Multiple sequence alignment - TraesCS7D01G384500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G384500 chr7D 100.000 2351 0 0 1 2351 498491825 498489475 0.000000e+00 4342.0
1 TraesCS7D01G384500 chr7D 98.837 86 0 1 2265 2350 461573038 461572954 4.050000e-33 152.0
2 TraesCS7D01G384500 chr7D 97.701 87 1 1 2266 2351 363554712 363554626 5.230000e-32 148.0
3 TraesCS7D01G384500 chr7D 97.701 87 1 1 2265 2351 562937828 562937913 5.230000e-32 148.0
4 TraesCS7D01G384500 chr7D 95.652 92 2 2 2261 2351 121683300 121683210 1.880000e-31 147.0
5 TraesCS7D01G384500 chr7D 85.714 105 8 5 32 131 178287117 178287219 1.150000e-18 104.0
6 TraesCS7D01G384500 chr7D 83.333 78 8 4 27 101 613209200 613209125 1.510000e-07 67.6
7 TraesCS7D01G384500 chr7B 91.198 977 33 20 731 1704 526855003 526854077 0.000000e+00 1279.0
8 TraesCS7D01G384500 chr7B 79.632 707 86 28 48 737 526859861 526859196 2.750000e-124 455.0
9 TraesCS7D01G384500 chr7B 86.932 176 16 4 1878 2053 526846974 526846806 8.580000e-45 191.0
10 TraesCS7D01G384500 chr7B 82.090 134 20 3 1 131 526859980 526859848 6.870000e-21 111.0
11 TraesCS7D01G384500 chr7A 91.982 898 28 18 719 1589 564270154 564269274 0.000000e+00 1219.0
12 TraesCS7D01G384500 chr7A 86.909 275 29 3 1969 2243 564259977 564259710 3.800000e-78 302.0
13 TraesCS7D01G384500 chr7A 89.362 141 11 2 1586 1723 564262640 564262501 8.640000e-40 174.0
14 TraesCS7D01G384500 chr7A 95.522 67 0 2 240 303 564270656 564270590 1.150000e-18 104.0
15 TraesCS7D01G384500 chr7A 92.857 70 2 2 33 100 48838904 48838972 5.350000e-17 99.0
16 TraesCS7D01G384500 chr6B 80.505 277 24 12 1126 1399 647502587 647502836 3.990000e-43 185.0
17 TraesCS7D01G384500 chr6A 82.114 246 17 13 986 1231 574818818 574819036 3.990000e-43 185.0
18 TraesCS7D01G384500 chr6D 79.273 275 24 13 1128 1399 429658676 429658920 6.720000e-36 161.0
19 TraesCS7D01G384500 chr6D 96.875 96 1 2 2257 2351 144154875 144154969 2.420000e-35 159.0
20 TraesCS7D01G384500 chr6D 95.556 90 4 0 2262 2351 55895720 55895809 6.770000e-31 145.0
21 TraesCS7D01G384500 chr3D 98.795 83 1 0 2269 2351 375720469 375720387 5.230000e-32 148.0
22 TraesCS7D01G384500 chr2D 98.795 83 1 0 2269 2351 475083656 475083574 5.230000e-32 148.0
23 TraesCS7D01G384500 chr2D 94.505 91 5 0 2261 2351 204046865 204046955 8.760000e-30 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G384500 chr7D 498489475 498491825 2350 True 4342.0 4342 100.0000 1 2351 1 chr7D.!!$R4 2350
1 TraesCS7D01G384500 chr7B 526854077 526855003 926 True 1279.0 1279 91.1980 731 1704 1 chr7B.!!$R2 973
2 TraesCS7D01G384500 chr7B 526859196 526859980 784 True 283.0 455 80.8610 1 737 2 chr7B.!!$R3 736
3 TraesCS7D01G384500 chr7A 564269274 564270656 1382 True 661.5 1219 93.7520 240 1589 2 chr7A.!!$R2 1349
4 TraesCS7D01G384500 chr7A 564259710 564262640 2930 True 238.0 302 88.1355 1586 2243 2 chr7A.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 1013 0.105593 CACATGGAGGTCCTGATCCG 59.894 60.0 0.0 0.0 38.52 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 2097 0.035739 ATGGTTCGGTGGCTTTACGT 59.964 50.0 0.0 0.0 0.0 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
100 171 4.645762 TGCCATGCGCTTCAATAATAAA 57.354 36.364 9.73 0.00 38.78 1.40
106 177 6.696583 CCATGCGCTTCAATAATAAATTGTCA 59.303 34.615 9.73 0.00 0.00 3.58
276 347 3.290710 AGCAAACTTGACTTGTGGACAT 58.709 40.909 0.00 0.00 0.00 3.06
279 350 5.009010 AGCAAACTTGACTTGTGGACATTAG 59.991 40.000 0.00 0.00 0.00 1.73
316 588 9.927668 TTAAATTTGCCATCTTCTAAAAAGAGG 57.072 29.630 0.00 0.00 0.00 3.69
317 589 7.544804 AATTTGCCATCTTCTAAAAAGAGGT 57.455 32.000 0.00 0.00 0.00 3.85
363 650 1.517257 GTCGATGCTCACGTCCCTG 60.517 63.158 0.00 0.00 0.00 4.45
391 678 1.448922 GGTGTGCGGGCAGTGTTTTA 61.449 55.000 0.00 0.00 0.00 1.52
410 697 5.505165 TTTAACTAGTAAAGCGTTCGCTG 57.495 39.130 20.05 9.12 41.76 5.18
426 713 2.151202 CGCTGGGTTTTGTACTCACAT 58.849 47.619 0.00 0.00 32.52 3.21
452 739 7.595875 TCGAACAAGTTAATAAATCTGACGTGA 59.404 33.333 0.00 0.00 0.00 4.35
455 742 8.603242 ACAAGTTAATAAATCTGACGTGACTT 57.397 30.769 0.00 0.00 0.00 3.01
475 762 0.962356 CTGTCCCTGCGCCAAGATTT 60.962 55.000 4.18 0.00 0.00 2.17
496 783 0.456142 TGCAACGAATCCGACGAGAG 60.456 55.000 0.00 0.00 39.50 3.20
497 784 0.179171 GCAACGAATCCGACGAGAGA 60.179 55.000 0.00 0.00 39.50 3.10
498 785 1.816370 CAACGAATCCGACGAGAGAG 58.184 55.000 0.00 0.00 39.50 3.20
499 786 1.397343 CAACGAATCCGACGAGAGAGA 59.603 52.381 0.00 0.00 39.50 3.10
500 787 1.292061 ACGAATCCGACGAGAGAGAG 58.708 55.000 0.00 0.00 39.50 3.20
501 788 1.134759 ACGAATCCGACGAGAGAGAGA 60.135 52.381 0.00 0.00 39.50 3.10
502 789 1.525197 CGAATCCGACGAGAGAGAGAG 59.475 57.143 0.00 0.00 38.22 3.20
503 790 2.800273 CGAATCCGACGAGAGAGAGAGA 60.800 54.545 0.00 0.00 38.22 3.10
504 791 2.526304 ATCCGACGAGAGAGAGAGAG 57.474 55.000 0.00 0.00 0.00 3.20
505 792 1.476477 TCCGACGAGAGAGAGAGAGA 58.524 55.000 0.00 0.00 0.00 3.10
506 793 1.407618 TCCGACGAGAGAGAGAGAGAG 59.592 57.143 0.00 0.00 0.00 3.20
507 794 1.407618 CCGACGAGAGAGAGAGAGAGA 59.592 57.143 0.00 0.00 0.00 3.10
508 795 2.543861 CCGACGAGAGAGAGAGAGAGAG 60.544 59.091 0.00 0.00 0.00 3.20
509 796 2.357952 CGACGAGAGAGAGAGAGAGAGA 59.642 54.545 0.00 0.00 0.00 3.10
510 797 3.549019 CGACGAGAGAGAGAGAGAGAGAG 60.549 56.522 0.00 0.00 0.00 3.20
511 798 3.632333 ACGAGAGAGAGAGAGAGAGAGA 58.368 50.000 0.00 0.00 0.00 3.10
512 799 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
513 800 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
514 801 4.023279 CGAGAGAGAGAGAGAGAGAGAGAG 60.023 54.167 0.00 0.00 0.00 3.20
515 802 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
607 894 6.252995 TCAAATGCTACAGGGTTTATCCTTT 58.747 36.000 0.00 0.00 34.31 3.11
615 902 5.379187 ACAGGGTTTATCCTTTACAAACGT 58.621 37.500 0.00 0.00 34.31 3.99
655 942 2.835701 TAGGGCAAGTGCGAGCGAAG 62.836 60.000 0.00 0.00 43.26 3.79
656 943 3.044305 GGCAAGTGCGAGCGAAGT 61.044 61.111 0.00 0.00 43.26 3.01
657 944 1.736645 GGCAAGTGCGAGCGAAGTA 60.737 57.895 0.00 0.00 43.26 2.24
689 985 5.662674 TTTTCCTTCTCAGGTCTACTAGC 57.337 43.478 0.00 0.00 41.69 3.42
690 986 4.317530 TTCCTTCTCAGGTCTACTAGCA 57.682 45.455 0.00 0.00 41.69 3.49
692 988 4.673968 TCCTTCTCAGGTCTACTAGCAAA 58.326 43.478 0.00 0.00 41.69 3.68
693 989 4.707448 TCCTTCTCAGGTCTACTAGCAAAG 59.293 45.833 0.00 0.00 41.69 2.77
694 990 4.464597 CCTTCTCAGGTCTACTAGCAAAGT 59.535 45.833 0.00 0.00 37.55 2.66
695 991 5.652891 CCTTCTCAGGTCTACTAGCAAAGTA 59.347 44.000 0.00 0.00 36.10 2.24
696 992 6.322712 CCTTCTCAGGTCTACTAGCAAAGTAT 59.677 42.308 0.00 0.00 36.39 2.12
697 993 6.701145 TCTCAGGTCTACTAGCAAAGTATG 57.299 41.667 0.00 0.00 39.96 2.39
711 1007 1.885049 AGTATGCACATGGAGGTCCT 58.115 50.000 0.00 0.00 36.82 3.85
717 1013 0.105593 CACATGGAGGTCCTGATCCG 59.894 60.000 0.00 0.00 38.52 4.18
729 1025 2.900838 GATCCGAGGACCGCTCGA 60.901 66.667 11.79 0.00 46.06 4.04
872 1169 2.677573 AAGCCGCCAAAAACGCAGAC 62.678 55.000 0.00 0.00 0.00 3.51
968 1285 2.166664 CCCCGTACCTCTTCTGAGAAAG 59.833 54.545 0.00 0.00 42.73 2.62
1333 1653 1.642037 CCAGTCCGACGACGAGCTTA 61.642 60.000 9.28 0.00 44.28 3.09
1410 1731 3.059386 TGGCGCCGGATGGTTTTC 61.059 61.111 23.90 0.00 37.67 2.29
1412 1733 3.428282 GCGCCGGATGGTTTTCGT 61.428 61.111 5.05 0.00 37.67 3.85
1532 1855 9.080915 GTGTTGTTAAGTATAAGTAGGTAGTGC 57.919 37.037 0.00 0.00 0.00 4.40
1589 1912 8.599624 AATTGGATTTGATAAAGTGTGATCCT 57.400 30.769 0.00 0.00 34.19 3.24
1596 1919 8.862325 TTTGATAAAGTGTGATCCTTACATGT 57.138 30.769 2.69 2.69 0.00 3.21
1597 1920 8.492673 TTGATAAAGTGTGATCCTTACATGTC 57.507 34.615 0.00 0.00 0.00 3.06
1651 1974 4.010667 TCCTTACATGGTTAGCAACGTT 57.989 40.909 0.00 0.00 0.00 3.99
1706 2032 3.496884 GCAGAAAACTACCACAATCACGA 59.503 43.478 0.00 0.00 0.00 4.35
1707 2033 4.154195 GCAGAAAACTACCACAATCACGAT 59.846 41.667 0.00 0.00 0.00 3.73
1709 2035 5.408299 CAGAAAACTACCACAATCACGATGA 59.592 40.000 0.00 0.00 0.00 2.92
1710 2036 5.995282 AGAAAACTACCACAATCACGATGAA 59.005 36.000 0.00 0.00 0.00 2.57
1711 2037 6.485313 AGAAAACTACCACAATCACGATGAAA 59.515 34.615 0.00 0.00 0.00 2.69
1712 2038 6.627395 AAACTACCACAATCACGATGAAAA 57.373 33.333 0.00 0.00 0.00 2.29
1713 2039 6.817765 AACTACCACAATCACGATGAAAAT 57.182 33.333 0.00 0.00 0.00 1.82
1714 2040 6.422776 ACTACCACAATCACGATGAAAATC 57.577 37.500 0.00 0.00 0.00 2.17
1715 2041 5.937540 ACTACCACAATCACGATGAAAATCA 59.062 36.000 0.00 0.00 0.00 2.57
1716 2042 5.046910 ACCACAATCACGATGAAAATCAC 57.953 39.130 0.00 0.00 0.00 3.06
1717 2043 4.082787 ACCACAATCACGATGAAAATCACC 60.083 41.667 0.00 0.00 0.00 4.02
1718 2044 4.082841 CCACAATCACGATGAAAATCACCA 60.083 41.667 0.00 0.00 0.00 4.17
1722 2048 7.116662 CACAATCACGATGAAAATCACCAAAAT 59.883 33.333 0.00 0.00 0.00 1.82
1727 2053 5.925969 ACGATGAAAATCACCAAAATTCACC 59.074 36.000 0.00 0.00 33.29 4.02
1729 2055 6.128849 CGATGAAAATCACCAAAATTCACCAC 60.129 38.462 0.00 0.00 33.29 4.16
1735 2061 5.461032 TCACCAAAATTCACCACAATACC 57.539 39.130 0.00 0.00 0.00 2.73
1738 2064 5.925969 CACCAAAATTCACCACAATACCTTC 59.074 40.000 0.00 0.00 0.00 3.46
1745 2071 2.890311 CACCACAATACCTTCTGCCAAA 59.110 45.455 0.00 0.00 0.00 3.28
1756 2082 3.636764 CCTTCTGCCAAAGTAAAACCACT 59.363 43.478 0.00 0.00 0.00 4.00
1758 2084 3.892284 TCTGCCAAAGTAAAACCACTGA 58.108 40.909 0.00 0.00 0.00 3.41
1759 2085 4.274147 TCTGCCAAAGTAAAACCACTGAA 58.726 39.130 0.00 0.00 0.00 3.02
1760 2086 4.338118 TCTGCCAAAGTAAAACCACTGAAG 59.662 41.667 0.00 0.00 0.00 3.02
1761 2087 4.274147 TGCCAAAGTAAAACCACTGAAGA 58.726 39.130 0.00 0.00 0.00 2.87
1762 2088 4.892934 TGCCAAAGTAAAACCACTGAAGAT 59.107 37.500 0.00 0.00 0.00 2.40
1763 2089 6.065374 TGCCAAAGTAAAACCACTGAAGATA 58.935 36.000 0.00 0.00 0.00 1.98
1764 2090 6.547880 TGCCAAAGTAAAACCACTGAAGATAA 59.452 34.615 0.00 0.00 0.00 1.75
1765 2091 7.068839 TGCCAAAGTAAAACCACTGAAGATAAA 59.931 33.333 0.00 0.00 0.00 1.40
1766 2092 7.923878 GCCAAAGTAAAACCACTGAAGATAAAA 59.076 33.333 0.00 0.00 0.00 1.52
1784 2110 3.883631 AAAAAGTACGTAAAGCCACCG 57.116 42.857 0.00 0.00 0.00 4.94
1785 2111 2.818130 AAAGTACGTAAAGCCACCGA 57.182 45.000 0.00 0.00 0.00 4.69
1786 2112 2.818130 AAGTACGTAAAGCCACCGAA 57.182 45.000 0.00 0.00 0.00 4.30
1787 2113 2.070262 AGTACGTAAAGCCACCGAAC 57.930 50.000 0.00 0.00 0.00 3.95
1788 2114 1.070821 GTACGTAAAGCCACCGAACC 58.929 55.000 0.00 0.00 0.00 3.62
1789 2115 0.678395 TACGTAAAGCCACCGAACCA 59.322 50.000 0.00 0.00 0.00 3.67
1790 2116 0.035739 ACGTAAAGCCACCGAACCAT 59.964 50.000 0.00 0.00 0.00 3.55
1791 2117 0.446222 CGTAAAGCCACCGAACCATG 59.554 55.000 0.00 0.00 0.00 3.66
1792 2118 1.530323 GTAAAGCCACCGAACCATGT 58.470 50.000 0.00 0.00 0.00 3.21
1793 2119 2.702261 GTAAAGCCACCGAACCATGTA 58.298 47.619 0.00 0.00 0.00 2.29
1794 2120 2.507407 AAAGCCACCGAACCATGTAT 57.493 45.000 0.00 0.00 0.00 2.29
1797 2123 2.802719 AGCCACCGAACCATGTATTTT 58.197 42.857 0.00 0.00 0.00 1.82
1830 2156 7.148239 CCTTAAATACCGATGAAGTGCTCTTTT 60.148 37.037 2.00 0.00 33.64 2.27
1831 2157 6.575162 AAATACCGATGAAGTGCTCTTTTT 57.425 33.333 2.00 0.00 33.64 1.94
1832 2158 3.904136 ACCGATGAAGTGCTCTTTTTG 57.096 42.857 2.00 0.00 33.64 2.44
1834 2160 4.074970 ACCGATGAAGTGCTCTTTTTGAT 58.925 39.130 2.00 0.00 33.64 2.57
1836 2162 5.122396 ACCGATGAAGTGCTCTTTTTGATAC 59.878 40.000 2.00 0.00 33.64 2.24
1837 2163 5.122239 CCGATGAAGTGCTCTTTTTGATACA 59.878 40.000 2.00 0.00 33.64 2.29
1849 2175 3.989705 TTTGATACATTCTGACACGCG 57.010 42.857 3.53 3.53 0.00 6.01
1851 2177 3.768468 TGATACATTCTGACACGCGTA 57.232 42.857 13.44 0.00 0.00 4.42
1919 2245 3.754965 TGACTTGGTCAATTTCCTCCTG 58.245 45.455 0.00 0.00 39.78 3.86
1922 2248 2.496899 TGGTCAATTTCCTCCTGCTC 57.503 50.000 0.00 0.00 0.00 4.26
1936 2262 4.943705 CCTCCTGCTCTCTAGTGATCTATC 59.056 50.000 0.00 0.00 0.00 2.08
1956 2282 1.662044 GTGCTTTGGTGAGCTTGGG 59.338 57.895 0.00 0.00 43.11 4.12
1973 2299 1.678970 GGGGTTCTGGTCACCATGC 60.679 63.158 0.00 0.00 35.80 4.06
1974 2300 1.678970 GGGTTCTGGTCACCATGCC 60.679 63.158 0.00 0.00 35.80 4.40
1982 4625 1.686052 TGGTCACCATGCCTTTGTTTC 59.314 47.619 0.00 0.00 0.00 2.78
1993 4636 3.569701 TGCCTTTGTTTCTTCATCCTCAC 59.430 43.478 0.00 0.00 0.00 3.51
2001 4644 5.248248 TGTTTCTTCATCCTCACTGGTGATA 59.752 40.000 3.80 0.00 39.13 2.15
2018 4661 9.456147 ACTGGTGATATACTATGACATAGTCTC 57.544 37.037 27.44 21.60 44.55 3.36
2046 4689 0.694444 TAGGAGAAGGGGATGTGGGC 60.694 60.000 0.00 0.00 0.00 5.36
2047 4690 2.308722 GGAGAAGGGGATGTGGGCA 61.309 63.158 0.00 0.00 0.00 5.36
2066 4709 2.648059 CAGGAGGGGCTGAATAACAAG 58.352 52.381 0.00 0.00 0.00 3.16
2067 4710 1.064389 AGGAGGGGCTGAATAACAAGC 60.064 52.381 0.00 0.00 0.00 4.01
2068 4711 1.393603 GAGGGGCTGAATAACAAGCC 58.606 55.000 5.10 5.10 39.93 4.35
2070 4713 2.106844 GGGCTGAATAACAAGCCCG 58.893 57.895 16.48 0.00 45.43 6.13
2071 4714 1.433471 GGCTGAATAACAAGCCCGC 59.567 57.895 2.16 0.00 37.07 6.13
2072 4715 1.433471 GCTGAATAACAAGCCCGCC 59.567 57.895 0.00 0.00 0.00 6.13
2073 4716 1.032114 GCTGAATAACAAGCCCGCCT 61.032 55.000 0.00 0.00 0.00 5.52
2074 4717 1.745827 GCTGAATAACAAGCCCGCCTA 60.746 52.381 0.00 0.00 0.00 3.93
2079 4722 1.099689 TAACAAGCCCGCCTATTTGC 58.900 50.000 0.00 0.00 0.00 3.68
2081 4724 2.828549 AAGCCCGCCTATTTGCCG 60.829 61.111 0.00 0.00 0.00 5.69
2089 4732 1.026718 GCCTATTTGCCGCTCACTGT 61.027 55.000 0.00 0.00 0.00 3.55
2090 4733 0.729116 CCTATTTGCCGCTCACTGTG 59.271 55.000 0.17 0.17 0.00 3.66
2132 4775 1.687563 ACATGGCGGTTATTTAGGCC 58.312 50.000 0.00 0.00 45.76 5.19
2140 4783 3.062042 CGGTTATTTAGGCCGGTCATAC 58.938 50.000 9.71 0.00 41.60 2.39
2152 4795 1.644786 GGTCATACACGCAGCCCAAC 61.645 60.000 0.00 0.00 0.00 3.77
2154 4797 0.035534 TCATACACGCAGCCCAACAT 60.036 50.000 0.00 0.00 0.00 2.71
2159 4802 1.675641 ACGCAGCCCAACATCCTTC 60.676 57.895 0.00 0.00 0.00 3.46
2278 4921 4.866508 TGCTTACATATTACTCCCTCCG 57.133 45.455 0.00 0.00 0.00 4.63
2279 4922 4.220724 TGCTTACATATTACTCCCTCCGT 58.779 43.478 0.00 0.00 0.00 4.69
2280 4923 4.652421 TGCTTACATATTACTCCCTCCGTT 59.348 41.667 0.00 0.00 0.00 4.44
2281 4924 5.221382 TGCTTACATATTACTCCCTCCGTTC 60.221 44.000 0.00 0.00 0.00 3.95
2282 4925 5.780984 CTTACATATTACTCCCTCCGTTCC 58.219 45.833 0.00 0.00 0.00 3.62
2283 4926 3.924922 ACATATTACTCCCTCCGTTCCT 58.075 45.455 0.00 0.00 0.00 3.36
2284 4927 5.070823 ACATATTACTCCCTCCGTTCCTA 57.929 43.478 0.00 0.00 0.00 2.94
2285 4928 5.461327 ACATATTACTCCCTCCGTTCCTAA 58.539 41.667 0.00 0.00 0.00 2.69
2286 4929 5.901276 ACATATTACTCCCTCCGTTCCTAAA 59.099 40.000 0.00 0.00 0.00 1.85
2287 4930 6.557633 ACATATTACTCCCTCCGTTCCTAAAT 59.442 38.462 0.00 0.00 0.00 1.40
2288 4931 7.731688 ACATATTACTCCCTCCGTTCCTAAATA 59.268 37.037 0.00 0.00 0.00 1.40
2289 4932 8.759782 CATATTACTCCCTCCGTTCCTAAATAT 58.240 37.037 0.00 0.00 0.00 1.28
2291 4934 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
2292 4935 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2293 4936 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2294 4937 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2295 4938 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2296 4939 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2297 4940 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2298 4941 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2299 4942 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2310 4953 9.668497 AAATATAAGTCTTTCTAGTGGTTCCAC 57.332 33.333 13.45 13.45 37.23 4.02
2312 4955 9.710818 ATATAAGTCTTTCTAGTGGTTCCACTA 57.289 33.333 24.44 24.44 44.42 2.74
2328 4971 3.984508 CACTAGGTGGACTACATACGG 57.015 52.381 0.00 0.00 0.00 4.02
2329 4972 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
2330 4973 3.564644 CACTAGGTGGACTACATACGGAG 59.435 52.174 0.00 0.00 0.00 4.63
2331 4974 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
2332 4975 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
2333 4976 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
2334 4977 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
2335 4978 3.431766 GGTGGACTACATACGGAGCAAAT 60.432 47.826 0.00 0.00 0.00 2.32
2336 4979 4.189231 GTGGACTACATACGGAGCAAATT 58.811 43.478 0.00 0.00 0.00 1.82
2337 4980 4.034048 GTGGACTACATACGGAGCAAATTG 59.966 45.833 0.00 0.00 0.00 2.32
2338 4981 4.081365 TGGACTACATACGGAGCAAATTGA 60.081 41.667 0.00 0.00 0.00 2.57
2339 4982 4.873827 GGACTACATACGGAGCAAATTGAA 59.126 41.667 0.00 0.00 0.00 2.69
2340 4983 5.527582 GGACTACATACGGAGCAAATTGAAT 59.472 40.000 0.00 0.00 0.00 2.57
2341 4984 6.363577 ACTACATACGGAGCAAATTGAATG 57.636 37.500 0.00 0.00 0.00 2.67
2342 4985 6.112734 ACTACATACGGAGCAAATTGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2343 4986 5.895636 ACATACGGAGCAAATTGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2344 4987 6.455360 ACATACGGAGCAAATTGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2345 4988 6.498304 ACATACGGAGCAAATTGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2346 4989 6.319658 ACATACGGAGCAAATTGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2347 4990 7.498900 ACATACGGAGCAAATTGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2348 4991 6.124088 ACGGAGCAAATTGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2349 4992 5.647658 ACGGAGCAAATTGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2350 4993 5.967674 CGGAGCAAATTGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 106 5.463061 ACAATTTATTATTGAAGCGCATGGC 59.537 36.000 11.47 0.00 35.96 4.40
81 107 6.696583 TGACAATTTATTATTGAAGCGCATGG 59.303 34.615 11.47 0.00 33.51 3.66
237 308 3.976169 TGCTTTTGTACATGGCAGTTTC 58.024 40.909 11.94 0.00 0.00 2.78
335 607 3.489229 CGTGAGCATCGACCTTGAATCTA 60.489 47.826 0.00 0.00 38.61 1.98
339 611 0.317160 ACGTGAGCATCGACCTTGAA 59.683 50.000 0.00 0.00 38.61 2.69
341 613 1.078759 GGACGTGAGCATCGACCTTG 61.079 60.000 0.00 0.00 39.25 3.61
342 614 1.215647 GGACGTGAGCATCGACCTT 59.784 57.895 0.00 0.00 39.25 3.50
382 669 6.784227 CGAACGCTTTACTAGTTAAAACACTG 59.216 38.462 0.00 0.00 0.00 3.66
410 697 3.810941 TGTTCGATGTGAGTACAAAACCC 59.189 43.478 0.00 0.00 40.84 4.11
426 713 7.595875 TCACGTCAGATTTATTAACTTGTTCGA 59.404 33.333 0.00 0.00 0.00 3.71
452 739 2.738213 CTTGGCGCAGGGACAGAAGT 62.738 60.000 10.83 0.00 32.99 3.01
455 742 1.841302 AATCTTGGCGCAGGGACAGA 61.841 55.000 10.83 0.48 32.99 3.41
475 762 0.456142 CTCGTCGGATTCGTTGCAGA 60.456 55.000 0.00 0.00 37.69 4.26
496 783 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
497 784 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
498 785 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
499 786 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
500 787 3.551863 CGCTCTCTCTCTCTCTCTCTCTC 60.552 56.522 0.00 0.00 0.00 3.20
501 788 2.363680 CGCTCTCTCTCTCTCTCTCTCT 59.636 54.545 0.00 0.00 0.00 3.10
502 789 2.101582 ACGCTCTCTCTCTCTCTCTCTC 59.898 54.545 0.00 0.00 0.00 3.20
503 790 2.111384 ACGCTCTCTCTCTCTCTCTCT 58.889 52.381 0.00 0.00 0.00 3.10
504 791 2.205074 CACGCTCTCTCTCTCTCTCTC 58.795 57.143 0.00 0.00 0.00 3.20
505 792 1.555075 ACACGCTCTCTCTCTCTCTCT 59.445 52.381 0.00 0.00 0.00 3.10
506 793 2.024176 ACACGCTCTCTCTCTCTCTC 57.976 55.000 0.00 0.00 0.00 3.20
507 794 2.356135 GAACACGCTCTCTCTCTCTCT 58.644 52.381 0.00 0.00 0.00 3.10
508 795 1.062002 CGAACACGCTCTCTCTCTCTC 59.938 57.143 0.00 0.00 0.00 3.20
509 796 1.083489 CGAACACGCTCTCTCTCTCT 58.917 55.000 0.00 0.00 0.00 3.10
510 797 3.596865 CGAACACGCTCTCTCTCTC 57.403 57.895 0.00 0.00 0.00 3.20
570 857 9.337396 CCTGTAGCATTTGAGTATTATTTACCA 57.663 33.333 0.00 0.00 0.00 3.25
571 858 8.784043 CCCTGTAGCATTTGAGTATTATTTACC 58.216 37.037 0.00 0.00 0.00 2.85
582 869 5.440610 AGGATAAACCCTGTAGCATTTGAG 58.559 41.667 0.00 0.00 40.05 3.02
583 870 5.450818 AGGATAAACCCTGTAGCATTTGA 57.549 39.130 0.00 0.00 40.05 2.69
585 872 7.179269 TGTAAAGGATAAACCCTGTAGCATTT 58.821 34.615 0.00 0.00 40.05 2.32
595 882 5.454520 CACACGTTTGTAAAGGATAAACCC 58.545 41.667 4.28 0.00 36.15 4.11
607 894 1.262950 GACTGCATGCACACGTTTGTA 59.737 47.619 18.46 0.00 33.30 2.41
615 902 2.270257 GGCCAAGACTGCATGCACA 61.270 57.895 18.46 0.00 0.00 4.57
670 966 4.317530 TTGCTAGTAGACCTGAGAAGGA 57.682 45.455 0.00 0.00 0.00 3.36
686 982 7.886989 GGACCTCCATGTGCATACTTTGCTA 62.887 48.000 0.00 0.00 43.28 3.49
688 984 5.038490 GGACCTCCATGTGCATACTTTGC 62.038 52.174 0.00 0.00 43.22 3.68
689 985 2.684881 GGACCTCCATGTGCATACTTTG 59.315 50.000 0.00 0.00 35.64 2.77
690 986 2.578021 AGGACCTCCATGTGCATACTTT 59.422 45.455 0.00 0.00 38.89 2.66
692 988 1.487976 CAGGACCTCCATGTGCATACT 59.512 52.381 0.00 0.00 38.89 2.12
693 989 1.486310 TCAGGACCTCCATGTGCATAC 59.514 52.381 0.00 0.00 38.89 2.39
694 990 1.878211 TCAGGACCTCCATGTGCATA 58.122 50.000 0.00 0.00 38.89 3.14
695 991 1.142465 GATCAGGACCTCCATGTGCAT 59.858 52.381 0.00 0.00 38.89 3.96
696 992 0.543277 GATCAGGACCTCCATGTGCA 59.457 55.000 0.00 0.00 38.89 4.57
697 993 0.179034 GGATCAGGACCTCCATGTGC 60.179 60.000 0.00 0.00 38.89 4.57
700 996 0.678395 CTCGGATCAGGACCTCCATG 59.322 60.000 0.00 0.00 38.89 3.66
717 1013 1.340248 TGGAATAATCGAGCGGTCCTC 59.660 52.381 9.39 0.00 37.22 3.71
872 1169 1.007387 GGAAAGGTTTGCGTGCAGG 60.007 57.895 1.01 1.01 0.00 4.85
968 1285 2.059541 GACGTTGAGGACTGTACTTGC 58.940 52.381 0.00 0.00 0.00 4.01
1265 1582 2.023771 TAGTCGTCGTCGCTGTCGT 61.024 57.895 0.00 0.00 36.96 4.34
1333 1653 0.103208 GATCAGTGGCCGAGAACGAT 59.897 55.000 0.00 0.00 42.66 3.73
1417 1738 1.076632 ACCGGCCAGTCCAACAAAA 60.077 52.632 0.00 0.00 34.01 2.44
1500 1823 7.879160 CCTACTTATACTTAACAACACCACCAA 59.121 37.037 0.00 0.00 0.00 3.67
1532 1855 4.142403 ACAGAACATATTTGCCAATCCACG 60.142 41.667 0.00 0.00 0.00 4.94
1566 1889 8.956426 GTAAGGATCACACTTTATCAAATCCAA 58.044 33.333 0.00 0.00 34.86 3.53
1612 1935 5.520748 AAGGATCACACTTTACCCAATCT 57.479 39.130 0.00 0.00 0.00 2.40
1651 1974 0.179020 GGCCACGGATCAATCCATGA 60.179 55.000 6.67 0.00 42.47 3.07
1706 2032 6.590068 TGTGGTGAATTTTGGTGATTTTCAT 58.410 32.000 0.00 0.00 0.00 2.57
1707 2033 5.982356 TGTGGTGAATTTTGGTGATTTTCA 58.018 33.333 0.00 0.00 0.00 2.69
1709 2035 7.443879 GGTATTGTGGTGAATTTTGGTGATTTT 59.556 33.333 0.00 0.00 0.00 1.82
1710 2036 6.934083 GGTATTGTGGTGAATTTTGGTGATTT 59.066 34.615 0.00 0.00 0.00 2.17
1711 2037 6.269769 AGGTATTGTGGTGAATTTTGGTGATT 59.730 34.615 0.00 0.00 0.00 2.57
1712 2038 5.779771 AGGTATTGTGGTGAATTTTGGTGAT 59.220 36.000 0.00 0.00 0.00 3.06
1713 2039 5.144100 AGGTATTGTGGTGAATTTTGGTGA 58.856 37.500 0.00 0.00 0.00 4.02
1714 2040 5.467035 AGGTATTGTGGTGAATTTTGGTG 57.533 39.130 0.00 0.00 0.00 4.17
1715 2041 5.838521 AGAAGGTATTGTGGTGAATTTTGGT 59.161 36.000 0.00 0.00 0.00 3.67
1716 2042 6.158598 CAGAAGGTATTGTGGTGAATTTTGG 58.841 40.000 0.00 0.00 0.00 3.28
1717 2043 5.634859 GCAGAAGGTATTGTGGTGAATTTTG 59.365 40.000 0.00 0.00 30.50 2.44
1718 2044 5.279456 GGCAGAAGGTATTGTGGTGAATTTT 60.279 40.000 0.00 0.00 30.50 1.82
1722 2048 2.107378 TGGCAGAAGGTATTGTGGTGAA 59.893 45.455 0.00 0.00 30.50 3.18
1727 2053 5.957842 TTACTTTGGCAGAAGGTATTGTG 57.042 39.130 12.03 0.00 32.93 3.33
1729 2055 6.156519 GGTTTTACTTTGGCAGAAGGTATTG 58.843 40.000 12.03 0.00 0.00 1.90
1735 2061 4.338118 TCAGTGGTTTTACTTTGGCAGAAG 59.662 41.667 7.56 7.56 0.00 2.85
1738 2064 4.338118 TCTTCAGTGGTTTTACTTTGGCAG 59.662 41.667 0.00 0.00 0.00 4.85
1764 2090 3.465871 TCGGTGGCTTTACGTACTTTTT 58.534 40.909 0.00 0.00 0.00 1.94
1765 2091 3.110447 TCGGTGGCTTTACGTACTTTT 57.890 42.857 0.00 0.00 0.00 2.27
1766 2092 2.802247 GTTCGGTGGCTTTACGTACTTT 59.198 45.455 0.00 0.00 0.00 2.66
1768 2094 1.337167 GGTTCGGTGGCTTTACGTACT 60.337 52.381 0.00 0.00 0.00 2.73
1769 2095 1.070821 GGTTCGGTGGCTTTACGTAC 58.929 55.000 0.00 0.00 0.00 3.67
1770 2096 0.678395 TGGTTCGGTGGCTTTACGTA 59.322 50.000 0.00 0.00 0.00 3.57
1771 2097 0.035739 ATGGTTCGGTGGCTTTACGT 59.964 50.000 0.00 0.00 0.00 3.57
1772 2098 0.446222 CATGGTTCGGTGGCTTTACG 59.554 55.000 0.00 0.00 0.00 3.18
1773 2099 1.530323 ACATGGTTCGGTGGCTTTAC 58.470 50.000 0.00 0.00 0.00 2.01
1774 2100 3.637911 ATACATGGTTCGGTGGCTTTA 57.362 42.857 0.00 0.00 0.00 1.85
1775 2101 2.507407 ATACATGGTTCGGTGGCTTT 57.493 45.000 0.00 0.00 0.00 3.51
1776 2102 2.507407 AATACATGGTTCGGTGGCTT 57.493 45.000 0.00 0.00 0.00 4.35
1777 2103 2.507407 AAATACATGGTTCGGTGGCT 57.493 45.000 0.00 0.00 0.00 4.75
1778 2104 3.586100 AAAAATACATGGTTCGGTGGC 57.414 42.857 0.00 0.00 0.00 5.01
1797 2123 8.293867 CACTTCATCGGTATTTAAGGTGAAAAA 58.706 33.333 0.00 0.00 0.00 1.94
1801 2127 4.873827 GCACTTCATCGGTATTTAAGGTGA 59.126 41.667 0.00 0.00 0.00 4.02
1811 2137 4.637276 TCAAAAAGAGCACTTCATCGGTA 58.363 39.130 0.00 0.00 35.05 4.02
1830 2156 2.954316 ACGCGTGTCAGAATGTATCAA 58.046 42.857 12.93 0.00 37.40 2.57
1831 2157 2.647529 ACGCGTGTCAGAATGTATCA 57.352 45.000 12.93 0.00 37.40 2.15
1832 2158 2.468040 GCTACGCGTGTCAGAATGTATC 59.532 50.000 24.59 0.00 37.40 2.24
1834 2160 1.471287 AGCTACGCGTGTCAGAATGTA 59.529 47.619 24.59 0.00 37.40 2.29
1836 2162 0.642291 CAGCTACGCGTGTCAGAATG 59.358 55.000 24.59 10.09 37.54 2.67
1837 2163 0.526211 TCAGCTACGCGTGTCAGAAT 59.474 50.000 24.59 0.68 0.00 2.40
1885 2211 2.037251 ACCAAGTCAGTATGCTCGTGTT 59.963 45.455 0.00 0.00 34.76 3.32
1889 2215 2.654749 TGACCAAGTCAGTATGCTCG 57.345 50.000 0.00 0.00 37.67 5.03
1894 2220 5.251700 AGGAGGAAATTGACCAAGTCAGTAT 59.748 40.000 0.00 0.00 43.69 2.12
1897 2223 3.755378 CAGGAGGAAATTGACCAAGTCAG 59.245 47.826 0.00 0.00 43.69 3.51
1919 2245 3.119990 GCACCGATAGATCACTAGAGAGC 60.120 52.174 0.00 0.00 39.76 4.09
1922 2248 5.218885 CAAAGCACCGATAGATCACTAGAG 58.781 45.833 0.00 0.00 39.76 2.43
1936 2262 1.283793 CAAGCTCACCAAAGCACCG 59.716 57.895 0.00 0.00 45.00 4.94
1956 2282 1.678970 GGCATGGTGACCAGAACCC 60.679 63.158 11.23 3.68 36.75 4.11
1973 2299 4.217118 CCAGTGAGGATGAAGAAACAAAGG 59.783 45.833 0.00 0.00 41.22 3.11
1974 2300 4.823989 ACCAGTGAGGATGAAGAAACAAAG 59.176 41.667 0.00 0.00 41.22 2.77
1982 4625 6.662865 AGTATATCACCAGTGAGGATGAAG 57.337 41.667 6.63 0.00 43.61 3.02
1993 4636 8.608317 CGAGACTATGTCATAGTATATCACCAG 58.392 40.741 22.68 7.60 45.64 4.00
2001 4644 6.375830 TCCTCCGAGACTATGTCATAGTAT 57.624 41.667 22.68 20.32 45.64 2.12
2018 4661 0.468400 CCCTTCTCCTACCTCCTCCG 60.468 65.000 0.00 0.00 0.00 4.63
2046 4689 2.648059 CTTGTTATTCAGCCCCTCCTG 58.352 52.381 0.00 0.00 0.00 3.86
2047 4690 1.064389 GCTTGTTATTCAGCCCCTCCT 60.064 52.381 0.00 0.00 0.00 3.69
2070 4713 1.026718 ACAGTGAGCGGCAAATAGGC 61.027 55.000 1.45 0.00 39.93 3.93
2071 4714 0.729116 CACAGTGAGCGGCAAATAGG 59.271 55.000 1.45 0.00 0.00 2.57
2072 4715 0.097674 GCACAGTGAGCGGCAAATAG 59.902 55.000 4.15 0.00 0.00 1.73
2073 4716 2.170738 GCACAGTGAGCGGCAAATA 58.829 52.632 4.15 0.00 0.00 1.40
2074 4717 2.956987 GCACAGTGAGCGGCAAAT 59.043 55.556 4.15 0.00 0.00 2.32
2081 4724 1.895280 GACAGCTTCGCACAGTGAGC 61.895 60.000 4.15 4.56 0.00 4.26
2089 4732 3.865164 CACTATATGTTGACAGCTTCGCA 59.135 43.478 0.00 0.00 0.00 5.10
2090 4733 3.865745 ACACTATATGTTGACAGCTTCGC 59.134 43.478 0.00 0.00 38.98 4.70
2101 4744 4.682778 ACCGCCATGTACACTATATGTT 57.317 40.909 0.00 0.00 43.19 2.71
2107 4750 5.603596 CCTAAATAACCGCCATGTACACTA 58.396 41.667 0.00 0.00 0.00 2.74
2108 4751 4.448210 CCTAAATAACCGCCATGTACACT 58.552 43.478 0.00 0.00 0.00 3.55
2109 4752 3.002965 GCCTAAATAACCGCCATGTACAC 59.997 47.826 0.00 0.00 0.00 2.90
2132 4775 2.890474 GGGCTGCGTGTATGACCG 60.890 66.667 0.00 0.00 0.00 4.79
2133 4776 1.376683 TTGGGCTGCGTGTATGACC 60.377 57.895 0.00 0.00 0.00 4.02
2140 4783 1.926511 GAAGGATGTTGGGCTGCGTG 61.927 60.000 0.00 0.00 0.00 5.34
2254 4897 6.668283 ACGGAGGGAGTAATATGTAAGCATAT 59.332 38.462 0.00 0.00 46.92 1.78
2255 4898 6.014647 ACGGAGGGAGTAATATGTAAGCATA 58.985 40.000 0.00 0.00 41.31 3.14
2256 4899 4.838986 ACGGAGGGAGTAATATGTAAGCAT 59.161 41.667 0.00 0.00 39.03 3.79
2257 4900 4.220724 ACGGAGGGAGTAATATGTAAGCA 58.779 43.478 0.00 0.00 0.00 3.91
2258 4901 4.868314 ACGGAGGGAGTAATATGTAAGC 57.132 45.455 0.00 0.00 0.00 3.09
2259 4902 5.539193 AGGAACGGAGGGAGTAATATGTAAG 59.461 44.000 0.00 0.00 0.00 2.34
2260 4903 5.461327 AGGAACGGAGGGAGTAATATGTAA 58.539 41.667 0.00 0.00 0.00 2.41
2261 4904 5.070823 AGGAACGGAGGGAGTAATATGTA 57.929 43.478 0.00 0.00 0.00 2.29
2262 4905 3.924922 AGGAACGGAGGGAGTAATATGT 58.075 45.455 0.00 0.00 0.00 2.29
2263 4906 6.415206 TTTAGGAACGGAGGGAGTAATATG 57.585 41.667 0.00 0.00 0.00 1.78
2264 4907 8.912614 ATATTTAGGAACGGAGGGAGTAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2265 4908 9.827198 TTATATTTAGGAACGGAGGGAGTAATA 57.173 33.333 0.00 0.00 0.00 0.98
2266 4909 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
2267 4910 7.786464 ACTTATATTTAGGAACGGAGGGAGTAA 59.214 37.037 0.00 0.00 0.00 2.24
2268 4911 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2269 4912 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2270 4913 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2271 4914 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2272 4915 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2273 4916 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2284 4927 9.668497 GTGGAACCACTAGAAAGACTTATATTT 57.332 33.333 15.69 0.00 43.12 1.40
2308 4951 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
2309 4952 3.818180 CTCCGTATGTAGTCCACCTAGT 58.182 50.000 0.00 0.00 0.00 2.57
2310 4953 2.553172 GCTCCGTATGTAGTCCACCTAG 59.447 54.545 0.00 0.00 0.00 3.02
2311 4954 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
2312 4955 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
2313 4956 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
2314 4957 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
2315 4958 4.081365 TCAATTTGCTCCGTATGTAGTCCA 60.081 41.667 0.00 0.00 0.00 4.02
2316 4959 4.439057 TCAATTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
2317 4960 6.257849 TCATTCAATTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
2318 4961 6.112734 TCATTCAATTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
2319 4962 6.603237 TCATTCAATTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
2320 4963 6.993786 TTCATTCAATTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2321 4964 5.895636 TTCATTCAATTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2322 4965 6.732154 AGATTCATTCAATTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2323 4966 6.949352 AGATTCATTCAATTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2324 4967 6.821160 TGTAGATTCATTCAATTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2325 4968 5.647658 TGTAGATTCATTCAATTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2326 4969 5.967674 GTGTAGATTCATTCAATTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.