Multiple sequence alignment - TraesCS7D01G382600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G382600 chr7D 100.000 3536 0 0 1396 4931 496363024 496366559 0.000000e+00 6530.0
1 TraesCS7D01G382600 chr7D 100.000 1123 0 0 1 1123 496361629 496362751 0.000000e+00 2074.0
2 TraesCS7D01G382600 chr7D 85.446 639 68 9 4162 4775 496154258 496154896 4.160000e-180 641.0
3 TraesCS7D01G382600 chr7A 96.171 3578 94 8 1396 4931 561877221 561880797 0.000000e+00 5808.0
4 TraesCS7D01G382600 chr7A 96.313 217 4 2 911 1123 561876879 561877095 2.180000e-93 353.0
5 TraesCS7D01G382600 chr7B 95.805 3552 116 6 1396 4917 524715413 524718961 0.000000e+00 5703.0
6 TraesCS7D01G382600 chr7B 85.446 639 67 12 4162 4775 524613968 524614605 4.160000e-180 641.0
7 TraesCS7D01G382600 chr7B 89.160 369 23 6 473 827 524713850 524714215 1.260000e-120 444.0
8 TraesCS7D01G382600 chr3D 79.127 848 114 47 45 875 382829359 382830160 1.220000e-145 527.0
9 TraesCS7D01G382600 chr3D 80.556 360 51 8 529 875 246619585 246619938 4.900000e-65 259.0
10 TraesCS7D01G382600 chr5D 86.215 428 52 4 44 464 503183552 503183125 1.620000e-124 457.0
11 TraesCS7D01G382600 chr5D 77.184 412 69 18 524 914 503183143 503182736 2.990000e-52 217.0
12 TraesCS7D01G382600 chr5D 78.729 362 43 16 522 875 212571248 212570913 1.390000e-50 211.0
13 TraesCS7D01G382600 chr5D 77.681 345 58 14 542 875 34447108 34446772 5.040000e-45 193.0
14 TraesCS7D01G382600 chr5D 83.237 173 28 1 515 686 371291333 371291161 1.840000e-34 158.0
15 TraesCS7D01G382600 chr5D 77.626 219 43 6 515 732 436770473 436770260 1.440000e-25 128.0
16 TraesCS7D01G382600 chr3B 84.222 469 67 6 48 515 728079598 728079136 2.710000e-122 449.0
17 TraesCS7D01G382600 chr3B 77.344 384 50 11 529 875 352029325 352029708 5.040000e-45 193.0
18 TraesCS7D01G382600 chr4A 83.817 482 61 12 44 517 106899179 106898707 4.530000e-120 442.0
19 TraesCS7D01G382600 chr4A 81.602 337 48 3 45 367 706552262 706552598 2.930000e-67 267.0
20 TraesCS7D01G382600 chr6D 87.978 366 42 2 45 409 114169054 114169418 9.810000e-117 431.0
21 TraesCS7D01G382600 chr6D 83.028 218 32 5 505 721 4515947 4515734 5.040000e-45 193.0
22 TraesCS7D01G382600 chr6D 84.286 140 10 6 748 875 313963682 313963543 5.180000e-25 126.0
23 TraesCS7D01G382600 chr6D 90.741 54 5 0 3242 3295 386103165 386103218 6.850000e-09 73.1
24 TraesCS7D01G382600 chr2A 85.176 398 50 6 44 433 159196409 159196805 2.770000e-107 399.0
25 TraesCS7D01G382600 chr2B 83.005 406 65 4 68 471 325917139 325916736 1.010000e-96 364.0
26 TraesCS7D01G382600 chr2B 81.174 409 73 4 62 468 734224014 734223608 4.760000e-85 326.0
27 TraesCS7D01G382600 chr2B 75.926 378 58 19 521 876 28788431 28788797 3.950000e-36 163.0
28 TraesCS7D01G382600 chr2B 80.571 175 25 7 512 681 4774673 4774843 5.180000e-25 126.0
29 TraesCS7D01G382600 chr1A 83.662 355 40 10 530 875 338601896 338601551 7.970000e-83 318.0
30 TraesCS7D01G382600 chr1A 82.166 157 18 4 729 875 442477685 442477841 5.180000e-25 126.0
31 TraesCS7D01G382600 chr5B 77.698 417 84 8 44 456 572580394 572579983 3.810000e-61 246.0
32 TraesCS7D01G382600 chr2D 77.910 335 52 16 524 848 46206578 46206256 6.520000e-44 189.0
33 TraesCS7D01G382600 chr3A 84.091 132 9 6 756 875 570307022 570307153 3.120000e-22 117.0
34 TraesCS7D01G382600 chrUn 90.698 86 7 1 791 875 94871434 94871349 4.030000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G382600 chr7D 496361629 496366559 4930 False 4302.0 6530 100.0000 1 4931 2 chr7D.!!$F2 4930
1 TraesCS7D01G382600 chr7D 496154258 496154896 638 False 641.0 641 85.4460 4162 4775 1 chr7D.!!$F1 613
2 TraesCS7D01G382600 chr7A 561876879 561880797 3918 False 3080.5 5808 96.2420 911 4931 2 chr7A.!!$F1 4020
3 TraesCS7D01G382600 chr7B 524713850 524718961 5111 False 3073.5 5703 92.4825 473 4917 2 chr7B.!!$F2 4444
4 TraesCS7D01G382600 chr7B 524613968 524614605 637 False 641.0 641 85.4460 4162 4775 1 chr7B.!!$F1 613
5 TraesCS7D01G382600 chr3D 382829359 382830160 801 False 527.0 527 79.1270 45 875 1 chr3D.!!$F2 830
6 TraesCS7D01G382600 chr5D 503182736 503183552 816 True 337.0 457 81.6995 44 914 2 chr5D.!!$R5 870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 350 0.038166 GAAGAGGCCCACCATTGACA 59.962 55.0 0.0 0.0 39.06 3.58 F
1636 2319 0.179000 CTCCAATCCAGCTTACGCCT 59.821 55.0 0.0 0.0 36.60 5.52 F
2161 2844 0.252330 TAACATGGTCGTCAGGGGGA 60.252 55.0 0.0 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2198 2881 1.659233 CCCATTGACGCAAACAGCA 59.341 52.632 0.00 0.0 46.13 4.41 R
2664 3347 0.112995 TGCCAGAGCCCTTCATGTTT 59.887 50.000 0.00 0.0 38.69 2.83 R
4138 4849 1.467734 CTTCATCCACAGAACTGCAGC 59.532 52.381 15.27 0.0 0.00 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 1.130054 AGGCCCTGAAGAGCAAGACA 61.130 55.000 0.00 0.00 0.00 3.41
75 76 0.689623 CCCTGAAGAGCAAGACAGGT 59.310 55.000 15.20 0.00 45.65 4.00
88 89 0.878961 GACAGGTTTCTTCGGCGTGT 60.879 55.000 6.85 0.04 34.52 4.49
126 127 3.545703 CAACTTCAAGGTGGAGTTCAGT 58.454 45.455 0.00 0.00 0.00 3.41
130 131 2.115427 TCAAGGTGGAGTTCAGTGACA 58.885 47.619 0.00 0.00 0.00 3.58
138 139 3.542676 TTCAGTGACACCGGCCGT 61.543 61.111 26.12 9.63 0.00 5.68
225 226 4.144703 GTCGGGAGGCCGAGGAAC 62.145 72.222 0.00 0.00 43.02 3.62
257 258 1.454111 CGGAGATCGAGACCCAGGT 60.454 63.158 0.00 0.00 42.43 4.00
274 275 2.125552 TGGATGCGGAGTTGCTCG 60.126 61.111 0.00 0.00 35.36 5.03
323 333 2.034179 TCACAGCGAAGAAGACGAAGAA 59.966 45.455 0.00 0.00 0.00 2.52
324 334 2.406691 CACAGCGAAGAAGACGAAGAAG 59.593 50.000 0.00 0.00 0.00 2.85
325 335 2.293677 ACAGCGAAGAAGACGAAGAAGA 59.706 45.455 0.00 0.00 0.00 2.87
331 341 0.608640 GAAGACGAAGAAGAGGCCCA 59.391 55.000 0.00 0.00 0.00 5.36
338 348 1.004745 GAAGAAGAGGCCCACCATTGA 59.995 52.381 0.00 0.00 39.06 2.57
340 350 0.038166 GAAGAGGCCCACCATTGACA 59.962 55.000 0.00 0.00 39.06 3.58
341 351 0.706433 AAGAGGCCCACCATTGACAT 59.294 50.000 0.00 0.00 39.06 3.06
342 352 0.706433 AGAGGCCCACCATTGACATT 59.294 50.000 0.00 0.00 39.06 2.71
345 355 1.063717 AGGCCCACCATTGACATTAGG 60.064 52.381 0.00 0.00 39.06 2.69
346 356 1.341976 GGCCCACCATTGACATTAGGT 60.342 52.381 0.00 0.00 35.26 3.08
367 378 3.950254 CGATAGCGACGAGGCGGT 61.950 66.667 8.43 8.43 44.84 5.68
372 383 4.796231 GCGACGAGGCGGTGATGT 62.796 66.667 0.00 0.00 0.00 3.06
413 424 1.220749 GGAGTATGTGCAGGCCGAA 59.779 57.895 0.00 0.00 0.00 4.30
437 449 0.667792 AGTTCTTCTGGAAGCGCGAC 60.668 55.000 12.10 0.04 38.28 5.19
449 461 3.368040 CGCGACGCTGAGAAGAAG 58.632 61.111 19.02 0.00 0.00 2.85
450 462 1.154207 CGCGACGCTGAGAAGAAGA 60.154 57.895 19.02 0.00 0.00 2.87
451 463 0.729478 CGCGACGCTGAGAAGAAGAA 60.729 55.000 19.02 0.00 0.00 2.52
452 464 0.988439 GCGACGCTGAGAAGAAGAAG 59.012 55.000 13.73 0.00 0.00 2.85
453 465 1.401670 GCGACGCTGAGAAGAAGAAGA 60.402 52.381 13.73 0.00 0.00 2.87
454 466 2.922758 GCGACGCTGAGAAGAAGAAGAA 60.923 50.000 13.73 0.00 0.00 2.52
455 467 2.914214 CGACGCTGAGAAGAAGAAGAAG 59.086 50.000 0.00 0.00 0.00 2.85
456 468 3.365465 CGACGCTGAGAAGAAGAAGAAGA 60.365 47.826 0.00 0.00 0.00 2.87
457 469 4.551388 GACGCTGAGAAGAAGAAGAAGAA 58.449 43.478 0.00 0.00 0.00 2.52
458 470 4.555262 ACGCTGAGAAGAAGAAGAAGAAG 58.445 43.478 0.00 0.00 0.00 2.85
459 471 4.279671 ACGCTGAGAAGAAGAAGAAGAAGA 59.720 41.667 0.00 0.00 0.00 2.87
460 472 5.221342 ACGCTGAGAAGAAGAAGAAGAAGAA 60.221 40.000 0.00 0.00 0.00 2.52
461 473 5.345741 CGCTGAGAAGAAGAAGAAGAAGAAG 59.654 44.000 0.00 0.00 0.00 2.85
462 474 6.454795 GCTGAGAAGAAGAAGAAGAAGAAGA 58.545 40.000 0.00 0.00 0.00 2.87
463 475 6.928492 GCTGAGAAGAAGAAGAAGAAGAAGAA 59.072 38.462 0.00 0.00 0.00 2.52
464 476 7.116805 GCTGAGAAGAAGAAGAAGAAGAAGAAG 59.883 40.741 0.00 0.00 0.00 2.85
465 477 8.243961 TGAGAAGAAGAAGAAGAAGAAGAAGA 57.756 34.615 0.00 0.00 0.00 2.87
466 478 8.700051 TGAGAAGAAGAAGAAGAAGAAGAAGAA 58.300 33.333 0.00 0.00 0.00 2.52
467 479 9.196552 GAGAAGAAGAAGAAGAAGAAGAAGAAG 57.803 37.037 0.00 0.00 0.00 2.85
468 480 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
469 481 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
470 482 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
471 483 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
550 562 0.898789 AAGAAGAAGGACGAGGCCGA 60.899 55.000 0.00 0.00 39.50 5.54
569 582 2.758327 CCTCGACGGTGATCCCCA 60.758 66.667 0.00 0.00 0.00 4.96
603 616 1.189524 TCGAACTGGGGTGAATCGGT 61.190 55.000 0.00 0.00 34.47 4.69
648 661 2.844348 ACCCGGACAAGGATGAGTTATT 59.156 45.455 0.73 0.00 0.00 1.40
651 664 3.370527 CCGGACAAGGATGAGTTATTGGT 60.371 47.826 0.00 0.00 0.00 3.67
659 672 3.378427 GGATGAGTTATTGGTGCAGTTCC 59.622 47.826 0.00 0.00 0.00 3.62
661 674 3.146066 TGAGTTATTGGTGCAGTTCCAC 58.854 45.455 0.00 0.00 34.45 4.02
715 736 7.275888 TCGGTTTAGTTCAAGTAGTAGTTCA 57.724 36.000 0.00 0.00 0.00 3.18
858 1337 8.518151 TTTGCTATGTTTGAATTACATGTGTG 57.482 30.769 9.11 0.00 36.89 3.82
869 1348 9.891828 TTGAATTACATGTGTGAAATGAAGTAC 57.108 29.630 9.11 0.00 0.00 2.73
875 1354 8.677148 ACATGTGTGAAATGAAGTACTAGTTT 57.323 30.769 0.00 0.00 0.00 2.66
876 1355 9.120538 ACATGTGTGAAATGAAGTACTAGTTTT 57.879 29.630 0.00 0.00 0.00 2.43
877 1356 9.950680 CATGTGTGAAATGAAGTACTAGTTTTT 57.049 29.630 0.00 0.00 0.00 1.94
1114 1608 4.798682 TCCCCGCTTCTCCCTCCC 62.799 72.222 0.00 0.00 0.00 4.30
1629 2312 3.801997 CCGCCCTCCAATCCAGCT 61.802 66.667 0.00 0.00 0.00 4.24
1636 2319 0.179000 CTCCAATCCAGCTTACGCCT 59.821 55.000 0.00 0.00 36.60 5.52
1777 2460 0.320771 CAAGAACAGTGGCCGCTACT 60.321 55.000 20.73 15.47 0.00 2.57
1869 2552 2.126502 GCGGTTGATTTGCACGGG 60.127 61.111 0.00 0.00 0.00 5.28
1948 2631 3.243359 TGGGCATTCAGAAAGTTCCTT 57.757 42.857 0.00 0.00 0.00 3.36
2124 2807 1.073025 ATGTGGCAGCGTCAAGGAA 59.927 52.632 0.00 0.00 0.00 3.36
2161 2844 0.252330 TAACATGGTCGTCAGGGGGA 60.252 55.000 0.00 0.00 0.00 4.81
2271 2954 0.472471 TTGGGAGGATCGGGTTATGC 59.528 55.000 0.00 0.00 34.37 3.14
2481 3164 1.557269 ATTGCAGAGGCGAGGAGGTT 61.557 55.000 0.00 0.00 45.35 3.50
2514 3197 0.684805 TTGCTGCCATCATGGATGCA 60.685 50.000 16.98 16.98 40.96 3.96
2837 3520 6.323482 TCTGCTGTTATGAGAGCTTATTCTCT 59.677 38.462 8.14 0.00 45.48 3.10
3205 3888 9.485206 CAATCTTTGACAATTTGAGGAGAAATT 57.515 29.630 2.79 0.00 36.21 1.82
3212 3895 7.340232 TGACAATTTGAGGAGAAATTATCAGGG 59.660 37.037 2.79 0.00 35.05 4.45
3213 3896 6.608808 ACAATTTGAGGAGAAATTATCAGGGG 59.391 38.462 2.79 0.00 34.46 4.79
3276 3959 0.685097 TGGGCTTGCTTAACGAGTCT 59.315 50.000 0.00 0.00 34.50 3.24
3917 4601 3.120060 GCTGCTCAGTTAGTCACAAATGG 60.120 47.826 0.00 0.00 0.00 3.16
4184 4895 1.548719 CTCAAGTCCATCCGTGTGGTA 59.451 52.381 3.58 0.00 40.27 3.25
4242 4953 1.294659 GGCCGAGTCTGAAACTGCTG 61.295 60.000 0.00 0.00 38.74 4.41
4476 5190 2.600731 AGAATGACTTTGACTCGCTCG 58.399 47.619 0.00 0.00 0.00 5.03
4533 5247 5.428184 AAATCTTCTTCCATCGGAGAAGT 57.572 39.130 8.10 0.00 43.58 3.01
4738 5481 3.766151 CAGCAGCACTAACCATTCATTG 58.234 45.455 0.00 0.00 0.00 2.82
4752 5495 5.129815 ACCATTCATTGCATAAATTCTGGCT 59.870 36.000 0.00 0.00 0.00 4.75
4780 5525 7.531871 GCATGTTATAATGTGCTTCTATTGTCG 59.468 37.037 14.33 0.00 34.85 4.35
4813 5558 3.508402 TGACGCATCAGTTTGGTAGACTA 59.492 43.478 0.00 0.00 0.00 2.59
4878 5628 3.483085 GCATCGAACTAGTTTAACACGGC 60.483 47.826 10.02 4.63 0.00 5.68
4889 5639 1.732941 TAACACGGCCAGCATTAGTG 58.267 50.000 2.24 2.99 38.63 2.74
4901 5651 4.940046 CCAGCATTAGTGTCTTTGAGATGT 59.060 41.667 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.676151 CCTGTCTTGCTCTTCAGGGC 60.676 60.000 9.53 0.00 42.38 5.19
59 60 3.845781 AGAAACCTGTCTTGCTCTTCA 57.154 42.857 0.00 0.00 0.00 3.02
62 63 2.548920 CCGAAGAAACCTGTCTTGCTCT 60.549 50.000 0.00 0.00 37.98 4.09
64 65 1.884235 CCGAAGAAACCTGTCTTGCT 58.116 50.000 0.00 0.00 37.98 3.91
72 73 1.597027 CCACACGCCGAAGAAACCT 60.597 57.895 0.00 0.00 0.00 3.50
75 76 2.975799 GCCCACACGCCGAAGAAA 60.976 61.111 0.00 0.00 0.00 2.52
112 113 1.141053 GGTGTCACTGAACTCCACCTT 59.859 52.381 2.35 0.00 41.83 3.50
113 114 0.759346 GGTGTCACTGAACTCCACCT 59.241 55.000 2.35 0.00 41.83 4.00
221 222 1.673923 CCGGGAAGTTAAGGTCGTTCC 60.674 57.143 0.00 0.00 38.21 3.62
225 226 1.180029 TCTCCGGGAAGTTAAGGTCG 58.820 55.000 0.00 0.00 0.00 4.79
231 232 2.723322 TCTCGATCTCCGGGAAGTTA 57.277 50.000 0.00 0.00 46.20 2.24
257 258 2.125552 CGAGCAACTCCGCATCCA 60.126 61.111 0.00 0.00 0.00 3.41
296 297 2.094494 GTCTTCTTCGCTGTGATCTCCA 60.094 50.000 0.00 0.00 0.00 3.86
306 307 2.094957 CCTCTTCTTCGTCTTCTTCGCT 60.095 50.000 0.00 0.00 0.00 4.93
307 308 2.255316 CCTCTTCTTCGTCTTCTTCGC 58.745 52.381 0.00 0.00 0.00 4.70
323 333 0.706433 AATGTCAATGGTGGGCCTCT 59.294 50.000 4.53 0.00 35.27 3.69
324 334 2.301346 CTAATGTCAATGGTGGGCCTC 58.699 52.381 4.53 0.00 35.27 4.70
325 335 1.063717 CCTAATGTCAATGGTGGGCCT 60.064 52.381 4.53 0.00 35.27 5.19
331 341 1.742411 CGCCGACCTAATGTCAATGGT 60.742 52.381 0.00 0.00 44.71 3.55
338 348 0.039437 CGCTATCGCCGACCTAATGT 60.039 55.000 0.00 0.00 0.00 2.71
340 350 0.240411 GTCGCTATCGCCGACCTAAT 59.760 55.000 0.00 0.00 46.78 1.73
341 351 1.650912 GTCGCTATCGCCGACCTAA 59.349 57.895 0.00 0.00 46.78 2.69
342 352 3.337619 GTCGCTATCGCCGACCTA 58.662 61.111 0.00 0.00 46.78 3.08
346 356 3.646976 CCTCGTCGCTATCGCCGA 61.647 66.667 0.00 0.00 35.26 5.54
367 378 0.246360 ATGCACGAACCTCGACATCA 59.754 50.000 2.59 0.00 43.74 3.07
372 383 1.446099 GCTCATGCACGAACCTCGA 60.446 57.895 2.59 0.00 43.97 4.04
413 424 1.001406 CGCTTCCAGAAGAACTCCTGT 59.999 52.381 11.57 0.00 40.79 4.00
437 449 4.804108 TCTTCTTCTTCTTCTTCTCAGCG 58.196 43.478 0.00 0.00 0.00 5.18
440 452 8.243961 TCTTCTTCTTCTTCTTCTTCTTCTCA 57.756 34.615 0.00 0.00 0.00 3.27
444 456 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
445 457 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
446 458 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
447 459 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
448 460 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
449 461 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
450 462 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
451 463 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
452 464 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
453 465 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
454 466 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
455 467 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
456 468 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
457 469 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
458 470 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
459 471 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
460 472 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
461 473 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
462 474 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
463 475 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
464 476 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
465 477 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
466 478 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
467 479 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
468 480 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
469 481 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
470 482 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
471 483 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
550 562 2.758737 GGGATCACCGTCGAGGGT 60.759 66.667 23.70 23.70 46.96 4.34
585 598 1.019278 CACCGATTCACCCCAGTTCG 61.019 60.000 0.00 0.00 0.00 3.95
587 600 1.131303 TCCACCGATTCACCCCAGTT 61.131 55.000 0.00 0.00 0.00 3.16
603 616 3.273654 ACCCCTCGTCCTCCTCCA 61.274 66.667 0.00 0.00 0.00 3.86
659 672 0.668535 TACTCATCATCGGAGCGGTG 59.331 55.000 0.00 0.00 39.56 4.94
661 674 0.955178 ACTACTCATCATCGGAGCGG 59.045 55.000 0.00 0.00 35.79 5.52
1785 2468 4.755123 CACCAGTTATTGAAAAGGACGAGT 59.245 41.667 0.00 0.00 0.00 4.18
2017 2700 2.094597 CCACAAACATGTCCATCGCATT 60.095 45.455 0.00 0.00 0.00 3.56
2198 2881 1.659233 CCCATTGACGCAAACAGCA 59.341 52.632 0.00 0.00 46.13 4.41
2271 2954 2.326664 CTATAGCTCACAGCATCAGCG 58.673 52.381 0.00 0.00 45.56 5.18
2481 3164 3.324268 TGGCAGCAAAATTCTTGGATGAA 59.676 39.130 0.00 0.00 0.00 2.57
2514 3197 4.019174 CCCAAAGACACCTATCTGCAAAT 58.981 43.478 0.00 0.00 0.00 2.32
2664 3347 0.112995 TGCCAGAGCCCTTCATGTTT 59.887 50.000 0.00 0.00 38.69 2.83
2837 3520 2.756760 GCTTCAGATGCCAAGGAATTGA 59.243 45.455 0.00 0.00 0.00 2.57
2939 3622 1.133167 TCTCCACTTGTCCTGTCTCCA 60.133 52.381 0.00 0.00 0.00 3.86
3205 3888 5.610557 TGTATGAAACATCATCCCCCTGATA 59.389 40.000 0.00 0.00 34.11 2.15
3240 3923 5.184892 AGCCCATGTTCTTGTAGAGAAAT 57.815 39.130 0.00 0.00 45.59 2.17
3409 4092 5.185454 TGACGCATCTGGAAAGATGTTATT 58.815 37.500 15.19 0.62 45.39 1.40
3592 4275 2.555757 GCCTTGAAAGTTGCTCACAGAT 59.444 45.455 0.00 0.00 0.00 2.90
3611 4294 2.424956 GGATCAATTGTCAACTCAGGCC 59.575 50.000 5.13 0.00 0.00 5.19
3917 4601 5.749109 CACGAGGTGAACTATCTTAACATCC 59.251 44.000 0.00 0.00 35.23 3.51
4138 4849 1.467734 CTTCATCCACAGAACTGCAGC 59.532 52.381 15.27 0.00 0.00 5.25
4184 4895 4.762765 ACAAGAGACTCTATGACGTCAGTT 59.237 41.667 24.41 10.73 32.68 3.16
4242 4953 3.594603 TCCTCACATTCCTTTCTCGTC 57.405 47.619 0.00 0.00 0.00 4.20
4476 5190 2.668457 CGAGTGTGCTCACATAAGTTCC 59.332 50.000 20.16 0.00 46.01 3.62
4738 5481 3.788937 ACATGCAAGCCAGAATTTATGC 58.211 40.909 0.00 0.00 0.00 3.14
4752 5495 8.685427 ACAATAGAAGCACATTATAACATGCAA 58.315 29.630 19.67 7.26 40.63 4.08
4780 5525 3.310774 ACTGATGCGTCAAAGTATCATGC 59.689 43.478 10.41 0.00 41.19 4.06
4878 5628 4.940046 ACATCTCAAAGACACTAATGCTGG 59.060 41.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.