Multiple sequence alignment - TraesCS7D01G384800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G384800 chr7D 100.000 3975 0 0 1 3975 498710847 498714821 0.000000e+00 7341.0
1 TraesCS7D01G384800 chr7D 89.706 68 4 3 3470 3536 190083276 190083211 2.550000e-12 84.2
2 TraesCS7D01G384800 chr7B 93.076 3683 156 42 341 3975 527035727 527039358 0.000000e+00 5297.0
3 TraesCS7D01G384800 chr7B 85.461 282 15 14 124 382 527023480 527023758 1.820000e-68 270.0
4 TraesCS7D01G384800 chr7B 91.603 131 10 1 125 254 527034497 527034627 3.160000e-41 180.0
5 TraesCS7D01G384800 chr7B 92.523 107 8 0 1 107 527023388 527023494 1.910000e-33 154.0
6 TraesCS7D01G384800 chr7A 95.616 1688 53 5 448 2130 564607631 564609302 0.000000e+00 2687.0
7 TraesCS7D01G384800 chr7A 91.493 1822 78 32 2176 3975 564609305 564611071 0.000000e+00 2435.0
8 TraesCS7D01G384800 chr7A 94.355 124 7 0 125 248 564607087 564607210 1.460000e-44 191.0
9 TraesCS7D01G384800 chr7A 95.370 108 5 0 2 109 564606995 564607102 5.280000e-39 172.0
10 TraesCS7D01G384800 chr7A 96.491 57 2 0 3470 3526 732467621 732467565 1.180000e-15 95.3
11 TraesCS7D01G384800 chr4B 94.915 59 3 0 3468 3526 465733302 465733244 4.230000e-15 93.5
12 TraesCS7D01G384800 chr5D 94.737 57 3 0 3471 3527 9120372 9120316 5.470000e-14 89.8
13 TraesCS7D01G384800 chr6B 90.476 63 6 0 3464 3526 16341370 16341432 2.550000e-12 84.2
14 TraesCS7D01G384800 chr3D 90.625 64 3 3 3468 3530 126949103 126949042 9.160000e-12 82.4
15 TraesCS7D01G384800 chr3B 90.625 64 3 3 3468 3530 181288868 181288807 9.160000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G384800 chr7D 498710847 498714821 3974 False 7341.00 7341 100.0000 1 3975 1 chr7D.!!$F1 3974
1 TraesCS7D01G384800 chr7B 527034497 527039358 4861 False 2738.50 5297 92.3395 125 3975 2 chr7B.!!$F2 3850
2 TraesCS7D01G384800 chr7A 564606995 564611071 4076 False 1371.25 2687 94.2085 2 3975 4 chr7A.!!$F1 3973

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
751 2086 0.039527 AAAAACTTGCTTAGCGCCCG 60.040 50.000 2.29 0.00 38.05 6.13 F
923 2261 2.018515 GCTTCCACTACTCGAGCTAGT 58.981 52.381 13.61 15.73 0.00 2.57 F
2172 3522 0.685097 ACATTACACCGTGTCAGGCT 59.315 50.000 7.63 0.00 33.69 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 3048 0.514691 GCACGTGAGCAAAAGAGAGG 59.485 55.0 22.23 0.0 0.00 3.69 R
2218 3590 0.594540 GCAATGCAAAGCACGACACA 60.595 50.0 0.00 0.0 43.04 3.72 R
3584 4983 0.391130 CCGAAGGCCGAGTTGAATCA 60.391 55.0 0.00 0.0 46.14 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 6.367421 CGAAAGTATCCGATTGTTGTTTTGA 58.633 36.000 0.00 0.00 0.00 2.69
130 131 4.599047 TTTGCGGGTGAAAGAAAATGAT 57.401 36.364 0.00 0.00 0.00 2.45
153 154 0.322816 ATTTCTGTGTGGGCGAGCAT 60.323 50.000 0.00 0.00 0.00 3.79
162 163 2.963101 TGTGGGCGAGCATACTTAGTAT 59.037 45.455 0.00 0.00 0.00 2.12
215 216 6.309494 CACACATTTGATGAAAGCATTAGGTG 59.691 38.462 0.00 0.00 34.11 4.00
248 249 2.224499 TGTGAGGTGCAATTGAGTGCTA 60.224 45.455 10.34 0.00 45.17 3.49
249 250 2.417933 GTGAGGTGCAATTGAGTGCTAG 59.582 50.000 10.34 0.00 45.17 3.42
250 251 2.038952 TGAGGTGCAATTGAGTGCTAGT 59.961 45.455 10.34 0.00 45.17 2.57
251 252 2.417933 GAGGTGCAATTGAGTGCTAGTG 59.582 50.000 10.34 0.00 45.17 2.74
263 1336 4.211164 TGAGTGCTAGTGTTGATTGAAACG 59.789 41.667 0.00 0.00 32.47 3.60
272 1345 1.577468 TGATTGAAACGTCACGTGCT 58.423 45.000 11.67 0.00 39.99 4.40
273 1346 1.937223 TGATTGAAACGTCACGTGCTT 59.063 42.857 11.67 0.00 39.99 3.91
275 1348 3.743911 TGATTGAAACGTCACGTGCTTAT 59.256 39.130 11.67 0.00 39.99 1.73
276 1349 4.212425 TGATTGAAACGTCACGTGCTTATT 59.788 37.500 11.67 3.36 39.99 1.40
277 1350 4.539509 TTGAAACGTCACGTGCTTATTT 57.460 36.364 11.67 8.53 39.99 1.40
278 1351 3.867665 TGAAACGTCACGTGCTTATTTG 58.132 40.909 11.67 0.00 39.99 2.32
279 1352 3.310227 TGAAACGTCACGTGCTTATTTGT 59.690 39.130 11.67 0.00 39.99 2.83
280 1353 4.507021 TGAAACGTCACGTGCTTATTTGTA 59.493 37.500 11.67 0.00 39.99 2.41
311 1384 8.336801 ACAAAATATGTTTGTAGTCCCTTCTC 57.663 34.615 11.75 0.00 40.06 2.87
312 1385 8.164070 ACAAAATATGTTTGTAGTCCCTTCTCT 58.836 33.333 11.75 0.00 40.06 3.10
314 1387 8.794335 AAATATGTTTGTAGTCCCTTCTCTTC 57.206 34.615 0.00 0.00 0.00 2.87
315 1388 7.741554 ATATGTTTGTAGTCCCTTCTCTTCT 57.258 36.000 0.00 0.00 0.00 2.85
316 1389 8.840200 ATATGTTTGTAGTCCCTTCTCTTCTA 57.160 34.615 0.00 0.00 0.00 2.10
317 1390 7.741554 ATGTTTGTAGTCCCTTCTCTTCTAT 57.258 36.000 0.00 0.00 0.00 1.98
318 1391 8.840200 ATGTTTGTAGTCCCTTCTCTTCTATA 57.160 34.615 0.00 0.00 0.00 1.31
319 1392 8.840200 TGTTTGTAGTCCCTTCTCTTCTATAT 57.160 34.615 0.00 0.00 0.00 0.86
320 1393 8.696374 TGTTTGTAGTCCCTTCTCTTCTATATG 58.304 37.037 0.00 0.00 0.00 1.78
324 1627 9.742144 TGTAGTCCCTTCTCTTCTATATGTATC 57.258 37.037 0.00 0.00 0.00 2.24
397 1700 2.923020 CAACAAATTCCCATAGCAACGC 59.077 45.455 0.00 0.00 0.00 4.84
437 1744 5.452777 GCGGAAATTAGCAGAATAATGACC 58.547 41.667 0.00 0.00 0.00 4.02
438 1745 5.008613 GCGGAAATTAGCAGAATAATGACCA 59.991 40.000 0.00 0.00 0.00 4.02
568 1895 1.078497 CCATTAGCTGCCCACACGA 60.078 57.895 0.00 0.00 0.00 4.35
582 1909 1.807165 CACGACCAGACCAGATGCG 60.807 63.158 0.00 0.00 0.00 4.73
751 2086 0.039527 AAAAACTTGCTTAGCGCCCG 60.040 50.000 2.29 0.00 38.05 6.13
923 2261 2.018515 GCTTCCACTACTCGAGCTAGT 58.981 52.381 13.61 15.73 0.00 2.57
1711 3053 2.737830 GCGCCTCATACCCCTCTC 59.262 66.667 0.00 0.00 0.00 3.20
1733 3075 3.863681 TGCTCACGTGCAAAATTCC 57.136 47.368 11.67 0.00 40.29 3.01
1748 3090 5.263185 CAAAATTCCTTATCGCTACGTTGG 58.737 41.667 0.00 0.00 0.00 3.77
1762 3104 2.337583 ACGTTGGTCAATGATCAGACG 58.662 47.619 20.82 20.82 35.27 4.18
1923 3265 2.481471 GCCAATCTAACCCGGCAGC 61.481 63.158 0.00 0.00 44.25 5.25
2053 3395 2.612200 TGGAACACAAGCTACGCAC 58.388 52.632 0.00 0.00 0.00 5.34
2118 3468 1.610522 ACCTCTGCAAGCAACAATGAC 59.389 47.619 0.00 0.00 0.00 3.06
2134 3484 5.969423 ACAATGACCAGCCAAAGATAATTG 58.031 37.500 0.00 0.00 0.00 2.32
2135 3485 4.660789 ATGACCAGCCAAAGATAATTGC 57.339 40.909 0.00 0.00 0.00 3.56
2137 3487 3.444742 TGACCAGCCAAAGATAATTGCAG 59.555 43.478 0.00 0.00 0.00 4.41
2138 3488 3.696051 GACCAGCCAAAGATAATTGCAGA 59.304 43.478 0.00 0.00 0.00 4.26
2139 3489 3.445096 ACCAGCCAAAGATAATTGCAGAC 59.555 43.478 0.00 0.00 0.00 3.51
2169 3519 2.157668 GCTGAACATTACACCGTGTCAG 59.842 50.000 7.63 9.19 32.08 3.51
2170 3520 2.736721 CTGAACATTACACCGTGTCAGG 59.263 50.000 7.63 1.24 37.30 3.86
2171 3521 1.463444 GAACATTACACCGTGTCAGGC 59.537 52.381 7.63 0.00 33.69 4.85
2172 3522 0.685097 ACATTACACCGTGTCAGGCT 59.315 50.000 7.63 0.00 33.69 4.58
2173 3523 1.078709 CATTACACCGTGTCAGGCTG 58.921 55.000 7.63 8.58 33.69 4.85
2174 3524 0.685097 ATTACACCGTGTCAGGCTGT 59.315 50.000 15.27 0.00 33.69 4.40
2218 3590 2.757868 ACTGAAGCTATTCTCTGACGCT 59.242 45.455 0.00 0.00 36.33 5.07
2254 3626 3.052082 CAGCAAGTGACCTGCGGG 61.052 66.667 11.02 11.02 38.88 6.13
2532 3904 4.351938 AGGTTCTACGTGCGCGCA 62.352 61.111 33.09 33.09 42.83 6.09
2571 3943 1.210478 ACCTGGATGATCAACCGGAAG 59.790 52.381 27.77 16.39 34.76 3.46
2697 4069 0.402121 AAGAAGGGTGAGGGTCTTGC 59.598 55.000 0.00 0.00 0.00 4.01
2713 4085 2.039480 TCTTGCTGGCTCAGTTTCAGAT 59.961 45.455 4.45 0.00 33.43 2.90
2734 4106 8.147704 TCAGATCACAACAATGTAGTAAGTCAA 58.852 33.333 0.00 0.00 37.82 3.18
2744 4116 5.839262 TGTAGTAAGTCAAATGTTCAGCG 57.161 39.130 0.00 0.00 0.00 5.18
2797 4169 0.916358 ACAGGTTCATCAGGGAGGGG 60.916 60.000 0.00 0.00 0.00 4.79
3056 4428 6.103330 TGACTATATTAACAGTTTCAGCGCA 58.897 36.000 11.47 0.00 0.00 6.09
3058 4430 7.042725 TGACTATATTAACAGTTTCAGCGCATC 60.043 37.037 11.47 0.00 0.00 3.91
3063 4435 0.099968 CAGTTTCAGCGCATCCCATG 59.900 55.000 11.47 0.00 0.00 3.66
3145 4524 2.791347 TATAGGCTTGCCGGTTTGAA 57.209 45.000 1.90 0.00 0.00 2.69
3150 4529 1.372128 CTTGCCGGTTTGAAGCTGC 60.372 57.895 1.90 0.00 37.19 5.25
3168 4547 2.478547 GCGGTAGCAGTACTCTCTTC 57.521 55.000 0.00 0.00 44.35 2.87
3169 4548 2.018515 GCGGTAGCAGTACTCTCTTCT 58.981 52.381 0.00 0.00 44.35 2.85
3170 4549 2.424246 GCGGTAGCAGTACTCTCTTCTT 59.576 50.000 0.00 0.00 44.35 2.52
3171 4550 3.487879 GCGGTAGCAGTACTCTCTTCTTC 60.488 52.174 0.00 0.00 44.35 2.87
3172 4551 3.942748 CGGTAGCAGTACTCTCTTCTTCT 59.057 47.826 0.00 0.00 0.00 2.85
3173 4552 4.396790 CGGTAGCAGTACTCTCTTCTTCTT 59.603 45.833 0.00 0.00 0.00 2.52
3177 4556 6.267496 AGCAGTACTCTCTTCTTCTTCTTC 57.733 41.667 0.00 0.00 0.00 2.87
3180 4559 6.806739 GCAGTACTCTCTTCTTCTTCTTCTTC 59.193 42.308 0.00 0.00 0.00 2.87
3182 4561 8.576442 CAGTACTCTCTTCTTCTTCTTCTTCTT 58.424 37.037 0.00 0.00 0.00 2.52
3254 4640 4.793216 CAGCGTGCTTAAACCATTGTAATC 59.207 41.667 0.00 0.00 0.00 1.75
3259 4645 7.081349 CGTGCTTAAACCATTGTAATCTTTCA 58.919 34.615 0.00 0.00 0.00 2.69
3260 4646 7.060633 CGTGCTTAAACCATTGTAATCTTTCAC 59.939 37.037 0.00 0.00 0.00 3.18
3316 4702 0.863144 CATTGTTTGCAGCAAGGTGC 59.137 50.000 16.62 16.62 45.46 5.01
3377 4770 6.321848 TCAGCCATATATGCTTTTCACATG 57.678 37.500 7.24 0.00 36.81 3.21
3378 4771 5.829391 TCAGCCATATATGCTTTTCACATGT 59.171 36.000 7.24 0.00 36.81 3.21
3379 4772 6.997476 TCAGCCATATATGCTTTTCACATGTA 59.003 34.615 7.24 0.00 36.81 2.29
3584 4983 4.411256 TGTTGAAGAAGTCGTTAACCCT 57.589 40.909 0.00 0.00 0.00 4.34
3585 4984 4.124238 TGTTGAAGAAGTCGTTAACCCTG 58.876 43.478 0.00 0.00 0.00 4.45
3595 4994 3.367025 GTCGTTAACCCTGATTCAACTCG 59.633 47.826 0.00 0.00 0.00 4.18
3604 5003 1.078426 ATTCAACTCGGCCTTCGGG 60.078 57.895 0.00 0.00 46.65 5.14
3610 5009 4.388499 TCGGCCTTCGGGAACAGC 62.388 66.667 0.00 0.00 39.77 4.40
3613 5012 2.041115 GGCCTTCGGGAACAGCTTC 61.041 63.158 0.00 0.00 37.25 3.86
3642 5042 6.745794 TTTCTTTTTGATGAGGGTGGAAAT 57.254 33.333 0.00 0.00 0.00 2.17
3645 5045 5.951747 TCTTTTTGATGAGGGTGGAAATAGG 59.048 40.000 0.00 0.00 0.00 2.57
3659 5060 9.197306 GGGTGGAAATAGGTTTTTCAATACTAT 57.803 33.333 0.00 0.00 37.34 2.12
3849 5260 1.153086 AGGAATGACAGCATCCCGC 60.153 57.895 2.06 0.00 33.46 6.13
3872 5283 1.888018 CGGCCTACGGACAAGAAGA 59.112 57.895 0.00 0.00 39.42 2.87
3917 5328 4.045783 GCTAATCCAAGTAGAAGAGCGTC 58.954 47.826 0.00 0.00 0.00 5.19
3947 5358 1.538047 GCATGTTCTTTGCCTCCTGA 58.462 50.000 0.00 0.00 33.95 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.030452 GCCACACTCCACGCTTGC 62.030 66.667 0.00 0.00 0.00 4.01
10 11 0.892755 TCGGATACTTTCGCCACACT 59.107 50.000 0.00 0.00 0.00 3.55
12 13 2.276201 CAATCGGATACTTTCGCCACA 58.724 47.619 0.00 0.00 0.00 4.17
15 16 2.676342 ACAACAATCGGATACTTTCGCC 59.324 45.455 0.00 0.00 0.00 5.54
41 42 6.560003 TGTTGTCTGGATTACTGGACATAT 57.440 37.500 0.00 0.00 38.29 1.78
109 110 4.599047 ATCATTTTCTTTCACCCGCAAA 57.401 36.364 0.00 0.00 0.00 3.68
110 111 5.913137 ATATCATTTTCTTTCACCCGCAA 57.087 34.783 0.00 0.00 0.00 4.85
111 112 7.581213 ATTATATCATTTTCTTTCACCCGCA 57.419 32.000 0.00 0.00 0.00 5.69
112 113 8.871686 AAATTATATCATTTTCTTTCACCCGC 57.128 30.769 0.00 0.00 0.00 6.13
121 122 8.416329 GCCCACACAGAAATTATATCATTTTCT 58.584 33.333 0.00 0.30 39.61 2.52
122 123 7.379529 CGCCCACACAGAAATTATATCATTTTC 59.620 37.037 0.00 0.00 0.00 2.29
123 124 7.068103 TCGCCCACACAGAAATTATATCATTTT 59.932 33.333 0.00 0.00 0.00 1.82
130 131 3.202906 GCTCGCCCACACAGAAATTATA 58.797 45.455 0.00 0.00 0.00 0.98
202 203 5.705905 ACTTAGTGTTCCACCTAATGCTTTC 59.294 40.000 0.00 0.00 34.49 2.62
215 216 2.548480 GCACCTCACAACTTAGTGTTCC 59.452 50.000 0.00 0.00 40.37 3.62
248 249 2.933906 ACGTGACGTTTCAATCAACACT 59.066 40.909 4.10 0.00 36.35 3.55
249 250 3.026349 CACGTGACGTTTCAATCAACAC 58.974 45.455 10.90 0.00 38.32 3.32
250 251 2.537931 GCACGTGACGTTTCAATCAACA 60.538 45.455 22.23 0.00 38.32 3.33
251 252 2.034076 GCACGTGACGTTTCAATCAAC 58.966 47.619 22.23 0.00 38.32 3.18
263 1336 6.469595 TGTTTGTTTACAAATAAGCACGTGAC 59.530 34.615 22.23 10.94 46.12 3.67
302 1375 8.644374 AGTGATACATATAGAAGAGAAGGGAC 57.356 38.462 0.00 0.00 0.00 4.46
340 1643 9.393249 CATGAACAACATTGTACGTAGAATTTT 57.607 29.630 14.76 12.28 41.31 1.82
345 1648 7.716768 TTTCATGAACAACATTGTACGTAGA 57.283 32.000 7.89 0.00 41.31 2.59
346 1649 8.948853 ATTTTCATGAACAACATTGTACGTAG 57.051 30.769 7.89 0.00 41.31 3.51
349 1652 8.720909 TGTATTTTCATGAACAACATTGTACG 57.279 30.769 7.89 0.00 41.31 3.67
397 1700 2.666190 CCGGCGCATGTATCCAGG 60.666 66.667 10.83 0.00 0.00 4.45
416 1721 7.500559 AGAGTGGTCATTATTCTGCTAATTTCC 59.499 37.037 0.00 0.00 0.00 3.13
568 1895 1.078848 GCTTCGCATCTGGTCTGGT 60.079 57.895 0.00 0.00 0.00 4.00
582 1909 1.168714 CTAGTGGTGGCTTTGGCTTC 58.831 55.000 0.00 0.00 38.73 3.86
713 2040 0.676184 TATTCGGCCTGCTCTGCTAG 59.324 55.000 0.00 0.00 0.00 3.42
714 2041 1.119684 TTATTCGGCCTGCTCTGCTA 58.880 50.000 0.00 0.00 0.00 3.49
715 2042 0.253044 TTTATTCGGCCTGCTCTGCT 59.747 50.000 0.00 0.00 0.00 4.24
716 2043 1.094785 TTTTATTCGGCCTGCTCTGC 58.905 50.000 0.00 0.00 0.00 4.26
717 2044 2.749621 AGTTTTTATTCGGCCTGCTCTG 59.250 45.455 0.00 0.00 0.00 3.35
718 2045 3.073274 AGTTTTTATTCGGCCTGCTCT 57.927 42.857 0.00 0.00 0.00 4.09
719 2046 3.501950 CAAGTTTTTATTCGGCCTGCTC 58.498 45.455 0.00 0.00 0.00 4.26
923 2261 1.726791 GAGCAAAAGTGATCGAGCGAA 59.273 47.619 0.00 0.00 28.93 4.70
1706 3048 0.514691 GCACGTGAGCAAAAGAGAGG 59.485 55.000 22.23 0.00 0.00 3.69
1733 3075 4.109766 TCATTGACCAACGTAGCGATAAG 58.890 43.478 0.00 0.00 0.00 1.73
1748 3090 1.359848 AACGGCGTCTGATCATTGAC 58.640 50.000 15.17 0.00 0.00 3.18
1762 3104 3.242936 TGCTAAACAAGTGAAGAAACGGC 60.243 43.478 0.00 0.00 0.00 5.68
1923 3265 2.633509 GCAGCTCCAGCAGTTTGGG 61.634 63.158 0.48 0.00 45.16 4.12
2050 3392 0.746659 AAGCAAAAGTGGTCTGGTGC 59.253 50.000 0.00 0.00 33.24 5.01
2051 3393 2.023673 TGAAGCAAAAGTGGTCTGGTG 58.976 47.619 0.00 0.00 33.24 4.17
2052 3394 2.024414 GTGAAGCAAAAGTGGTCTGGT 58.976 47.619 0.00 0.00 33.24 4.00
2053 3395 1.338020 GGTGAAGCAAAAGTGGTCTGG 59.662 52.381 0.00 0.00 33.24 3.86
2118 3468 3.444742 TGTCTGCAATTATCTTTGGCTGG 59.555 43.478 0.00 0.00 0.00 4.85
2134 3484 2.159254 TGTTCAGCCTTTTTGTGTCTGC 60.159 45.455 0.00 0.00 0.00 4.26
2135 3485 3.781079 TGTTCAGCCTTTTTGTGTCTG 57.219 42.857 0.00 0.00 0.00 3.51
2137 3487 5.458779 GTGTAATGTTCAGCCTTTTTGTGTC 59.541 40.000 0.00 0.00 0.00 3.67
2138 3488 5.348164 GTGTAATGTTCAGCCTTTTTGTGT 58.652 37.500 0.00 0.00 0.00 3.72
2139 3489 4.744631 GGTGTAATGTTCAGCCTTTTTGTG 59.255 41.667 0.00 0.00 0.00 3.33
2170 3520 4.360027 CACACGCACGCTGACAGC 62.360 66.667 17.84 17.84 38.02 4.40
2171 3521 4.360027 GCACACGCACGCTGACAG 62.360 66.667 0.00 0.00 38.36 3.51
2218 3590 0.594540 GCAATGCAAAGCACGACACA 60.595 50.000 0.00 0.00 43.04 3.72
2455 3827 2.047844 CGCCTGACAGGGTCACAG 60.048 66.667 23.09 0.00 37.67 3.66
2511 3883 1.080025 GCGCACGTAGAACCTCCTT 60.080 57.895 0.30 0.00 0.00 3.36
2532 3904 3.017581 ATCTTGGCGCCTTCCCCT 61.018 61.111 29.70 4.38 0.00 4.79
2571 3943 2.167861 GCCGTCGAAGCTGATGGTC 61.168 63.158 12.58 3.53 45.21 4.02
2613 3985 2.573869 CTCTTGAGGCTCCGCGAA 59.426 61.111 8.23 0.00 0.00 4.70
2687 4059 1.078567 CTGAGCCAGCAAGACCCTC 60.079 63.158 0.00 0.00 0.00 4.30
2697 4069 3.049708 TGTGATCTGAAACTGAGCCAG 57.950 47.619 0.00 1.16 37.52 4.85
2713 4085 8.445275 ACATTTGACTTACTACATTGTTGTGA 57.555 30.769 13.14 5.12 36.53 3.58
2773 4145 2.304180 CTCCCTGATGAACCTGTCAAGT 59.696 50.000 0.00 0.00 40.50 3.16
3007 4379 2.615447 CTGAAACTGTCAAAGCAGCTCA 59.385 45.455 0.00 0.00 39.96 4.26
3056 4428 3.016736 CTGCGAAAACCTAACATGGGAT 58.983 45.455 0.00 0.00 0.00 3.85
3058 4430 1.135402 GCTGCGAAAACCTAACATGGG 60.135 52.381 0.00 0.00 0.00 4.00
3063 4435 2.095718 CCTTCTGCTGCGAAAACCTAAC 60.096 50.000 7.95 0.00 0.00 2.34
3111 4488 7.148069 GGCAAGCCTATAAACACAACTCTAATT 60.148 37.037 3.29 0.00 0.00 1.40
3112 4489 6.318900 GGCAAGCCTATAAACACAACTCTAAT 59.681 38.462 3.29 0.00 0.00 1.73
3120 4497 1.003812 ACCGGCAAGCCTATAAACACA 59.996 47.619 9.73 0.00 0.00 3.72
3150 4529 3.942748 AGAAGAAGAGAGTACTGCTACCG 59.057 47.826 0.00 0.00 0.00 4.02
3254 4640 2.689983 AGAAAAGGTGCCTGTGTGAAAG 59.310 45.455 0.00 0.00 0.00 2.62
3259 4645 2.233271 CATGAGAAAAGGTGCCTGTGT 58.767 47.619 0.00 0.00 0.00 3.72
3260 4646 2.233271 ACATGAGAAAAGGTGCCTGTG 58.767 47.619 0.00 0.00 0.00 3.66
3458 4857 1.680735 ACTGCAAAAATGCCTCGAACA 59.319 42.857 0.00 0.00 0.00 3.18
3584 4983 0.391130 CCGAAGGCCGAGTTGAATCA 60.391 55.000 0.00 0.00 46.14 2.57
3585 4984 2.384203 CCGAAGGCCGAGTTGAATC 58.616 57.895 0.00 0.00 46.14 2.52
3604 5003 7.035612 TCAAAAAGAAAAAGGAGAAGCTGTTC 58.964 34.615 0.00 0.00 0.00 3.18
3610 5009 7.150640 CCCTCATCAAAAAGAAAAAGGAGAAG 58.849 38.462 0.00 0.00 0.00 2.85
3613 5012 6.218746 CACCCTCATCAAAAAGAAAAAGGAG 58.781 40.000 0.00 0.00 0.00 3.69
3868 5279 2.188207 GGGGCGCTTCTCCTCTTC 59.812 66.667 7.64 0.00 0.00 2.87
3917 5328 1.645034 AGAACATGCGGAAGATCGTG 58.355 50.000 0.00 0.00 0.00 4.35
3947 5358 1.601171 GCTGCTGATGGAGACCTGT 59.399 57.895 0.00 0.00 33.10 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.