Multiple sequence alignment - TraesCS7D01G382500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G382500 chr7D 100.000 8555 0 0 1 8555 496152697 496161251 0.000000e+00 15799.0
1 TraesCS7D01G382500 chr7D 91.736 2396 131 33 2919 5272 350139280 350141650 0.000000e+00 3265.0
2 TraesCS7D01G382500 chr7D 92.601 1865 125 12 3305 5160 90628005 90626145 0.000000e+00 2667.0
3 TraesCS7D01G382500 chr7D 94.074 540 16 6 8025 8555 403099635 403099103 0.000000e+00 806.0
4 TraesCS7D01G382500 chr7D 92.565 538 24 4 8026 8555 566013606 566013077 0.000000e+00 758.0
5 TraesCS7D01G382500 chr7D 85.446 639 68 9 1562 2200 496365790 496366403 7.240000e-180 641.0
6 TraesCS7D01G382500 chr7D 86.927 436 46 4 7099 7533 496367171 496367596 6.010000e-131 479.0
7 TraesCS7D01G382500 chr7D 80.617 583 50 25 8030 8550 582123273 582122692 8.050000e-105 392.0
8 TraesCS7D01G382500 chr7D 80.357 280 47 7 2632 2908 633743228 633742954 1.130000e-48 206.0
9 TraesCS7D01G382500 chr7D 92.045 88 7 0 2217 2304 265703331 265703418 3.240000e-24 124.0
10 TraesCS7D01G382500 chr7D 93.421 76 5 0 2229 2304 266883059 266882984 7.020000e-21 113.0
11 TraesCS7D01G382500 chr7D 95.745 47 2 0 5710 5756 496158331 496158377 9.210000e-10 76.8
12 TraesCS7D01G382500 chr7D 95.745 47 2 0 5635 5681 496158406 496158452 9.210000e-10 76.8
13 TraesCS7D01G382500 chr1D 93.322 2381 96 29 2922 5272 412083935 412086282 0.000000e+00 3458.0
14 TraesCS7D01G382500 chr1D 93.878 539 19 6 8026 8555 408563354 408563887 0.000000e+00 800.0
15 TraesCS7D01G382500 chr1D 77.512 209 34 10 292 491 480561254 480561458 7.020000e-21 113.0
16 TraesCS7D01G382500 chr1D 93.878 49 3 0 292 340 243069717 243069765 3.310000e-09 75.0
17 TraesCS7D01G382500 chr1D 93.617 47 1 2 292 337 458574063 458574108 1.540000e-07 69.4
18 TraesCS7D01G382500 chr7B 94.989 2215 88 6 726 2922 524613121 524615330 0.000000e+00 3454.0
19 TraesCS7D01G382500 chr7B 95.941 1774 51 14 5930 7688 524618218 524619985 0.000000e+00 2857.0
20 TraesCS7D01G382500 chr7B 94.494 563 27 3 5316 5878 524615460 524616018 0.000000e+00 865.0
21 TraesCS7D01G382500 chr7B 88.537 410 34 7 57 454 524604638 524605046 1.290000e-132 484.0
22 TraesCS7D01G382500 chr7B 85.780 436 52 4 7099 7533 524719709 524720135 3.640000e-123 453.0
23 TraesCS7D01G382500 chr7B 93.750 224 14 0 7680 7903 524621753 524621976 3.830000e-88 337.0
24 TraesCS7D01G382500 chr7B 89.412 170 13 3 599 763 524612958 524613127 8.700000e-50 209.0
25 TraesCS7D01G382500 chr7B 85.124 121 12 6 2186 2304 443312227 443312343 1.510000e-22 119.0
26 TraesCS7D01G382500 chr7B 89.773 88 6 1 5608 5695 524718847 524718931 9.080000e-20 110.0
27 TraesCS7D01G382500 chr7B 100.000 45 0 0 5273 5317 524615325 524615369 5.500000e-12 84.2
28 TraesCS7D01G382500 chr7B 100.000 39 0 0 3262 3300 524615325 524615363 1.190000e-08 73.1
29 TraesCS7D01G382500 chr7B 81.111 90 15 2 5710 5799 524718874 524718961 4.280000e-08 71.3
30 TraesCS7D01G382500 chr6D 91.106 2395 152 27 2921 5272 322585384 322583008 0.000000e+00 3186.0
31 TraesCS7D01G382500 chr6D 97.361 341 9 0 2921 3261 20184237 20183897 1.600000e-161 580.0
32 TraesCS7D01G382500 chr6D 96.605 324 11 0 4949 5272 20199254 20198931 9.770000e-149 538.0
33 TraesCS7D01G382500 chr6D 93.275 342 22 1 2921 3261 322583349 322583008 3.560000e-138 503.0
34 TraesCS7D01G382500 chrUn 95.081 1972 87 6 3305 5272 26910866 26908901 0.000000e+00 3096.0
35 TraesCS7D01G382500 chr5D 95.013 1965 92 4 3310 5272 387112001 387110041 0.000000e+00 3081.0
36 TraesCS7D01G382500 chr5D 90.334 2307 166 24 2987 5272 371789235 371791505 0.000000e+00 2972.0
37 TraesCS7D01G382500 chr5D 92.182 1842 106 22 2915 4727 414096737 414094905 0.000000e+00 2569.0
38 TraesCS7D01G382500 chr5D 95.894 341 12 1 2921 3261 414072989 414072651 1.260000e-152 551.0
39 TraesCS7D01G382500 chr5D 96.605 324 11 0 4949 5272 387112397 387112074 9.770000e-149 538.0
40 TraesCS7D01G382500 chr5D 79.795 292 51 6 2423 2710 54720200 54719913 1.130000e-48 206.0
41 TraesCS7D01G382500 chr5D 79.545 220 31 11 292 501 460749931 460749716 2.490000e-30 145.0
42 TraesCS7D01G382500 chr5D 92.000 50 2 2 292 340 197692457 197692409 1.540000e-07 69.4
43 TraesCS7D01G382500 chr3D 94.199 1948 88 5 3343 5272 424341613 424339673 0.000000e+00 2948.0
44 TraesCS7D01G382500 chr3D 96.774 341 11 0 2921 3261 424340013 424339673 3.470000e-158 569.0
45 TraesCS7D01G382500 chr3D 97.222 324 9 0 4949 5272 424341967 424341644 4.510000e-152 549.0
46 TraesCS7D01G382500 chr3D 78.744 207 28 10 292 494 357805040 357804846 3.240000e-24 124.0
47 TraesCS7D01G382500 chr3D 78.616 159 25 7 302 452 481208911 481209068 7.070000e-16 97.1
48 TraesCS7D01G382500 chr4D 89.688 2337 184 32 2987 5275 455184140 455186467 0.000000e+00 2928.0
49 TraesCS7D01G382500 chr4D 84.915 590 62 21 2922 3507 57480567 57481133 9.630000e-159 571.0
50 TraesCS7D01G382500 chr4D 94.428 341 16 1 2921 3261 57483300 57483637 9.840000e-144 521.0
51 TraesCS7D01G382500 chr4D 80.921 152 19 8 287 430 114191542 114191393 2.520000e-20 111.0
52 TraesCS7D01G382500 chr2D 94.486 1868 70 10 3407 5273 421781071 421782906 0.000000e+00 2848.0
53 TraesCS7D01G382500 chr2D 91.899 1864 129 18 3305 5156 349731385 349729532 0.000000e+00 2586.0
54 TraesCS7D01G382500 chr2D 92.593 513 25 3 8051 8555 391717871 391718378 0.000000e+00 725.0
55 TraesCS7D01G382500 chr2D 87.654 81 8 1 292 370 203524232 203524312 9.140000e-15 93.5
56 TraesCS7D01G382500 chr2D 100.000 29 0 0 5879 5907 630005991 630006019 4.000000e-03 54.7
57 TraesCS7D01G382500 chr7A 93.114 1946 87 22 603 2535 561799000 561800911 0.000000e+00 2808.0
58 TraesCS7D01G382500 chr7A 91.813 1991 133 15 3305 5270 269963177 269961192 0.000000e+00 2747.0
59 TraesCS7D01G382500 chr7A 92.681 1421 63 11 6513 7904 561802495 561803903 0.000000e+00 2010.0
60 TraesCS7D01G382500 chr7A 92.243 838 49 8 5635 6469 561801670 561802494 0.000000e+00 1173.0
61 TraesCS7D01G382500 chr7A 96.421 475 14 2 5273 5747 561801236 561801707 0.000000e+00 780.0
62 TraesCS7D01G382500 chr7A 84.137 643 78 16 1562 2200 561880014 561880636 1.230000e-167 601.0
63 TraesCS7D01G382500 chr7A 86.996 446 33 11 102 524 561787613 561788056 6.010000e-131 479.0
64 TraesCS7D01G382500 chr7A 90.751 346 20 1 2577 2922 561800908 561801241 1.310000e-122 451.0
65 TraesCS7D01G382500 chr7A 83.184 446 55 9 7099 7533 561881534 561881970 2.900000e-104 390.0
66 TraesCS7D01G382500 chr7A 77.459 488 74 22 2426 2908 722828753 722828297 8.520000e-65 259.0
67 TraesCS7D01G382500 chr7A 86.036 222 30 1 2426 2646 116530615 116530836 3.990000e-58 237.0
68 TraesCS7D01G382500 chr7A 85.455 165 21 3 2425 2587 202162629 202162466 1.480000e-37 169.0
69 TraesCS7D01G382500 chr7A 95.455 88 4 0 5608 5695 561880666 561880753 3.220000e-29 141.0
70 TraesCS7D01G382500 chr7A 91.209 91 8 0 2214 2304 290922108 290922198 3.240000e-24 124.0
71 TraesCS7D01G382500 chr7A 85.106 94 11 2 5710 5801 561880693 561880785 9.140000e-15 93.5
72 TraesCS7D01G382500 chr7A 97.826 46 1 0 5636 5681 561801742 561801787 7.120000e-11 80.5
73 TraesCS7D01G382500 chr7A 95.745 47 2 0 5710 5756 561801595 561801641 9.210000e-10 76.8
74 TraesCS7D01G382500 chr7A 97.436 39 1 0 3262 3300 561801236 561801274 5.540000e-07 67.6
75 TraesCS7D01G382500 chr7A 94.595 37 2 0 5868 5904 589024825 589024789 3.340000e-04 58.4
76 TraesCS7D01G382500 chr2B 87.091 550 45 16 8027 8555 587231293 587230749 4.420000e-167 599.0
77 TraesCS7D01G382500 chr2B 86.004 543 45 14 8031 8555 67033060 67032531 3.490000e-153 553.0
78 TraesCS7D01G382500 chr2B 94.937 79 4 0 2229 2307 166470900 166470822 3.240000e-24 124.0
79 TraesCS7D01G382500 chr3B 86.799 553 47 13 8025 8555 515251674 515251126 2.060000e-165 593.0
80 TraesCS7D01G382500 chr3B 86.556 543 53 7 8031 8555 506729253 506728713 1.600000e-161 580.0
81 TraesCS7D01G382500 chr3B 86.556 543 48 14 8031 8555 689992896 689993431 7.450000e-160 575.0
82 TraesCS7D01G382500 chr3B 84.307 548 56 12 8028 8555 98017974 98018511 7.660000e-140 508.0
83 TraesCS7D01G382500 chr3B 81.159 138 11 7 91 216 117574917 117574783 7.070000e-16 97.1
84 TraesCS7D01G382500 chr4A 86.581 544 52 9 8031 8555 658409559 658409018 1.600000e-161 580.0
85 TraesCS7D01G382500 chr4A 83.582 201 28 3 2668 2863 609632903 609633103 5.270000e-42 183.0
86 TraesCS7D01G382500 chr4A 80.556 216 31 9 289 495 568617756 568617543 1.150000e-33 156.0
87 TraesCS7D01G382500 chr4A 91.111 90 8 0 2209 2298 405575736 405575825 1.170000e-23 122.0
88 TraesCS7D01G382500 chr4A 88.506 87 7 2 287 370 462830260 462830346 1.520000e-17 102.0
89 TraesCS7D01G382500 chr5B 86.106 547 51 15 8027 8555 592799 592260 4.480000e-157 566.0
90 TraesCS7D01G382500 chr5B 80.952 483 86 6 2425 2903 594756134 594755654 2.250000e-100 377.0
91 TraesCS7D01G382500 chr5B 77.019 322 50 18 2425 2738 550150006 550149701 6.870000e-36 163.0
92 TraesCS7D01G382500 chr5B 80.097 206 33 6 292 490 566678410 566678206 6.920000e-31 147.0
93 TraesCS7D01G382500 chr2A 83.582 201 28 3 2668 2863 475931512 475931312 5.270000e-42 183.0
94 TraesCS7D01G382500 chr2A 83.085 201 29 3 2668 2863 718725340 718725540 2.450000e-40 178.0
95 TraesCS7D01G382500 chr2A 87.037 54 4 3 5857 5907 775189998 775189945 3.340000e-04 58.4
96 TraesCS7D01G382500 chr1A 83.582 201 28 3 2668 2863 550303062 550302862 5.270000e-42 183.0
97 TraesCS7D01G382500 chr1A 81.915 188 29 5 2435 2618 6625929 6626115 4.140000e-33 154.0
98 TraesCS7D01G382500 chr1A 77.778 207 30 8 292 491 576884323 576884520 7.020000e-21 113.0
99 TraesCS7D01G382500 chr1A 84.043 94 13 2 390 482 447622589 447622497 1.180000e-13 89.8
100 TraesCS7D01G382500 chr1B 80.930 215 39 2 2417 2630 563440456 563440669 1.480000e-37 169.0
101 TraesCS7D01G382500 chr5A 78.802 217 35 9 295 501 580938434 580938219 1.500000e-27 135.0
102 TraesCS7D01G382500 chr4B 89.583 96 10 0 2212 2307 206800073 206799978 1.170000e-23 122.0
103 TraesCS7D01G382500 chr6B 90.698 43 3 1 5866 5907 30075530 30075572 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G382500 chr7D 496152697 496161251 8554 False 5317.533333 15799 97.163333 1 8555 3 chr7D.!!$F3 8554
1 TraesCS7D01G382500 chr7D 350139280 350141650 2370 False 3265.000000 3265 91.736000 2919 5272 1 chr7D.!!$F2 2353
2 TraesCS7D01G382500 chr7D 90626145 90628005 1860 True 2667.000000 2667 92.601000 3305 5160 1 chr7D.!!$R1 1855
3 TraesCS7D01G382500 chr7D 403099103 403099635 532 True 806.000000 806 94.074000 8025 8555 1 chr7D.!!$R3 530
4 TraesCS7D01G382500 chr7D 566013077 566013606 529 True 758.000000 758 92.565000 8026 8555 1 chr7D.!!$R4 529
5 TraesCS7D01G382500 chr7D 496365790 496367596 1806 False 560.000000 641 86.186500 1562 7533 2 chr7D.!!$F4 5971
6 TraesCS7D01G382500 chr7D 582122692 582123273 581 True 392.000000 392 80.617000 8030 8550 1 chr7D.!!$R5 520
7 TraesCS7D01G382500 chr1D 412083935 412086282 2347 False 3458.000000 3458 93.322000 2922 5272 1 chr1D.!!$F3 2350
8 TraesCS7D01G382500 chr1D 408563354 408563887 533 False 800.000000 800 93.878000 8026 8555 1 chr1D.!!$F2 529
9 TraesCS7D01G382500 chr7B 524612958 524621976 9018 False 1125.614286 3454 95.512286 599 7903 7 chr7B.!!$F3 7304
10 TraesCS7D01G382500 chr7B 524718847 524720135 1288 False 211.433333 453 85.554667 5608 7533 3 chr7B.!!$F4 1925
11 TraesCS7D01G382500 chr6D 322583008 322585384 2376 True 1844.500000 3186 92.190500 2921 5272 2 chr6D.!!$R3 2351
12 TraesCS7D01G382500 chrUn 26908901 26910866 1965 True 3096.000000 3096 95.081000 3305 5272 1 chrUn.!!$R1 1967
13 TraesCS7D01G382500 chr5D 371789235 371791505 2270 False 2972.000000 2972 90.334000 2987 5272 1 chr5D.!!$F1 2285
14 TraesCS7D01G382500 chr5D 414094905 414096737 1832 True 2569.000000 2569 92.182000 2915 4727 1 chr5D.!!$R4 1812
15 TraesCS7D01G382500 chr5D 387110041 387112397 2356 True 1809.500000 3081 95.809000 3310 5272 2 chr5D.!!$R6 1962
16 TraesCS7D01G382500 chr3D 424339673 424341967 2294 True 1355.333333 2948 96.065000 2921 5272 3 chr3D.!!$R2 2351
17 TraesCS7D01G382500 chr4D 455184140 455186467 2327 False 2928.000000 2928 89.688000 2987 5275 1 chr4D.!!$F1 2288
18 TraesCS7D01G382500 chr4D 57480567 57483637 3070 False 546.000000 571 89.671500 2921 3507 2 chr4D.!!$F2 586
19 TraesCS7D01G382500 chr2D 421781071 421782906 1835 False 2848.000000 2848 94.486000 3407 5273 1 chr2D.!!$F3 1866
20 TraesCS7D01G382500 chr2D 349729532 349731385 1853 True 2586.000000 2586 91.899000 3305 5156 1 chr2D.!!$R1 1851
21 TraesCS7D01G382500 chr2D 391717871 391718378 507 False 725.000000 725 92.593000 8051 8555 1 chr2D.!!$F2 504
22 TraesCS7D01G382500 chr7A 269961192 269963177 1985 True 2747.000000 2747 91.813000 3305 5270 1 chr7A.!!$R2 1965
23 TraesCS7D01G382500 chr7A 561799000 561803903 4903 False 930.862500 2808 94.527125 603 7904 8 chr7A.!!$F4 7301
24 TraesCS7D01G382500 chr7A 561880014 561881970 1956 False 306.375000 601 86.970500 1562 7533 4 chr7A.!!$F5 5971
25 TraesCS7D01G382500 chr2B 587230749 587231293 544 True 599.000000 599 87.091000 8027 8555 1 chr2B.!!$R3 528
26 TraesCS7D01G382500 chr2B 67032531 67033060 529 True 553.000000 553 86.004000 8031 8555 1 chr2B.!!$R1 524
27 TraesCS7D01G382500 chr3B 515251126 515251674 548 True 593.000000 593 86.799000 8025 8555 1 chr3B.!!$R3 530
28 TraesCS7D01G382500 chr3B 506728713 506729253 540 True 580.000000 580 86.556000 8031 8555 1 chr3B.!!$R2 524
29 TraesCS7D01G382500 chr3B 689992896 689993431 535 False 575.000000 575 86.556000 8031 8555 1 chr3B.!!$F2 524
30 TraesCS7D01G382500 chr3B 98017974 98018511 537 False 508.000000 508 84.307000 8028 8555 1 chr3B.!!$F1 527
31 TraesCS7D01G382500 chr4A 658409018 658409559 541 True 580.000000 580 86.581000 8031 8555 1 chr4A.!!$R2 524
32 TraesCS7D01G382500 chr5B 592260 592799 539 True 566.000000 566 86.106000 8027 8555 1 chr5B.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
880 924 0.320421 CGAAGACGGGGAGCAGAAAA 60.320 55.000 0.00 0.0 35.72 2.29 F
2215 2297 1.072505 CTACCACCACCACCACCAC 59.927 63.158 0.00 0.0 0.00 4.16 F
3272 3376 0.463654 TTCTACCATGCCGTCATGCC 60.464 55.000 0.00 0.0 46.69 4.40 F
4258 5151 0.666913 GTATTACGCCCTCGAGCAGA 59.333 55.000 6.99 0.0 39.41 4.26 F
4520 5413 0.104725 GGACCCCAGGATCTCCAGAT 60.105 60.000 0.00 0.0 38.89 2.90 F
5483 6569 0.321671 ACGTACATTGACTGCTGCCT 59.678 50.000 0.00 0.0 0.00 4.75 F
6371 9913 0.676466 CTGCTGGTCCGCATTTGGTA 60.676 55.000 8.52 0.0 39.52 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2218 2300 0.174617 GTTGTTGTTGGTGGTGGTGG 59.825 55.000 0.00 0.00 0.00 4.61 R
3842 4728 0.250081 GACTTGATGGATCGGGAGGC 60.250 60.000 0.00 0.00 0.00 4.70 R
4486 5379 1.218316 GTCCCCTAAGCTCCACGTG 59.782 63.158 9.08 9.08 0.00 4.49 R
5887 7267 1.022903 ATAAAAATGGGGCAGGGGGA 58.977 50.000 0.00 0.00 0.00 4.81 R
6092 9622 1.207570 CAGCAGGCTTCTCAGTCTCAT 59.792 52.381 0.00 0.00 29.90 2.90 R
7000 10555 1.123077 TACATGCTAGAGTGGCCTGG 58.877 55.000 3.32 0.00 31.38 4.45 R
7911 13281 0.036388 AATGTTGTCCTCGGCGTCAT 60.036 50.000 6.85 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.430441 TCTAGCACATTTTAAAAACCTCAACC 58.570 34.615 4.44 0.00 0.00 3.77
59 60 5.983540 AGCACATTTTAAAAACCTCAACCA 58.016 33.333 4.44 0.00 0.00 3.67
61 62 6.881602 AGCACATTTTAAAAACCTCAACCAAA 59.118 30.769 4.44 0.00 0.00 3.28
62 63 7.391833 AGCACATTTTAAAAACCTCAACCAAAA 59.608 29.630 4.44 0.00 0.00 2.44
63 64 8.187480 GCACATTTTAAAAACCTCAACCAAAAT 58.813 29.630 4.44 0.00 0.00 1.82
95 96 9.383519 TGACAAAAGATGAAGATCTACAATACC 57.616 33.333 0.00 0.00 38.03 2.73
96 97 9.383519 GACAAAAGATGAAGATCTACAATACCA 57.616 33.333 0.00 0.00 38.03 3.25
99 100 9.965902 AAAAGATGAAGATCTACAATACCAAGT 57.034 29.630 0.00 0.00 38.03 3.16
101 102 8.954950 AGATGAAGATCTACAATACCAAGTTG 57.045 34.615 0.00 0.00 37.15 3.16
102 103 8.543774 AGATGAAGATCTACAATACCAAGTTGT 58.456 33.333 0.00 0.00 42.12 3.32
103 104 9.817809 GATGAAGATCTACAATACCAAGTTGTA 57.182 33.333 0.00 0.00 40.13 2.41
203 204 8.578308 TCAAACTTTATGAAATTTGACTGCAG 57.422 30.769 13.48 13.48 36.42 4.41
204 205 8.412456 TCAAACTTTATGAAATTTGACTGCAGA 58.588 29.630 23.35 0.00 36.42 4.26
205 206 8.482429 CAAACTTTATGAAATTTGACTGCAGAC 58.518 33.333 23.35 15.92 34.62 3.51
206 207 7.275888 ACTTTATGAAATTTGACTGCAGACA 57.724 32.000 23.35 18.86 0.00 3.41
207 208 7.715657 ACTTTATGAAATTTGACTGCAGACAA 58.284 30.769 24.48 24.48 0.00 3.18
208 209 8.196771 ACTTTATGAAATTTGACTGCAGACAAA 58.803 29.630 34.76 34.76 41.98 2.83
209 210 9.199982 CTTTATGAAATTTGACTGCAGACAAAT 57.800 29.630 35.60 35.60 46.52 2.32
255 256 9.483489 TGAATAGAGGGAGTACATTACTAAACA 57.517 33.333 0.00 0.00 39.59 2.83
260 261 9.435570 AGAGGGAGTACATTACTAAACATATGT 57.564 33.333 1.41 1.41 39.59 2.29
263 264 9.826574 GGGAGTACATTACTAAACATATGTTCA 57.173 33.333 21.02 6.40 39.59 3.18
269 270 9.944376 ACATTACTAAACATATGTTCAGTCAGT 57.056 29.630 24.66 18.38 37.64 3.41
271 272 6.727824 ACTAAACATATGTTCAGTCAGTGC 57.272 37.500 21.02 0.00 31.03 4.40
272 273 6.230472 ACTAAACATATGTTCAGTCAGTGCA 58.770 36.000 21.02 0.00 31.03 4.57
273 274 5.362556 AAACATATGTTCAGTCAGTGCAC 57.637 39.130 21.02 9.40 37.25 4.57
274 275 2.995939 ACATATGTTCAGTCAGTGCACG 59.004 45.455 12.01 6.78 0.00 5.34
275 276 3.253230 CATATGTTCAGTCAGTGCACGA 58.747 45.455 12.01 9.23 0.00 4.35
276 277 1.788258 ATGTTCAGTCAGTGCACGAG 58.212 50.000 12.01 8.66 0.00 4.18
277 278 0.459899 TGTTCAGTCAGTGCACGAGT 59.540 50.000 12.01 11.75 0.00 4.18
278 279 0.855349 GTTCAGTCAGTGCACGAGTG 59.145 55.000 26.68 26.68 35.52 3.51
279 280 0.744281 TTCAGTCAGTGCACGAGTGA 59.256 50.000 29.05 29.05 40.29 3.41
280 281 0.961753 TCAGTCAGTGCACGAGTGAT 59.038 50.000 29.05 11.73 37.80 3.06
281 282 1.341209 TCAGTCAGTGCACGAGTGATT 59.659 47.619 29.05 16.75 37.80 2.57
282 283 2.138320 CAGTCAGTGCACGAGTGATTT 58.862 47.619 27.72 12.17 36.38 2.17
283 284 2.545526 CAGTCAGTGCACGAGTGATTTT 59.454 45.455 27.72 10.31 36.38 1.82
284 285 3.002656 CAGTCAGTGCACGAGTGATTTTT 59.997 43.478 27.72 8.47 36.38 1.94
285 286 3.248602 AGTCAGTGCACGAGTGATTTTTC 59.751 43.478 12.01 0.00 36.38 2.29
286 287 3.002246 GTCAGTGCACGAGTGATTTTTCA 59.998 43.478 12.01 0.00 36.38 2.69
287 288 3.814842 TCAGTGCACGAGTGATTTTTCAT 59.185 39.130 12.01 0.00 0.00 2.57
288 289 4.275689 TCAGTGCACGAGTGATTTTTCATT 59.724 37.500 12.01 0.00 0.00 2.57
289 290 4.977963 CAGTGCACGAGTGATTTTTCATTT 59.022 37.500 12.01 0.00 0.00 2.32
290 291 6.017523 TCAGTGCACGAGTGATTTTTCATTTA 60.018 34.615 12.01 0.00 0.00 1.40
291 292 6.803320 CAGTGCACGAGTGATTTTTCATTTAT 59.197 34.615 12.01 0.00 0.00 1.40
292 293 7.962373 CAGTGCACGAGTGATTTTTCATTTATA 59.038 33.333 12.01 0.00 0.00 0.98
293 294 7.962918 AGTGCACGAGTGATTTTTCATTTATAC 59.037 33.333 12.01 0.00 0.00 1.47
294 295 7.962918 GTGCACGAGTGATTTTTCATTTATACT 59.037 33.333 0.00 0.00 0.00 2.12
295 296 9.157104 TGCACGAGTGATTTTTCATTTATACTA 57.843 29.630 7.50 0.00 0.00 1.82
296 297 9.422196 GCACGAGTGATTTTTCATTTATACTAC 57.578 33.333 7.50 0.00 0.00 2.73
297 298 9.916397 CACGAGTGATTTTTCATTTATACTACC 57.084 33.333 0.00 0.00 0.00 3.18
298 299 9.886132 ACGAGTGATTTTTCATTTATACTACCT 57.114 29.630 0.00 0.00 0.00 3.08
306 307 8.712285 TTTTCATTTATACTACCTTCGTCTGG 57.288 34.615 0.00 0.00 0.00 3.86
307 308 6.401047 TCATTTATACTACCTTCGTCTGGG 57.599 41.667 0.00 0.00 0.00 4.45
308 309 5.895534 TCATTTATACTACCTTCGTCTGGGT 59.104 40.000 0.00 0.00 39.40 4.51
309 310 6.381994 TCATTTATACTACCTTCGTCTGGGTT 59.618 38.462 0.00 0.00 37.07 4.11
310 311 6.610075 TTTATACTACCTTCGTCTGGGTTT 57.390 37.500 0.00 0.00 37.07 3.27
311 312 7.716799 TTTATACTACCTTCGTCTGGGTTTA 57.283 36.000 0.00 0.00 37.07 2.01
312 313 7.902920 TTATACTACCTTCGTCTGGGTTTAT 57.097 36.000 0.00 0.00 37.07 1.40
313 314 6.803366 ATACTACCTTCGTCTGGGTTTATT 57.197 37.500 0.00 0.00 37.07 1.40
314 315 7.902920 ATACTACCTTCGTCTGGGTTTATTA 57.097 36.000 0.00 0.00 37.07 0.98
315 316 6.218108 ACTACCTTCGTCTGGGTTTATTAG 57.782 41.667 0.00 0.00 37.07 1.73
316 317 5.718607 ACTACCTTCGTCTGGGTTTATTAGT 59.281 40.000 0.00 0.00 37.07 2.24
317 318 5.082251 ACCTTCGTCTGGGTTTATTAGTC 57.918 43.478 0.00 0.00 30.80 2.59
318 319 4.081254 ACCTTCGTCTGGGTTTATTAGTCC 60.081 45.833 0.00 0.00 30.80 3.85
319 320 4.439968 CTTCGTCTGGGTTTATTAGTCCC 58.560 47.826 0.00 0.00 41.41 4.46
320 321 2.767960 TCGTCTGGGTTTATTAGTCCCC 59.232 50.000 0.00 0.00 40.41 4.81
321 322 2.502538 CGTCTGGGTTTATTAGTCCCCA 59.497 50.000 0.00 0.00 44.84 4.96
322 323 3.135895 CGTCTGGGTTTATTAGTCCCCAT 59.864 47.826 0.00 0.00 45.83 4.00
323 324 4.715713 GTCTGGGTTTATTAGTCCCCATC 58.284 47.826 0.00 0.00 45.83 3.51
324 325 3.389983 TCTGGGTTTATTAGTCCCCATCG 59.610 47.826 0.00 0.00 45.83 3.84
325 326 3.116959 TGGGTTTATTAGTCCCCATCGT 58.883 45.455 0.00 0.00 42.21 3.73
326 327 4.296912 TGGGTTTATTAGTCCCCATCGTA 58.703 43.478 0.00 0.00 42.21 3.43
327 328 4.909088 TGGGTTTATTAGTCCCCATCGTAT 59.091 41.667 0.00 0.00 42.21 3.06
328 329 5.370289 TGGGTTTATTAGTCCCCATCGTATT 59.630 40.000 0.00 0.00 42.21 1.89
329 330 6.126420 TGGGTTTATTAGTCCCCATCGTATTT 60.126 38.462 0.00 0.00 42.21 1.40
330 331 6.774170 GGGTTTATTAGTCCCCATCGTATTTT 59.226 38.462 0.00 0.00 37.09 1.82
331 332 7.255346 GGGTTTATTAGTCCCCATCGTATTTTG 60.255 40.741 0.00 0.00 37.09 2.44
332 333 7.255346 GGTTTATTAGTCCCCATCGTATTTTGG 60.255 40.741 0.00 0.00 0.00 3.28
339 340 4.370364 CCCATCGTATTTTGGGTCAAAG 57.630 45.455 0.00 0.00 46.38 2.77
340 341 4.013728 CCCATCGTATTTTGGGTCAAAGA 58.986 43.478 0.00 0.00 46.38 2.52
341 342 4.644685 CCCATCGTATTTTGGGTCAAAGAT 59.355 41.667 0.00 0.00 46.38 2.40
342 343 5.825679 CCCATCGTATTTTGGGTCAAAGATA 59.174 40.000 0.00 0.00 46.38 1.98
343 344 6.238648 CCCATCGTATTTTGGGTCAAAGATAC 60.239 42.308 0.00 0.00 46.38 2.24
344 345 6.238648 CCATCGTATTTTGGGTCAAAGATACC 60.239 42.308 13.41 0.00 34.72 2.73
345 346 5.806818 TCGTATTTTGGGTCAAAGATACCA 58.193 37.500 0.00 0.00 38.87 3.25
346 347 5.644636 TCGTATTTTGGGTCAAAGATACCAC 59.355 40.000 0.00 0.00 38.87 4.16
347 348 5.413213 CGTATTTTGGGTCAAAGATACCACA 59.587 40.000 0.00 0.00 38.87 4.17
348 349 6.094881 CGTATTTTGGGTCAAAGATACCACAT 59.905 38.462 0.00 0.00 38.87 3.21
349 350 7.281324 CGTATTTTGGGTCAAAGATACCACATA 59.719 37.037 0.00 0.00 38.87 2.29
350 351 9.131791 GTATTTTGGGTCAAAGATACCACATAT 57.868 33.333 0.00 0.00 38.87 1.78
351 352 8.608185 ATTTTGGGTCAAAGATACCACATATT 57.392 30.769 0.00 0.00 38.87 1.28
352 353 8.429237 TTTTGGGTCAAAGATACCACATATTT 57.571 30.769 0.00 0.00 38.87 1.40
353 354 7.403312 TTGGGTCAAAGATACCACATATTTG 57.597 36.000 0.00 0.00 38.87 2.32
354 355 6.726379 TGGGTCAAAGATACCACATATTTGA 58.274 36.000 3.60 3.60 38.87 2.69
360 361 9.072375 TCAAAGATACCACATATTTGACAAACA 57.928 29.630 1.94 0.00 35.23 2.83
361 362 9.689976 CAAAGATACCACATATTTGACAAACAA 57.310 29.630 1.94 0.00 33.48 2.83
375 376 6.618770 TGACAAACAAAATGTTAACACACG 57.381 33.333 11.22 2.63 40.14 4.49
376 377 6.150318 TGACAAACAAAATGTTAACACACGT 58.850 32.000 11.22 3.28 40.14 4.49
377 378 6.641314 TGACAAACAAAATGTTAACACACGTT 59.359 30.769 11.22 9.25 40.14 3.99
378 379 7.806487 TGACAAACAAAATGTTAACACACGTTA 59.194 29.630 11.22 0.00 40.14 3.18
379 380 8.690680 ACAAACAAAATGTTAACACACGTTAT 57.309 26.923 11.22 2.54 40.14 1.89
380 381 9.784680 ACAAACAAAATGTTAACACACGTTATA 57.215 25.926 11.22 0.00 40.14 0.98
409 410 9.612066 AAACTTGTTGGATTTGTATTTGAATGT 57.388 25.926 0.00 0.00 0.00 2.71
411 412 9.691362 ACTTGTTGGATTTGTATTTGAATGTAC 57.309 29.630 0.00 0.00 0.00 2.90
412 413 9.912634 CTTGTTGGATTTGTATTTGAATGTACT 57.087 29.630 0.00 0.00 0.00 2.73
506 507 7.761038 CCAAAATACAGGGACTAGTTTCTTT 57.239 36.000 0.00 0.00 36.02 2.52
507 508 8.857694 CCAAAATACAGGGACTAGTTTCTTTA 57.142 34.615 0.00 0.00 36.02 1.85
508 509 8.947115 CCAAAATACAGGGACTAGTTTCTTTAG 58.053 37.037 0.00 0.00 36.02 1.85
509 510 8.947115 CAAAATACAGGGACTAGTTTCTTTAGG 58.053 37.037 0.00 0.00 36.02 2.69
510 511 6.809976 ATACAGGGACTAGTTTCTTTAGGG 57.190 41.667 0.00 0.00 36.02 3.53
511 512 3.844804 ACAGGGACTAGTTTCTTTAGGGG 59.155 47.826 0.00 0.00 36.02 4.79
512 513 3.844804 CAGGGACTAGTTTCTTTAGGGGT 59.155 47.826 0.00 0.00 36.02 4.95
513 514 4.288887 CAGGGACTAGTTTCTTTAGGGGTT 59.711 45.833 0.00 0.00 36.02 4.11
514 515 4.918273 AGGGACTAGTTTCTTTAGGGGTTT 59.082 41.667 0.00 0.00 36.02 3.27
515 516 6.013119 CAGGGACTAGTTTCTTTAGGGGTTTA 60.013 42.308 0.00 0.00 36.02 2.01
516 517 6.013032 AGGGACTAGTTTCTTTAGGGGTTTAC 60.013 42.308 0.00 0.00 36.02 2.01
517 518 6.239973 GGGACTAGTTTCTTTAGGGGTTTACA 60.240 42.308 0.00 0.00 0.00 2.41
518 519 6.877855 GGACTAGTTTCTTTAGGGGTTTACAG 59.122 42.308 0.00 0.00 0.00 2.74
519 520 6.776744 ACTAGTTTCTTTAGGGGTTTACAGG 58.223 40.000 0.00 0.00 0.00 4.00
520 521 5.917545 AGTTTCTTTAGGGGTTTACAGGA 57.082 39.130 0.00 0.00 0.00 3.86
521 522 5.628130 AGTTTCTTTAGGGGTTTACAGGAC 58.372 41.667 0.00 0.00 0.00 3.85
522 523 5.371769 AGTTTCTTTAGGGGTTTACAGGACT 59.628 40.000 0.00 0.00 0.00 3.85
523 524 6.559921 AGTTTCTTTAGGGGTTTACAGGACTA 59.440 38.462 0.00 0.00 0.00 2.59
524 525 6.616237 TTCTTTAGGGGTTTACAGGACTAG 57.384 41.667 0.00 0.00 0.00 2.57
525 526 5.907421 TCTTTAGGGGTTTACAGGACTAGA 58.093 41.667 0.00 0.00 0.00 2.43
526 527 6.509386 TCTTTAGGGGTTTACAGGACTAGAT 58.491 40.000 0.00 0.00 0.00 1.98
527 528 6.964086 TCTTTAGGGGTTTACAGGACTAGATT 59.036 38.462 0.00 0.00 0.00 2.40
528 529 7.460082 TCTTTAGGGGTTTACAGGACTAGATTT 59.540 37.037 0.00 0.00 0.00 2.17
529 530 7.578458 TTAGGGGTTTACAGGACTAGATTTT 57.422 36.000 0.00 0.00 0.00 1.82
530 531 6.464530 AGGGGTTTACAGGACTAGATTTTT 57.535 37.500 0.00 0.00 0.00 1.94
550 551 2.323999 TTTTGAGGGGTACGGGAGTA 57.676 50.000 0.00 0.00 46.17 2.59
563 564 3.297736 ACGGGAGTAGTAAATGAGGAGG 58.702 50.000 0.00 0.00 44.60 4.30
564 565 2.628657 CGGGAGTAGTAAATGAGGAGGG 59.371 54.545 0.00 0.00 0.00 4.30
565 566 3.690438 CGGGAGTAGTAAATGAGGAGGGA 60.690 52.174 0.00 0.00 0.00 4.20
566 567 4.494591 GGGAGTAGTAAATGAGGAGGGAT 58.505 47.826 0.00 0.00 0.00 3.85
567 568 5.652324 GGGAGTAGTAAATGAGGAGGGATA 58.348 45.833 0.00 0.00 0.00 2.59
568 569 6.265304 GGGAGTAGTAAATGAGGAGGGATAT 58.735 44.000 0.00 0.00 0.00 1.63
569 570 6.731448 GGGAGTAGTAAATGAGGAGGGATATT 59.269 42.308 0.00 0.00 0.00 1.28
570 571 7.237887 GGGAGTAGTAAATGAGGAGGGATATTT 59.762 40.741 0.00 0.00 0.00 1.40
571 572 8.661345 GGAGTAGTAAATGAGGAGGGATATTTT 58.339 37.037 0.00 0.00 0.00 1.82
597 598 4.722526 TTTTGAGACAAATGAGGAGGGA 57.277 40.909 0.00 0.00 0.00 4.20
604 605 6.268617 TGAGACAAATGAGGAGGGATATAGTG 59.731 42.308 0.00 0.00 0.00 2.74
674 675 6.461509 GGCCCACAATTAATCCATCACTTAAG 60.462 42.308 0.00 0.00 0.00 1.85
675 676 6.096846 GCCCACAATTAATCCATCACTTAAGT 59.903 38.462 1.12 1.12 0.00 2.24
745 782 0.743701 AGCAGAGCAGCAGGATTTCG 60.744 55.000 0.00 0.00 36.85 3.46
859 903 5.641636 GGGAAGTAGAGAAGAGAAAGCAAAG 59.358 44.000 0.00 0.00 0.00 2.77
860 904 5.641636 GGAAGTAGAGAAGAGAAAGCAAAGG 59.358 44.000 0.00 0.00 0.00 3.11
876 920 4.821589 GGCGAAGACGGGGAGCAG 62.822 72.222 0.00 0.00 40.15 4.24
877 921 3.760035 GCGAAGACGGGGAGCAGA 61.760 66.667 0.00 0.00 40.15 4.26
878 922 2.970639 CGAAGACGGGGAGCAGAA 59.029 61.111 0.00 0.00 35.72 3.02
879 923 1.292223 CGAAGACGGGGAGCAGAAA 59.708 57.895 0.00 0.00 35.72 2.52
880 924 0.320421 CGAAGACGGGGAGCAGAAAA 60.320 55.000 0.00 0.00 35.72 2.29
911 982 4.162690 GAGGCCATCCGGTTCGCT 62.163 66.667 5.01 0.00 37.47 4.93
1455 1527 3.140814 GATTGGTCCAAGGCCGCC 61.141 66.667 10.72 0.00 0.00 6.13
1489 1561 2.124695 GGGCAGGTTCGGATGACC 60.125 66.667 0.00 0.00 37.46 4.02
1521 1593 2.388232 GGGTAGCGGCGTTCACAAG 61.388 63.158 9.37 0.00 0.00 3.16
1522 1594 2.474712 GTAGCGGCGTTCACAAGC 59.525 61.111 9.37 0.00 0.00 4.01
1527 1599 2.568090 GGCGTTCACAAGCATGGG 59.432 61.111 0.00 0.00 34.54 4.00
1530 1602 1.875963 CGTTCACAAGCATGGGGAC 59.124 57.895 0.00 0.00 34.85 4.46
1755 1827 3.252458 AGAAATTTGCAGTGGGTACGAAC 59.748 43.478 0.00 0.00 0.00 3.95
2040 2121 6.429791 TGTATCACCATGTGTTAATTTCCG 57.570 37.500 0.00 0.00 34.79 4.30
2074 2155 8.591072 ACTTGTATAGCTTGGTACAGAAAACTA 58.409 33.333 0.00 0.00 42.39 2.24
2215 2297 1.072505 CTACCACCACCACCACCAC 59.927 63.158 0.00 0.00 0.00 4.16
2216 2298 2.406002 CTACCACCACCACCACCACC 62.406 65.000 0.00 0.00 0.00 4.61
2217 2299 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2218 2300 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2219 2301 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2220 2302 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2221 2303 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2222 2304 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2223 2305 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2224 2306 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2225 2307 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2226 2308 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2227 2309 2.518349 CACCACCACCACCACCAC 60.518 66.667 0.00 0.00 0.00 4.16
2228 2310 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2229 2311 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2339 2440 1.534235 ACTCGAACCCAGCACCTCT 60.534 57.895 0.00 0.00 0.00 3.69
2353 2454 4.574013 CAGCACCTCTCATTACTTTCATCC 59.426 45.833 0.00 0.00 0.00 3.51
2404 2505 6.903883 TTTCTTTGATATGCTTCTACCGTC 57.096 37.500 0.00 0.00 0.00 4.79
2430 2531 6.813152 GCATAATTTTACTTTGATGCCAGTGT 59.187 34.615 0.00 0.00 34.88 3.55
2535 2637 2.223479 GCATGTAACATAGCCCCAAACG 60.223 50.000 0.00 0.00 0.00 3.60
2537 2639 2.702261 TGTAACATAGCCCCAAACGTC 58.298 47.619 0.00 0.00 0.00 4.34
2538 2640 2.038689 TGTAACATAGCCCCAAACGTCA 59.961 45.455 0.00 0.00 0.00 4.35
2551 2653 3.550030 CCAAACGTCAGAACCACAAATCC 60.550 47.826 0.00 0.00 0.00 3.01
2552 2654 2.631160 ACGTCAGAACCACAAATCCA 57.369 45.000 0.00 0.00 0.00 3.41
2672 2774 7.707104 ACCAAAATAAAGTTGAGACTTGACAG 58.293 34.615 0.00 0.00 45.18 3.51
2704 2806 3.118531 AGAACCAGGCATCCATAGAACT 58.881 45.455 0.00 0.00 0.00 3.01
2725 2827 1.122227 AACTTGCCATGTTGCCAGTT 58.878 45.000 7.36 7.36 41.01 3.16
2737 2839 6.765989 CCATGTTGCCAGTTAAAGTATAGCTA 59.234 38.462 0.00 0.00 0.00 3.32
2739 2841 8.499162 CATGTTGCCAGTTAAAGTATAGCTATC 58.501 37.037 10.16 2.36 0.00 2.08
2767 2869 4.162040 AGCATCCAAACATCCTAGAAGG 57.838 45.455 0.00 0.00 36.46 3.46
2780 2883 6.611642 ACATCCTAGAAGGCACTACAAGATAA 59.388 38.462 0.00 0.00 38.49 1.75
2848 2951 9.102757 TGTGAACATATTCAAATTAGAGAGCTC 57.897 33.333 5.27 5.27 46.40 4.09
2886 2989 6.039941 ACAGTCAGATAGAACATACCACTAGC 59.960 42.308 0.00 0.00 0.00 3.42
2919 3022 1.168407 TCACAGAGCTTGCAAGTGCC 61.168 55.000 26.55 15.69 41.18 5.01
3063 3166 8.568794 GCTGTAAGACTCTTTTTGGAATTAAGT 58.431 33.333 0.00 0.00 34.07 2.24
3098 3201 4.626081 CCCTATTGCCCGGCTCCG 62.626 72.222 11.61 0.48 39.44 4.63
3159 3263 3.917760 GCCATCTCCCTCCGACGG 61.918 72.222 7.84 7.84 0.00 4.79
3161 3265 3.917760 CATCTCCCTCCGACGGGC 61.918 72.222 15.25 0.00 44.30 6.13
3270 3374 1.406751 TGGTTCTACCATGCCGTCATG 60.407 52.381 0.00 0.00 44.79 3.07
3272 3376 0.463654 TTCTACCATGCCGTCATGCC 60.464 55.000 0.00 0.00 46.69 4.40
3276 3380 2.404789 CATGCCGTCATGCCGAAC 59.595 61.111 0.00 0.00 43.00 3.95
3277 3381 2.046411 ATGCCGTCATGCCGAACA 60.046 55.556 0.00 0.00 0.00 3.18
3278 3382 2.108514 ATGCCGTCATGCCGAACAG 61.109 57.895 0.00 0.00 0.00 3.16
3279 3383 3.499737 GCCGTCATGCCGAACAGG 61.500 66.667 0.00 0.00 44.97 4.00
3289 3393 1.669115 CCGAACAGGGCTGTGACTG 60.669 63.158 0.00 0.00 44.13 3.51
3290 3394 2.320587 CGAACAGGGCTGTGACTGC 61.321 63.158 5.85 5.85 44.13 4.40
3292 3396 0.952984 GAACAGGGCTGTGACTGCTC 60.953 60.000 14.04 10.41 44.13 4.26
3293 3397 2.433838 CAGGGCTGTGACTGCTCG 60.434 66.667 14.04 3.43 33.97 5.03
3294 3398 2.919856 AGGGCTGTGACTGCTCGT 60.920 61.111 14.04 3.81 33.97 4.18
3297 3401 1.595382 GGCTGTGACTGCTCGTGTT 60.595 57.895 14.04 0.00 0.00 3.32
3298 3402 1.560860 GGCTGTGACTGCTCGTGTTC 61.561 60.000 14.04 0.00 0.00 3.18
3299 3403 1.560860 GCTGTGACTGCTCGTGTTCC 61.561 60.000 7.23 0.00 0.00 3.62
3301 3405 1.668151 GTGACTGCTCGTGTTCCCC 60.668 63.158 0.00 0.00 0.00 4.81
3303 3407 1.374758 GACTGCTCGTGTTCCCCTG 60.375 63.158 0.00 0.00 0.00 4.45
3305 3409 3.535629 CTGCTCGTGTTCCCCTGCA 62.536 63.158 0.00 0.00 0.00 4.41
3310 3414 2.597510 GTGTTCCCCTGCACCACC 60.598 66.667 0.00 0.00 0.00 4.61
3311 3415 4.263572 TGTTCCCCTGCACCACCG 62.264 66.667 0.00 0.00 0.00 4.94
4160 5053 1.750682 GCTCAACCAGGTTGACCAGTT 60.751 52.381 28.47 3.14 45.88 3.16
4258 5151 0.666913 GTATTACGCCCTCGAGCAGA 59.333 55.000 6.99 0.00 39.41 4.26
4520 5413 0.104725 GGACCCCAGGATCTCCAGAT 60.105 60.000 0.00 0.00 38.89 2.90
5140 6097 2.685380 CCCAGAGGAGCCGGAACT 60.685 66.667 5.05 0.00 33.47 3.01
5483 6569 0.321671 ACGTACATTGACTGCTGCCT 59.678 50.000 0.00 0.00 0.00 4.75
5817 7197 4.256920 AGTCTTTGTGCAGGTATGTGATC 58.743 43.478 0.00 0.00 0.00 2.92
5826 7206 3.999663 GCAGGTATGTGATCCTAATGCTC 59.000 47.826 0.00 0.00 32.26 4.26
6048 9578 8.912988 CCTAGACTTCTCTCTCTTCACATATTT 58.087 37.037 0.00 0.00 0.00 1.40
6092 9622 2.159156 CGTCGTATGTGAGGGGATTTGA 60.159 50.000 0.00 0.00 0.00 2.69
6106 9636 3.876320 GGGATTTGATGAGACTGAGAAGC 59.124 47.826 0.00 0.00 0.00 3.86
6159 9689 6.600388 ACTATACATCATGCAACCATTGGTA 58.400 36.000 9.20 0.00 33.12 3.25
6206 9738 6.838090 ACTCCTTGACATCTGATAGAGATTGA 59.162 38.462 0.00 0.00 39.64 2.57
6257 9796 5.758790 ATATACTGCTCTCCTGAATGCAT 57.241 39.130 0.00 0.00 34.79 3.96
6371 9913 0.676466 CTGCTGGTCCGCATTTGGTA 60.676 55.000 8.52 0.00 39.52 3.25
6373 9915 0.885196 GCTGGTCCGCATTTGGTAAA 59.115 50.000 1.46 0.00 0.00 2.01
6440 9982 7.381948 TCAACTTTGAATTGACATTTTGGATCG 59.618 33.333 0.00 0.00 33.55 3.69
6457 9999 3.804873 GGATCGTTGATCTTTCTACTGCC 59.195 47.826 6.74 0.00 38.91 4.85
6488 10030 4.890158 TTTGAGCTGGAACATCTACTCA 57.110 40.909 0.00 0.00 33.65 3.41
6489 10031 4.890158 TTGAGCTGGAACATCTACTCAA 57.110 40.909 0.00 0.00 39.65 3.02
6490 10032 4.462508 TGAGCTGGAACATCTACTCAAG 57.537 45.455 0.00 0.00 33.65 3.02
6731 10278 4.519350 GCTTTTGCTTGTTAGGTTCTAGGT 59.481 41.667 0.00 0.00 43.35 3.08
7074 10629 2.625737 CAACATGGTACTGAGCCTCTG 58.374 52.381 0.00 0.00 0.00 3.35
7125 10680 1.173043 ACCAGCTCGAGACTGAGAAG 58.827 55.000 27.61 17.64 38.28 2.85
7262 10825 1.689813 TCTGAACCGTCCAAACTAGCA 59.310 47.619 0.00 0.00 0.00 3.49
7391 10955 1.798813 GAATAACCGACGATGATGCCC 59.201 52.381 0.00 0.00 0.00 5.36
7414 10978 2.417257 CCCGGGTCCGTGATTCGTA 61.417 63.158 14.18 0.00 37.94 3.43
7458 11023 6.422344 TGTTGTTACCTTAGATGTGGTGTA 57.578 37.500 0.00 0.00 37.74 2.90
7536 11104 1.006805 CGCATTTGCCCGGTTTTCA 60.007 52.632 0.00 0.00 37.91 2.69
7545 11113 5.413309 TTGCCCGGTTTTCATAAATCATT 57.587 34.783 0.00 0.00 0.00 2.57
7708 13078 0.171903 CTGCTTTGCATACCTGTGCC 59.828 55.000 0.00 0.00 44.43 5.01
7774 13144 5.822519 TGCTTCATAACTCGCCATTAGAATT 59.177 36.000 0.00 0.00 0.00 2.17
7870 13240 0.033601 TGTGGGCTTTGTCAGTGGTT 60.034 50.000 0.00 0.00 0.00 3.67
7904 13274 0.108472 CAGAGTCGCTTGCTCATGGA 60.108 55.000 0.00 0.00 35.55 3.41
7905 13275 0.175302 AGAGTCGCTTGCTCATGGAG 59.825 55.000 0.00 0.00 35.55 3.86
7906 13276 0.174389 GAGTCGCTTGCTCATGGAGA 59.826 55.000 0.00 0.00 33.45 3.71
7907 13277 0.610174 AGTCGCTTGCTCATGGAGAA 59.390 50.000 0.00 0.00 0.00 2.87
7908 13278 1.005340 GTCGCTTGCTCATGGAGAAG 58.995 55.000 0.00 0.34 0.00 2.85
7909 13279 0.610174 TCGCTTGCTCATGGAGAAGT 59.390 50.000 0.00 0.00 0.00 3.01
7910 13280 0.725686 CGCTTGCTCATGGAGAAGTG 59.274 55.000 0.00 2.02 0.00 3.16
7911 13281 1.673923 CGCTTGCTCATGGAGAAGTGA 60.674 52.381 0.00 0.00 33.54 3.41
7912 13282 2.641305 GCTTGCTCATGGAGAAGTGAT 58.359 47.619 0.00 0.00 0.00 3.06
7913 13283 2.355132 GCTTGCTCATGGAGAAGTGATG 59.645 50.000 0.00 0.00 0.00 3.07
7914 13284 3.870274 CTTGCTCATGGAGAAGTGATGA 58.130 45.455 0.00 0.00 0.00 2.92
7915 13285 3.257469 TGCTCATGGAGAAGTGATGAC 57.743 47.619 0.00 0.00 0.00 3.06
7916 13286 2.200067 GCTCATGGAGAAGTGATGACG 58.800 52.381 0.00 0.00 0.00 4.35
7917 13287 2.200067 CTCATGGAGAAGTGATGACGC 58.800 52.381 0.00 0.00 0.00 5.19
7918 13288 1.134699 TCATGGAGAAGTGATGACGCC 60.135 52.381 0.00 0.00 0.00 5.68
7919 13289 0.179100 ATGGAGAAGTGATGACGCCG 60.179 55.000 0.00 0.00 0.00 6.46
7920 13290 1.248101 TGGAGAAGTGATGACGCCGA 61.248 55.000 0.00 0.00 0.00 5.54
7921 13291 0.526524 GGAGAAGTGATGACGCCGAG 60.527 60.000 0.00 0.00 0.00 4.63
7922 13292 0.526524 GAGAAGTGATGACGCCGAGG 60.527 60.000 0.00 0.00 0.00 4.63
7923 13293 0.965866 AGAAGTGATGACGCCGAGGA 60.966 55.000 0.00 0.00 0.00 3.71
7924 13294 0.802607 GAAGTGATGACGCCGAGGAC 60.803 60.000 0.00 0.00 0.00 3.85
7925 13295 1.532604 AAGTGATGACGCCGAGGACA 61.533 55.000 0.00 0.00 0.00 4.02
7926 13296 1.080093 GTGATGACGCCGAGGACAA 60.080 57.895 0.00 0.00 0.00 3.18
7927 13297 1.080093 TGATGACGCCGAGGACAAC 60.080 57.895 0.00 0.00 0.00 3.32
7928 13298 1.080093 GATGACGCCGAGGACAACA 60.080 57.895 0.00 0.00 0.00 3.33
7929 13299 0.460284 GATGACGCCGAGGACAACAT 60.460 55.000 0.00 0.00 0.00 2.71
7930 13300 0.036388 ATGACGCCGAGGACAACATT 60.036 50.000 0.00 0.00 0.00 2.71
7931 13301 0.250124 TGACGCCGAGGACAACATTT 60.250 50.000 0.00 0.00 0.00 2.32
7932 13302 0.872388 GACGCCGAGGACAACATTTT 59.128 50.000 0.00 0.00 0.00 1.82
7933 13303 0.872388 ACGCCGAGGACAACATTTTC 59.128 50.000 0.00 0.00 0.00 2.29
7934 13304 1.156736 CGCCGAGGACAACATTTTCT 58.843 50.000 0.00 0.00 0.00 2.52
7935 13305 1.535462 CGCCGAGGACAACATTTTCTT 59.465 47.619 0.00 0.00 0.00 2.52
7936 13306 2.412847 CGCCGAGGACAACATTTTCTTC 60.413 50.000 0.00 0.00 0.00 2.87
7937 13307 2.412847 GCCGAGGACAACATTTTCTTCG 60.413 50.000 5.57 5.57 40.11 3.79
7938 13308 2.412847 CCGAGGACAACATTTTCTTCGC 60.413 50.000 6.74 0.00 39.34 4.70
7939 13309 2.223144 CGAGGACAACATTTTCTTCGCA 59.777 45.455 0.27 0.00 35.03 5.10
7940 13310 3.665323 CGAGGACAACATTTTCTTCGCAG 60.665 47.826 0.27 0.00 35.03 5.18
7941 13311 2.030805 AGGACAACATTTTCTTCGCAGC 60.031 45.455 0.00 0.00 0.00 5.25
7942 13312 2.287547 GGACAACATTTTCTTCGCAGCA 60.288 45.455 0.00 0.00 0.00 4.41
7943 13313 3.568538 GACAACATTTTCTTCGCAGCAT 58.431 40.909 0.00 0.00 0.00 3.79
7944 13314 3.981211 ACAACATTTTCTTCGCAGCATT 58.019 36.364 0.00 0.00 0.00 3.56
7945 13315 3.983344 ACAACATTTTCTTCGCAGCATTC 59.017 39.130 0.00 0.00 0.00 2.67
7946 13316 3.221964 ACATTTTCTTCGCAGCATTCC 57.778 42.857 0.00 0.00 0.00 3.01
7947 13317 2.821969 ACATTTTCTTCGCAGCATTCCT 59.178 40.909 0.00 0.00 0.00 3.36
7948 13318 3.256631 ACATTTTCTTCGCAGCATTCCTT 59.743 39.130 0.00 0.00 0.00 3.36
7949 13319 4.240096 CATTTTCTTCGCAGCATTCCTTT 58.760 39.130 0.00 0.00 0.00 3.11
7950 13320 2.995466 TTCTTCGCAGCATTCCTTTG 57.005 45.000 0.00 0.00 0.00 2.77
7951 13321 0.523072 TCTTCGCAGCATTCCTTTGC 59.477 50.000 0.00 0.00 43.09 3.68
7959 13329 1.913317 GCATTCCTTTGCGCCTTAAG 58.087 50.000 4.18 5.97 32.06 1.85
7960 13330 1.472480 GCATTCCTTTGCGCCTTAAGA 59.528 47.619 4.18 0.00 32.06 2.10
7961 13331 2.099756 GCATTCCTTTGCGCCTTAAGAT 59.900 45.455 4.18 0.00 32.06 2.40
7962 13332 3.429410 GCATTCCTTTGCGCCTTAAGATT 60.429 43.478 4.18 0.00 32.06 2.40
7963 13333 3.848272 TTCCTTTGCGCCTTAAGATTG 57.152 42.857 4.18 0.00 0.00 2.67
7964 13334 3.066291 TCCTTTGCGCCTTAAGATTGA 57.934 42.857 4.18 0.00 0.00 2.57
7965 13335 3.620488 TCCTTTGCGCCTTAAGATTGAT 58.380 40.909 4.18 0.00 0.00 2.57
7966 13336 4.776349 TCCTTTGCGCCTTAAGATTGATA 58.224 39.130 4.18 0.00 0.00 2.15
7967 13337 5.376625 TCCTTTGCGCCTTAAGATTGATAT 58.623 37.500 4.18 0.00 0.00 1.63
7968 13338 5.239306 TCCTTTGCGCCTTAAGATTGATATG 59.761 40.000 4.18 0.00 0.00 1.78
7969 13339 5.009010 CCTTTGCGCCTTAAGATTGATATGT 59.991 40.000 4.18 0.00 0.00 2.29
7970 13340 5.422666 TTGCGCCTTAAGATTGATATGTG 57.577 39.130 4.18 0.00 0.00 3.21
7971 13341 4.450976 TGCGCCTTAAGATTGATATGTGT 58.549 39.130 4.18 0.00 0.00 3.72
7972 13342 5.606505 TGCGCCTTAAGATTGATATGTGTA 58.393 37.500 4.18 0.00 0.00 2.90
7973 13343 5.696270 TGCGCCTTAAGATTGATATGTGTAG 59.304 40.000 4.18 0.00 0.00 2.74
7974 13344 5.926542 GCGCCTTAAGATTGATATGTGTAGA 59.073 40.000 3.36 0.00 0.00 2.59
7975 13345 6.423905 GCGCCTTAAGATTGATATGTGTAGAA 59.576 38.462 3.36 0.00 0.00 2.10
7976 13346 7.042051 GCGCCTTAAGATTGATATGTGTAGAAA 60.042 37.037 3.36 0.00 0.00 2.52
7977 13347 8.993121 CGCCTTAAGATTGATATGTGTAGAAAT 58.007 33.333 3.36 0.00 0.00 2.17
8002 13372 2.047844 CTACACAGCAGCACCGCT 60.048 61.111 0.00 0.00 45.21 5.52
8003 13373 1.215382 CTACACAGCAGCACCGCTA 59.785 57.895 0.00 0.00 41.38 4.26
8004 13374 1.078759 CTACACAGCAGCACCGCTAC 61.079 60.000 0.00 0.00 41.38 3.58
8005 13375 1.532604 TACACAGCAGCACCGCTACT 61.533 55.000 0.00 0.00 41.38 2.57
8006 13376 1.215382 CACAGCAGCACCGCTACTA 59.785 57.895 0.00 0.00 41.38 1.82
8007 13377 0.389817 CACAGCAGCACCGCTACTAA 60.390 55.000 0.00 0.00 41.38 2.24
8008 13378 0.537188 ACAGCAGCACCGCTACTAAT 59.463 50.000 0.00 0.00 41.38 1.73
8009 13379 1.754803 ACAGCAGCACCGCTACTAATA 59.245 47.619 0.00 0.00 41.38 0.98
8010 13380 2.128035 CAGCAGCACCGCTACTAATAC 58.872 52.381 0.00 0.00 41.38 1.89
8011 13381 1.129326 GCAGCACCGCTACTAATACG 58.871 55.000 0.00 0.00 36.40 3.06
8018 13388 3.722728 CCGCTACTAATACGGGAAGTT 57.277 47.619 0.00 0.00 43.23 2.66
8019 13389 3.378339 CCGCTACTAATACGGGAAGTTG 58.622 50.000 0.00 0.00 43.23 3.16
8020 13390 3.067180 CCGCTACTAATACGGGAAGTTGA 59.933 47.826 0.00 0.00 43.23 3.18
8021 13391 4.288531 CGCTACTAATACGGGAAGTTGAG 58.711 47.826 0.00 0.00 0.00 3.02
8022 13392 4.618965 GCTACTAATACGGGAAGTTGAGG 58.381 47.826 0.00 0.00 0.00 3.86
8023 13393 4.501058 GCTACTAATACGGGAAGTTGAGGG 60.501 50.000 0.00 0.00 0.00 4.30
8024 13394 3.716431 ACTAATACGGGAAGTTGAGGGA 58.284 45.455 0.00 0.00 0.00 4.20
8082 13452 1.202440 TCGTTGCGGTCAGTTTAGTGT 60.202 47.619 0.00 0.00 0.00 3.55
8256 13637 3.683340 GGTGAGATGGGTACGAGTTTTTC 59.317 47.826 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.088365 GGTTGAGGTTTTTAAAATGTGCTAGAT 58.912 33.333 0.55 0.00 0.00 1.98
33 34 7.068839 TGGTTGAGGTTTTTAAAATGTGCTAGA 59.931 33.333 0.55 0.00 0.00 2.43
35 36 7.113658 TGGTTGAGGTTTTTAAAATGTGCTA 57.886 32.000 0.55 0.00 0.00 3.49
36 37 5.983540 TGGTTGAGGTTTTTAAAATGTGCT 58.016 33.333 0.55 0.00 0.00 4.40
37 38 6.670077 TTGGTTGAGGTTTTTAAAATGTGC 57.330 33.333 0.55 0.00 0.00 4.57
70 71 9.383519 TGGTATTGTAGATCTTCATCTTTTGTC 57.616 33.333 0.00 0.00 40.18 3.18
73 74 9.965902 ACTTGGTATTGTAGATCTTCATCTTTT 57.034 29.630 0.00 0.00 40.18 2.27
74 75 9.965902 AACTTGGTATTGTAGATCTTCATCTTT 57.034 29.630 0.00 0.00 40.18 2.52
75 76 9.388506 CAACTTGGTATTGTAGATCTTCATCTT 57.611 33.333 0.00 0.00 40.18 2.40
178 179 8.412456 TCTGCAGTCAAATTTCATAAAGTTTGA 58.588 29.630 14.67 0.00 44.20 2.69
179 180 8.482429 GTCTGCAGTCAAATTTCATAAAGTTTG 58.518 33.333 14.67 0.00 41.14 2.93
180 181 8.196771 TGTCTGCAGTCAAATTTCATAAAGTTT 58.803 29.630 14.67 0.00 0.00 2.66
181 182 7.715657 TGTCTGCAGTCAAATTTCATAAAGTT 58.284 30.769 14.67 0.00 0.00 2.66
182 183 7.275888 TGTCTGCAGTCAAATTTCATAAAGT 57.724 32.000 14.67 0.00 0.00 2.66
183 184 8.578308 TTTGTCTGCAGTCAAATTTCATAAAG 57.422 30.769 27.82 0.00 30.47 1.85
184 185 9.545105 AATTTGTCTGCAGTCAAATTTCATAAA 57.455 25.926 37.11 19.27 44.83 1.40
229 230 9.483489 TGTTTAGTAATGTACTCCCTCTATTCA 57.517 33.333 0.00 0.00 40.14 2.57
234 235 9.435570 ACATATGTTTAGTAATGTACTCCCTCT 57.564 33.333 1.41 0.00 40.14 3.69
237 238 9.826574 TGAACATATGTTTAGTAATGTACTCCC 57.173 33.333 21.63 4.50 38.05 4.30
249 250 6.537566 GTGCACTGACTGAACATATGTTTAG 58.462 40.000 29.15 29.15 44.29 1.85
250 251 5.120053 CGTGCACTGACTGAACATATGTTTA 59.880 40.000 21.63 16.65 38.56 2.01
251 252 4.083855 CGTGCACTGACTGAACATATGTTT 60.084 41.667 21.63 6.76 38.56 2.83
252 253 3.433274 CGTGCACTGACTGAACATATGTT 59.567 43.478 20.93 20.93 41.64 2.71
253 254 2.995939 CGTGCACTGACTGAACATATGT 59.004 45.455 16.19 1.41 0.00 2.29
254 255 3.253230 TCGTGCACTGACTGAACATATG 58.747 45.455 16.19 0.00 0.00 1.78
255 256 3.056536 ACTCGTGCACTGACTGAACATAT 60.057 43.478 16.19 0.00 0.00 1.78
256 257 2.296190 ACTCGTGCACTGACTGAACATA 59.704 45.455 16.19 0.00 0.00 2.29
257 258 1.069204 ACTCGTGCACTGACTGAACAT 59.931 47.619 16.19 0.00 0.00 2.71
258 259 0.459899 ACTCGTGCACTGACTGAACA 59.540 50.000 16.19 0.00 0.00 3.18
259 260 0.855349 CACTCGTGCACTGACTGAAC 59.145 55.000 16.19 0.00 0.00 3.18
260 261 0.744281 TCACTCGTGCACTGACTGAA 59.256 50.000 16.19 2.24 0.00 3.02
261 262 0.961753 ATCACTCGTGCACTGACTGA 59.038 50.000 16.19 16.44 0.00 3.41
262 263 1.788258 AATCACTCGTGCACTGACTG 58.212 50.000 16.19 12.25 0.00 3.51
263 264 2.533266 AAATCACTCGTGCACTGACT 57.467 45.000 16.19 0.00 0.00 3.41
264 265 3.002246 TGAAAAATCACTCGTGCACTGAC 59.998 43.478 16.19 0.70 0.00 3.51
265 266 3.202097 TGAAAAATCACTCGTGCACTGA 58.798 40.909 16.19 12.47 0.00 3.41
266 267 3.607422 TGAAAAATCACTCGTGCACTG 57.393 42.857 16.19 10.12 0.00 3.66
267 268 4.836125 AATGAAAAATCACTCGTGCACT 57.164 36.364 16.19 0.00 0.00 4.40
268 269 7.962918 AGTATAAATGAAAAATCACTCGTGCAC 59.037 33.333 6.82 6.82 0.00 4.57
269 270 8.039603 AGTATAAATGAAAAATCACTCGTGCA 57.960 30.769 0.00 0.00 0.00 4.57
270 271 9.422196 GTAGTATAAATGAAAAATCACTCGTGC 57.578 33.333 0.00 0.00 0.00 5.34
271 272 9.916397 GGTAGTATAAATGAAAAATCACTCGTG 57.084 33.333 0.00 0.00 0.00 4.35
272 273 9.886132 AGGTAGTATAAATGAAAAATCACTCGT 57.114 29.630 0.00 0.00 0.00 4.18
280 281 9.158233 CCAGACGAAGGTAGTATAAATGAAAAA 57.842 33.333 0.00 0.00 0.00 1.94
281 282 7.767198 CCCAGACGAAGGTAGTATAAATGAAAA 59.233 37.037 0.00 0.00 0.00 2.29
282 283 7.093201 ACCCAGACGAAGGTAGTATAAATGAAA 60.093 37.037 0.00 0.00 33.52 2.69
283 284 6.381994 ACCCAGACGAAGGTAGTATAAATGAA 59.618 38.462 0.00 0.00 33.52 2.57
284 285 5.895534 ACCCAGACGAAGGTAGTATAAATGA 59.104 40.000 0.00 0.00 33.52 2.57
285 286 6.158023 ACCCAGACGAAGGTAGTATAAATG 57.842 41.667 0.00 0.00 33.52 2.32
286 287 6.803366 AACCCAGACGAAGGTAGTATAAAT 57.197 37.500 0.00 0.00 34.45 1.40
287 288 6.610075 AAACCCAGACGAAGGTAGTATAAA 57.390 37.500 0.00 0.00 34.45 1.40
288 289 7.902920 ATAAACCCAGACGAAGGTAGTATAA 57.097 36.000 0.00 0.00 34.45 0.98
289 290 7.902920 AATAAACCCAGACGAAGGTAGTATA 57.097 36.000 0.00 0.00 34.45 1.47
290 291 6.803366 AATAAACCCAGACGAAGGTAGTAT 57.197 37.500 0.00 0.00 34.45 2.12
291 292 6.891908 ACTAATAAACCCAGACGAAGGTAGTA 59.108 38.462 0.00 0.00 34.45 1.82
292 293 5.718607 ACTAATAAACCCAGACGAAGGTAGT 59.281 40.000 0.00 0.00 34.45 2.73
293 294 6.218108 ACTAATAAACCCAGACGAAGGTAG 57.782 41.667 0.00 0.00 34.45 3.18
294 295 5.127682 GGACTAATAAACCCAGACGAAGGTA 59.872 44.000 0.00 0.00 34.45 3.08
295 296 4.081254 GGACTAATAAACCCAGACGAAGGT 60.081 45.833 0.00 0.00 38.27 3.50
296 297 4.439968 GGACTAATAAACCCAGACGAAGG 58.560 47.826 0.00 0.00 0.00 3.46
297 298 4.439968 GGGACTAATAAACCCAGACGAAG 58.560 47.826 0.00 0.00 42.81 3.79
298 299 3.198417 GGGGACTAATAAACCCAGACGAA 59.802 47.826 0.00 0.00 44.87 3.85
299 300 2.767960 GGGGACTAATAAACCCAGACGA 59.232 50.000 0.00 0.00 44.87 4.20
300 301 3.189618 GGGGACTAATAAACCCAGACG 57.810 52.381 0.00 0.00 44.87 4.18
305 306 3.851458 ACGATGGGGACTAATAAACCC 57.149 47.619 0.00 0.00 43.64 4.11
306 307 7.255346 CCAAAATACGATGGGGACTAATAAACC 60.255 40.741 0.00 0.00 32.87 3.27
307 308 7.645402 CCAAAATACGATGGGGACTAATAAAC 58.355 38.462 0.00 0.00 32.87 2.01
308 309 7.811117 CCAAAATACGATGGGGACTAATAAA 57.189 36.000 0.00 0.00 32.87 1.40
319 320 5.835113 ATCTTTGACCCAAAATACGATGG 57.165 39.130 0.00 0.00 32.75 3.51
320 321 6.317642 TGGTATCTTTGACCCAAAATACGATG 59.682 38.462 0.00 0.00 35.99 3.84
321 322 6.317893 GTGGTATCTTTGACCCAAAATACGAT 59.682 38.462 0.00 0.00 35.99 3.73
322 323 5.644636 GTGGTATCTTTGACCCAAAATACGA 59.355 40.000 0.00 0.00 35.99 3.43
323 324 5.413213 TGTGGTATCTTTGACCCAAAATACG 59.587 40.000 0.00 0.00 35.99 3.06
324 325 6.827586 TGTGGTATCTTTGACCCAAAATAC 57.172 37.500 0.00 0.00 35.99 1.89
325 326 9.707957 AATATGTGGTATCTTTGACCCAAAATA 57.292 29.630 0.00 0.00 35.99 1.40
326 327 8.608185 AATATGTGGTATCTTTGACCCAAAAT 57.392 30.769 0.00 0.00 35.99 1.82
327 328 8.310382 CAAATATGTGGTATCTTTGACCCAAAA 58.690 33.333 0.00 0.00 35.99 2.44
328 329 7.671819 TCAAATATGTGGTATCTTTGACCCAAA 59.328 33.333 0.00 0.00 35.99 3.28
329 330 7.122055 GTCAAATATGTGGTATCTTTGACCCAA 59.878 37.037 14.72 0.00 35.95 4.12
330 331 6.601613 GTCAAATATGTGGTATCTTTGACCCA 59.398 38.462 14.72 0.00 35.95 4.51
331 332 6.601613 TGTCAAATATGTGGTATCTTTGACCC 59.398 38.462 19.29 5.56 38.55 4.46
332 333 7.624360 TGTCAAATATGTGGTATCTTTGACC 57.376 36.000 19.29 0.59 38.55 4.02
333 334 9.341899 GTTTGTCAAATATGTGGTATCTTTGAC 57.658 33.333 17.06 17.06 39.15 3.18
334 335 9.072375 TGTTTGTCAAATATGTGGTATCTTTGA 57.928 29.630 0.40 0.00 0.00 2.69
335 336 9.689976 TTGTTTGTCAAATATGTGGTATCTTTG 57.310 29.630 0.40 0.00 32.64 2.77
340 341 9.995003 ACATTTTGTTTGTCAAATATGTGGTAT 57.005 25.926 0.40 0.00 44.15 2.73
341 342 9.823647 AACATTTTGTTTGTCAAATATGTGGTA 57.176 25.926 0.40 0.00 44.15 3.25
342 343 8.729805 AACATTTTGTTTGTCAAATATGTGGT 57.270 26.923 0.40 0.00 44.15 4.16
349 350 8.165428 CGTGTGTTAACATTTTGTTTGTCAAAT 58.835 29.630 12.26 0.00 44.15 2.32
350 351 7.169308 ACGTGTGTTAACATTTTGTTTGTCAAA 59.831 29.630 12.26 0.00 41.45 2.69
351 352 6.641314 ACGTGTGTTAACATTTTGTTTGTCAA 59.359 30.769 12.26 0.00 41.45 3.18
352 353 6.150318 ACGTGTGTTAACATTTTGTTTGTCA 58.850 32.000 12.26 0.00 41.45 3.58
353 354 6.620253 ACGTGTGTTAACATTTTGTTTGTC 57.380 33.333 12.26 0.00 41.45 3.18
354 355 8.690680 ATAACGTGTGTTAACATTTTGTTTGT 57.309 26.923 12.26 5.11 43.43 2.83
383 384 9.612066 ACATTCAAATACAAATCCAACAAGTTT 57.388 25.926 0.00 0.00 0.00 2.66
385 386 9.691362 GTACATTCAAATACAAATCCAACAAGT 57.309 29.630 0.00 0.00 0.00 3.16
386 387 9.912634 AGTACATTCAAATACAAATCCAACAAG 57.087 29.630 0.00 0.00 0.00 3.16
470 471 5.949354 CCCTGTATTTTGGGTCATACTTTGA 59.051 40.000 0.00 0.00 38.65 2.69
471 472 5.949354 TCCCTGTATTTTGGGTCATACTTTG 59.051 40.000 0.00 0.00 43.74 2.77
472 473 5.949952 GTCCCTGTATTTTGGGTCATACTTT 59.050 40.000 0.00 0.00 43.74 2.66
473 474 5.253096 AGTCCCTGTATTTTGGGTCATACTT 59.747 40.000 0.00 0.00 43.74 2.24
474 475 4.788617 AGTCCCTGTATTTTGGGTCATACT 59.211 41.667 0.00 0.00 43.74 2.12
475 476 5.112129 AGTCCCTGTATTTTGGGTCATAC 57.888 43.478 0.00 0.00 43.74 2.39
476 477 5.968167 ACTAGTCCCTGTATTTTGGGTCATA 59.032 40.000 0.00 0.00 43.74 2.15
477 478 4.788617 ACTAGTCCCTGTATTTTGGGTCAT 59.211 41.667 0.00 0.00 43.74 3.06
478 479 4.172807 ACTAGTCCCTGTATTTTGGGTCA 58.827 43.478 0.00 0.00 43.74 4.02
479 480 4.838904 ACTAGTCCCTGTATTTTGGGTC 57.161 45.455 0.00 0.00 43.74 4.46
480 481 5.312443 AGAAACTAGTCCCTGTATTTTGGGT 59.688 40.000 0.00 0.00 43.74 4.51
481 482 5.816682 AGAAACTAGTCCCTGTATTTTGGG 58.183 41.667 0.00 0.00 44.66 4.12
482 483 7.761038 AAAGAAACTAGTCCCTGTATTTTGG 57.239 36.000 0.00 0.00 0.00 3.28
483 484 8.947115 CCTAAAGAAACTAGTCCCTGTATTTTG 58.053 37.037 0.00 0.00 0.00 2.44
484 485 8.107729 CCCTAAAGAAACTAGTCCCTGTATTTT 58.892 37.037 0.00 0.00 0.00 1.82
485 486 7.311739 CCCCTAAAGAAACTAGTCCCTGTATTT 60.312 40.741 0.00 0.00 0.00 1.40
486 487 6.158169 CCCCTAAAGAAACTAGTCCCTGTATT 59.842 42.308 0.00 0.00 0.00 1.89
487 488 5.666265 CCCCTAAAGAAACTAGTCCCTGTAT 59.334 44.000 0.00 0.00 0.00 2.29
488 489 5.028131 CCCCTAAAGAAACTAGTCCCTGTA 58.972 45.833 0.00 0.00 0.00 2.74
489 490 3.844804 CCCCTAAAGAAACTAGTCCCTGT 59.155 47.826 0.00 0.00 0.00 4.00
490 491 3.844804 ACCCCTAAAGAAACTAGTCCCTG 59.155 47.826 0.00 0.00 0.00 4.45
491 492 4.157668 ACCCCTAAAGAAACTAGTCCCT 57.842 45.455 0.00 0.00 0.00 4.20
492 493 4.923516 AACCCCTAAAGAAACTAGTCCC 57.076 45.455 0.00 0.00 0.00 4.46
493 494 6.772605 TGTAAACCCCTAAAGAAACTAGTCC 58.227 40.000 0.00 0.00 0.00 3.85
494 495 6.877855 CCTGTAAACCCCTAAAGAAACTAGTC 59.122 42.308 0.00 0.00 0.00 2.59
495 496 6.559921 TCCTGTAAACCCCTAAAGAAACTAGT 59.440 38.462 0.00 0.00 0.00 2.57
496 497 6.877855 GTCCTGTAAACCCCTAAAGAAACTAG 59.122 42.308 0.00 0.00 0.00 2.57
497 498 6.559921 AGTCCTGTAAACCCCTAAAGAAACTA 59.440 38.462 0.00 0.00 0.00 2.24
498 499 5.371769 AGTCCTGTAAACCCCTAAAGAAACT 59.628 40.000 0.00 0.00 0.00 2.66
499 500 5.628130 AGTCCTGTAAACCCCTAAAGAAAC 58.372 41.667 0.00 0.00 0.00 2.78
500 501 5.917545 AGTCCTGTAAACCCCTAAAGAAA 57.082 39.130 0.00 0.00 0.00 2.52
501 502 6.325352 TCTAGTCCTGTAAACCCCTAAAGAA 58.675 40.000 0.00 0.00 0.00 2.52
502 503 5.907421 TCTAGTCCTGTAAACCCCTAAAGA 58.093 41.667 0.00 0.00 0.00 2.52
503 504 6.809976 ATCTAGTCCTGTAAACCCCTAAAG 57.190 41.667 0.00 0.00 0.00 1.85
504 505 7.578458 AAATCTAGTCCTGTAAACCCCTAAA 57.422 36.000 0.00 0.00 0.00 1.85
505 506 7.578458 AAAATCTAGTCCTGTAAACCCCTAA 57.422 36.000 0.00 0.00 0.00 2.69
506 507 7.578458 AAAAATCTAGTCCTGTAAACCCCTA 57.422 36.000 0.00 0.00 0.00 3.53
507 508 6.464530 AAAAATCTAGTCCTGTAAACCCCT 57.535 37.500 0.00 0.00 0.00 4.79
530 531 1.437397 ACTCCCGTACCCCTCAAAAA 58.563 50.000 0.00 0.00 0.00 1.94
531 532 2.181975 CTACTCCCGTACCCCTCAAAA 58.818 52.381 0.00 0.00 0.00 2.44
532 533 1.077663 ACTACTCCCGTACCCCTCAAA 59.922 52.381 0.00 0.00 0.00 2.69
533 534 0.706433 ACTACTCCCGTACCCCTCAA 59.294 55.000 0.00 0.00 0.00 3.02
534 535 1.595311 TACTACTCCCGTACCCCTCA 58.405 55.000 0.00 0.00 0.00 3.86
535 536 2.736670 TTACTACTCCCGTACCCCTC 57.263 55.000 0.00 0.00 0.00 4.30
536 537 3.052642 TCATTTACTACTCCCGTACCCCT 60.053 47.826 0.00 0.00 0.00 4.79
537 538 3.299503 TCATTTACTACTCCCGTACCCC 58.700 50.000 0.00 0.00 0.00 4.95
538 539 3.320256 CCTCATTTACTACTCCCGTACCC 59.680 52.174 0.00 0.00 0.00 3.69
539 540 4.210331 TCCTCATTTACTACTCCCGTACC 58.790 47.826 0.00 0.00 0.00 3.34
540 541 4.277921 CCTCCTCATTTACTACTCCCGTAC 59.722 50.000 0.00 0.00 0.00 3.67
541 542 4.467769 CCTCCTCATTTACTACTCCCGTA 58.532 47.826 0.00 0.00 0.00 4.02
542 543 3.297736 CCTCCTCATTTACTACTCCCGT 58.702 50.000 0.00 0.00 0.00 5.28
543 544 2.628657 CCCTCCTCATTTACTACTCCCG 59.371 54.545 0.00 0.00 0.00 5.14
544 545 3.924922 TCCCTCCTCATTTACTACTCCC 58.075 50.000 0.00 0.00 0.00 4.30
545 546 7.800300 AATATCCCTCCTCATTTACTACTCC 57.200 40.000 0.00 0.00 0.00 3.85
575 576 5.060427 TCCCTCCTCATTTGTCTCAAAAA 57.940 39.130 0.00 0.00 0.00 1.94
576 577 4.722526 TCCCTCCTCATTTGTCTCAAAA 57.277 40.909 0.00 0.00 0.00 2.44
577 578 4.934797 ATCCCTCCTCATTTGTCTCAAA 57.065 40.909 0.00 0.00 0.00 2.69
578 579 6.846505 ACTATATCCCTCCTCATTTGTCTCAA 59.153 38.462 0.00 0.00 0.00 3.02
579 580 6.268617 CACTATATCCCTCCTCATTTGTCTCA 59.731 42.308 0.00 0.00 0.00 3.27
580 581 6.268847 ACACTATATCCCTCCTCATTTGTCTC 59.731 42.308 0.00 0.00 0.00 3.36
581 582 6.146760 ACACTATATCCCTCCTCATTTGTCT 58.853 40.000 0.00 0.00 0.00 3.41
582 583 6.426646 ACACTATATCCCTCCTCATTTGTC 57.573 41.667 0.00 0.00 0.00 3.18
583 584 7.527868 GCATACACTATATCCCTCCTCATTTGT 60.528 40.741 0.00 0.00 0.00 2.83
584 585 6.820656 GCATACACTATATCCCTCCTCATTTG 59.179 42.308 0.00 0.00 0.00 2.32
585 586 6.069963 GGCATACACTATATCCCTCCTCATTT 60.070 42.308 0.00 0.00 0.00 2.32
586 587 5.426833 GGCATACACTATATCCCTCCTCATT 59.573 44.000 0.00 0.00 0.00 2.57
587 588 4.965532 GGCATACACTATATCCCTCCTCAT 59.034 45.833 0.00 0.00 0.00 2.90
588 589 4.353777 GGCATACACTATATCCCTCCTCA 58.646 47.826 0.00 0.00 0.00 3.86
589 590 3.707102 GGGCATACACTATATCCCTCCTC 59.293 52.174 0.00 0.00 31.24 3.71
590 591 3.725634 GGGCATACACTATATCCCTCCT 58.274 50.000 0.00 0.00 31.24 3.69
591 592 2.431057 CGGGCATACACTATATCCCTCC 59.569 54.545 0.00 0.00 31.55 4.30
592 593 3.362706 TCGGGCATACACTATATCCCTC 58.637 50.000 0.00 0.00 31.55 4.30
593 594 3.245658 ACTCGGGCATACACTATATCCCT 60.246 47.826 0.00 0.00 31.55 4.20
594 595 3.097614 ACTCGGGCATACACTATATCCC 58.902 50.000 0.00 0.00 0.00 3.85
595 596 3.762288 TCACTCGGGCATACACTATATCC 59.238 47.826 0.00 0.00 0.00 2.59
596 597 5.344066 CATCACTCGGGCATACACTATATC 58.656 45.833 0.00 0.00 0.00 1.63
597 598 4.160439 CCATCACTCGGGCATACACTATAT 59.840 45.833 0.00 0.00 0.00 0.86
604 605 4.779475 CCCATCACTCGGGCATAC 57.221 61.111 0.00 0.00 36.72 2.39
685 686 3.622060 CTACGGGCCTGGTTGGTGG 62.622 68.421 18.00 0.00 38.35 4.61
756 793 8.229811 GCTTTGAGCGAAATTTCCATTTTTATT 58.770 29.630 12.54 0.00 32.35 1.40
758 795 7.116061 GCTTTGAGCGAAATTTCCATTTTTA 57.884 32.000 12.54 0.00 32.35 1.52
807 851 0.323451 CCCCTTTTCCTTCCCTTCCG 60.323 60.000 0.00 0.00 0.00 4.30
859 903 4.821589 CTGCTCCCCGTCTTCGCC 62.822 72.222 0.00 0.00 35.54 5.54
860 904 2.781595 TTTCTGCTCCCCGTCTTCGC 62.782 60.000 0.00 0.00 35.54 4.70
863 907 0.765510 AGTTTTCTGCTCCCCGTCTT 59.234 50.000 0.00 0.00 0.00 3.01
864 908 0.321996 GAGTTTTCTGCTCCCCGTCT 59.678 55.000 0.00 0.00 0.00 4.18
865 909 0.673956 GGAGTTTTCTGCTCCCCGTC 60.674 60.000 0.12 0.00 45.05 4.79
866 910 1.375326 GGAGTTTTCTGCTCCCCGT 59.625 57.895 0.12 0.00 45.05 5.28
867 911 4.303257 GGAGTTTTCTGCTCCCCG 57.697 61.111 0.12 0.00 45.05 5.73
871 915 0.955919 CGGGGTGGAGTTTTCTGCTC 60.956 60.000 0.00 0.00 39.08 4.26
872 916 1.073199 CGGGGTGGAGTTTTCTGCT 59.927 57.895 0.00 0.00 39.08 4.24
873 917 1.072505 TCGGGGTGGAGTTTTCTGC 59.927 57.895 0.00 0.00 38.78 4.26
874 918 0.949105 CGTCGGGGTGGAGTTTTCTG 60.949 60.000 0.00 0.00 0.00 3.02
875 919 1.370064 CGTCGGGGTGGAGTTTTCT 59.630 57.895 0.00 0.00 0.00 2.52
876 920 1.670083 CCGTCGGGGTGGAGTTTTC 60.670 63.158 2.34 0.00 0.00 2.29
877 921 2.108278 CTCCGTCGGGGTGGAGTTTT 62.108 60.000 12.29 0.00 45.48 2.43
878 922 2.524887 TCCGTCGGGGTGGAGTTT 60.525 61.111 12.29 0.00 37.00 2.66
879 923 2.995574 CTCCGTCGGGGTGGAGTT 60.996 66.667 12.29 0.00 45.48 3.01
1323 1395 2.369394 CTGGCCTTGGATTTGAGGTAC 58.631 52.381 3.32 0.00 35.42 3.34
1522 1594 2.819595 CTCAACGGCGTCCCCATG 60.820 66.667 15.17 7.81 0.00 3.66
1530 1602 4.856801 CCATCCCCCTCAACGGCG 62.857 72.222 4.80 4.80 0.00 6.46
1755 1827 3.324117 CCTCATCTCATTCAGCATACCG 58.676 50.000 0.00 0.00 0.00 4.02
2040 2121 4.022329 ACCAAGCTATACAAGTTTTGCCAC 60.022 41.667 0.00 0.00 0.00 5.01
2215 2297 1.380515 TTGTTGGTGGTGGTGGTGG 60.381 57.895 0.00 0.00 0.00 4.61
2216 2298 0.967887 TGTTGTTGGTGGTGGTGGTG 60.968 55.000 0.00 0.00 0.00 4.17
2217 2299 0.251832 TTGTTGTTGGTGGTGGTGGT 60.252 50.000 0.00 0.00 0.00 4.16
2218 2300 0.174617 GTTGTTGTTGGTGGTGGTGG 59.825 55.000 0.00 0.00 0.00 4.61
2219 2301 0.891373 TGTTGTTGTTGGTGGTGGTG 59.109 50.000 0.00 0.00 0.00 4.17
2220 2302 1.273886 GTTGTTGTTGTTGGTGGTGGT 59.726 47.619 0.00 0.00 0.00 4.16
2221 2303 1.273606 TGTTGTTGTTGTTGGTGGTGG 59.726 47.619 0.00 0.00 0.00 4.61
2222 2304 2.732412 TGTTGTTGTTGTTGGTGGTG 57.268 45.000 0.00 0.00 0.00 4.17
2223 2305 3.658709 CTTTGTTGTTGTTGTTGGTGGT 58.341 40.909 0.00 0.00 0.00 4.16
2224 2306 2.414825 GCTTTGTTGTTGTTGTTGGTGG 59.585 45.455 0.00 0.00 0.00 4.61
2225 2307 2.414825 GGCTTTGTTGTTGTTGTTGGTG 59.585 45.455 0.00 0.00 0.00 4.17
2226 2308 2.301583 AGGCTTTGTTGTTGTTGTTGGT 59.698 40.909 0.00 0.00 0.00 3.67
2227 2309 2.971307 AGGCTTTGTTGTTGTTGTTGG 58.029 42.857 0.00 0.00 0.00 3.77
2228 2310 4.450419 TGAAAGGCTTTGTTGTTGTTGTTG 59.550 37.500 18.79 0.00 0.00 3.33
2229 2311 4.636249 TGAAAGGCTTTGTTGTTGTTGTT 58.364 34.783 18.79 0.00 0.00 2.83
2339 2440 3.747852 AGGAGGGGGATGAAAGTAATGA 58.252 45.455 0.00 0.00 0.00 2.57
2404 2505 6.020440 CACTGGCATCAAAGTAAAATTATGCG 60.020 38.462 0.00 0.00 40.41 4.73
2430 2531 3.558931 TCACAAAAGTTCTGGCTCAGA 57.441 42.857 1.25 1.25 38.87 3.27
2514 2616 2.223479 CGTTTGGGGCTATGTTACATGC 60.223 50.000 8.26 9.28 0.00 4.06
2518 2620 2.676342 CTGACGTTTGGGGCTATGTTAC 59.324 50.000 0.00 0.00 0.00 2.50
2535 2637 4.853924 AATGTGGATTTGTGGTTCTGAC 57.146 40.909 0.00 0.00 0.00 3.51
2537 2639 9.304731 CATTATTAATGTGGATTTGTGGTTCTG 57.695 33.333 8.04 0.00 34.18 3.02
2538 2640 9.253832 TCATTATTAATGTGGATTTGTGGTTCT 57.746 29.630 14.48 0.00 39.87 3.01
2672 2774 3.808728 TGCCTGGTTCTATGACTTATGC 58.191 45.455 0.00 0.00 0.00 3.14
2737 2839 5.901276 AGGATGTTTGGATGCTAATTTGGAT 59.099 36.000 0.00 0.00 0.00 3.41
2739 2841 5.603170 AGGATGTTTGGATGCTAATTTGG 57.397 39.130 0.00 0.00 0.00 3.28
2796 2899 8.970691 AATCACAGCACTTAATTTATGTGAAC 57.029 30.769 20.63 8.48 46.97 3.18
2848 2951 4.362932 TCTGACTGTCTCTATTCTTGCG 57.637 45.455 9.51 0.00 0.00 4.85
2886 2989 5.046529 AGCTCTGTGATTTTCTATAGCACG 58.953 41.667 0.00 0.00 32.39 5.34
2919 3022 2.613691 AGCTAAACCGGTCATAACACG 58.386 47.619 8.04 0.00 0.00 4.49
3098 3201 1.076192 TAGGGTTCCGGCTCCTCTC 60.076 63.158 12.29 0.00 32.46 3.20
3261 3365 2.741985 CTGTTCGGCATGACGGCA 60.742 61.111 23.19 18.90 41.26 5.69
3262 3366 3.499737 CCTGTTCGGCATGACGGC 61.500 66.667 23.19 15.08 0.00 5.68
3263 3367 2.819595 CCCTGTTCGGCATGACGG 60.820 66.667 23.19 4.26 0.00 4.79
3272 3376 2.320587 GCAGTCACAGCCCTGTTCG 61.321 63.158 0.00 0.00 42.83 3.95
3276 3380 2.433838 CGAGCAGTCACAGCCCTG 60.434 66.667 0.00 0.00 0.00 4.45
3277 3381 2.919856 ACGAGCAGTCACAGCCCT 60.920 61.111 0.00 0.00 0.00 5.19
3278 3382 2.740055 CACGAGCAGTCACAGCCC 60.740 66.667 0.00 0.00 0.00 5.19
3279 3383 1.560860 GAACACGAGCAGTCACAGCC 61.561 60.000 0.00 0.00 0.00 4.85
3283 3387 1.668151 GGGGAACACGAGCAGTCAC 60.668 63.158 0.00 0.00 0.00 3.67
3285 3389 1.374758 CAGGGGAACACGAGCAGTC 60.375 63.158 0.00 0.00 0.00 3.51
3286 3390 2.743718 CAGGGGAACACGAGCAGT 59.256 61.111 0.00 0.00 0.00 4.40
3287 3391 2.743928 GCAGGGGAACACGAGCAG 60.744 66.667 0.00 0.00 0.00 4.24
3289 3393 3.050275 GTGCAGGGGAACACGAGC 61.050 66.667 0.00 0.00 0.00 5.03
3290 3394 2.358737 GGTGCAGGGGAACACGAG 60.359 66.667 0.00 0.00 37.68 4.18
3292 3396 2.978010 GTGGTGCAGGGGAACACG 60.978 66.667 0.00 0.00 37.68 4.49
3293 3397 2.597510 GGTGGTGCAGGGGAACAC 60.598 66.667 0.00 0.00 36.03 3.32
3294 3398 4.263572 CGGTGGTGCAGGGGAACA 62.264 66.667 0.00 0.00 0.00 3.18
3628 4048 2.357517 AACGGCAACAGCGAGGAG 60.358 61.111 0.00 0.00 0.00 3.69
3629 4049 2.357034 GAACGGCAACAGCGAGGA 60.357 61.111 0.00 0.00 0.00 3.71
3842 4728 0.250081 GACTTGATGGATCGGGAGGC 60.250 60.000 0.00 0.00 0.00 4.70
4064 4956 4.736896 GCGGTGTCTGGGTCGGAC 62.737 72.222 0.00 0.00 39.93 4.79
4150 5042 1.566018 CCGCGGAAGAACTGGTCAAC 61.566 60.000 24.07 0.00 0.00 3.18
4486 5379 1.218316 GTCCCCTAAGCTCCACGTG 59.782 63.158 9.08 9.08 0.00 4.49
5110 6050 1.983119 CTCTGGGAGCCGGGCAATAA 61.983 60.000 23.09 2.95 0.00 1.40
5440 6526 3.763360 TGTGATAAAACAATGGGCTCCTG 59.237 43.478 0.00 0.00 0.00 3.86
5453 6539 7.547722 AGCAGTCAATGTACGTATGTGATAAAA 59.452 33.333 0.00 0.00 0.00 1.52
5887 7267 1.022903 ATAAAAATGGGGCAGGGGGA 58.977 50.000 0.00 0.00 0.00 4.81
5891 7271 6.374053 CCTTGTTTTAATAAAAATGGGGCAGG 59.626 38.462 0.00 0.00 36.96 4.85
6048 9578 2.104111 AGTGGGTGATCAAACTGACGAA 59.896 45.455 0.00 0.00 0.00 3.85
6092 9622 1.207570 CAGCAGGCTTCTCAGTCTCAT 59.792 52.381 0.00 0.00 29.90 2.90
6106 9636 9.941325 ACATAATTCTAAGAAGATATCAGCAGG 57.059 33.333 5.32 0.00 0.00 4.85
6159 9689 8.308207 GGAGTGATAGAAGAGAAGTAACTGTTT 58.692 37.037 0.00 0.00 0.00 2.83
6257 9796 1.270094 ACGATCGAGGCACAAAACTGA 60.270 47.619 24.34 0.00 0.00 3.41
6373 9915 7.922811 CAGAAAGTAGCAAGAACTGGAATTTTT 59.077 33.333 0.00 0.00 0.00 1.94
6440 9982 3.338249 TGCAGGCAGTAGAAAGATCAAC 58.662 45.455 0.00 0.00 0.00 3.18
6457 9999 2.089201 TCCAGCTCAAATGTCATGCAG 58.911 47.619 0.00 0.00 0.00 4.41
6731 10278 4.320870 GACCTGTATTGAAGGGAACGAAA 58.679 43.478 0.00 0.00 39.30 3.46
6806 10353 3.593442 TCCTTTTCTGAAGCAAAGGGA 57.407 42.857 17.76 10.23 44.79 4.20
6987 10542 5.005628 AGTGGCCTGGTTTTTAATCCTAA 57.994 39.130 3.32 0.00 0.00 2.69
7000 10555 1.123077 TACATGCTAGAGTGGCCTGG 58.877 55.000 3.32 0.00 31.38 4.45
7074 10629 3.123621 CGACTAGCCTGTTCACAAACATC 59.876 47.826 0.00 0.00 44.18 3.06
7125 10680 2.225255 GACTTCAGCTTCTTTCTGTGCC 59.775 50.000 0.00 0.00 33.48 5.01
7262 10825 7.962995 TTCTTATCTGGTGTATCTGTCTTCT 57.037 36.000 0.00 0.00 0.00 2.85
7414 10978 1.686355 TTCACGATTGGGTTTGCACT 58.314 45.000 0.00 0.00 0.00 4.40
7458 11023 2.352651 CTGTCATGGTTGCGATTTCGAT 59.647 45.455 3.77 0.00 43.02 3.59
7545 11113 4.891168 TGGAACTGCGGTTATACATCTCTA 59.109 41.667 11.80 0.00 35.58 2.43
7701 13071 3.902112 AAGTGGTGGGGGCACAGG 61.902 66.667 0.00 0.00 0.00 4.00
7774 13144 0.250252 TTGACGACATTGCAGCTCCA 60.250 50.000 0.00 0.00 0.00 3.86
7870 13240 0.601046 CTCTGACTTCACCGCAAGCA 60.601 55.000 0.00 0.00 0.00 3.91
7904 13274 0.965866 TCCTCGGCGTCATCACTTCT 60.966 55.000 6.85 0.00 0.00 2.85
7905 13275 0.802607 GTCCTCGGCGTCATCACTTC 60.803 60.000 6.85 0.00 0.00 3.01
7906 13276 1.215647 GTCCTCGGCGTCATCACTT 59.784 57.895 6.85 0.00 0.00 3.16
7907 13277 1.532604 TTGTCCTCGGCGTCATCACT 61.533 55.000 6.85 0.00 0.00 3.41
7908 13278 1.080093 TTGTCCTCGGCGTCATCAC 60.080 57.895 6.85 0.00 0.00 3.06
7909 13279 1.080093 GTTGTCCTCGGCGTCATCA 60.080 57.895 6.85 0.00 0.00 3.07
7910 13280 0.460284 ATGTTGTCCTCGGCGTCATC 60.460 55.000 6.85 3.03 0.00 2.92
7911 13281 0.036388 AATGTTGTCCTCGGCGTCAT 60.036 50.000 6.85 0.00 0.00 3.06
7912 13282 0.250124 AAATGTTGTCCTCGGCGTCA 60.250 50.000 6.85 0.00 0.00 4.35
7913 13283 0.872388 AAAATGTTGTCCTCGGCGTC 59.128 50.000 6.85 0.00 0.00 5.19
7914 13284 0.872388 GAAAATGTTGTCCTCGGCGT 59.128 50.000 6.85 0.00 0.00 5.68
7915 13285 1.156736 AGAAAATGTTGTCCTCGGCG 58.843 50.000 0.00 0.00 0.00 6.46
7916 13286 2.412847 CGAAGAAAATGTTGTCCTCGGC 60.413 50.000 0.00 0.00 0.00 5.54
7917 13287 2.412847 GCGAAGAAAATGTTGTCCTCGG 60.413 50.000 6.18 0.00 0.00 4.63
7918 13288 2.223144 TGCGAAGAAAATGTTGTCCTCG 59.777 45.455 0.64 0.64 0.00 4.63
7919 13289 3.814945 CTGCGAAGAAAATGTTGTCCTC 58.185 45.455 0.00 0.00 0.00 3.71
7920 13290 2.030805 GCTGCGAAGAAAATGTTGTCCT 60.031 45.455 0.00 0.00 0.00 3.85
7921 13291 2.287547 TGCTGCGAAGAAAATGTTGTCC 60.288 45.455 0.00 0.00 0.00 4.02
7922 13292 2.998772 TGCTGCGAAGAAAATGTTGTC 58.001 42.857 0.00 0.00 0.00 3.18
7923 13293 3.648339 ATGCTGCGAAGAAAATGTTGT 57.352 38.095 0.00 0.00 0.00 3.32
7924 13294 3.365820 GGAATGCTGCGAAGAAAATGTTG 59.634 43.478 0.00 0.00 0.00 3.33
7925 13295 3.256631 AGGAATGCTGCGAAGAAAATGTT 59.743 39.130 0.00 0.00 0.00 2.71
7926 13296 2.821969 AGGAATGCTGCGAAGAAAATGT 59.178 40.909 0.00 0.00 0.00 2.71
7927 13297 3.498927 AGGAATGCTGCGAAGAAAATG 57.501 42.857 0.00 0.00 0.00 2.32
7928 13298 4.240096 CAAAGGAATGCTGCGAAGAAAAT 58.760 39.130 0.00 0.00 0.00 1.82
7929 13299 3.641648 CAAAGGAATGCTGCGAAGAAAA 58.358 40.909 0.00 0.00 0.00 2.29
7930 13300 2.607771 GCAAAGGAATGCTGCGAAGAAA 60.608 45.455 0.00 0.00 43.06 2.52
7931 13301 1.068333 GCAAAGGAATGCTGCGAAGAA 60.068 47.619 0.00 0.00 43.06 2.52
7932 13302 0.523072 GCAAAGGAATGCTGCGAAGA 59.477 50.000 0.00 0.00 43.06 2.87
7933 13303 3.025866 GCAAAGGAATGCTGCGAAG 57.974 52.632 0.00 0.00 43.06 3.79
7937 13307 2.496828 AAGGCGCAAAGGAATGCTGC 62.497 55.000 10.83 0.00 44.21 5.25
7938 13308 0.810648 TAAGGCGCAAAGGAATGCTG 59.189 50.000 10.83 0.00 44.21 4.41
7939 13309 1.474077 CTTAAGGCGCAAAGGAATGCT 59.526 47.619 10.83 0.00 44.21 3.79
7940 13310 1.472480 TCTTAAGGCGCAAAGGAATGC 59.528 47.619 10.83 0.00 42.94 3.56
7941 13311 4.107622 CAATCTTAAGGCGCAAAGGAATG 58.892 43.478 10.83 0.00 0.00 2.67
7942 13312 4.016444 TCAATCTTAAGGCGCAAAGGAAT 58.984 39.130 10.83 0.00 0.00 3.01
7943 13313 3.417101 TCAATCTTAAGGCGCAAAGGAA 58.583 40.909 10.83 0.00 0.00 3.36
7944 13314 3.066291 TCAATCTTAAGGCGCAAAGGA 57.934 42.857 10.83 0.00 0.00 3.36
7945 13315 5.009010 ACATATCAATCTTAAGGCGCAAAGG 59.991 40.000 10.83 0.00 0.00 3.11
7946 13316 5.911280 CACATATCAATCTTAAGGCGCAAAG 59.089 40.000 10.83 9.94 0.00 2.77
7947 13317 5.356751 ACACATATCAATCTTAAGGCGCAAA 59.643 36.000 10.83 0.00 0.00 3.68
7948 13318 4.881273 ACACATATCAATCTTAAGGCGCAA 59.119 37.500 10.83 0.00 0.00 4.85
7949 13319 4.450976 ACACATATCAATCTTAAGGCGCA 58.549 39.130 10.83 0.00 0.00 6.09
7950 13320 5.926542 TCTACACATATCAATCTTAAGGCGC 59.073 40.000 0.00 0.00 0.00 6.53
7951 13321 7.946655 TTCTACACATATCAATCTTAAGGCG 57.053 36.000 1.85 0.00 0.00 5.52
7964 13334 9.840427 GTGTAGCAAACAAATTTCTACACATAT 57.160 29.630 26.52 1.07 45.16 1.78
7965 13335 8.841300 TGTGTAGCAAACAAATTTCTACACATA 58.159 29.630 28.47 17.05 46.98 2.29
7966 13336 7.711846 TGTGTAGCAAACAAATTTCTACACAT 58.288 30.769 28.47 4.43 46.98 3.21
7968 13338 7.608974 CTGTGTAGCAAACAAATTTCTACAC 57.391 36.000 25.61 25.61 45.48 2.90
7985 13355 1.078759 GTAGCGGTGCTGCTGTGTAG 61.079 60.000 15.13 0.00 46.70 2.74
7986 13356 1.080093 GTAGCGGTGCTGCTGTGTA 60.080 57.895 15.13 0.00 46.70 2.90
7987 13357 2.357517 GTAGCGGTGCTGCTGTGT 60.358 61.111 15.13 0.00 46.70 3.72
7992 13362 1.129326 CGTATTAGTAGCGGTGCTGC 58.871 55.000 15.80 0.00 40.10 5.25
7993 13363 1.602165 CCCGTATTAGTAGCGGTGCTG 60.602 57.143 15.80 0.00 43.56 4.41
7994 13364 0.672342 CCCGTATTAGTAGCGGTGCT 59.328 55.000 10.72 10.72 43.56 4.40
7995 13365 0.670162 TCCCGTATTAGTAGCGGTGC 59.330 55.000 0.00 0.00 43.56 5.01
7996 13366 2.360165 ACTTCCCGTATTAGTAGCGGTG 59.640 50.000 0.00 0.00 43.56 4.94
7997 13367 2.659428 ACTTCCCGTATTAGTAGCGGT 58.341 47.619 0.00 0.00 43.56 5.68
7998 13368 3.067180 TCAACTTCCCGTATTAGTAGCGG 59.933 47.826 0.00 0.00 44.55 5.52
7999 13369 4.288531 CTCAACTTCCCGTATTAGTAGCG 58.711 47.826 0.00 0.00 0.00 4.26
8000 13370 4.501058 CCCTCAACTTCCCGTATTAGTAGC 60.501 50.000 0.00 0.00 0.00 3.58
8001 13371 4.891756 TCCCTCAACTTCCCGTATTAGTAG 59.108 45.833 0.00 0.00 0.00 2.57
8002 13372 4.870636 TCCCTCAACTTCCCGTATTAGTA 58.129 43.478 0.00 0.00 0.00 1.82
8003 13373 3.716431 TCCCTCAACTTCCCGTATTAGT 58.284 45.455 0.00 0.00 0.00 2.24
8004 13374 4.748277 TTCCCTCAACTTCCCGTATTAG 57.252 45.455 0.00 0.00 0.00 1.73
8005 13375 5.502089 TTTTCCCTCAACTTCCCGTATTA 57.498 39.130 0.00 0.00 0.00 0.98
8006 13376 4.376225 TTTTCCCTCAACTTCCCGTATT 57.624 40.909 0.00 0.00 0.00 1.89
8007 13377 4.332828 CTTTTTCCCTCAACTTCCCGTAT 58.667 43.478 0.00 0.00 0.00 3.06
8008 13378 3.497227 CCTTTTTCCCTCAACTTCCCGTA 60.497 47.826 0.00 0.00 0.00 4.02
8009 13379 2.583143 CTTTTTCCCTCAACTTCCCGT 58.417 47.619 0.00 0.00 0.00 5.28
8010 13380 1.886542 CCTTTTTCCCTCAACTTCCCG 59.113 52.381 0.00 0.00 0.00 5.14
8011 13381 3.157881 CTCCTTTTTCCCTCAACTTCCC 58.842 50.000 0.00 0.00 0.00 3.97
8012 13382 3.833732 ACTCCTTTTTCCCTCAACTTCC 58.166 45.455 0.00 0.00 0.00 3.46
8013 13383 6.954487 TTAACTCCTTTTTCCCTCAACTTC 57.046 37.500 0.00 0.00 0.00 3.01
8014 13384 7.914427 ATTTAACTCCTTTTTCCCTCAACTT 57.086 32.000 0.00 0.00 0.00 2.66
8015 13385 8.002459 TGTATTTAACTCCTTTTTCCCTCAACT 58.998 33.333 0.00 0.00 0.00 3.16
8016 13386 8.173542 TGTATTTAACTCCTTTTTCCCTCAAC 57.826 34.615 0.00 0.00 0.00 3.18
8017 13387 8.950007 ATGTATTTAACTCCTTTTTCCCTCAA 57.050 30.769 0.00 0.00 0.00 3.02
8018 13388 8.167392 TGATGTATTTAACTCCTTTTTCCCTCA 58.833 33.333 0.00 0.00 0.00 3.86
8019 13389 8.575649 TGATGTATTTAACTCCTTTTTCCCTC 57.424 34.615 0.00 0.00 0.00 4.30
8020 13390 8.971073 CATGATGTATTTAACTCCTTTTTCCCT 58.029 33.333 0.00 0.00 0.00 4.20
8021 13391 8.966868 TCATGATGTATTTAACTCCTTTTTCCC 58.033 33.333 0.00 0.00 0.00 3.97
8108 13478 2.032377 CCGTGCGACAAGTTGTAACATT 60.032 45.455 8.88 0.00 0.00 2.71
8112 13482 0.931702 CACCGTGCGACAAGTTGTAA 59.068 50.000 8.88 0.00 0.00 2.41
8239 13617 4.915667 GCAAAAGAAAAACTCGTACCCATC 59.084 41.667 0.00 0.00 0.00 3.51
8256 13637 5.395682 TCTCATGGGATTTTCTGCAAAAG 57.604 39.130 0.00 0.00 34.92 2.27
8311 13718 6.183360 CCAATTCGATGATGCATGCAGTATAT 60.183 38.462 26.69 16.15 0.00 0.86
8312 13719 5.122711 CCAATTCGATGATGCATGCAGTATA 59.877 40.000 26.69 12.06 0.00 1.47
8313 13720 4.082949 CCAATTCGATGATGCATGCAGTAT 60.083 41.667 26.69 21.09 0.00 2.12
8314 13721 3.251487 CCAATTCGATGATGCATGCAGTA 59.749 43.478 26.69 17.21 0.00 2.74
8315 13722 2.034179 CCAATTCGATGATGCATGCAGT 59.966 45.455 26.69 14.35 0.00 4.40
8316 13723 2.034179 ACCAATTCGATGATGCATGCAG 59.966 45.455 26.69 12.05 0.00 4.41
8317 13724 2.025898 ACCAATTCGATGATGCATGCA 58.974 42.857 25.04 25.04 0.00 3.96
8318 13725 2.787601 ACCAATTCGATGATGCATGC 57.212 45.000 11.82 11.82 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.