Multiple sequence alignment - TraesCS7D01G383500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G383500 chr7D 100.000 3533 0 0 1 3533 497321718 497318186 0.000000e+00 6525.0
1 TraesCS7D01G383500 chr7D 92.606 284 21 0 189 472 561805738 561806021 3.280000e-110 409.0
2 TraesCS7D01G383500 chr7D 92.364 275 20 1 189 462 329100280 329100554 1.190000e-104 390.0
3 TraesCS7D01G383500 chr7D 80.333 300 47 7 2483 2770 497345976 497345677 2.140000e-52 217.0
4 TraesCS7D01G383500 chr7D 91.156 147 12 1 1 147 34300839 34300984 7.740000e-47 198.0
5 TraesCS7D01G383500 chr7D 89.262 149 14 2 1 148 620118045 620117898 6.020000e-43 185.0
6 TraesCS7D01G383500 chr7A 94.785 2301 81 18 503 2770 563247324 563245030 0.000000e+00 3548.0
7 TraesCS7D01G383500 chr7A 88.518 2099 200 24 709 2770 563293676 563291582 0.000000e+00 2503.0
8 TraesCS7D01G383500 chr7A 89.356 1785 182 8 989 2768 29009262 29007481 0.000000e+00 2237.0
9 TraesCS7D01G383500 chr7A 92.800 375 19 4 3157 3531 563244939 563244573 1.440000e-148 536.0
10 TraesCS7D01G383500 chr7B 90.999 2222 131 25 584 2770 525598897 525596710 0.000000e+00 2931.0
11 TraesCS7D01G383500 chr7B 94.960 377 19 0 3157 3533 525596619 525596243 3.040000e-165 592.0
12 TraesCS7D01G383500 chr7B 87.619 105 11 2 483 587 525599125 525599023 1.720000e-23 121.0
13 TraesCS7D01G383500 chr7B 96.078 51 2 0 3105 3155 245218636 245218586 2.260000e-12 84.2
14 TraesCS7D01G383500 chr7B 97.826 46 1 0 147 192 525599224 525599179 2.920000e-11 80.5
15 TraesCS7D01G383500 chr1D 86.940 2052 224 22 716 2750 33595477 33597501 0.000000e+00 2265.0
16 TraesCS7D01G383500 chr4A 89.418 1786 179 6 989 2769 702327815 702326035 0.000000e+00 2242.0
17 TraesCS7D01G383500 chr4A 92.996 257 18 0 2774 3030 599341211 599341467 3.330000e-100 375.0
18 TraesCS7D01G383500 chr1A 86.693 2044 228 23 722 2750 32110888 32112902 0.000000e+00 2228.0
19 TraesCS7D01G383500 chr2B 89.436 1666 164 7 1000 2662 742172744 742171088 0.000000e+00 2091.0
20 TraesCS7D01G383500 chr2B 92.395 263 19 1 2769 3030 198740070 198740332 1.200000e-99 374.0
21 TraesCS7D01G383500 chr2B 89.189 148 16 0 1 148 421092152 421092299 6.020000e-43 185.0
22 TraesCS7D01G383500 chr2A 89.152 1687 170 8 988 2661 740143052 740141366 0.000000e+00 2089.0
23 TraesCS7D01G383500 chr2A 97.727 44 1 0 3112 3155 384230397 384230354 3.780000e-10 76.8
24 TraesCS7D01G383500 chr2A 93.182 44 3 0 3048 3091 740077198 740077155 8.190000e-07 65.8
25 TraesCS7D01G383500 chr3A 93.525 278 17 1 189 465 486930489 486930766 2.540000e-111 412.0
26 TraesCS7D01G383500 chr3A 92.720 261 19 0 2769 3029 657874602 657874862 9.260000e-101 377.0
27 TraesCS7D01G383500 chr3A 94.231 52 3 0 3105 3156 711217330 711217381 2.920000e-11 80.5
28 TraesCS7D01G383500 chr3D 92.674 273 19 1 191 462 43721802 43721530 3.310000e-105 392.0
29 TraesCS7D01G383500 chr3D 93.846 260 15 1 189 447 43564192 43563933 1.190000e-104 390.0
30 TraesCS7D01G383500 chr3D 93.846 260 15 1 2774 3033 441025874 441025616 1.190000e-104 390.0
31 TraesCS7D01G383500 chr4D 92.884 267 19 0 196 462 385521426 385521160 4.280000e-104 388.0
32 TraesCS7D01G383500 chr4D 90.345 145 13 1 1 145 489780534 489780677 4.660000e-44 189.0
33 TraesCS7D01G383500 chr5A 92.830 265 18 1 2768 3031 419685933 419686197 1.990000e-102 383.0
34 TraesCS7D01G383500 chr5D 92.803 264 18 1 2766 3029 529825623 529825361 7.160000e-102 381.0
35 TraesCS7D01G383500 chr5D 91.606 274 21 1 189 462 62530171 62529900 9.260000e-101 377.0
36 TraesCS7D01G383500 chr5D 91.418 268 23 0 2766 3033 450172637 450172904 5.570000e-98 368.0
37 TraesCS7D01G383500 chr5D 89.189 148 16 0 1 148 216062887 216063034 6.020000e-43 185.0
38 TraesCS7D01G383500 chr5D 92.308 52 4 0 3105 3156 51113259 51113310 1.360000e-09 75.0
39 TraesCS7D01G383500 chr5D 92.308 52 4 0 3105 3156 51130711 51130762 1.360000e-09 75.0
40 TraesCS7D01G383500 chr5D 92.308 52 4 0 3105 3156 51150946 51150997 1.360000e-09 75.0
41 TraesCS7D01G383500 chr5D 92.308 52 4 0 3105 3156 51170553 51170604 1.360000e-09 75.0
42 TraesCS7D01G383500 chr3B 91.429 280 18 5 189 466 775734587 775734312 2.570000e-101 379.0
43 TraesCS7D01G383500 chr3B 92.593 54 4 0 3105 3158 771996880 771996827 1.050000e-10 78.7
44 TraesCS7D01G383500 chr6D 91.575 273 23 0 189 461 144144451 144144179 9.260000e-101 377.0
45 TraesCS7D01G383500 chr5B 92.748 262 18 1 2769 3029 659094161 659093900 9.260000e-101 377.0
46 TraesCS7D01G383500 chr5B 90.278 144 13 1 1 144 360936457 360936599 1.670000e-43 187.0
47 TraesCS7D01G383500 chr2D 90.141 284 23 5 2752 3032 622498425 622498144 7.210000e-97 364.0
48 TraesCS7D01G383500 chr6B 90.909 143 12 1 1 143 140097890 140098031 1.290000e-44 191.0
49 TraesCS7D01G383500 chr6B 89.726 146 13 1 1 146 561645216 561645359 6.020000e-43 185.0
50 TraesCS7D01G383500 chr1B 89.189 148 14 1 1 148 1847478 1847333 2.170000e-42 183.0
51 TraesCS7D01G383500 chr4B 96.078 51 2 0 3105 3155 600659544 600659494 2.260000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G383500 chr7D 497318186 497321718 3532 True 6525.000 6525 100.0000 1 3533 1 chr7D.!!$R1 3532
1 TraesCS7D01G383500 chr7A 563291582 563293676 2094 True 2503.000 2503 88.5180 709 2770 1 chr7A.!!$R2 2061
2 TraesCS7D01G383500 chr7A 29007481 29009262 1781 True 2237.000 2237 89.3560 989 2768 1 chr7A.!!$R1 1779
3 TraesCS7D01G383500 chr7A 563244573 563247324 2751 True 2042.000 3548 93.7925 503 3531 2 chr7A.!!$R3 3028
4 TraesCS7D01G383500 chr7B 525596243 525599224 2981 True 931.125 2931 92.8510 147 3533 4 chr7B.!!$R2 3386
5 TraesCS7D01G383500 chr1D 33595477 33597501 2024 False 2265.000 2265 86.9400 716 2750 1 chr1D.!!$F1 2034
6 TraesCS7D01G383500 chr4A 702326035 702327815 1780 True 2242.000 2242 89.4180 989 2769 1 chr4A.!!$R1 1780
7 TraesCS7D01G383500 chr1A 32110888 32112902 2014 False 2228.000 2228 86.6930 722 2750 1 chr1A.!!$F1 2028
8 TraesCS7D01G383500 chr2B 742171088 742172744 1656 True 2091.000 2091 89.4360 1000 2662 1 chr2B.!!$R1 1662
9 TraesCS7D01G383500 chr2A 740141366 740143052 1686 True 2089.000 2089 89.1520 988 2661 1 chr2A.!!$R3 1673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.035630 AGTAGTCGTCGCTAGGTGGT 60.036 55.0 0.00 0.0 0.0 4.16 F
372 373 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.0 0.00 0.0 0.0 3.85 F
373 374 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.0 0.00 0.0 0.0 2.59 F
1104 1350 0.320858 TTCGCGCATACCTCCACAAA 60.321 50.0 8.75 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1455 1701 0.687920 TGCGGTTCATGAAGGTGGTA 59.312 50.000 8.80 0.0 0.00 3.25 R
1968 2214 0.892755 ATTTGTGTGGGCTCATGCTG 59.107 50.000 0.00 0.0 39.59 4.41 R
2350 2596 2.268076 GCACACGGTTGGCCTCATT 61.268 57.895 3.32 0.0 0.00 2.57 R
3017 3287 2.093973 CAGTCGCAAATACTCCCTCTGT 60.094 50.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.752339 GGCGTCGACCCGTTACCT 61.752 66.667 10.58 0.00 0.00 3.08
18 19 2.505557 GCGTCGACCCGTTACCTG 60.506 66.667 10.58 0.00 0.00 4.00
19 20 2.180017 CGTCGACCCGTTACCTGG 59.820 66.667 10.58 0.00 0.00 4.45
25 26 3.717294 CCCGTTACCTGGGCAGCT 61.717 66.667 0.00 0.00 40.47 4.24
26 27 2.436646 CCGTTACCTGGGCAGCTG 60.437 66.667 10.11 10.11 0.00 4.24
27 28 2.436646 CGTTACCTGGGCAGCTGG 60.437 66.667 17.12 0.00 0.00 4.85
28 29 2.044946 GTTACCTGGGCAGCTGGG 60.045 66.667 17.12 10.61 0.00 4.45
29 30 3.338250 TTACCTGGGCAGCTGGGG 61.338 66.667 17.12 0.00 0.00 4.96
30 31 4.675303 TACCTGGGCAGCTGGGGT 62.675 66.667 17.12 8.34 0.00 4.95
39 40 4.223125 AGCTGGGGTTGCTGCCAA 62.223 61.111 0.00 0.00 39.56 4.52
46 47 3.615709 GTTGCTGCCAACCCACCC 61.616 66.667 0.00 0.00 44.37 4.61
50 51 3.953775 CTGCCAACCCACCCGAGT 61.954 66.667 0.00 0.00 0.00 4.18
51 52 3.491598 CTGCCAACCCACCCGAGTT 62.492 63.158 0.00 0.00 0.00 3.01
52 53 2.671963 GCCAACCCACCCGAGTTC 60.672 66.667 0.00 0.00 0.00 3.01
53 54 2.358247 CCAACCCACCCGAGTTCG 60.358 66.667 0.00 0.00 39.44 3.95
54 55 2.738480 CAACCCACCCGAGTTCGA 59.262 61.111 2.59 0.00 43.02 3.71
55 56 1.374252 CAACCCACCCGAGTTCGAG 60.374 63.158 2.59 0.00 43.02 4.04
56 57 1.835712 AACCCACCCGAGTTCGAGT 60.836 57.895 2.59 0.00 43.02 4.18
57 58 1.813728 AACCCACCCGAGTTCGAGTC 61.814 60.000 2.59 0.00 43.02 3.36
58 59 1.977544 CCCACCCGAGTTCGAGTCT 60.978 63.158 2.59 0.00 43.02 3.24
59 60 1.507174 CCACCCGAGTTCGAGTCTC 59.493 63.158 2.59 8.89 43.02 3.36
70 71 3.126225 GAGTCTCGGCTCGGACGT 61.126 66.667 0.00 0.00 37.52 4.34
71 72 3.384014 GAGTCTCGGCTCGGACGTG 62.384 68.421 0.00 0.00 37.52 4.49
72 73 3.735029 GTCTCGGCTCGGACGTGT 61.735 66.667 0.00 0.00 34.61 4.49
73 74 3.733960 TCTCGGCTCGGACGTGTG 61.734 66.667 0.00 0.00 34.61 3.82
74 75 3.733960 CTCGGCTCGGACGTGTGA 61.734 66.667 0.00 0.00 34.61 3.58
75 76 3.052620 CTCGGCTCGGACGTGTGAT 62.053 63.158 0.00 0.00 34.61 3.06
76 77 2.880879 CGGCTCGGACGTGTGATG 60.881 66.667 0.00 0.00 0.00 3.07
77 78 3.188786 GGCTCGGACGTGTGATGC 61.189 66.667 0.00 0.00 0.00 3.91
78 79 2.125912 GCTCGGACGTGTGATGCT 60.126 61.111 0.00 0.00 0.00 3.79
79 80 2.161486 GCTCGGACGTGTGATGCTC 61.161 63.158 0.00 0.00 0.00 4.26
80 81 1.869574 CTCGGACGTGTGATGCTCG 60.870 63.158 0.00 0.00 39.66 5.03
81 82 3.545481 CGGACGTGTGATGCTCGC 61.545 66.667 0.00 0.00 37.58 5.03
82 83 2.432456 GGACGTGTGATGCTCGCA 60.432 61.111 0.00 0.00 37.58 5.10
83 84 2.447887 GGACGTGTGATGCTCGCAG 61.448 63.158 0.00 0.00 37.59 5.18
84 85 1.444383 GACGTGTGATGCTCGCAGA 60.444 57.895 0.00 0.00 37.59 4.26
118 119 3.934457 AAAAATGCCAACGAGGGTTAG 57.066 42.857 0.00 0.00 38.09 2.34
119 120 1.173913 AAATGCCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 40.57 3.09
120 121 0.679960 AATGCCAACGAGGGTTAGCC 60.680 55.000 0.00 0.00 39.61 3.93
130 131 4.434483 GGTTAGCCCTTGGGTTGG 57.566 61.111 7.61 0.00 34.28 3.77
131 132 1.463375 GGTTAGCCCTTGGGTTGGT 59.537 57.895 7.61 0.00 34.28 3.67
132 133 0.611062 GGTTAGCCCTTGGGTTGGTC 60.611 60.000 7.61 0.00 34.28 4.02
133 134 0.404426 GTTAGCCCTTGGGTTGGTCT 59.596 55.000 7.61 0.00 34.28 3.85
134 135 1.631898 GTTAGCCCTTGGGTTGGTCTA 59.368 52.381 7.61 0.00 34.28 2.59
135 136 2.040679 GTTAGCCCTTGGGTTGGTCTAA 59.959 50.000 7.61 3.52 34.28 2.10
136 137 0.404426 AGCCCTTGGGTTGGTCTAAC 59.596 55.000 7.61 0.00 38.60 2.34
137 138 0.404426 GCCCTTGGGTTGGTCTAACT 59.596 55.000 7.61 0.00 39.31 2.24
138 139 1.203013 GCCCTTGGGTTGGTCTAACTT 60.203 52.381 7.61 0.00 39.31 2.66
139 140 2.755208 GCCCTTGGGTTGGTCTAACTTT 60.755 50.000 7.61 0.00 39.31 2.66
140 141 3.572642 CCCTTGGGTTGGTCTAACTTTT 58.427 45.455 0.00 0.00 39.31 2.27
141 142 3.964688 CCCTTGGGTTGGTCTAACTTTTT 59.035 43.478 0.00 0.00 39.31 1.94
186 187 6.314784 AGCATTTTCGCTGTAACAAACTATC 58.685 36.000 0.00 0.00 41.85 2.08
187 188 5.511729 GCATTTTCGCTGTAACAAACTATCC 59.488 40.000 0.00 0.00 0.00 2.59
188 189 5.616488 TTTTCGCTGTAACAAACTATCCC 57.384 39.130 0.00 0.00 0.00 3.85
189 190 4.546829 TTCGCTGTAACAAACTATCCCT 57.453 40.909 0.00 0.00 0.00 4.20
190 191 3.857052 TCGCTGTAACAAACTATCCCTG 58.143 45.455 0.00 0.00 0.00 4.45
191 192 3.512329 TCGCTGTAACAAACTATCCCTGA 59.488 43.478 0.00 0.00 0.00 3.86
192 193 4.161565 TCGCTGTAACAAACTATCCCTGAT 59.838 41.667 0.00 0.00 0.00 2.90
193 194 4.508124 CGCTGTAACAAACTATCCCTGATC 59.492 45.833 0.00 0.00 0.00 2.92
194 195 5.675538 GCTGTAACAAACTATCCCTGATCT 58.324 41.667 0.00 0.00 0.00 2.75
195 196 6.461092 CGCTGTAACAAACTATCCCTGATCTA 60.461 42.308 0.00 0.00 0.00 1.98
196 197 6.702282 GCTGTAACAAACTATCCCTGATCTAC 59.298 42.308 0.00 0.00 0.00 2.59
197 198 6.802608 TGTAACAAACTATCCCTGATCTACG 58.197 40.000 0.00 0.00 0.00 3.51
198 199 4.323553 ACAAACTATCCCTGATCTACGC 57.676 45.455 0.00 0.00 0.00 4.42
199 200 3.961408 ACAAACTATCCCTGATCTACGCT 59.039 43.478 0.00 0.00 0.00 5.07
200 201 4.406003 ACAAACTATCCCTGATCTACGCTT 59.594 41.667 0.00 0.00 0.00 4.68
201 202 4.857509 AACTATCCCTGATCTACGCTTC 57.142 45.455 0.00 0.00 0.00 3.86
202 203 4.107127 ACTATCCCTGATCTACGCTTCT 57.893 45.455 0.00 0.00 0.00 2.85
203 204 4.076394 ACTATCCCTGATCTACGCTTCTC 58.924 47.826 0.00 0.00 0.00 2.87
204 205 2.738587 TCCCTGATCTACGCTTCTCT 57.261 50.000 0.00 0.00 0.00 3.10
205 206 2.577700 TCCCTGATCTACGCTTCTCTC 58.422 52.381 0.00 0.00 0.00 3.20
206 207 1.611491 CCCTGATCTACGCTTCTCTCC 59.389 57.143 0.00 0.00 0.00 3.71
207 208 2.302260 CCTGATCTACGCTTCTCTCCA 58.698 52.381 0.00 0.00 0.00 3.86
208 209 2.890311 CCTGATCTACGCTTCTCTCCAT 59.110 50.000 0.00 0.00 0.00 3.41
209 210 3.057596 CCTGATCTACGCTTCTCTCCATC 60.058 52.174 0.00 0.00 0.00 3.51
210 211 2.550180 TGATCTACGCTTCTCTCCATCG 59.450 50.000 0.00 0.00 0.00 3.84
211 212 1.309950 TCTACGCTTCTCTCCATCGG 58.690 55.000 0.00 0.00 0.00 4.18
212 213 0.318275 CTACGCTTCTCTCCATCGGC 60.318 60.000 0.00 0.00 0.00 5.54
213 214 2.060004 TACGCTTCTCTCCATCGGCG 62.060 60.000 0.00 0.00 46.47 6.46
214 215 2.279784 GCTTCTCTCCATCGGCGG 60.280 66.667 7.21 0.00 0.00 6.13
215 216 2.279784 CTTCTCTCCATCGGCGGC 60.280 66.667 7.21 0.00 0.00 6.53
216 217 4.207281 TTCTCTCCATCGGCGGCG 62.207 66.667 27.15 27.15 0.00 6.46
229 230 3.197790 CGGCGGATGCTGTTCTGG 61.198 66.667 0.00 0.00 42.79 3.86
230 231 2.045926 GGCGGATGCTGTTCTGGT 60.046 61.111 0.00 0.00 42.25 4.00
231 232 2.401766 GGCGGATGCTGTTCTGGTG 61.402 63.158 0.00 0.00 42.25 4.17
232 233 3.044059 GCGGATGCTGTTCTGGTGC 62.044 63.158 0.00 0.00 38.39 5.01
233 234 2.743752 CGGATGCTGTTCTGGTGCG 61.744 63.158 0.00 0.00 0.00 5.34
234 235 2.482374 GATGCTGTTCTGGTGCGC 59.518 61.111 0.00 0.00 0.00 6.09
235 236 2.033141 ATGCTGTTCTGGTGCGCT 59.967 55.556 9.73 0.00 0.00 5.92
236 237 2.249557 GATGCTGTTCTGGTGCGCTG 62.250 60.000 9.73 0.00 0.00 5.18
237 238 3.730761 GCTGTTCTGGTGCGCTGG 61.731 66.667 9.73 0.00 0.00 4.85
238 239 2.281070 CTGTTCTGGTGCGCTGGT 60.281 61.111 9.73 0.00 0.00 4.00
239 240 2.280797 TGTTCTGGTGCGCTGGTC 60.281 61.111 9.73 0.00 0.00 4.02
240 241 3.050275 GTTCTGGTGCGCTGGTCC 61.050 66.667 9.73 6.75 0.00 4.46
241 242 3.241530 TTCTGGTGCGCTGGTCCT 61.242 61.111 9.73 0.00 0.00 3.85
242 243 1.911269 TTCTGGTGCGCTGGTCCTA 60.911 57.895 9.73 0.00 0.00 2.94
243 244 1.264749 TTCTGGTGCGCTGGTCCTAT 61.265 55.000 9.73 0.00 0.00 2.57
244 245 1.522355 CTGGTGCGCTGGTCCTATG 60.522 63.158 9.73 0.00 0.00 2.23
245 246 2.203070 GGTGCGCTGGTCCTATGG 60.203 66.667 9.73 0.00 0.00 2.74
246 247 2.203070 GTGCGCTGGTCCTATGGG 60.203 66.667 9.73 0.00 0.00 4.00
247 248 3.479203 TGCGCTGGTCCTATGGGG 61.479 66.667 9.73 0.00 0.00 4.96
248 249 4.937431 GCGCTGGTCCTATGGGGC 62.937 72.222 0.00 0.00 36.26 5.80
255 256 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
256 257 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
257 258 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
258 259 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
259 260 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
260 261 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
261 262 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
262 263 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
263 264 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
264 265 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
265 266 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
266 267 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
267 268 0.458025 CCTTAGCACGACGACTTCCC 60.458 60.000 0.00 0.00 0.00 3.97
268 269 0.797249 CTTAGCACGACGACTTCCCG 60.797 60.000 0.00 0.00 0.00 5.14
269 270 1.236616 TTAGCACGACGACTTCCCGA 61.237 55.000 0.00 0.00 0.00 5.14
270 271 1.915614 TAGCACGACGACTTCCCGAC 61.916 60.000 0.00 0.00 0.00 4.79
271 272 2.952245 CACGACGACTTCCCGACT 59.048 61.111 0.00 0.00 0.00 4.18
272 273 1.442184 CACGACGACTTCCCGACTG 60.442 63.158 0.00 0.00 0.00 3.51
273 274 1.895707 ACGACGACTTCCCGACTGT 60.896 57.895 0.00 0.00 0.00 3.55
274 275 1.154263 CGACGACTTCCCGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
275 276 1.575576 CGACGACTTCCCGACTGTCT 61.576 60.000 6.21 0.00 0.00 3.41
276 277 1.446907 GACGACTTCCCGACTGTCTA 58.553 55.000 6.21 0.00 0.00 2.59
277 278 1.130186 GACGACTTCCCGACTGTCTAC 59.870 57.143 6.21 0.00 0.00 2.59
278 279 1.271271 ACGACTTCCCGACTGTCTACT 60.271 52.381 6.21 0.00 0.00 2.57
279 280 2.027745 ACGACTTCCCGACTGTCTACTA 60.028 50.000 6.21 0.00 0.00 1.82
280 281 2.351111 CGACTTCCCGACTGTCTACTAC 59.649 54.545 6.21 0.00 0.00 2.73
281 282 3.341823 GACTTCCCGACTGTCTACTACA 58.658 50.000 6.21 0.00 36.42 2.74
282 283 3.755378 GACTTCCCGACTGTCTACTACAA 59.245 47.826 6.21 0.00 37.74 2.41
283 284 3.505293 ACTTCCCGACTGTCTACTACAAC 59.495 47.826 6.21 0.00 37.74 3.32
284 285 3.144657 TCCCGACTGTCTACTACAACA 57.855 47.619 6.21 0.00 37.74 3.33
285 286 3.489355 TCCCGACTGTCTACTACAACAA 58.511 45.455 6.21 0.00 37.74 2.83
286 287 3.504906 TCCCGACTGTCTACTACAACAAG 59.495 47.826 6.21 0.00 37.74 3.16
287 288 3.367087 CCCGACTGTCTACTACAACAAGG 60.367 52.174 6.21 0.00 37.74 3.61
288 289 3.255149 CCGACTGTCTACTACAACAAGGT 59.745 47.826 6.21 0.00 37.74 3.50
289 290 4.261909 CCGACTGTCTACTACAACAAGGTT 60.262 45.833 6.21 0.00 37.74 3.50
290 291 5.287226 CGACTGTCTACTACAACAAGGTTT 58.713 41.667 6.21 0.00 37.74 3.27
291 292 5.175126 CGACTGTCTACTACAACAAGGTTTG 59.825 44.000 6.21 0.00 37.74 2.93
292 293 4.814771 ACTGTCTACTACAACAAGGTTTGC 59.185 41.667 0.00 0.00 37.74 3.68
293 294 5.031066 TGTCTACTACAACAAGGTTTGCT 57.969 39.130 0.00 0.00 34.29 3.91
294 295 5.433526 TGTCTACTACAACAAGGTTTGCTT 58.566 37.500 0.00 0.00 34.29 3.91
295 296 5.295787 TGTCTACTACAACAAGGTTTGCTTG 59.704 40.000 0.00 0.00 34.29 4.01
296 297 4.819630 TCTACTACAACAAGGTTTGCTTGG 59.180 41.667 0.00 0.00 36.23 3.61
297 298 2.100749 ACTACAACAAGGTTTGCTTGGC 59.899 45.455 0.00 0.00 36.23 4.52
298 299 1.194218 ACAACAAGGTTTGCTTGGCT 58.806 45.000 0.00 0.00 36.23 4.75
299 300 1.554617 ACAACAAGGTTTGCTTGGCTT 59.445 42.857 0.00 0.00 36.23 4.35
300 301 2.204237 CAACAAGGTTTGCTTGGCTTC 58.796 47.619 0.00 0.00 36.23 3.86
301 302 0.385390 ACAAGGTTTGCTTGGCTTCG 59.615 50.000 0.00 0.00 36.23 3.79
302 303 0.667993 CAAGGTTTGCTTGGCTTCGA 59.332 50.000 0.00 0.00 0.00 3.71
303 304 1.270550 CAAGGTTTGCTTGGCTTCGAT 59.729 47.619 0.00 0.00 0.00 3.59
304 305 0.883833 AGGTTTGCTTGGCTTCGATG 59.116 50.000 0.00 0.00 0.00 3.84
305 306 0.881118 GGTTTGCTTGGCTTCGATGA 59.119 50.000 1.89 0.00 0.00 2.92
306 307 1.135575 GGTTTGCTTGGCTTCGATGAG 60.136 52.381 1.89 0.00 0.00 2.90
307 308 1.135575 GTTTGCTTGGCTTCGATGAGG 60.136 52.381 1.89 0.00 0.00 3.86
308 309 0.324614 TTGCTTGGCTTCGATGAGGA 59.675 50.000 1.89 0.00 0.00 3.71
309 310 0.324614 TGCTTGGCTTCGATGAGGAA 59.675 50.000 1.89 0.00 0.00 3.36
310 311 1.012841 GCTTGGCTTCGATGAGGAAG 58.987 55.000 1.89 0.00 44.92 3.46
311 312 1.661341 CTTGGCTTCGATGAGGAAGG 58.339 55.000 1.89 0.00 42.88 3.46
312 313 0.253044 TTGGCTTCGATGAGGAAGGG 59.747 55.000 1.89 0.00 42.88 3.95
313 314 1.147153 GGCTTCGATGAGGAAGGGG 59.853 63.158 1.89 0.00 42.88 4.79
314 315 1.524849 GCTTCGATGAGGAAGGGGC 60.525 63.158 1.89 0.00 42.88 5.80
315 316 1.227380 CTTCGATGAGGAAGGGGCG 60.227 63.158 0.00 0.00 39.76 6.13
316 317 1.676678 CTTCGATGAGGAAGGGGCGA 61.677 60.000 0.00 0.00 39.76 5.54
317 318 1.261938 TTCGATGAGGAAGGGGCGAA 61.262 55.000 0.00 0.00 35.69 4.70
318 319 1.227380 CGATGAGGAAGGGGCGAAG 60.227 63.158 0.00 0.00 0.00 3.79
319 320 1.676678 CGATGAGGAAGGGGCGAAGA 61.677 60.000 0.00 0.00 0.00 2.87
320 321 0.179070 GATGAGGAAGGGGCGAAGAC 60.179 60.000 0.00 0.00 0.00 3.01
321 322 1.961180 ATGAGGAAGGGGCGAAGACG 61.961 60.000 0.00 0.00 33.41 4.18
322 323 3.372554 GAGGAAGGGGCGAAGACGG 62.373 68.421 0.00 0.00 33.41 4.79
323 324 3.703127 GGAAGGGGCGAAGACGGT 61.703 66.667 0.00 0.00 33.41 4.83
324 325 2.434359 GAAGGGGCGAAGACGGTG 60.434 66.667 0.00 0.00 33.41 4.94
325 326 2.920912 AAGGGGCGAAGACGGTGA 60.921 61.111 0.00 0.00 33.41 4.02
326 327 3.236003 AAGGGGCGAAGACGGTGAC 62.236 63.158 0.00 0.00 33.41 3.67
347 348 3.764466 CCTTCGGCTCGCTCCAGT 61.764 66.667 0.00 0.00 0.00 4.00
348 349 2.507992 CTTCGGCTCGCTCCAGTG 60.508 66.667 0.00 0.00 0.00 3.66
349 350 4.742201 TTCGGCTCGCTCCAGTGC 62.742 66.667 0.00 0.00 0.00 4.40
352 353 3.123620 GGCTCGCTCCAGTGCAAG 61.124 66.667 0.00 0.00 32.81 4.01
353 354 2.358003 GCTCGCTCCAGTGCAAGT 60.358 61.111 0.00 0.00 0.00 3.16
354 355 1.079819 GCTCGCTCCAGTGCAAGTA 60.080 57.895 0.00 0.00 0.00 2.24
355 356 1.080995 GCTCGCTCCAGTGCAAGTAG 61.081 60.000 0.00 0.00 0.00 2.57
356 357 0.244994 CTCGCTCCAGTGCAAGTAGT 59.755 55.000 0.00 0.00 0.00 2.73
357 358 0.243907 TCGCTCCAGTGCAAGTAGTC 59.756 55.000 0.00 0.00 0.00 2.59
358 359 1.073216 CGCTCCAGTGCAAGTAGTCG 61.073 60.000 0.00 0.00 0.00 4.18
359 360 0.038159 GCTCCAGTGCAAGTAGTCGT 60.038 55.000 0.00 0.00 0.00 4.34
360 361 1.983972 CTCCAGTGCAAGTAGTCGTC 58.016 55.000 0.00 0.00 0.00 4.20
361 362 0.240145 TCCAGTGCAAGTAGTCGTCG 59.760 55.000 0.00 0.00 0.00 5.12
362 363 1.344942 CCAGTGCAAGTAGTCGTCGC 61.345 60.000 0.00 0.00 0.00 5.19
363 364 0.387367 CAGTGCAAGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
364 365 1.135774 CAGTGCAAGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
365 366 1.130749 AGTGCAAGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
366 367 0.450583 TGCAAGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
367 368 0.450983 GCAAGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
368 369 1.794437 GCAAGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
369 370 1.093159 AAGTAGTCGTCGCTAGGTGG 58.907 55.000 0.00 0.00 0.00 4.61
370 371 0.035630 AGTAGTCGTCGCTAGGTGGT 60.036 55.000 0.00 0.00 0.00 4.16
371 372 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
372 373 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
373 374 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
374 375 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
375 376 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
376 377 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
377 378 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
378 379 0.745845 TCGCTAGGTGGTCTACGGAC 60.746 60.000 0.00 0.00 41.43 4.79
414 415 8.570068 TTTTTACTTCTGGTGTTCTTTGTACT 57.430 30.769 0.00 0.00 0.00 2.73
415 416 9.669887 TTTTTACTTCTGGTGTTCTTTGTACTA 57.330 29.630 0.00 0.00 0.00 1.82
416 417 8.652810 TTTACTTCTGGTGTTCTTTGTACTAC 57.347 34.615 0.00 0.00 0.00 2.73
417 418 5.608449 ACTTCTGGTGTTCTTTGTACTACC 58.392 41.667 0.00 0.00 0.00 3.18
418 419 5.365895 ACTTCTGGTGTTCTTTGTACTACCT 59.634 40.000 0.00 0.00 0.00 3.08
419 420 5.881923 TCTGGTGTTCTTTGTACTACCTT 57.118 39.130 0.00 0.00 0.00 3.50
420 421 5.607477 TCTGGTGTTCTTTGTACTACCTTG 58.393 41.667 0.00 0.00 0.00 3.61
421 422 5.364446 TCTGGTGTTCTTTGTACTACCTTGA 59.636 40.000 0.00 0.00 0.00 3.02
422 423 5.362263 TGGTGTTCTTTGTACTACCTTGAC 58.638 41.667 0.00 0.00 0.00 3.18
423 424 5.104859 TGGTGTTCTTTGTACTACCTTGACA 60.105 40.000 0.00 0.00 0.00 3.58
424 425 5.465724 GGTGTTCTTTGTACTACCTTGACAG 59.534 44.000 0.00 0.00 0.00 3.51
425 426 6.047231 GTGTTCTTTGTACTACCTTGACAGT 58.953 40.000 0.00 0.00 0.00 3.55
426 427 6.537660 GTGTTCTTTGTACTACCTTGACAGTT 59.462 38.462 0.00 0.00 0.00 3.16
427 428 6.537301 TGTTCTTTGTACTACCTTGACAGTTG 59.463 38.462 0.00 0.00 0.00 3.16
428 429 6.474140 TCTTTGTACTACCTTGACAGTTGA 57.526 37.500 0.00 0.00 0.00 3.18
429 430 6.278363 TCTTTGTACTACCTTGACAGTTGAC 58.722 40.000 0.00 0.00 0.00 3.18
430 431 4.233123 TGTACTACCTTGACAGTTGACG 57.767 45.455 0.00 0.00 0.00 4.35
431 432 3.884693 TGTACTACCTTGACAGTTGACGA 59.115 43.478 0.00 0.00 0.00 4.20
432 433 4.338964 TGTACTACCTTGACAGTTGACGAA 59.661 41.667 0.00 0.00 0.00 3.85
433 434 4.602340 ACTACCTTGACAGTTGACGAAT 57.398 40.909 0.00 0.00 0.00 3.34
434 435 5.717078 ACTACCTTGACAGTTGACGAATA 57.283 39.130 0.00 0.00 0.00 1.75
435 436 5.710984 ACTACCTTGACAGTTGACGAATAG 58.289 41.667 0.00 0.00 0.00 1.73
436 437 4.866508 ACCTTGACAGTTGACGAATAGA 57.133 40.909 0.00 0.00 0.00 1.98
437 438 5.407407 ACCTTGACAGTTGACGAATAGAT 57.593 39.130 0.00 0.00 0.00 1.98
438 439 5.411781 ACCTTGACAGTTGACGAATAGATC 58.588 41.667 0.00 0.00 0.00 2.75
498 542 2.159028 TGTAGCATTGCCGTGTAGCATA 60.159 45.455 4.70 0.00 43.64 3.14
560 604 3.607741 GATCCATGCATGCATAGCTAGT 58.392 45.455 31.73 14.93 34.91 2.57
562 606 2.082231 CCATGCATGCATAGCTAGTCC 58.918 52.381 31.73 0.00 34.91 3.85
564 608 0.397941 TGCATGCATAGCTAGTCCCC 59.602 55.000 18.46 0.00 0.00 4.81
565 609 0.397941 GCATGCATAGCTAGTCCCCA 59.602 55.000 14.21 0.00 0.00 4.96
577 621 3.380320 GCTAGTCCCCACGCAAAAATAAT 59.620 43.478 0.00 0.00 0.00 1.28
580 624 6.238925 GCTAGTCCCCACGCAAAAATAATAAT 60.239 38.462 0.00 0.00 0.00 1.28
617 790 2.719376 CCGGATGGTGGCCAATTAG 58.281 57.895 7.24 0.00 36.95 1.73
620 793 0.751643 GGATGGTGGCCAATTAGCGT 60.752 55.000 7.24 0.00 36.95 5.07
621 794 1.102978 GATGGTGGCCAATTAGCGTT 58.897 50.000 7.24 0.00 36.95 4.84
669 845 3.876914 GGTGCATCTGTATCCGAATTGAA 59.123 43.478 0.00 0.00 0.00 2.69
670 846 4.260784 GGTGCATCTGTATCCGAATTGAAC 60.261 45.833 0.00 0.00 0.00 3.18
671 847 3.555547 TGCATCTGTATCCGAATTGAACG 59.444 43.478 0.00 0.00 0.00 3.95
860 1066 4.163458 CACCTATATATACCCCGCACCAAT 59.837 45.833 0.00 0.00 0.00 3.16
863 1069 4.919774 ATATATACCCCGCACCAATGAA 57.080 40.909 0.00 0.00 0.00 2.57
912 1120 5.295540 GCAAAGCAAGCTAGCTAATCTACTT 59.704 40.000 19.70 12.03 45.89 2.24
1104 1350 0.320858 TTCGCGCATACCTCCACAAA 60.321 50.000 8.75 0.00 0.00 2.83
1203 1449 3.318555 GATGAGCTCAGCGCGTCG 61.319 66.667 22.96 0.00 45.59 5.12
1263 1509 2.637383 GCTCAGGACCTCCGTCGTT 61.637 63.158 0.00 0.00 40.17 3.85
1455 1701 2.982130 CAACTCCTGCGCCTACCT 59.018 61.111 4.18 0.00 0.00 3.08
1548 1794 1.350193 CAATGCTCGTCACGCTAGTT 58.650 50.000 0.00 0.00 0.00 2.24
1593 1839 2.675423 AGCGGCTCTGTCGGTGTA 60.675 61.111 0.00 0.00 40.63 2.90
1968 2214 2.583593 GAGCGCGTGGACTCCATC 60.584 66.667 8.43 0.00 35.28 3.51
2094 2340 0.806868 TCAAGAACGACGCTACCGAT 59.193 50.000 0.00 0.00 38.29 4.18
2350 2596 1.383109 ATGACGGAGGAGGATGCCA 60.383 57.895 0.00 0.00 0.00 4.92
2442 2688 2.159212 TGGTGACAAGTTCGTTCTTCGA 60.159 45.455 0.00 0.00 42.10 3.71
2588 2834 7.721399 CAGGAGCTACACAAATCCCTATATTTT 59.279 37.037 0.00 0.00 31.86 1.82
2593 2839 7.255486 GCTACACAAATCCCTATATTTTGGGTC 60.255 40.741 7.76 0.00 41.79 4.46
2599 2845 8.362639 CAAATCCCTATATTTTGGGTCTGATTG 58.637 37.037 2.87 0.66 43.74 2.67
2603 2849 6.265422 CCCTATATTTTGGGTCTGATTGTTCC 59.735 42.308 0.00 0.00 38.65 3.62
2770 3040 4.801891 TGAATGGACACGAGTTACTGTAC 58.198 43.478 0.00 0.00 0.00 2.90
2771 3041 4.278919 TGAATGGACACGAGTTACTGTACA 59.721 41.667 0.00 0.00 35.66 2.90
2772 3042 3.631145 TGGACACGAGTTACTGTACAC 57.369 47.619 0.00 0.00 0.00 2.90
2773 3043 2.294233 TGGACACGAGTTACTGTACACC 59.706 50.000 0.00 0.00 0.00 4.16
2774 3044 2.352127 GGACACGAGTTACTGTACACCC 60.352 54.545 0.00 0.00 0.00 4.61
2775 3045 2.555757 GACACGAGTTACTGTACACCCT 59.444 50.000 0.00 0.00 0.00 4.34
2776 3046 2.555757 ACACGAGTTACTGTACACCCTC 59.444 50.000 0.00 0.00 0.00 4.30
2777 3047 2.094854 CACGAGTTACTGTACACCCTCC 60.095 54.545 0.00 0.00 0.00 4.30
2778 3048 1.131883 CGAGTTACTGTACACCCTCCG 59.868 57.143 0.00 0.00 0.00 4.63
2779 3049 2.165998 GAGTTACTGTACACCCTCCGT 58.834 52.381 0.00 0.00 0.00 4.69
2780 3050 2.560105 GAGTTACTGTACACCCTCCGTT 59.440 50.000 0.00 0.00 0.00 4.44
2781 3051 2.967887 AGTTACTGTACACCCTCCGTTT 59.032 45.455 0.00 0.00 0.00 3.60
2782 3052 3.006217 AGTTACTGTACACCCTCCGTTTC 59.994 47.826 0.00 0.00 0.00 2.78
2783 3053 1.713297 ACTGTACACCCTCCGTTTCT 58.287 50.000 0.00 0.00 0.00 2.52
2784 3054 2.044758 ACTGTACACCCTCCGTTTCTT 58.955 47.619 0.00 0.00 0.00 2.52
2785 3055 2.436911 ACTGTACACCCTCCGTTTCTTT 59.563 45.455 0.00 0.00 0.00 2.52
2786 3056 3.118149 ACTGTACACCCTCCGTTTCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
2787 3057 3.881089 CTGTACACCCTCCGTTTCTTTTT 59.119 43.478 0.00 0.00 0.00 1.94
2788 3058 5.033589 TGTACACCCTCCGTTTCTTTTTA 57.966 39.130 0.00 0.00 0.00 1.52
2789 3059 4.815846 TGTACACCCTCCGTTTCTTTTTAC 59.184 41.667 0.00 0.00 0.00 2.01
2790 3060 4.160642 ACACCCTCCGTTTCTTTTTACT 57.839 40.909 0.00 0.00 0.00 2.24
2791 3061 4.529897 ACACCCTCCGTTTCTTTTTACTT 58.470 39.130 0.00 0.00 0.00 2.24
2792 3062 4.577693 ACACCCTCCGTTTCTTTTTACTTC 59.422 41.667 0.00 0.00 0.00 3.01
2793 3063 3.811497 ACCCTCCGTTTCTTTTTACTTCG 59.189 43.478 0.00 0.00 0.00 3.79
2794 3064 3.364664 CCCTCCGTTTCTTTTTACTTCGC 60.365 47.826 0.00 0.00 0.00 4.70
2795 3065 3.466836 CTCCGTTTCTTTTTACTTCGCG 58.533 45.455 0.00 0.00 0.00 5.87
2796 3066 2.865551 TCCGTTTCTTTTTACTTCGCGT 59.134 40.909 5.77 0.00 0.00 6.01
2797 3067 4.047822 TCCGTTTCTTTTTACTTCGCGTA 58.952 39.130 5.77 0.00 0.00 4.42
2798 3068 4.685628 TCCGTTTCTTTTTACTTCGCGTAT 59.314 37.500 5.77 0.00 0.00 3.06
2799 3069 5.861251 TCCGTTTCTTTTTACTTCGCGTATA 59.139 36.000 5.77 0.00 0.00 1.47
2800 3070 6.364706 TCCGTTTCTTTTTACTTCGCGTATAA 59.635 34.615 5.77 0.37 0.00 0.98
2801 3071 6.675747 CCGTTTCTTTTTACTTCGCGTATAAG 59.324 38.462 5.77 5.09 0.00 1.73
2802 3072 7.410728 CCGTTTCTTTTTACTTCGCGTATAAGA 60.411 37.037 12.42 7.50 32.15 2.10
2803 3073 8.106348 CGTTTCTTTTTACTTCGCGTATAAGAT 58.894 33.333 12.42 0.97 33.18 2.40
2804 3074 9.750882 GTTTCTTTTTACTTCGCGTATAAGATT 57.249 29.630 12.42 0.00 33.18 2.40
2806 3076 9.749490 TTCTTTTTACTTCGCGTATAAGATTTG 57.251 29.630 12.42 0.00 33.18 2.32
2807 3077 8.385111 TCTTTTTACTTCGCGTATAAGATTTGG 58.615 33.333 12.42 0.20 30.53 3.28
2808 3078 7.599630 TTTTACTTCGCGTATAAGATTTGGT 57.400 32.000 12.42 0.00 0.00 3.67
2809 3079 6.817270 TTACTTCGCGTATAAGATTTGGTC 57.183 37.500 12.42 0.00 0.00 4.02
2810 3080 4.751060 ACTTCGCGTATAAGATTTGGTCA 58.249 39.130 12.42 0.00 0.00 4.02
2811 3081 5.172934 ACTTCGCGTATAAGATTTGGTCAA 58.827 37.500 12.42 0.00 0.00 3.18
2812 3082 5.640357 ACTTCGCGTATAAGATTTGGTCAAA 59.360 36.000 12.42 0.00 34.46 2.69
2813 3083 6.148150 ACTTCGCGTATAAGATTTGGTCAAAA 59.852 34.615 12.42 0.00 33.56 2.44
2814 3084 6.671614 TCGCGTATAAGATTTGGTCAAAAT 57.328 33.333 5.77 0.00 41.33 1.82
2828 3098 8.472683 TTTGGTCAAAATCAAACTACACAAAG 57.527 30.769 0.00 0.00 0.00 2.77
2829 3099 7.164230 TGGTCAAAATCAAACTACACAAAGT 57.836 32.000 0.00 0.00 0.00 2.66
2830 3100 7.607250 TGGTCAAAATCAAACTACACAAAGTT 58.393 30.769 0.00 0.00 41.46 2.66
2831 3101 8.740906 TGGTCAAAATCAAACTACACAAAGTTA 58.259 29.630 0.00 0.00 38.76 2.24
2832 3102 9.233232 GGTCAAAATCAAACTACACAAAGTTAG 57.767 33.333 0.00 0.00 38.76 2.34
2833 3103 9.997482 GTCAAAATCAAACTACACAAAGTTAGA 57.003 29.630 0.00 0.00 38.76 2.10
2834 3104 9.997482 TCAAAATCAAACTACACAAAGTTAGAC 57.003 29.630 0.00 0.00 38.76 2.59
2835 3105 9.233232 CAAAATCAAACTACACAAAGTTAGACC 57.767 33.333 0.00 0.00 38.76 3.85
2836 3106 8.514330 AAATCAAACTACACAAAGTTAGACCA 57.486 30.769 0.00 0.00 38.76 4.02
2837 3107 8.514330 AATCAAACTACACAAAGTTAGACCAA 57.486 30.769 0.00 0.00 38.76 3.67
2838 3108 7.925043 TCAAACTACACAAAGTTAGACCAAA 57.075 32.000 0.00 0.00 38.76 3.28
2839 3109 8.514330 TCAAACTACACAAAGTTAGACCAAAT 57.486 30.769 0.00 0.00 38.76 2.32
2840 3110 8.962679 TCAAACTACACAAAGTTAGACCAAATT 58.037 29.630 0.00 0.00 38.76 1.82
2841 3111 9.581099 CAAACTACACAAAGTTAGACCAAATTT 57.419 29.630 0.00 0.00 38.76 1.82
2912 3182 8.266420 GAAAATTCATTTCATGACGCATCTAG 57.734 34.615 0.00 0.00 45.58 2.43
2913 3183 6.932356 AATTCATTTCATGACGCATCTAGT 57.068 33.333 0.00 0.00 39.39 2.57
2914 3184 8.437360 AAATTCATTTCATGACGCATCTAGTA 57.563 30.769 0.00 0.00 39.39 1.82
2915 3185 8.437360 AATTCATTTCATGACGCATCTAGTAA 57.563 30.769 0.00 0.00 39.39 2.24
2916 3186 8.613060 ATTCATTTCATGACGCATCTAGTAAT 57.387 30.769 0.00 0.00 39.39 1.89
2917 3187 9.710900 ATTCATTTCATGACGCATCTAGTAATA 57.289 29.630 0.00 0.00 39.39 0.98
2918 3188 9.710900 TTCATTTCATGACGCATCTAGTAATAT 57.289 29.630 0.00 0.00 39.39 1.28
2919 3189 9.710900 TCATTTCATGACGCATCTAGTAATATT 57.289 29.630 0.00 0.00 33.59 1.28
2920 3190 9.750882 CATTTCATGACGCATCTAGTAATATTG 57.249 33.333 0.00 0.00 0.00 1.90
2921 3191 9.710900 ATTTCATGACGCATCTAGTAATATTGA 57.289 29.630 0.00 0.00 0.00 2.57
2922 3192 9.710900 TTTCATGACGCATCTAGTAATATTGAT 57.289 29.630 0.00 0.00 0.00 2.57
2923 3193 9.710900 TTCATGACGCATCTAGTAATATTGATT 57.289 29.630 0.00 0.00 0.00 2.57
2924 3194 9.710900 TCATGACGCATCTAGTAATATTGATTT 57.289 29.630 0.00 0.00 0.00 2.17
2925 3195 9.964253 CATGACGCATCTAGTAATATTGATTTC 57.036 33.333 0.00 0.00 0.00 2.17
2926 3196 9.710900 ATGACGCATCTAGTAATATTGATTTCA 57.289 29.630 0.00 0.00 0.00 2.69
2927 3197 9.710900 TGACGCATCTAGTAATATTGATTTCAT 57.289 29.630 0.00 0.00 0.00 2.57
2996 3266 5.405935 AAAGCTTGACTTTGACCAAACTT 57.594 34.783 0.00 0.00 47.00 2.66
2997 3267 5.405935 AAGCTTGACTTTGACCAAACTTT 57.594 34.783 0.00 0.00 33.71 2.66
2998 3268 6.524101 AAGCTTGACTTTGACCAAACTTTA 57.476 33.333 0.00 0.00 33.71 1.85
2999 3269 6.715347 AGCTTGACTTTGACCAAACTTTAT 57.285 33.333 0.00 0.00 0.00 1.40
3000 3270 7.817418 AGCTTGACTTTGACCAAACTTTATA 57.183 32.000 0.00 0.00 0.00 0.98
3001 3271 8.409358 AGCTTGACTTTGACCAAACTTTATAT 57.591 30.769 0.00 0.00 0.00 0.86
3002 3272 8.299570 AGCTTGACTTTGACCAAACTTTATATG 58.700 33.333 0.00 0.00 0.00 1.78
3003 3273 7.062255 GCTTGACTTTGACCAAACTTTATATGC 59.938 37.037 0.00 0.00 0.00 3.14
3004 3274 7.517614 TGACTTTGACCAAACTTTATATGCA 57.482 32.000 0.00 0.00 0.00 3.96
3005 3275 7.592938 TGACTTTGACCAAACTTTATATGCAG 58.407 34.615 0.00 0.00 0.00 4.41
3006 3276 7.446931 TGACTTTGACCAAACTTTATATGCAGA 59.553 33.333 0.00 0.00 0.00 4.26
3007 3277 7.593825 ACTTTGACCAAACTTTATATGCAGAC 58.406 34.615 0.00 0.00 0.00 3.51
3008 3278 7.448469 ACTTTGACCAAACTTTATATGCAGACT 59.552 33.333 0.00 0.00 0.00 3.24
3009 3279 8.856153 TTTGACCAAACTTTATATGCAGACTA 57.144 30.769 0.00 0.00 0.00 2.59
3010 3280 8.856153 TTGACCAAACTTTATATGCAGACTAA 57.144 30.769 0.00 0.00 0.00 2.24
3011 3281 8.856153 TGACCAAACTTTATATGCAGACTAAA 57.144 30.769 0.00 0.00 0.00 1.85
3012 3282 9.290988 TGACCAAACTTTATATGCAGACTAAAA 57.709 29.630 0.00 0.00 0.00 1.52
3023 3293 6.566197 ATGCAGACTAAAAAGAAACAGAGG 57.434 37.500 0.00 0.00 0.00 3.69
3024 3294 4.821805 TGCAGACTAAAAAGAAACAGAGGG 59.178 41.667 0.00 0.00 0.00 4.30
3025 3295 5.063880 GCAGACTAAAAAGAAACAGAGGGA 58.936 41.667 0.00 0.00 0.00 4.20
3026 3296 5.180304 GCAGACTAAAAAGAAACAGAGGGAG 59.820 44.000 0.00 0.00 0.00 4.30
3027 3297 6.292150 CAGACTAAAAAGAAACAGAGGGAGT 58.708 40.000 0.00 0.00 0.00 3.85
3028 3298 7.442656 CAGACTAAAAAGAAACAGAGGGAGTA 58.557 38.462 0.00 0.00 0.00 2.59
3041 3311 3.961408 AGAGGGAGTATTTGCGACTGTAT 59.039 43.478 0.00 0.00 0.00 2.29
3045 3315 4.439057 GGAGTATTTGCGACTGTATTCCA 58.561 43.478 0.00 0.00 0.00 3.53
3046 3316 4.873827 GGAGTATTTGCGACTGTATTCCAA 59.126 41.667 0.00 0.00 0.00 3.53
3070 3340 1.002257 AGTGACGAATGCATGCCCA 60.002 52.632 16.68 0.00 0.00 5.36
3099 3369 6.692392 TCGCGATCAATCAATAAATATACGC 58.308 36.000 3.71 0.00 38.25 4.42
3104 3374 7.633664 CGATCAATCAATAAATATACGCTGCAG 59.366 37.037 10.11 10.11 0.00 4.41
3106 3376 8.825667 TCAATCAATAAATATACGCTGCAGTA 57.174 30.769 16.64 1.38 0.00 2.74
3107 3377 9.435688 TCAATCAATAAATATACGCTGCAGTAT 57.564 29.630 16.64 9.60 40.16 2.12
3149 3419 9.983804 GTTAAGTCATCTATTTTAAAACGGAGG 57.016 33.333 1.97 6.55 0.00 4.30
3150 3420 9.947433 TTAAGTCATCTATTTTAAAACGGAGGA 57.053 29.630 1.97 8.66 0.00 3.71
3151 3421 8.857694 AAGTCATCTATTTTAAAACGGAGGAA 57.142 30.769 15.79 4.22 0.00 3.36
3152 3422 8.494016 AGTCATCTATTTTAAAACGGAGGAAG 57.506 34.615 15.79 4.66 0.00 3.46
3155 3425 9.947433 TCATCTATTTTAAAACGGAGGAAGTAA 57.053 29.630 1.97 0.00 0.00 2.24
3185 3455 2.125912 CAGACCGAAGCCTGGACG 60.126 66.667 0.00 0.00 0.00 4.79
3222 3492 7.782644 CCAACTTCCCATTAAATTGGTCCTATA 59.217 37.037 0.00 0.00 34.77 1.31
3310 3580 4.988486 GTGCTTGCACCGCAGCAC 62.988 66.667 21.75 21.75 46.66 4.40
3315 3585 2.498761 CTTGCACCGCAGCACTAACG 62.499 60.000 0.00 0.00 45.61 3.18
3372 3642 7.303261 GGACGTACATAATTCAGTGATCGATA 58.697 38.462 0.00 0.00 0.00 2.92
3522 3792 4.095632 TGACTCAATCAAAGCAAAACACGA 59.904 37.500 0.00 0.00 33.02 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.505557 CAGGTAACGGGTCGACGC 60.506 66.667 21.72 21.72 46.39 5.19
9 10 2.436646 CAGCTGCCCAGGTAACGG 60.437 66.667 0.00 0.00 46.39 4.44
10 11 2.436646 CCAGCTGCCCAGGTAACG 60.437 66.667 8.66 0.00 46.39 3.18
11 12 2.044946 CCCAGCTGCCCAGGTAAC 60.045 66.667 8.66 0.00 37.39 2.50
12 13 3.338250 CCCCAGCTGCCCAGGTAA 61.338 66.667 8.66 0.00 37.39 2.85
13 14 4.675303 ACCCCAGCTGCCCAGGTA 62.675 66.667 8.66 0.00 37.39 3.08
22 23 4.223125 TTGGCAGCAACCCCAGCT 62.223 61.111 0.00 0.00 44.62 4.24
23 24 3.994853 GTTGGCAGCAACCCCAGC 61.995 66.667 0.00 0.00 31.73 4.85
24 25 3.305516 GGTTGGCAGCAACCCCAG 61.306 66.667 12.48 0.00 46.62 4.45
29 30 3.615709 GGGTGGGTTGGCAGCAAC 61.616 66.667 3.14 0.71 0.00 4.17
33 34 3.491598 AACTCGGGTGGGTTGGCAG 62.492 63.158 0.00 0.00 0.00 4.85
34 35 3.485346 GAACTCGGGTGGGTTGGCA 62.485 63.158 0.00 0.00 0.00 4.92
35 36 2.671963 GAACTCGGGTGGGTTGGC 60.672 66.667 0.00 0.00 0.00 4.52
36 37 2.358247 CGAACTCGGGTGGGTTGG 60.358 66.667 0.00 0.00 35.37 3.77
37 38 1.374252 CTCGAACTCGGGTGGGTTG 60.374 63.158 0.00 0.00 40.29 3.77
38 39 3.057337 CTCGAACTCGGGTGGGTT 58.943 61.111 0.00 0.00 40.29 4.11
53 54 3.126225 ACGTCCGAGCCGAGACTC 61.126 66.667 0.00 0.00 0.00 3.36
54 55 3.432588 CACGTCCGAGCCGAGACT 61.433 66.667 0.00 0.00 0.00 3.24
55 56 3.735029 ACACGTCCGAGCCGAGAC 61.735 66.667 0.00 2.28 0.00 3.36
56 57 3.733960 CACACGTCCGAGCCGAGA 61.734 66.667 0.00 0.00 0.00 4.04
57 58 3.052620 ATCACACGTCCGAGCCGAG 62.053 63.158 0.00 0.00 0.00 4.63
58 59 3.060000 ATCACACGTCCGAGCCGA 61.060 61.111 0.00 0.00 0.00 5.54
59 60 2.880879 CATCACACGTCCGAGCCG 60.881 66.667 0.00 0.00 0.00 5.52
60 61 3.188786 GCATCACACGTCCGAGCC 61.189 66.667 0.00 0.00 0.00 4.70
61 62 2.125912 AGCATCACACGTCCGAGC 60.126 61.111 0.00 0.00 0.00 5.03
62 63 1.869574 CGAGCATCACACGTCCGAG 60.870 63.158 0.00 0.00 33.17 4.63
63 64 2.178273 CGAGCATCACACGTCCGA 59.822 61.111 0.00 0.00 33.17 4.55
64 65 3.545481 GCGAGCATCACACGTCCG 61.545 66.667 0.00 0.00 34.56 4.79
65 66 2.432456 TGCGAGCATCACACGTCC 60.432 61.111 0.00 0.00 34.56 4.79
66 67 1.409227 CTCTGCGAGCATCACACGTC 61.409 60.000 0.00 0.00 34.56 4.34
67 68 1.445066 CTCTGCGAGCATCACACGT 60.445 57.895 0.00 0.00 34.56 4.49
68 69 1.010935 AACTCTGCGAGCATCACACG 61.011 55.000 0.00 0.00 32.04 4.49
69 70 1.127582 GAAACTCTGCGAGCATCACAC 59.872 52.381 0.00 0.00 32.04 3.82
70 71 1.001293 AGAAACTCTGCGAGCATCACA 59.999 47.619 0.00 0.00 32.04 3.58
71 72 1.719600 AGAAACTCTGCGAGCATCAC 58.280 50.000 0.00 0.00 32.04 3.06
72 73 2.028658 AGAAGAAACTCTGCGAGCATCA 60.029 45.455 0.00 0.00 32.04 3.07
73 74 2.615869 AGAAGAAACTCTGCGAGCATC 58.384 47.619 0.00 0.00 32.04 3.91
74 75 2.758736 AGAAGAAACTCTGCGAGCAT 57.241 45.000 0.00 0.00 32.04 3.79
75 76 3.876274 ATAGAAGAAACTCTGCGAGCA 57.124 42.857 0.00 0.00 32.04 4.26
76 77 6.648725 TTTTATAGAAGAAACTCTGCGAGC 57.351 37.500 5.63 0.00 32.04 5.03
98 99 3.934457 CTAACCCTCGTTGGCATTTTT 57.066 42.857 0.00 0.00 33.17 1.94
113 114 0.611062 GACCAACCCAAGGGCTAACC 60.611 60.000 4.70 0.00 39.32 2.85
114 115 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
115 116 2.047769 TAGACCAACCCAAGGGCTAA 57.952 50.000 4.70 0.00 44.68 3.09
116 117 1.631898 GTTAGACCAACCCAAGGGCTA 59.368 52.381 4.70 0.00 44.68 3.93
118 119 0.404426 AGTTAGACCAACCCAAGGGC 59.596 55.000 4.70 0.00 37.93 5.19
119 120 2.971901 AAGTTAGACCAACCCAAGGG 57.028 50.000 2.91 2.91 37.93 3.95
141 142 4.634443 GCTAGAGCCACGGAGAAATAAAAA 59.366 41.667 0.00 0.00 34.31 1.94
142 143 4.189231 GCTAGAGCCACGGAGAAATAAAA 58.811 43.478 0.00 0.00 34.31 1.52
143 144 3.196901 TGCTAGAGCCACGGAGAAATAAA 59.803 43.478 0.00 0.00 41.18 1.40
144 145 2.764010 TGCTAGAGCCACGGAGAAATAA 59.236 45.455 0.00 0.00 41.18 1.40
145 146 2.384828 TGCTAGAGCCACGGAGAAATA 58.615 47.619 0.00 0.00 41.18 1.40
158 159 5.530519 TTGTTACAGCGAAAATGCTAGAG 57.469 39.130 0.00 0.00 45.23 2.43
186 187 1.611491 GGAGAGAAGCGTAGATCAGGG 59.389 57.143 0.00 0.00 0.00 4.45
187 188 2.302260 TGGAGAGAAGCGTAGATCAGG 58.698 52.381 0.00 0.00 0.00 3.86
188 189 3.364864 CGATGGAGAGAAGCGTAGATCAG 60.365 52.174 0.00 0.00 0.00 2.90
189 190 2.550180 CGATGGAGAGAAGCGTAGATCA 59.450 50.000 0.00 0.00 0.00 2.92
190 191 2.095466 CCGATGGAGAGAAGCGTAGATC 60.095 54.545 0.00 0.00 0.00 2.75
191 192 1.883275 CCGATGGAGAGAAGCGTAGAT 59.117 52.381 0.00 0.00 0.00 1.98
192 193 1.309950 CCGATGGAGAGAAGCGTAGA 58.690 55.000 0.00 0.00 0.00 2.59
193 194 0.318275 GCCGATGGAGAGAAGCGTAG 60.318 60.000 0.00 0.00 0.00 3.51
194 195 1.734137 GCCGATGGAGAGAAGCGTA 59.266 57.895 0.00 0.00 0.00 4.42
195 196 2.496817 GCCGATGGAGAGAAGCGT 59.503 61.111 0.00 0.00 0.00 5.07
196 197 2.656651 CGCCGATGGAGAGAAGCG 60.657 66.667 0.00 0.00 37.39 4.68
197 198 2.279784 CCGCCGATGGAGAGAAGC 60.280 66.667 0.00 0.00 0.00 3.86
198 199 2.279784 GCCGCCGATGGAGAGAAG 60.280 66.667 0.00 0.00 0.00 2.85
199 200 4.207281 CGCCGCCGATGGAGAGAA 62.207 66.667 0.00 0.00 36.29 2.87
211 212 3.869272 CAGAACAGCATCCGCCGC 61.869 66.667 0.00 0.00 39.83 6.53
212 213 3.197790 CCAGAACAGCATCCGCCG 61.198 66.667 0.00 0.00 39.83 6.46
213 214 2.045926 ACCAGAACAGCATCCGCC 60.046 61.111 0.00 0.00 39.83 6.13
214 215 3.044059 GCACCAGAACAGCATCCGC 62.044 63.158 0.00 0.00 38.99 5.54
215 216 2.743752 CGCACCAGAACAGCATCCG 61.744 63.158 0.00 0.00 0.00 4.18
216 217 3.044059 GCGCACCAGAACAGCATCC 62.044 63.158 0.30 0.00 0.00 3.51
217 218 2.037136 AGCGCACCAGAACAGCATC 61.037 57.895 11.47 0.00 0.00 3.91
218 219 2.033141 AGCGCACCAGAACAGCAT 59.967 55.556 11.47 0.00 0.00 3.79
219 220 2.974148 CAGCGCACCAGAACAGCA 60.974 61.111 11.47 0.00 0.00 4.41
220 221 3.730761 CCAGCGCACCAGAACAGC 61.731 66.667 11.47 0.00 0.00 4.40
221 222 2.281070 ACCAGCGCACCAGAACAG 60.281 61.111 11.47 0.00 0.00 3.16
222 223 2.280797 GACCAGCGCACCAGAACA 60.281 61.111 11.47 0.00 0.00 3.18
223 224 2.167398 TAGGACCAGCGCACCAGAAC 62.167 60.000 11.47 0.00 0.00 3.01
224 225 1.264749 ATAGGACCAGCGCACCAGAA 61.265 55.000 11.47 0.00 0.00 3.02
225 226 1.685765 ATAGGACCAGCGCACCAGA 60.686 57.895 11.47 0.33 0.00 3.86
226 227 1.522355 CATAGGACCAGCGCACCAG 60.522 63.158 11.47 0.00 0.00 4.00
227 228 2.584064 CATAGGACCAGCGCACCA 59.416 61.111 11.47 0.00 0.00 4.17
228 229 2.203070 CCATAGGACCAGCGCACC 60.203 66.667 11.47 7.54 0.00 5.01
229 230 2.203070 CCCATAGGACCAGCGCAC 60.203 66.667 11.47 0.00 33.47 5.34
230 231 3.479203 CCCCATAGGACCAGCGCA 61.479 66.667 11.47 0.00 38.24 6.09
231 232 4.937431 GCCCCATAGGACCAGCGC 62.937 72.222 0.00 0.00 38.24 5.92
232 233 4.256180 GGCCCCATAGGACCAGCG 62.256 72.222 0.00 0.00 37.96 5.18
238 239 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
239 240 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
240 241 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
241 242 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
242 243 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
243 244 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
244 245 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
245 246 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
246 247 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
247 248 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
248 249 0.458025 GGGAAGTCGTCGTGCTAAGG 60.458 60.000 0.00 0.00 0.00 2.69
249 250 0.797249 CGGGAAGTCGTCGTGCTAAG 60.797 60.000 0.00 0.00 0.00 2.18
250 251 1.210931 CGGGAAGTCGTCGTGCTAA 59.789 57.895 0.00 0.00 0.00 3.09
251 252 1.672030 TCGGGAAGTCGTCGTGCTA 60.672 57.895 0.00 0.00 0.00 3.49
252 253 2.981909 TCGGGAAGTCGTCGTGCT 60.982 61.111 0.00 0.00 0.00 4.40
253 254 2.804090 GTCGGGAAGTCGTCGTGC 60.804 66.667 0.00 0.00 0.00 5.34
254 255 1.442184 CAGTCGGGAAGTCGTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
255 256 1.849976 GACAGTCGGGAAGTCGTCGT 61.850 60.000 0.00 0.00 0.00 4.34
256 257 1.154263 GACAGTCGGGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
257 258 1.130186 GTAGACAGTCGGGAAGTCGTC 59.870 57.143 0.00 0.00 37.36 4.20
258 259 1.163554 GTAGACAGTCGGGAAGTCGT 58.836 55.000 0.00 0.00 37.36 4.34
259 260 1.451067 AGTAGACAGTCGGGAAGTCG 58.549 55.000 0.00 0.00 37.36 4.18
260 261 3.341823 TGTAGTAGACAGTCGGGAAGTC 58.658 50.000 0.00 0.00 32.86 3.01
261 262 3.430042 TGTAGTAGACAGTCGGGAAGT 57.570 47.619 0.00 0.00 32.86 3.01
262 263 3.504906 TGTTGTAGTAGACAGTCGGGAAG 59.495 47.826 0.00 0.00 39.88 3.46
263 264 3.489355 TGTTGTAGTAGACAGTCGGGAA 58.511 45.455 0.00 0.00 39.88 3.97
264 265 3.144657 TGTTGTAGTAGACAGTCGGGA 57.855 47.619 0.00 0.00 39.88 5.14
265 266 3.367087 CCTTGTTGTAGTAGACAGTCGGG 60.367 52.174 0.00 0.00 39.88 5.14
266 267 3.255149 ACCTTGTTGTAGTAGACAGTCGG 59.745 47.826 0.00 0.00 39.88 4.79
267 268 4.500603 ACCTTGTTGTAGTAGACAGTCG 57.499 45.455 0.00 0.00 39.88 4.18
268 269 5.050295 GCAAACCTTGTTGTAGTAGACAGTC 60.050 44.000 0.00 0.00 39.88 3.51
269 270 4.814771 GCAAACCTTGTTGTAGTAGACAGT 59.185 41.667 0.00 0.00 39.88 3.55
270 271 5.057149 AGCAAACCTTGTTGTAGTAGACAG 58.943 41.667 0.00 0.00 39.88 3.51
271 272 5.031066 AGCAAACCTTGTTGTAGTAGACA 57.969 39.130 0.00 0.00 35.78 3.41
272 273 5.748592 CAAGCAAACCTTGTTGTAGTAGAC 58.251 41.667 0.00 0.00 44.74 2.59
284 285 1.270550 CATCGAAGCCAAGCAAACCTT 59.729 47.619 0.00 0.00 0.00 3.50
285 286 0.883833 CATCGAAGCCAAGCAAACCT 59.116 50.000 0.00 0.00 0.00 3.50
286 287 0.881118 TCATCGAAGCCAAGCAAACC 59.119 50.000 0.00 0.00 0.00 3.27
287 288 1.135575 CCTCATCGAAGCCAAGCAAAC 60.136 52.381 0.00 0.00 0.00 2.93
288 289 1.167851 CCTCATCGAAGCCAAGCAAA 58.832 50.000 0.00 0.00 0.00 3.68
289 290 0.324614 TCCTCATCGAAGCCAAGCAA 59.675 50.000 0.00 0.00 0.00 3.91
290 291 0.324614 TTCCTCATCGAAGCCAAGCA 59.675 50.000 0.00 0.00 0.00 3.91
291 292 1.012841 CTTCCTCATCGAAGCCAAGC 58.987 55.000 0.00 0.00 33.33 4.01
292 293 1.661341 CCTTCCTCATCGAAGCCAAG 58.339 55.000 0.00 0.00 38.35 3.61
293 294 0.253044 CCCTTCCTCATCGAAGCCAA 59.747 55.000 0.00 0.00 38.35 4.52
294 295 1.626356 CCCCTTCCTCATCGAAGCCA 61.626 60.000 0.00 0.00 38.35 4.75
295 296 1.147153 CCCCTTCCTCATCGAAGCC 59.853 63.158 0.00 0.00 38.35 4.35
296 297 1.524849 GCCCCTTCCTCATCGAAGC 60.525 63.158 0.00 0.00 38.35 3.86
297 298 1.227380 CGCCCCTTCCTCATCGAAG 60.227 63.158 0.00 0.00 39.22 3.79
298 299 1.261938 TTCGCCCCTTCCTCATCGAA 61.262 55.000 0.00 0.00 34.22 3.71
299 300 1.676678 CTTCGCCCCTTCCTCATCGA 61.677 60.000 0.00 0.00 0.00 3.59
300 301 1.227380 CTTCGCCCCTTCCTCATCG 60.227 63.158 0.00 0.00 0.00 3.84
301 302 0.179070 GTCTTCGCCCCTTCCTCATC 60.179 60.000 0.00 0.00 0.00 2.92
302 303 1.908483 GTCTTCGCCCCTTCCTCAT 59.092 57.895 0.00 0.00 0.00 2.90
303 304 2.646175 CGTCTTCGCCCCTTCCTCA 61.646 63.158 0.00 0.00 0.00 3.86
304 305 2.184579 CGTCTTCGCCCCTTCCTC 59.815 66.667 0.00 0.00 0.00 3.71
305 306 3.391382 CCGTCTTCGCCCCTTCCT 61.391 66.667 0.00 0.00 35.54 3.36
306 307 3.703127 ACCGTCTTCGCCCCTTCC 61.703 66.667 0.00 0.00 35.54 3.46
307 308 2.434359 CACCGTCTTCGCCCCTTC 60.434 66.667 0.00 0.00 35.54 3.46
308 309 2.920912 TCACCGTCTTCGCCCCTT 60.921 61.111 0.00 0.00 35.54 3.95
309 310 3.692406 GTCACCGTCTTCGCCCCT 61.692 66.667 0.00 0.00 35.54 4.79
315 316 4.719369 AGGCGCGTCACCGTCTTC 62.719 66.667 15.58 0.00 40.81 2.87
317 318 4.719369 GAAGGCGCGTCACCGTCT 62.719 66.667 15.58 0.00 46.38 4.18
331 332 2.507992 CACTGGAGCGAGCCGAAG 60.508 66.667 0.00 0.00 0.00 3.79
332 333 4.742201 GCACTGGAGCGAGCCGAA 62.742 66.667 0.00 0.00 0.00 4.30
335 336 3.123620 CTTGCACTGGAGCGAGCC 61.124 66.667 0.00 0.00 39.04 4.70
338 339 0.243907 GACTACTTGCACTGGAGCGA 59.756 55.000 0.00 0.00 37.31 4.93
339 340 1.073216 CGACTACTTGCACTGGAGCG 61.073 60.000 0.00 0.00 37.31 5.03
340 341 0.038159 ACGACTACTTGCACTGGAGC 60.038 55.000 0.00 0.00 0.00 4.70
341 342 1.729472 CGACGACTACTTGCACTGGAG 60.729 57.143 0.00 0.00 0.00 3.86
342 343 0.240145 CGACGACTACTTGCACTGGA 59.760 55.000 0.00 0.00 0.00 3.86
343 344 1.344942 GCGACGACTACTTGCACTGG 61.345 60.000 0.00 0.00 0.00 4.00
344 345 0.387367 AGCGACGACTACTTGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
345 346 1.130749 CTAGCGACGACTACTTGCACT 59.869 52.381 0.00 0.00 0.00 4.40
346 347 1.536149 CTAGCGACGACTACTTGCAC 58.464 55.000 0.00 0.00 0.00 4.57
347 348 0.450583 CCTAGCGACGACTACTTGCA 59.549 55.000 0.00 0.00 0.00 4.08
348 349 0.450983 ACCTAGCGACGACTACTTGC 59.549 55.000 0.00 0.00 0.00 4.01
349 350 1.202154 CCACCTAGCGACGACTACTTG 60.202 57.143 0.00 0.00 0.00 3.16
350 351 1.093159 CCACCTAGCGACGACTACTT 58.907 55.000 0.00 0.00 0.00 2.24
351 352 0.035630 ACCACCTAGCGACGACTACT 60.036 55.000 0.00 0.00 0.00 2.57
352 353 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
353 354 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
354 355 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
355 356 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
356 357 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
357 358 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
358 359 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
359 360 0.745845 GTCCGTAGACCACCTAGCGA 60.746 60.000 0.00 0.00 37.00 4.93
360 361 1.726265 GTCCGTAGACCACCTAGCG 59.274 63.158 0.00 0.00 37.00 4.26
389 390 8.570068 AGTACAAAGAACACCAGAAGTAAAAA 57.430 30.769 0.00 0.00 0.00 1.94
390 391 9.101655 GTAGTACAAAGAACACCAGAAGTAAAA 57.898 33.333 0.00 0.00 0.00 1.52
391 392 7.712205 GGTAGTACAAAGAACACCAGAAGTAAA 59.288 37.037 2.06 0.00 0.00 2.01
392 393 7.070322 AGGTAGTACAAAGAACACCAGAAGTAA 59.930 37.037 2.06 0.00 0.00 2.24
393 394 6.552350 AGGTAGTACAAAGAACACCAGAAGTA 59.448 38.462 2.06 0.00 0.00 2.24
394 395 5.365895 AGGTAGTACAAAGAACACCAGAAGT 59.634 40.000 2.06 0.00 0.00 3.01
395 396 5.855045 AGGTAGTACAAAGAACACCAGAAG 58.145 41.667 2.06 0.00 0.00 2.85
396 397 5.881923 AGGTAGTACAAAGAACACCAGAA 57.118 39.130 2.06 0.00 0.00 3.02
397 398 5.364446 TCAAGGTAGTACAAAGAACACCAGA 59.636 40.000 2.06 0.00 0.00 3.86
398 399 5.465724 GTCAAGGTAGTACAAAGAACACCAG 59.534 44.000 2.06 0.00 0.00 4.00
399 400 5.104859 TGTCAAGGTAGTACAAAGAACACCA 60.105 40.000 2.06 0.00 0.00 4.17
400 401 5.362263 TGTCAAGGTAGTACAAAGAACACC 58.638 41.667 2.06 0.00 0.00 4.16
401 402 6.047231 ACTGTCAAGGTAGTACAAAGAACAC 58.953 40.000 2.06 0.00 0.00 3.32
402 403 6.229936 ACTGTCAAGGTAGTACAAAGAACA 57.770 37.500 2.06 0.00 0.00 3.18
403 404 6.759827 TCAACTGTCAAGGTAGTACAAAGAAC 59.240 38.462 2.06 0.00 0.00 3.01
404 405 6.759827 GTCAACTGTCAAGGTAGTACAAAGAA 59.240 38.462 2.06 0.00 0.00 2.52
405 406 6.278363 GTCAACTGTCAAGGTAGTACAAAGA 58.722 40.000 2.06 0.00 0.00 2.52
406 407 5.175126 CGTCAACTGTCAAGGTAGTACAAAG 59.825 44.000 2.06 0.00 0.00 2.77
407 408 5.045215 CGTCAACTGTCAAGGTAGTACAAA 58.955 41.667 2.06 0.00 0.00 2.83
408 409 4.338964 TCGTCAACTGTCAAGGTAGTACAA 59.661 41.667 2.06 0.00 0.00 2.41
409 410 3.884693 TCGTCAACTGTCAAGGTAGTACA 59.115 43.478 2.06 0.00 0.00 2.90
410 411 4.494350 TCGTCAACTGTCAAGGTAGTAC 57.506 45.455 0.00 0.00 0.00 2.73
411 412 5.717078 ATTCGTCAACTGTCAAGGTAGTA 57.283 39.130 0.00 0.00 0.00 1.82
412 413 4.602340 ATTCGTCAACTGTCAAGGTAGT 57.398 40.909 0.00 0.00 0.00 2.73
413 414 5.950883 TCTATTCGTCAACTGTCAAGGTAG 58.049 41.667 0.00 0.00 0.00 3.18
414 415 5.970317 TCTATTCGTCAACTGTCAAGGTA 57.030 39.130 0.00 0.00 0.00 3.08
415 416 4.866508 TCTATTCGTCAACTGTCAAGGT 57.133 40.909 0.00 0.00 0.00 3.50
416 417 4.500837 CGATCTATTCGTCAACTGTCAAGG 59.499 45.833 0.00 0.00 43.01 3.61
417 418 5.612435 CGATCTATTCGTCAACTGTCAAG 57.388 43.478 0.00 0.00 43.01 3.02
457 458 6.072452 GCTACACTTGCTCAAGGATAGTTTTT 60.072 38.462 13.48 0.00 42.53 1.94
458 459 5.412904 GCTACACTTGCTCAAGGATAGTTTT 59.587 40.000 13.48 0.00 42.53 2.43
459 460 4.938226 GCTACACTTGCTCAAGGATAGTTT 59.062 41.667 13.48 0.00 42.53 2.66
460 461 4.020218 TGCTACACTTGCTCAAGGATAGTT 60.020 41.667 13.48 0.00 42.53 2.24
461 462 3.515502 TGCTACACTTGCTCAAGGATAGT 59.484 43.478 13.48 8.77 42.53 2.12
462 463 4.128925 TGCTACACTTGCTCAAGGATAG 57.871 45.455 13.48 13.54 42.53 2.08
463 464 4.760530 ATGCTACACTTGCTCAAGGATA 57.239 40.909 13.48 5.15 42.53 2.59
464 465 3.641434 ATGCTACACTTGCTCAAGGAT 57.359 42.857 13.48 4.33 42.53 3.24
465 466 3.076621 CAATGCTACACTTGCTCAAGGA 58.923 45.455 13.48 0.00 42.53 3.36
468 469 1.541147 GGCAATGCTACACTTGCTCAA 59.459 47.619 4.82 0.00 45.49 3.02
473 474 0.874390 ACACGGCAATGCTACACTTG 59.126 50.000 4.82 0.00 0.00 3.16
669 845 2.026590 GTCAACACGTCCGTCCGT 59.973 61.111 0.00 0.00 42.87 4.69
670 846 2.732094 GGTCAACACGTCCGTCCG 60.732 66.667 0.00 0.00 0.00 4.79
671 847 1.005394 ATGGTCAACACGTCCGTCC 60.005 57.895 0.00 0.00 0.00 4.79
672 848 0.038526 AGATGGTCAACACGTCCGTC 60.039 55.000 4.64 4.64 38.66 4.79
680 856 4.385825 GACACAAAGGTAGATGGTCAACA 58.614 43.478 0.00 0.00 0.00 3.33
781 973 1.618861 CGTTGGATGAGTCGTGAGTC 58.381 55.000 0.00 0.00 0.00 3.36
782 974 0.388649 GCGTTGGATGAGTCGTGAGT 60.389 55.000 0.00 0.00 0.00 3.41
783 975 1.078759 GGCGTTGGATGAGTCGTGAG 61.079 60.000 0.00 0.00 0.00 3.51
860 1066 5.935945 TGGTTTAGTGAATGGAGTTCTTCA 58.064 37.500 0.00 0.00 37.72 3.02
863 1069 4.762251 GCTTGGTTTAGTGAATGGAGTTCT 59.238 41.667 0.00 0.00 37.72 3.01
912 1120 6.040391 GCAAGAAGAATAAGAGGAGAGCTAGA 59.960 42.308 0.00 0.00 0.00 2.43
1104 1350 0.453793 CAGAGATGAAGTCGACGGCT 59.546 55.000 10.46 0.00 0.00 5.52
1203 1449 2.886124 GCAGAGTAAGTCGGCGGC 60.886 66.667 1.71 1.71 36.60 6.53
1263 1509 2.347114 CAGTGTGTCATGCCGGGA 59.653 61.111 2.18 0.00 0.00 5.14
1455 1701 0.687920 TGCGGTTCATGAAGGTGGTA 59.312 50.000 8.80 0.00 0.00 3.25
1593 1839 3.895232 ACTAAGCGTGAGATGTTGGAT 57.105 42.857 0.00 0.00 0.00 3.41
1968 2214 0.892755 ATTTGTGTGGGCTCATGCTG 59.107 50.000 0.00 0.00 39.59 4.41
2350 2596 2.268076 GCACACGGTTGGCCTCATT 61.268 57.895 3.32 0.00 0.00 2.57
2442 2688 3.663202 GACGACCCAACGGCAAAT 58.337 55.556 0.00 0.00 41.34 2.32
2588 2834 7.610580 AAATTTAAAGGAACAATCAGACCCA 57.389 32.000 0.00 0.00 0.00 4.51
2644 2908 6.487331 ACAAAACCGAATAAGAACCACATGTA 59.513 34.615 0.00 0.00 0.00 2.29
2754 3024 2.555757 AGGGTGTACAGTAACTCGTGTC 59.444 50.000 0.00 0.00 0.00 3.67
2770 3040 4.319261 CGAAGTAAAAAGAAACGGAGGGTG 60.319 45.833 0.00 0.00 0.00 4.61
2771 3041 3.811497 CGAAGTAAAAAGAAACGGAGGGT 59.189 43.478 0.00 0.00 0.00 4.34
2772 3042 3.364664 GCGAAGTAAAAAGAAACGGAGGG 60.365 47.826 0.00 0.00 0.00 4.30
2773 3043 3.663493 CGCGAAGTAAAAAGAAACGGAGG 60.663 47.826 0.00 0.00 0.00 4.30
2774 3044 3.060070 ACGCGAAGTAAAAAGAAACGGAG 60.060 43.478 15.93 0.00 0.00 4.63
2775 3045 2.865551 ACGCGAAGTAAAAAGAAACGGA 59.134 40.909 15.93 0.00 0.00 4.69
2776 3046 3.243226 ACGCGAAGTAAAAAGAAACGG 57.757 42.857 15.93 0.00 0.00 4.44
2777 3047 7.439490 TCTTATACGCGAAGTAAAAAGAAACG 58.561 34.615 15.93 0.00 37.91 3.60
2778 3048 9.750882 AATCTTATACGCGAAGTAAAAAGAAAC 57.249 29.630 15.93 0.00 41.03 2.78
2780 3050 9.749490 CAAATCTTATACGCGAAGTAAAAAGAA 57.251 29.630 15.93 0.00 41.03 2.52
2781 3051 8.385111 CCAAATCTTATACGCGAAGTAAAAAGA 58.615 33.333 15.93 11.65 41.47 2.52
2782 3052 8.173130 ACCAAATCTTATACGCGAAGTAAAAAG 58.827 33.333 15.93 6.45 39.04 2.27
2783 3053 8.031848 ACCAAATCTTATACGCGAAGTAAAAA 57.968 30.769 15.93 0.68 39.04 1.94
2784 3054 7.331440 TGACCAAATCTTATACGCGAAGTAAAA 59.669 33.333 15.93 0.00 39.04 1.52
2785 3055 6.812656 TGACCAAATCTTATACGCGAAGTAAA 59.187 34.615 15.93 0.00 39.04 2.01
2786 3056 6.331845 TGACCAAATCTTATACGCGAAGTAA 58.668 36.000 15.93 7.75 39.04 2.24
2787 3057 5.893687 TGACCAAATCTTATACGCGAAGTA 58.106 37.500 15.93 0.00 40.03 2.24
2788 3058 4.751060 TGACCAAATCTTATACGCGAAGT 58.249 39.130 15.93 0.00 0.00 3.01
2789 3059 5.712217 TTGACCAAATCTTATACGCGAAG 57.288 39.130 15.93 6.37 0.00 3.79
2790 3060 6.483385 TTTTGACCAAATCTTATACGCGAA 57.517 33.333 15.93 0.00 0.00 4.70
2791 3061 6.671614 ATTTTGACCAAATCTTATACGCGA 57.328 33.333 15.93 0.00 27.71 5.87
2792 3062 6.953091 GATTTTGACCAAATCTTATACGCG 57.047 37.500 3.53 3.53 45.30 6.01
2802 3072 9.097257 CTTTGTGTAGTTTGATTTTGACCAAAT 57.903 29.630 0.00 0.00 37.84 2.32
2803 3073 8.091449 ACTTTGTGTAGTTTGATTTTGACCAAA 58.909 29.630 0.00 0.00 0.00 3.28
2804 3074 7.607250 ACTTTGTGTAGTTTGATTTTGACCAA 58.393 30.769 0.00 0.00 0.00 3.67
2805 3075 7.164230 ACTTTGTGTAGTTTGATTTTGACCA 57.836 32.000 0.00 0.00 0.00 4.02
2806 3076 9.233232 CTAACTTTGTGTAGTTTGATTTTGACC 57.767 33.333 0.00 0.00 39.08 4.02
2807 3077 9.997482 TCTAACTTTGTGTAGTTTGATTTTGAC 57.003 29.630 0.00 0.00 39.08 3.18
2808 3078 9.997482 GTCTAACTTTGTGTAGTTTGATTTTGA 57.003 29.630 0.00 0.00 40.30 2.69
2809 3079 9.233232 GGTCTAACTTTGTGTAGTTTGATTTTG 57.767 33.333 0.00 0.00 40.30 2.44
2810 3080 8.962679 TGGTCTAACTTTGTGTAGTTTGATTTT 58.037 29.630 0.00 0.00 40.30 1.82
2811 3081 8.514330 TGGTCTAACTTTGTGTAGTTTGATTT 57.486 30.769 0.00 0.00 40.30 2.17
2812 3082 8.514330 TTGGTCTAACTTTGTGTAGTTTGATT 57.486 30.769 0.00 0.00 40.30 2.57
2813 3083 8.514330 TTTGGTCTAACTTTGTGTAGTTTGAT 57.486 30.769 0.00 0.00 40.30 2.57
2814 3084 7.925043 TTTGGTCTAACTTTGTGTAGTTTGA 57.075 32.000 0.00 0.00 39.08 2.69
2815 3085 9.581099 AAATTTGGTCTAACTTTGTGTAGTTTG 57.419 29.630 0.00 0.00 39.08 2.93
2895 3165 9.710900 TCAATATTACTAGATGCGTCATGAAAT 57.289 29.630 8.99 5.43 0.00 2.17
2896 3166 9.710900 ATCAATATTACTAGATGCGTCATGAAA 57.289 29.630 8.99 0.00 0.00 2.69
2897 3167 9.710900 AATCAATATTACTAGATGCGTCATGAA 57.289 29.630 8.99 0.00 0.00 2.57
2898 3168 9.710900 AAATCAATATTACTAGATGCGTCATGA 57.289 29.630 8.99 0.00 0.00 3.07
2899 3169 9.964253 GAAATCAATATTACTAGATGCGTCATG 57.036 33.333 8.99 2.69 0.00 3.07
2900 3170 9.710900 TGAAATCAATATTACTAGATGCGTCAT 57.289 29.630 8.99 0.00 0.00 3.06
2901 3171 9.710900 ATGAAATCAATATTACTAGATGCGTCA 57.289 29.630 8.99 0.00 0.00 4.35
2968 3238 9.308318 GTTTGGTCAAAGTCAAGCTTTATAAAA 57.692 29.630 0.00 0.00 44.95 1.52
2969 3239 8.691797 AGTTTGGTCAAAGTCAAGCTTTATAAA 58.308 29.630 0.00 0.00 44.95 1.40
2970 3240 8.232913 AGTTTGGTCAAAGTCAAGCTTTATAA 57.767 30.769 0.00 0.00 44.95 0.98
2971 3241 7.817418 AGTTTGGTCAAAGTCAAGCTTTATA 57.183 32.000 0.00 0.00 44.95 0.98
2972 3242 6.715347 AGTTTGGTCAAAGTCAAGCTTTAT 57.285 33.333 0.00 0.00 44.95 1.40
2973 3243 6.524101 AAGTTTGGTCAAAGTCAAGCTTTA 57.476 33.333 0.00 0.00 44.95 1.85
2975 3245 5.405935 AAAGTTTGGTCAAAGTCAAGCTT 57.594 34.783 0.00 0.00 43.01 3.74
2976 3246 6.715347 ATAAAGTTTGGTCAAAGTCAAGCT 57.285 33.333 0.00 0.00 36.29 3.74
2977 3247 7.062255 GCATATAAAGTTTGGTCAAAGTCAAGC 59.938 37.037 0.00 0.00 33.15 4.01
2978 3248 8.081633 TGCATATAAAGTTTGGTCAAAGTCAAG 58.918 33.333 0.00 0.00 33.15 3.02
2979 3249 7.946207 TGCATATAAAGTTTGGTCAAAGTCAA 58.054 30.769 0.00 0.00 33.15 3.18
2980 3250 7.446931 TCTGCATATAAAGTTTGGTCAAAGTCA 59.553 33.333 0.00 0.00 33.15 3.41
2981 3251 7.750903 GTCTGCATATAAAGTTTGGTCAAAGTC 59.249 37.037 0.00 0.00 33.15 3.01
2982 3252 7.448469 AGTCTGCATATAAAGTTTGGTCAAAGT 59.552 33.333 0.00 0.00 35.61 2.66
2983 3253 7.820648 AGTCTGCATATAAAGTTTGGTCAAAG 58.179 34.615 0.00 0.00 0.00 2.77
2984 3254 7.759489 AGTCTGCATATAAAGTTTGGTCAAA 57.241 32.000 0.00 0.00 0.00 2.69
2985 3255 8.856153 TTAGTCTGCATATAAAGTTTGGTCAA 57.144 30.769 0.00 0.00 0.00 3.18
2986 3256 8.856153 TTTAGTCTGCATATAAAGTTTGGTCA 57.144 30.769 0.00 0.00 0.00 4.02
2997 3267 9.383519 CCTCTGTTTCTTTTTAGTCTGCATATA 57.616 33.333 0.00 0.00 0.00 0.86
2998 3268 7.337942 CCCTCTGTTTCTTTTTAGTCTGCATAT 59.662 37.037 0.00 0.00 0.00 1.78
2999 3269 6.655003 CCCTCTGTTTCTTTTTAGTCTGCATA 59.345 38.462 0.00 0.00 0.00 3.14
3000 3270 5.474876 CCCTCTGTTTCTTTTTAGTCTGCAT 59.525 40.000 0.00 0.00 0.00 3.96
3001 3271 4.821805 CCCTCTGTTTCTTTTTAGTCTGCA 59.178 41.667 0.00 0.00 0.00 4.41
3002 3272 5.063880 TCCCTCTGTTTCTTTTTAGTCTGC 58.936 41.667 0.00 0.00 0.00 4.26
3003 3273 6.292150 ACTCCCTCTGTTTCTTTTTAGTCTG 58.708 40.000 0.00 0.00 0.00 3.51
3004 3274 6.502074 ACTCCCTCTGTTTCTTTTTAGTCT 57.498 37.500 0.00 0.00 0.00 3.24
3005 3275 8.850007 AATACTCCCTCTGTTTCTTTTTAGTC 57.150 34.615 0.00 0.00 0.00 2.59
3006 3276 9.067986 CAAATACTCCCTCTGTTTCTTTTTAGT 57.932 33.333 0.00 0.00 0.00 2.24
3007 3277 8.023706 GCAAATACTCCCTCTGTTTCTTTTTAG 58.976 37.037 0.00 0.00 0.00 1.85
3008 3278 7.308348 CGCAAATACTCCCTCTGTTTCTTTTTA 60.308 37.037 0.00 0.00 0.00 1.52
3009 3279 6.515035 CGCAAATACTCCCTCTGTTTCTTTTT 60.515 38.462 0.00 0.00 0.00 1.94
3010 3280 5.048713 CGCAAATACTCCCTCTGTTTCTTTT 60.049 40.000 0.00 0.00 0.00 2.27
3011 3281 4.455877 CGCAAATACTCCCTCTGTTTCTTT 59.544 41.667 0.00 0.00 0.00 2.52
3012 3282 4.003648 CGCAAATACTCCCTCTGTTTCTT 58.996 43.478 0.00 0.00 0.00 2.52
3013 3283 3.260884 TCGCAAATACTCCCTCTGTTTCT 59.739 43.478 0.00 0.00 0.00 2.52
3014 3284 3.371285 GTCGCAAATACTCCCTCTGTTTC 59.629 47.826 0.00 0.00 0.00 2.78
3015 3285 3.008049 AGTCGCAAATACTCCCTCTGTTT 59.992 43.478 0.00 0.00 0.00 2.83
3016 3286 2.567615 AGTCGCAAATACTCCCTCTGTT 59.432 45.455 0.00 0.00 0.00 3.16
3017 3287 2.093973 CAGTCGCAAATACTCCCTCTGT 60.094 50.000 0.00 0.00 0.00 3.41
3018 3288 2.093973 ACAGTCGCAAATACTCCCTCTG 60.094 50.000 0.00 0.00 0.00 3.35
3019 3289 2.180276 ACAGTCGCAAATACTCCCTCT 58.820 47.619 0.00 0.00 0.00 3.69
3020 3290 2.674796 ACAGTCGCAAATACTCCCTC 57.325 50.000 0.00 0.00 0.00 4.30
3021 3291 4.443034 GGAATACAGTCGCAAATACTCCCT 60.443 45.833 0.00 0.00 0.00 4.20
3022 3292 3.808174 GGAATACAGTCGCAAATACTCCC 59.192 47.826 0.00 0.00 0.00 4.30
3023 3293 4.439057 TGGAATACAGTCGCAAATACTCC 58.561 43.478 0.00 0.00 0.00 3.85
3024 3294 6.604735 ATTGGAATACAGTCGCAAATACTC 57.395 37.500 0.00 0.00 0.00 2.59
3025 3295 6.202954 GCTATTGGAATACAGTCGCAAATACT 59.797 38.462 0.00 0.00 29.51 2.12
3026 3296 6.363473 GCTATTGGAATACAGTCGCAAATAC 58.637 40.000 0.00 0.00 29.51 1.89
3027 3297 5.176774 CGCTATTGGAATACAGTCGCAAATA 59.823 40.000 0.00 0.00 29.51 1.40
3028 3298 4.024893 CGCTATTGGAATACAGTCGCAAAT 60.025 41.667 0.00 0.00 29.51 2.32
3041 3311 3.186909 CATTCGTCACTCGCTATTGGAA 58.813 45.455 0.00 0.00 39.67 3.53
3045 3315 2.293677 TGCATTCGTCACTCGCTATT 57.706 45.000 0.00 0.00 39.67 1.73
3046 3316 2.130395 CATGCATTCGTCACTCGCTAT 58.870 47.619 0.00 0.00 39.67 2.97
3077 3347 6.409185 GCAGCGTATATTTATTGATTGATCGC 59.591 38.462 0.00 0.00 39.21 4.58
3123 3393 9.983804 CCTCCGTTTTAAAATAGATGACTTAAC 57.016 33.333 3.52 0.00 0.00 2.01
3124 3394 9.947433 TCCTCCGTTTTAAAATAGATGACTTAA 57.053 29.630 3.52 0.00 0.00 1.85
3125 3395 9.947433 TTCCTCCGTTTTAAAATAGATGACTTA 57.053 29.630 3.52 0.00 0.00 2.24
3126 3396 8.857694 TTCCTCCGTTTTAAAATAGATGACTT 57.142 30.769 3.52 0.00 0.00 3.01
3127 3397 8.101419 ACTTCCTCCGTTTTAAAATAGATGACT 58.899 33.333 3.52 0.00 0.00 3.41
3128 3398 8.265165 ACTTCCTCCGTTTTAAAATAGATGAC 57.735 34.615 3.52 0.00 0.00 3.06
3129 3399 9.947433 TTACTTCCTCCGTTTTAAAATAGATGA 57.053 29.630 3.52 4.41 0.00 2.92
3131 3401 9.955102 ACTTACTTCCTCCGTTTTAAAATAGAT 57.045 29.630 3.52 0.00 0.00 1.98
3132 3402 9.783081 AACTTACTTCCTCCGTTTTAAAATAGA 57.217 29.630 3.52 3.61 0.00 1.98
3135 3405 8.905850 TGAAACTTACTTCCTCCGTTTTAAAAT 58.094 29.630 3.52 0.00 0.00 1.82
3136 3406 8.278729 TGAAACTTACTTCCTCCGTTTTAAAA 57.721 30.769 0.00 0.00 0.00 1.52
3137 3407 7.862512 TGAAACTTACTTCCTCCGTTTTAAA 57.137 32.000 0.00 0.00 0.00 1.52
3138 3408 7.769970 TCTTGAAACTTACTTCCTCCGTTTTAA 59.230 33.333 0.00 0.00 0.00 1.52
3139 3409 7.274447 TCTTGAAACTTACTTCCTCCGTTTTA 58.726 34.615 0.00 0.00 0.00 1.52
3140 3410 6.117488 TCTTGAAACTTACTTCCTCCGTTTT 58.883 36.000 0.00 0.00 0.00 2.43
3141 3411 5.677567 TCTTGAAACTTACTTCCTCCGTTT 58.322 37.500 0.00 0.00 0.00 3.60
3142 3412 5.286267 TCTTGAAACTTACTTCCTCCGTT 57.714 39.130 0.00 0.00 0.00 4.44
3143 3413 4.950205 TCTTGAAACTTACTTCCTCCGT 57.050 40.909 0.00 0.00 0.00 4.69
3144 3414 4.093556 GCATCTTGAAACTTACTTCCTCCG 59.906 45.833 0.00 0.00 0.00 4.63
3145 3415 4.396478 GGCATCTTGAAACTTACTTCCTCC 59.604 45.833 0.00 0.00 0.00 4.30
3146 3416 5.003804 TGGCATCTTGAAACTTACTTCCTC 58.996 41.667 0.00 0.00 0.00 3.71
3147 3417 4.985538 TGGCATCTTGAAACTTACTTCCT 58.014 39.130 0.00 0.00 0.00 3.36
3148 3418 5.003804 TCTGGCATCTTGAAACTTACTTCC 58.996 41.667 0.00 0.00 0.00 3.46
3149 3419 5.106515 GGTCTGGCATCTTGAAACTTACTTC 60.107 44.000 0.00 0.00 0.00 3.01
3150 3420 4.762251 GGTCTGGCATCTTGAAACTTACTT 59.238 41.667 0.00 0.00 0.00 2.24
3151 3421 4.327680 GGTCTGGCATCTTGAAACTTACT 58.672 43.478 0.00 0.00 0.00 2.24
3152 3422 3.125316 CGGTCTGGCATCTTGAAACTTAC 59.875 47.826 0.00 0.00 0.00 2.34
3155 3425 1.347707 TCGGTCTGGCATCTTGAAACT 59.652 47.619 0.00 0.00 0.00 2.66
3185 3455 1.652563 GAAGTTGGGAACACACGGC 59.347 57.895 0.00 0.00 42.67 5.68
3222 3492 5.483937 TGGAATTGTATGGCCGATACTCTAT 59.516 40.000 19.53 11.39 38.26 1.98
3232 3502 4.464008 TCTGAAGATGGAATTGTATGGCC 58.536 43.478 0.00 0.00 0.00 5.36
3310 3580 1.068474 CCGTGTCTTTCCTGCGTTAG 58.932 55.000 0.00 0.00 0.00 2.34
3315 3585 2.359975 CCCCCGTGTCTTTCCTGC 60.360 66.667 0.00 0.00 0.00 4.85
3372 3642 4.501571 CCTGTCGATCGTTCCTCCATTTAT 60.502 45.833 15.94 0.00 0.00 1.40
3497 3767 4.741676 GTGTTTTGCTTTGATTGAGTCAGG 59.258 41.667 0.00 0.00 38.29 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.