9.82 0.00 36.73 3.84
1298 2669 6.153510 GTGGAAAAGGAAGGCTAGAATGAAAT 59.846 38.462 0.00 0.00 0.00 2.17
1313 2684 2.549992 CCAGACATGTCGTGGAAAAGGA 60.550 50.000 27.15 0.00 32.96 3.36
1314 2685 1.806542 CCAGACATGTCGTGGAAAAGG 59.193 52.381 27.15 14.78 32.96 3.11
1321 2700 3.297830 TGAGTTACCAGACATGTCGTG 57.702 47.619 19.85 16.53 34.09 4.35
1324 2703 3.935203 CACCATGAGTTACCAGACATGTC 59.065 47.826 18.47 18.47 38.56 3.06
1333 2712 4.273148 AGTTCAGACACCATGAGTTACC 57.727 45.455 0.00 0.00 0.00 2.85
1341 2727 2.744202 GCGATGAAAGTTCAGACACCAT 59.256 45.455 0.00 0.00 41.08 3.55
1342 2728 2.143122 GCGATGAAAGTTCAGACACCA 58.857 47.619 0.00 0.00 41.08 4.17
1343 2729 1.464997 GGCGATGAAAGTTCAGACACC 59.535 52.381 0.00 0.00 41.08 4.16
1344 2730 2.143122 TGGCGATGAAAGTTCAGACAC 58.857 47.619 0.00 0.00 41.08 3.67
1345 2731 2.542020 TGGCGATGAAAGTTCAGACA 57.458 45.000 0.00 0.00 41.08 3.41
1382 2774 7.445402 AGAAGTTCAGAAACTAAGCAAGCATTA 59.555 33.333 5.50 0.00 45.07 1.90
1386 2778 5.468409 AGAGAAGTTCAGAAACTAAGCAAGC 59.532 40.000 5.50 0.00 45.07 4.01
1412 2804 3.396260 TCCCTCTGTTCTTAAACGGTG 57.604 47.619 0.00 0.00 41.66 4.94
1416 2808 6.526526 AGAGAAGTTCCCTCTGTTCTTAAAC 58.473 40.000 0.00 0.00 39.36 2.01
1419 2811 4.773149 GGAGAGAAGTTCCCTCTGTTCTTA 59.227 45.833 13.43 0.00 40.78 2.10
1444 2836 8.251383 TCCCTCTACTATTAACTCTTGAATGG 57.749 38.462 0.00 0.00 0.00 3.16
1454 2846 9.886132 TCTTGAATTGTTCCCTCTACTATTAAC 57.114 33.333 0.00 0.00 0.00 2.01
1461 2853 8.794335 AGTTATTCTTGAATTGTTCCCTCTAC 57.206 34.615 0.95 0.00 0.00 2.59
1498 2899 2.158971 ACATGACCTATATGTGTGCGCA 60.159 45.455 5.66 5.66 37.38 6.09
1500 2901 2.726241 CGACATGACCTATATGTGTGCG 59.274 50.000 0.00 0.00 38.78 5.34
1503 2904 6.127451 TGAGTTTCGACATGACCTATATGTGT 60.127 38.462 0.00 0.00 38.78 3.72
1506 2907 8.300286 AGTATGAGTTTCGACATGACCTATATG 58.700 37.037 0.00 0.00 0.00 1.78
1515 2916 3.241773 CGTGCAGTATGAGTTTCGACATG 60.242 47.826 0.00 0.00 39.69 3.21
1521 2922 2.480419 AGTTGCGTGCAGTATGAGTTTC 59.520 45.455 0.00 0.00 39.69 2.78
1555 2956 1.198637 AGCAAAGCTTCGAGAATGCAC 59.801 47.619 18.10 0.00 33.89 4.57
1605 3008 8.573035 CAACTGCCTATCTACTTTAAACCAAAA 58.427 33.333 0.00 0.00 0.00 2.44
1646 3051 7.226918 CCTCCTTTTCGAAAAAGAAGTTAGTCT 59.773 37.037 22.67 0.00 0.00 3.24
1647 3052 7.353497 CCTCCTTTTCGAAAAAGAAGTTAGTC 58.647 38.462 22.67 0.00 0.00 2.59
1648 3053 6.262496 CCCTCCTTTTCGAAAAAGAAGTTAGT 59.738 38.462 22.67 0.00 0.00 2.24
1649 3054 6.485648 TCCCTCCTTTTCGAAAAAGAAGTTAG 59.514 38.462 22.67 10.60 0.00 2.34
1650 3055 6.358991 TCCCTCCTTTTCGAAAAAGAAGTTA 58.641 36.000 22.67 6.89 0.00 2.24
1651 3056 5.198207 TCCCTCCTTTTCGAAAAAGAAGTT 58.802 37.500 22.67 0.00 0.00 2.66
1677 3082 3.650950 GTTGCTGAGGCTGGGGGA 61.651 66.667 0.00 0.00 39.59 4.81
1683 3088 4.677673 AATTCTTTTTGTTGCTGAGGCT 57.322 36.364 0.00 0.00 39.59 4.58
1700 3105 4.563061 ACAAGCATCTTTCTGCCAAATTC 58.437 39.130 0.00 0.00 43.33 2.17
1709 3114 9.624373 ATTGATCTATACAACAAGCATCTTTCT 57.376 29.630 0.00 0.00 0.00 2.52
1876 3288 5.314718 TCATGACCCTACTTCTATCGGTA 57.685 43.478 0.00 0.00 0.00 4.02
2012 3429 3.384668 CCACTGCATCCTACTCATTACG 58.615 50.000 0.00 0.00 0.00 3.18
2013 3430 3.134458 GCCACTGCATCCTACTCATTAC 58.866 50.000 0.00 0.00 37.47 1.89
2014 3431 2.771372 TGCCACTGCATCCTACTCATTA 59.229 45.455 0.00 0.00 44.23 1.90
2015 3432 1.561076 TGCCACTGCATCCTACTCATT 59.439 47.619 0.00 0.00 44.23 2.57
2016 3433 1.206878 TGCCACTGCATCCTACTCAT 58.793 50.000 0.00 0.00 44.23 2.90
2017 3434 2.682631 TGCCACTGCATCCTACTCA 58.317 52.632 0.00 0.00 44.23 3.41
2049 3466 1.102978 CCATTCATTTCCCCACGGAC 58.897 55.000 0.00 0.00 38.14 4.79
2116 3533 2.735663 CAGCTCAACTGCTCAACTACTG 59.264 50.000 0.00 0.00 41.98 2.74
2135 3552 1.301244 AAGTGCGCTGGAGACACAG 60.301 57.895 9.73 0.00 41.41 3.66
2136 3553 1.595109 CAAGTGCGCTGGAGACACA 60.595 57.895 9.73 0.00 36.76 3.72
2137 3554 1.287730 CTCAAGTGCGCTGGAGACAC 61.288 60.000 24.93 0.00 43.91 3.67
2138 3555 1.005748 CTCAAGTGCGCTGGAGACA 60.006 57.895 24.93 0.00 43.91 3.41
2139 3556 1.290324 TCTCAAGTGCGCTGGAGAC 59.710 57.895 27.16 0.00 44.62 3.36
2197 3614 2.235155 TGCTAACCCAATCGCAGACTTA 59.765 45.455 0.00 0.00 42.51 2.24
2206 3623 3.019564 AGTGAATGCTGCTAACCCAATC 58.980 45.455 0.00 0.00 0.00 2.67
2277 3697 7.201149 CGAAACAGCGTTCATAAATTACTGTTG 60.201 37.037 6.28 0.00 43.85 3.33
2306 3726 1.002544 CCTCCCTGTGACCTGAAGAAC 59.997 57.143 0.00 0.00 0.00 3.01
2309 3729 0.545309 TCCCTCCCTGTGACCTGAAG 60.545 60.000 0.00 0.00 0.00 3.02
2479 3899 2.194271 GTAGTCGCAGCTATGTTGACC 58.806 52.381 0.00 0.00 35.68 4.02
2617 4040 4.394439 TCCAAGCAGCGTATATGTTGTA 57.606 40.909 10.10 0.00 0.00 2.41
2619 4042 4.818534 ATTCCAAGCAGCGTATATGTTG 57.181 40.909 4.52 4.52 0.00 3.33
2626 4049 3.603158 TCAGTTATTCCAAGCAGCGTA 57.397 42.857 0.00 0.00 0.00 4.42
2654 4077 7.011482 GTCGTATCTGAAAAAGTAAGGCATCAT 59.989 37.037 0.00 0.00 0.00 2.45
2660 4084 5.061808 CCACGTCGTATCTGAAAAAGTAAGG 59.938 44.000 0.00 0.00 0.00 2.69
2661 4085 5.444218 GCCACGTCGTATCTGAAAAAGTAAG 60.444 44.000 0.00 0.00 0.00 2.34
2933 4386 2.257207 CCCTCCTTTAGTGTCTCACCA 58.743 52.381 0.00 0.00 34.49 4.17
3353 5208 9.794685 AAGAAGAAAAATCAAGAAAACAGAGTC 57.205 29.630 0.00 0.00 0.00 3.36
3354 5209 9.794685 GAAGAAGAAAAATCAAGAAAACAGAGT 57.205 29.630 0.00 0.00 0.00 3.24
3356 5211 7.915397 CCGAAGAAGAAAAATCAAGAAAACAGA 59.085 33.333 0.00 0.00 0.00 3.41
3357 5212 7.168135 CCCGAAGAAGAAAAATCAAGAAAACAG 59.832 37.037 0.00 0.00 0.00 3.16
3358 5213 6.978080 CCCGAAGAAGAAAAATCAAGAAAACA 59.022 34.615 0.00 0.00 0.00 2.83
3359 5214 7.167635 GTCCCGAAGAAGAAAAATCAAGAAAAC 59.832 37.037 0.00 0.00 0.00 2.43
3361 5216 6.546034 AGTCCCGAAGAAGAAAAATCAAGAAA 59.454 34.615 0.00 0.00 0.00 2.52
3367 5222 6.796705 TTACAGTCCCGAAGAAGAAAAATC 57.203 37.500 0.00 0.00 0.00 2.17
3374 5230 4.124238 TGTTGTTTACAGTCCCGAAGAAG 58.876 43.478 0.00 0.00 31.68 2.85
3401 5257 4.866486 GTCCTGAAAATGTTCAATCCATGC 59.134 41.667 0.00 0.00 43.18 4.06
3405 5261 5.567138 ATCGTCCTGAAAATGTTCAATCC 57.433 39.130 0.00 0.00 43.18 3.01
3406 5262 5.063438 TCGATCGTCCTGAAAATGTTCAATC 59.937 40.000 15.94 0.00 43.18 2.67
3411 5294 2.666508 CGTCGATCGTCCTGAAAATGTT 59.333 45.455 15.94 0.00 34.52 2.71
3413 5296 1.005975 GCGTCGATCGTCCTGAAAATG 60.006 52.381 15.94 0.00 42.13 2.32
3467 5351 0.966920 TGAGGTCGACCAGGAAGAAC 59.033 55.000 35.00 15.38 38.89 3.01
3550 5460 4.475051 TGGGTAACGTACTTGCATACAT 57.525 40.909 0.00 0.00 37.60 2.29
3552 5462 4.092383 CAGTTGGGTAACGTACTTGCATAC 59.908 45.833 0.00 0.00 41.71 2.39
3553 5463 4.247258 CAGTTGGGTAACGTACTTGCATA 58.753 43.478 0.00 0.00 41.71 3.14
3554 5464 3.071479 CAGTTGGGTAACGTACTTGCAT 58.929 45.455 0.00 0.00 41.71 3.96
3556 5466 2.486918 ACAGTTGGGTAACGTACTTGC 58.513 47.619 0.00 0.00 41.71 4.01
3558 5468 4.677673 AGAACAGTTGGGTAACGTACTT 57.322 40.909 0.00 0.00 41.71 2.24
3922 5926 0.251341 ATCCAACCAACCCAGCAGAC 60.251 55.000 0.00 0.00 0.00 3.51
3956 5960 2.568090 GCAATGTTCACCAGCCGG 59.432 61.111 0.00 0.00 38.77 6.13
4053 6057 0.107831 TTGAACAAGCTGTAGGGCGT 59.892 50.000 0.00 0.00 37.29 5.68
4110 6123 6.716173 GGACGAAGGGAGTATTATCTTACTCT 59.284 42.308 10.48 0.00 44.90 3.24
4111 6124 6.716173 AGGACGAAGGGAGTATTATCTTACTC 59.284 42.308 0.00 3.56 44.84 2.59
4112 6125 6.612741 AGGACGAAGGGAGTATTATCTTACT 58.387 40.000 0.00 0.00 35.13 2.24
4113 6126 6.897706 AGGACGAAGGGAGTATTATCTTAC 57.102 41.667 0.00 0.00 0.00 2.34
4114 6127 9.425248 TTTTAGGACGAAGGGAGTATTATCTTA 57.575 33.333 0.00 0.00 0.00 2.10
4115 6128 7.909485 TTTAGGACGAAGGGAGTATTATCTT 57.091 36.000 0.00 0.00 0.00 2.40
4122 6135 6.438425 ACACTTATTTTAGGACGAAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
4124 6137 5.731591 ACACTTATTTTAGGACGAAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
4125 6138 5.482878 AGACACTTATTTTAGGACGAAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
4126 6139 5.731591 AGACACTTATTTTAGGACGAAGGG 58.268 41.667 0.00 0.00 0.00 3.95
4127 6140 8.767478 TTAAGACACTTATTTTAGGACGAAGG 57.233 34.615 0.00 0.00 0.00 3.46
4166 6179 9.985730 TCCGTCTCAAAATAAGTCTTAACTTTA 57.014 29.630 0.00 0.00 43.28 1.85
4167 6180 8.897872 TCCGTCTCAAAATAAGTCTTAACTTT 57.102 30.769 0.00 0.00 43.28 2.66
4169 6182 7.097834 CCTCCGTCTCAAAATAAGTCTTAACT 58.902 38.462 0.00 0.00 37.32 2.24
4170 6183 6.313164 CCCTCCGTCTCAAAATAAGTCTTAAC 59.687 42.308 0.00 0.00 0.00 2.01
4171 6184 6.211986 TCCCTCCGTCTCAAAATAAGTCTTAA 59.788 38.462 0.00 0.00 0.00 1.85
4172 6185 5.718130 TCCCTCCGTCTCAAAATAAGTCTTA 59.282 40.000 0.00 0.00 0.00 2.10
4173 6186 4.530946 TCCCTCCGTCTCAAAATAAGTCTT 59.469 41.667 0.00 0.00 0.00 3.01
4174 6187 4.094476 TCCCTCCGTCTCAAAATAAGTCT 58.906 43.478 0.00 0.00 0.00 3.24
4175 6188 4.467198 TCCCTCCGTCTCAAAATAAGTC 57.533 45.455 0.00 0.00 0.00 3.01
4176 6189 4.903045 TTCCCTCCGTCTCAAAATAAGT 57.097 40.909 0.00 0.00 0.00 2.24
4177 6190 6.583562 ACTATTCCCTCCGTCTCAAAATAAG 58.416 40.000 0.00 0.00 0.00 1.73
4178 6191 6.555463 ACTATTCCCTCCGTCTCAAAATAA 57.445 37.500 0.00 0.00 0.00 1.40
4179 6192 6.238842 CGTACTATTCCCTCCGTCTCAAAATA 60.239 42.308 0.00 0.00 0.00 1.40
4180 6193 5.451520 CGTACTATTCCCTCCGTCTCAAAAT 60.452 44.000 0.00 0.00 0.00 1.82
4181 6194 4.142315 CGTACTATTCCCTCCGTCTCAAAA 60.142 45.833 0.00 0.00 0.00 2.44
4182 6195 3.379372 CGTACTATTCCCTCCGTCTCAAA 59.621 47.826 0.00 0.00 0.00 2.69
4183 6196 2.947652 CGTACTATTCCCTCCGTCTCAA 59.052 50.000 0.00 0.00 0.00 3.02
4184 6197 2.569059 CGTACTATTCCCTCCGTCTCA 58.431 52.381 0.00 0.00 0.00 3.27
4185 6198 1.878734 CCGTACTATTCCCTCCGTCTC 59.121 57.143 0.00 0.00 0.00 3.36
4186 6199 1.213926 ACCGTACTATTCCCTCCGTCT 59.786 52.381 0.00 0.00 0.00 4.18
4187 6200 1.685148 ACCGTACTATTCCCTCCGTC 58.315 55.000 0.00 0.00 0.00 4.79
4188 6201 2.027385 GAACCGTACTATTCCCTCCGT 58.973 52.381 0.00 0.00 0.00 4.69
4189 6202 2.305009 AGAACCGTACTATTCCCTCCG 58.695 52.381 3.14 0.00 0.00 4.63
4190 6203 4.161001 TCAAAGAACCGTACTATTCCCTCC 59.839 45.833 3.14 0.00 0.00 4.30
4191 6204 5.105432 AGTCAAAGAACCGTACTATTCCCTC 60.105 44.000 3.14 0.00 0.00 4.30
4192 6205 4.776308 AGTCAAAGAACCGTACTATTCCCT 59.224 41.667 3.14 0.00 0.00 4.20
4193 6206 5.082251 AGTCAAAGAACCGTACTATTCCC 57.918 43.478 3.14 0.00 0.00 3.97
4194 6207 6.161381 TCAAGTCAAAGAACCGTACTATTCC 58.839 40.000 3.14 0.00 0.00 3.01
4195 6208 7.829378 ATCAAGTCAAAGAACCGTACTATTC 57.171 36.000 0.00 0.00 0.00 1.75
4196 6209 8.617290 AAATCAAGTCAAAGAACCGTACTATT 57.383 30.769 0.00 0.00 0.00 1.73
4197 6210 8.617290 AAAATCAAGTCAAAGAACCGTACTAT 57.383 30.769 0.00 0.00 0.00 2.12
4198 6211 8.441312 AAAAATCAAGTCAAAGAACCGTACTA 57.559 30.769 0.00 0.00 0.00 1.82
4229 6242 3.890756 TGTCATCAAAGCTTCACATGGTT 59.109 39.130 0.00 0.00 0.00 3.67
4233 6246 5.242171 TGTTCATGTCATCAAAGCTTCACAT 59.758 36.000 0.00 0.96 0.00 3.21
4303 6316 9.941664 CGAAATCAAAGTAATATTCTTCTGCAT 57.058 29.630 0.00 0.00 0.00 3.96
4341 6354 0.889306 AAGTAGCTGTCCCAGTCGAC 59.111 55.000 7.70 7.70 33.43 4.20
4358 6371 3.545703 GGGGATGTGAACACCATAGAAG 58.454 50.000 2.46 0.00 0.00 2.85
4414 6456 3.189702 TGGCTGGAAATTTGCGTAGTTAC 59.810 43.478 5.16 0.00 0.00 2.50
4519 6562 1.349688 AGGGAGACAATTGTTACCGCA 59.650 47.619 13.36 0.00 0.00 5.69
4560 6603 7.092716 AGCTGCATAATAAACCTCACAAAAAG 58.907 34.615 1.02 0.00 0.00 2.27
4564 6607 5.500234 AGAGCTGCATAATAAACCTCACAA 58.500 37.500 1.02 0.00 0.00 3.33
4566 6609 7.442364 TCATTAGAGCTGCATAATAAACCTCAC 59.558 37.037 1.02 0.00 0.00 3.51
4569 6612 8.930846 ATTCATTAGAGCTGCATAATAAACCT 57.069 30.769 1.02 0.00 0.00 3.50
4610 6657 2.937873 GCCGTGGGAGTTGCATAACTAA 60.938 50.000 0.00 0.00 46.79 2.24
4647 6694 7.761249 ACTTCCTTTTTGTGAAAGAAGACATTG 59.239 33.333 4.69 0.00 33.80 2.82
4656 6703 6.923508 GGGTATCAACTTCCTTTTTGTGAAAG 59.076 38.462 0.00 0.00 0.00 2.62
4723 6774 2.039216 TCGGATGTTGGTTGTATGGTGT 59.961 45.455 0.00 0.00 0.00 4.16
4725 6776 3.008594 TCTTCGGATGTTGGTTGTATGGT 59.991 43.478 0.00 0.00 0.00 3.55
4757 6808 7.094377 TGGTTGTGATTAGTCTTATTTTCTGCC 60.094 37.037 0.00 0.00 0.00 4.85
4769 6820 7.254455 CCTGTTATCGATTGGTTGTGATTAGTC 60.254 40.741 1.71 0.00 0.00 2.59
4772 6823 5.820423 CCCTGTTATCGATTGGTTGTGATTA 59.180 40.000 1.71 0.00 0.00 1.75
4785 6836 6.971726 ATATGAGTGTAACCCTGTTATCGA 57.028 37.500 0.00 0.00 37.80 3.59
4818 6869 4.134563 ACATTGGATGGCGGTCTAATAAC 58.865 43.478 1.98 0.00 29.53 1.89
4824 6875 1.072331 GGATACATTGGATGGCGGTCT 59.928 52.381 0.00 0.00 33.60 3.85
4845 6896 0.107410 TTCCAGTTGACGGTTGCACT 60.107 50.000 0.00 0.00 0.00 4.40
4850 6901 3.317993 CCTTTGATTTCCAGTTGACGGTT 59.682 43.478 0.00 0.00 0.00 4.44
4857 6908 4.934356 TCTATGGCCTTTGATTTCCAGTT 58.066 39.130 3.32 0.00 31.36 3.16
4858 6909 4.591321 TCTATGGCCTTTGATTTCCAGT 57.409 40.909 3.32 0.00 31.36 4.00
4859 6910 4.891756 ACATCTATGGCCTTTGATTTCCAG 59.108 41.667 11.96 4.82 31.36 3.86
4899 6950 7.851228 TGGATCCGTATATGATGCTCTTTATT 58.149 34.615 7.39 0.00 32.40 1.40
4922 6973 7.387122 CAGGTTATCTTCTGATGTACATGATGG 59.613 40.741 14.43 0.00 34.93 3.51
4927 6978 6.239217 TGCAGGTTATCTTCTGATGTACAT 57.761 37.500 8.43 8.43 34.32 2.29
4932 6983 5.469421 GGATCTTGCAGGTTATCTTCTGATG 59.531 44.000 0.00 0.00 34.32 3.07
4981 7033 6.853490 AGGGAGTAGAAGAAACCTTTCAATT 58.147 36.000 0.78 0.00 39.61 2.32
4982 7034 6.273495 AGAGGGAGTAGAAGAAACCTTTCAAT 59.727 38.462 0.78 0.00 39.61 2.57
5008 7060 9.204570 AGAAATATACGCACTACATTATGGAAC 57.795 33.333 0.00 0.00 0.00 3.62
5009 7061 9.772973 AAGAAATATACGCACTACATTATGGAA 57.227 29.630 0.00 0.00 0.00 3.53
5010 7062 9.772973 AAAGAAATATACGCACTACATTATGGA 57.227 29.630 0.00 0.00 0.00 3.41
5017 7069 9.865321 ACTTCTAAAAGAAATATACGCACTACA 57.135 29.630 0.00 0.00 33.19 2.74
5019 7071 9.525409 GGACTTCTAAAAGAAATATACGCACTA 57.475 33.333 0.00 0.00 33.19 2.74
5020 7072 8.038944 TGGACTTCTAAAAGAAATATACGCACT 58.961 33.333 0.00 0.00 33.19 4.40
5021 7073 8.193250 TGGACTTCTAAAAGAAATATACGCAC 57.807 34.615 0.00 0.00 33.19 5.34
5022 7074 8.780846 TTGGACTTCTAAAAGAAATATACGCA 57.219 30.769 0.00 0.00 33.19 5.24
5023 7075 9.651718 CATTGGACTTCTAAAAGAAATATACGC 57.348 33.333 0.00 0.00 33.19 4.42
5032 7084 9.403583 AGTTTGTAACATTGGACTTCTAAAAGA 57.596 29.630 0.00 0.00 36.30 2.52
5039 7091 9.959749 TGATTAAAGTTTGTAACATTGGACTTC 57.040 29.630 0.00 0.00 0.00 3.01
5090 7142 7.654520 GCATCAATGATATGCATTTGGTACTTT 59.345 33.333 3.54 0.00 44.68 2.66
5091 7143 7.149973 GCATCAATGATATGCATTTGGTACTT 58.850 34.615 3.54 0.00 44.68 2.24
5092 7144 6.684686 GCATCAATGATATGCATTTGGTACT 58.315 36.000 3.54 0.00 44.68 2.73
5093 7145 6.939551 GCATCAATGATATGCATTTGGTAC 57.060 37.500 3.54 0.00 44.68 3.34
5103 7155 5.813080 ACGGATGATGCATCAATGATATG 57.187 39.130 31.79 18.69 42.13 1.78
5104 7156 9.788889 ATATAACGGATGATGCATCAATGATAT 57.211 29.630 31.79 25.17 42.13 1.63
5105 7157 9.617523 AATATAACGGATGATGCATCAATGATA 57.382 29.630 31.79 21.28 42.13 2.15
5106 7158 8.515695 AATATAACGGATGATGCATCAATGAT 57.484 30.769 31.79 16.60 42.13 2.45
5107 7159 7.926674 AATATAACGGATGATGCATCAATGA 57.073 32.000 31.79 14.88 42.13 2.57
5108 7160 8.975410 AAAATATAACGGATGATGCATCAATG 57.025 30.769 31.79 24.36 42.13 2.82
5109 7161 8.795513 TGAAAATATAACGGATGATGCATCAAT 58.204 29.630 31.79 21.15 42.13 2.57
5110 7162 8.164058 TGAAAATATAACGGATGATGCATCAA 57.836 30.769 31.79 15.72 42.13 2.57
5111 7163 7.742556 TGAAAATATAACGGATGATGCATCA 57.257 32.000 30.47 30.47 42.13 3.07
5112 7164 8.239314 ACATGAAAATATAACGGATGATGCATC 58.761 33.333 20.14 20.14 39.87 3.91
5113 7165 8.114331 ACATGAAAATATAACGGATGATGCAT 57.886 30.769 0.00 0.00 0.00 3.96
5114 7166 7.509141 ACATGAAAATATAACGGATGATGCA 57.491 32.000 0.00 0.00 0.00 3.96
5115 7167 7.862372 ACAACATGAAAATATAACGGATGATGC 59.138 33.333 0.00 0.00 0.00 3.91
5130 7182 8.547894 CGATTCCGAAGATATACAACATGAAAA 58.452 33.333 0.00 0.00 38.22 2.29
5131 7183 7.307160 GCGATTCCGAAGATATACAACATGAAA 60.307 37.037 0.00 0.00 38.22 2.69
5132 7184 6.145534 GCGATTCCGAAGATATACAACATGAA 59.854 38.462 0.00 0.00 38.22 2.57
5133 7185 5.633601 GCGATTCCGAAGATATACAACATGA 59.366 40.000 0.00 0.00 38.22 3.07
5134 7186 5.635280 AGCGATTCCGAAGATATACAACATG 59.365 40.000 0.00 0.00 38.22 3.21
5135 7187 5.784177 AGCGATTCCGAAGATATACAACAT 58.216 37.500 0.00 0.00 38.22 2.71
5136 7188 5.196341 AGCGATTCCGAAGATATACAACA 57.804 39.130 0.00 0.00 38.22 3.33
5137 7189 7.813852 ATAAGCGATTCCGAAGATATACAAC 57.186 36.000 0.00 0.00 38.22 3.32
5144 7196 9.250624 GCTATTTATATAAGCGATTCCGAAGAT 57.749 33.333 0.00 0.00 38.22 2.40
5145 7197 8.467598 AGCTATTTATATAAGCGATTCCGAAGA 58.532 33.333 0.00 0.00 38.22 2.87
5146 7198 8.635877 AGCTATTTATATAAGCGATTCCGAAG 57.364 34.615 0.00 0.00 38.22 3.79
5147 7199 8.997621 AAGCTATTTATATAAGCGATTCCGAA 57.002 30.769 0.00 0.00 38.22 4.30
5148 7200 8.997621 AAAGCTATTTATATAAGCGATTCCGA 57.002 30.769 0.00 0.00 38.22 4.55
5154 7206 9.772973 TCCAGAAAAAGCTATTTATATAAGCGA 57.227 29.630 0.00 0.00 0.00 4.93
5161 7213 8.889717 CCGAGTTTCCAGAAAAAGCTATTTATA 58.110 33.333 0.00 0.00 31.33 0.98
5162 7214 7.393515 ACCGAGTTTCCAGAAAAAGCTATTTAT 59.606 33.333 0.00 0.00 31.33 1.40
5163 7215 6.713450 ACCGAGTTTCCAGAAAAAGCTATTTA 59.287 34.615 0.00 0.00 31.33 1.40
5164 7216 5.535030 ACCGAGTTTCCAGAAAAAGCTATTT 59.465 36.000 0.00 0.00 31.33 1.40
5165 7217 5.070685 ACCGAGTTTCCAGAAAAAGCTATT 58.929 37.500 0.00 0.00 31.33 1.73
5166 7218 4.652822 ACCGAGTTTCCAGAAAAAGCTAT 58.347 39.130 0.00 0.00 31.33 2.97
5167 7219 4.081322 ACCGAGTTTCCAGAAAAAGCTA 57.919 40.909 0.00 0.00 31.33 3.32
5168 7220 2.932261 ACCGAGTTTCCAGAAAAAGCT 58.068 42.857 0.00 0.00 31.33 3.74
5169 7221 3.710326 AACCGAGTTTCCAGAAAAAGC 57.290 42.857 0.00 0.00 31.33 3.51
5170 7222 6.735130 ACATTAACCGAGTTTCCAGAAAAAG 58.265 36.000 0.00 0.00 31.33 2.27
5171 7223 6.702716 ACATTAACCGAGTTTCCAGAAAAA 57.297 33.333 0.00 0.00 31.33 1.94
5172 7224 6.702716 AACATTAACCGAGTTTCCAGAAAA 57.297 33.333 0.00 0.00 31.33 2.29
5173 7225 6.095720 ACAAACATTAACCGAGTTTCCAGAAA 59.904 34.615 0.00 0.00 33.54 2.52
5174 7226 5.591067 ACAAACATTAACCGAGTTTCCAGAA 59.409 36.000 0.00 0.00 33.54 3.02
5175 7227 5.127491 ACAAACATTAACCGAGTTTCCAGA 58.873 37.500 0.00 0.00 33.54 3.86
5176 7228 5.432885 ACAAACATTAACCGAGTTTCCAG 57.567 39.130 0.00 0.00 33.54 3.86
5177 7229 5.450688 CCAACAAACATTAACCGAGTTTCCA 60.451 40.000 0.00 0.00 33.54 3.53
5178 7230 4.979815 CCAACAAACATTAACCGAGTTTCC 59.020 41.667 0.00 0.00 33.54 3.13
5179 7231 5.823353 TCCAACAAACATTAACCGAGTTTC 58.177 37.500 0.00 0.00 33.54 2.78
5180 7232 5.358725 ACTCCAACAAACATTAACCGAGTTT 59.641 36.000 0.00 0.00 36.00 2.66
5181 7233 4.885325 ACTCCAACAAACATTAACCGAGTT 59.115 37.500 0.00 0.00 0.00 3.01
5182 7234 4.457466 ACTCCAACAAACATTAACCGAGT 58.543 39.130 0.00 0.00 0.00 4.18
5183 7235 6.548441 TTACTCCAACAAACATTAACCGAG 57.452 37.500 0.00 0.00 0.00 4.63
5184 7236 6.238703 GGTTTACTCCAACAAACATTAACCGA 60.239 38.462 0.00 0.00 36.56 4.69
5185 7237 5.916320 GGTTTACTCCAACAAACATTAACCG 59.084 40.000 0.00 0.00 36.56 4.44
5186 7238 6.698329 GTGGTTTACTCCAACAAACATTAACC 59.302 38.462 0.00 0.00 39.34 2.85
5187 7239 6.415573 CGTGGTTTACTCCAACAAACATTAAC 59.584 38.462 0.00 0.00 39.34 2.01
5188 7240 6.095160 ACGTGGTTTACTCCAACAAACATTAA 59.905 34.615 0.00 0.00 39.34 1.40
5189 7241 5.589452 ACGTGGTTTACTCCAACAAACATTA 59.411 36.000 0.00 0.00 39.34 1.90
5190 7242 4.399934 ACGTGGTTTACTCCAACAAACATT 59.600 37.500 0.00 0.00 39.34 2.71
5191 7243 3.949113 ACGTGGTTTACTCCAACAAACAT 59.051 39.130 0.00 0.00 39.34 2.71
5192 7244 3.345414 ACGTGGTTTACTCCAACAAACA 58.655 40.909 0.00 0.00 39.34 2.83
5193 7245 4.359971 AACGTGGTTTACTCCAACAAAC 57.640 40.909 0.00 0.00 39.34 2.93
5194 7246 4.575645 CCTAACGTGGTTTACTCCAACAAA 59.424 41.667 0.00 0.00 39.34 2.83
5195 7247 4.128643 CCTAACGTGGTTTACTCCAACAA 58.871 43.478 0.00 0.00 39.34 2.83
5200 7252 3.320626 GTCACCTAACGTGGTTTACTCC 58.679 50.000 0.00 0.00 43.23 3.85
5230 7282 3.618351 GTCACCTGACTAGCTAGTACCA 58.382 50.000 26.11 18.78 41.65 3.25
5253 7305 5.748670 TCCATGCACTAACTAACTAACCA 57.251 39.130 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.