Multiple sequence alignment - TraesCS7D01G382300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G382300 chr7D 100.000 2579 0 0 1 2579 496093577 496096155 0.000000e+00 4763.0
1 TraesCS7D01G382300 chr7B 92.599 1770 88 24 755 2516 524515603 524517337 0.000000e+00 2503.0
2 TraesCS7D01G382300 chr7B 92.000 50 1 2 508 554 677242793 677242842 1.660000e-07 67.6
3 TraesCS7D01G382300 chr7A 92.776 1758 82 17 795 2540 561702652 561704376 0.000000e+00 2501.0
4 TraesCS7D01G382300 chr7A 83.244 561 64 16 1 554 561698579 561699116 2.980000e-134 488.0
5 TraesCS7D01G382300 chr4A 90.789 76 2 2 474 549 4626027 4626097 2.110000e-16 97.1
6 TraesCS7D01G382300 chr2D 87.654 81 4 2 471 551 172409663 172409737 3.530000e-14 89.8
7 TraesCS7D01G382300 chr2A 88.462 78 3 2 474 551 177658409 177658338 3.530000e-14 89.8
8 TraesCS7D01G382300 chr4D 86.420 81 4 4 474 553 192735909 192735983 5.910000e-12 82.4
9 TraesCS7D01G382300 chr4D 82.143 84 6 5 471 552 127555244 127555320 2.140000e-06 63.9
10 TraesCS7D01G382300 chr2B 85.542 83 3 5 474 553 643266089 643266165 7.650000e-11 78.7
11 TraesCS7D01G382300 chr3B 84.211 76 6 2 473 548 486382311 486382242 4.600000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G382300 chr7D 496093577 496096155 2578 False 4763.0 4763 100.000 1 2579 1 chr7D.!!$F1 2578
1 TraesCS7D01G382300 chr7B 524515603 524517337 1734 False 2503.0 2503 92.599 755 2516 1 chr7B.!!$F1 1761
2 TraesCS7D01G382300 chr7A 561698579 561704376 5797 False 1494.5 2501 88.010 1 2540 2 chr7A.!!$F1 2539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 413 0.322975 ACCAAGCACGCTGAGAGAAT 59.677 50.0 0.0 0.0 0.0 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 4927 2.224867 CGGCCATCCATCCCTTATCTTT 60.225 50.0 2.24 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.668457 CGGTTGTCACTGCTCACTTATC 59.332 50.000 0.00 0.00 0.00 1.75
33 34 4.898320 TGTCACTGCTCACTTATCAATGT 58.102 39.130 0.00 0.00 0.00 2.71
45 46 9.212641 CTCACTTATCAATGTTGAAGAAGAAGA 57.787 33.333 19.38 15.92 41.13 2.87
54 55 6.054860 TGTTGAAGAAGAAGAATCCTAGGG 57.945 41.667 9.46 0.00 0.00 3.53
74 75 5.615289 AGGGTAGTGCATGAATGTATCTTC 58.385 41.667 0.00 0.00 0.00 2.87
84 85 6.653183 CATGAATGTATCTTCGTGTCAATCC 58.347 40.000 0.00 0.00 37.37 3.01
88 89 4.916870 TGTATCTTCGTGTCAATCCGTAG 58.083 43.478 0.00 0.00 0.00 3.51
101 102 4.635765 TCAATCCGTAGCAGGAAAATTGAG 59.364 41.667 0.00 0.00 44.50 3.02
104 105 4.755411 TCCGTAGCAGGAAAATTGAGTAG 58.245 43.478 0.00 0.00 37.36 2.57
110 111 5.717119 AGCAGGAAAATTGAGTAGCATTTG 58.283 37.500 0.00 0.00 0.00 2.32
141 144 3.393089 AGTTGCAAGAGACTCGACAAT 57.607 42.857 0.00 0.55 0.00 2.71
142 145 3.321497 AGTTGCAAGAGACTCGACAATC 58.679 45.455 0.00 5.81 0.00 2.67
147 150 3.257393 CAAGAGACTCGACAATCCCTTG 58.743 50.000 0.00 0.00 38.39 3.61
148 151 2.808919 AGAGACTCGACAATCCCTTGA 58.191 47.619 0.00 0.00 36.20 3.02
151 154 4.223923 AGAGACTCGACAATCCCTTGAAAT 59.776 41.667 0.00 0.00 36.20 2.17
152 155 4.256920 AGACTCGACAATCCCTTGAAATG 58.743 43.478 0.00 0.00 36.20 2.32
153 156 4.003648 GACTCGACAATCCCTTGAAATGT 58.996 43.478 0.00 0.00 36.20 2.71
155 158 4.216257 ACTCGACAATCCCTTGAAATGTTG 59.784 41.667 0.00 0.00 36.20 3.33
156 159 4.141287 TCGACAATCCCTTGAAATGTTGT 58.859 39.130 0.00 0.00 36.20 3.32
157 160 4.582656 TCGACAATCCCTTGAAATGTTGTT 59.417 37.500 0.00 0.00 36.20 2.83
158 161 5.765677 TCGACAATCCCTTGAAATGTTGTTA 59.234 36.000 0.00 0.00 36.20 2.41
159 162 6.263392 TCGACAATCCCTTGAAATGTTGTTAA 59.737 34.615 0.00 0.00 36.20 2.01
160 163 7.040062 TCGACAATCCCTTGAAATGTTGTTAAT 60.040 33.333 0.00 0.00 36.20 1.40
161 164 8.240682 CGACAATCCCTTGAAATGTTGTTAATA 58.759 33.333 0.00 0.00 36.20 0.98
162 165 9.921637 GACAATCCCTTGAAATGTTGTTAATAA 57.078 29.630 0.00 0.00 36.20 1.40
163 166 9.705290 ACAATCCCTTGAAATGTTGTTAATAAC 57.295 29.630 8.05 8.05 36.20 1.89
189 192 1.139520 GGATGTTCCCGCATTGCAC 59.860 57.895 9.69 0.00 0.00 4.57
202 205 2.288334 GCATTGCACCTCACATGTCAAA 60.288 45.455 3.15 0.00 0.00 2.69
203 206 3.615592 GCATTGCACCTCACATGTCAAAT 60.616 43.478 3.15 0.00 0.00 2.32
204 207 3.646611 TTGCACCTCACATGTCAAATG 57.353 42.857 0.00 0.00 0.00 2.32
211 214 1.952990 TCACATGTCAAATGCAACGGT 59.047 42.857 0.00 0.00 0.00 4.83
227 230 1.161843 CGGTTTACCTCCGCAAATGT 58.838 50.000 0.00 0.00 41.48 2.71
234 237 1.544246 ACCTCCGCAAATGTTTTAGGC 59.456 47.619 0.00 0.00 0.00 3.93
235 238 1.543802 CCTCCGCAAATGTTTTAGGCA 59.456 47.619 0.00 0.00 0.00 4.75
240 243 3.745458 CCGCAAATGTTTTAGGCACAATT 59.255 39.130 0.00 0.00 0.00 2.32
241 244 4.377226 CCGCAAATGTTTTAGGCACAATTG 60.377 41.667 3.24 3.24 37.86 2.32
287 292 5.652744 ACATTATCGTTTAAGGATGTCGC 57.347 39.130 10.01 0.00 0.00 5.19
298 303 0.729116 GGATGTCGCAGAACACATGG 59.271 55.000 0.00 0.00 39.69 3.66
312 317 4.502105 ACACATGGTGCTATCCATTGTA 57.498 40.909 0.00 0.00 44.75 2.41
339 344 7.573968 AAATGTTTGCTCATATAAGTCTCCC 57.426 36.000 0.00 0.00 0.00 4.30
340 345 5.957771 TGTTTGCTCATATAAGTCTCCCT 57.042 39.130 0.00 0.00 0.00 4.20
341 346 6.313519 TGTTTGCTCATATAAGTCTCCCTT 57.686 37.500 0.00 0.00 37.17 3.95
342 347 6.349300 TGTTTGCTCATATAAGTCTCCCTTC 58.651 40.000 0.00 0.00 34.46 3.46
343 348 5.552870 TTGCTCATATAAGTCTCCCTTCC 57.447 43.478 0.00 0.00 34.46 3.46
344 349 4.820775 TGCTCATATAAGTCTCCCTTCCT 58.179 43.478 0.00 0.00 34.46 3.36
349 354 8.211629 GCTCATATAAGTCTCCCTTCCTTAAAA 58.788 37.037 0.00 0.00 34.46 1.52
358 363 6.151312 GTCTCCCTTCCTTAAAATCTTGTTCC 59.849 42.308 0.00 0.00 0.00 3.62
359 364 5.330233 TCCCTTCCTTAAAATCTTGTTCCC 58.670 41.667 0.00 0.00 0.00 3.97
372 377 1.376037 GTTCCCTGCCTCCAACTCG 60.376 63.158 0.00 0.00 0.00 4.18
374 379 4.785453 CCCTGCCTCCAACTCGGC 62.785 72.222 0.00 0.00 46.46 5.54
405 410 2.031516 CCACCAAGCACGCTGAGAG 61.032 63.158 0.00 0.00 0.00 3.20
408 413 0.322975 ACCAAGCACGCTGAGAGAAT 59.677 50.000 0.00 0.00 0.00 2.40
421 426 4.142513 GCTGAGAGAATCAACCAAACCATC 60.143 45.833 0.00 0.00 37.52 3.51
436 441 6.315393 ACCAAACCATCGTATAATCAACTGTC 59.685 38.462 0.00 0.00 0.00 3.51
437 442 6.315144 CCAAACCATCGTATAATCAACTGTCA 59.685 38.462 0.00 0.00 0.00 3.58
438 443 7.012327 CCAAACCATCGTATAATCAACTGTCAT 59.988 37.037 0.00 0.00 0.00 3.06
439 444 7.482654 AACCATCGTATAATCAACTGTCATG 57.517 36.000 0.00 0.00 0.00 3.07
441 446 5.409520 CCATCGTATAATCAACTGTCATGGG 59.590 44.000 0.00 0.00 0.00 4.00
442 447 5.862678 TCGTATAATCAACTGTCATGGGA 57.137 39.130 0.00 0.00 0.00 4.37
443 448 5.597806 TCGTATAATCAACTGTCATGGGAC 58.402 41.667 0.00 0.00 44.57 4.46
513 518 2.187351 TGAGACGTTTTTGCAGTTGC 57.813 45.000 0.00 0.00 42.50 4.17
554 559 8.065407 TGCAAAAACGTCTTACATTAGTTACTG 58.935 33.333 0.00 0.00 0.00 2.74
560 886 6.702723 ACGTCTTACATTAGTTACTGCAAACA 59.297 34.615 4.19 0.00 0.00 2.83
574 900 9.893305 GTTACTGCAAACATCTTACATTACTTT 57.107 29.630 0.00 0.00 0.00 2.66
589 915 6.743788 ACATTACTTTAGAGAGGGGAGTAGT 58.256 40.000 0.00 0.00 0.00 2.73
591 917 3.888583 ACTTTAGAGAGGGGAGTAGTCG 58.111 50.000 0.00 0.00 0.00 4.18
592 918 3.215975 CTTTAGAGAGGGGAGTAGTCGG 58.784 54.545 0.00 0.00 0.00 4.79
599 925 2.703007 GAGGGGAGTAGTCGGAGTAGTA 59.297 54.545 0.21 0.00 0.00 1.82
600 926 2.705127 AGGGGAGTAGTCGGAGTAGTAG 59.295 54.545 0.21 0.00 0.00 2.57
637 963 7.915397 GTGTAATTAGTACTGAATTTGCATGGG 59.085 37.037 5.39 0.00 33.46 4.00
645 971 4.220602 ACTGAATTTGCATGGGTTAAGACC 59.779 41.667 0.00 0.00 45.75 3.85
647 973 4.462483 TGAATTTGCATGGGTTAAGACCTC 59.538 41.667 0.00 0.00 45.75 3.85
659 985 6.489022 TGGGTTAAGACCTCTTTTTAGCTTTC 59.511 38.462 0.00 0.00 45.75 2.62
681 1007 0.826715 TATCAGGAGAGCTGGTGTGC 59.173 55.000 0.00 0.00 0.00 4.57
691 1017 2.229784 GAGCTGGTGTGCAATTAAAGCT 59.770 45.455 10.82 10.82 41.96 3.74
692 1018 2.029649 AGCTGGTGTGCAATTAAAGCTG 60.030 45.455 10.37 0.65 38.07 4.24
696 1022 5.212532 TGGTGTGCAATTAAAGCTGAATT 57.787 34.783 0.00 0.00 0.00 2.17
697 1023 5.609423 TGGTGTGCAATTAAAGCTGAATTT 58.391 33.333 4.49 0.00 0.00 1.82
698 1024 5.466058 TGGTGTGCAATTAAAGCTGAATTTG 59.534 36.000 4.49 2.58 0.00 2.32
701 1027 7.170658 GGTGTGCAATTAAAGCTGAATTTGTAA 59.829 33.333 4.49 0.00 0.00 2.41
712 1038 5.934043 AGCTGAATTTGTAAGAATTTTGCCC 59.066 36.000 0.00 0.00 32.77 5.36
719 4000 4.241681 TGTAAGAATTTTGCCCAATTCGC 58.758 39.130 10.50 7.20 44.66 4.70
720 4001 1.994916 AGAATTTTGCCCAATTCGCG 58.005 45.000 0.00 0.00 44.66 5.87
721 4002 0.998669 GAATTTTGCCCAATTCGCGG 59.001 50.000 6.13 0.00 34.31 6.46
722 4003 4.611947 AGAATTTTGCCCAATTCGCGGG 62.612 50.000 6.13 0.00 44.66 6.13
729 4010 1.884928 GCCCAATTCGCGGGGTATTAT 60.885 52.381 17.88 0.00 46.59 1.28
730 4011 2.616001 GCCCAATTCGCGGGGTATTATA 60.616 50.000 17.88 0.00 46.59 0.98
736 4017 6.392354 CAATTCGCGGGGTATTATAGTAGAA 58.608 40.000 6.13 0.00 0.00 2.10
741 4022 6.149474 TCGCGGGGTATTATAGTAGAACTAAC 59.851 42.308 6.13 0.00 33.89 2.34
753 4034 6.839820 AGTAGAACTAACTTTTGGTTGACG 57.160 37.500 0.00 0.00 38.75 4.35
823 4129 6.400568 CACAGAATTTCTATTGGGCACAAAT 58.599 36.000 4.97 0.00 40.55 2.32
824 4130 7.363705 CCACAGAATTTCTATTGGGCACAAATA 60.364 37.037 4.97 0.00 40.55 1.40
825 4131 8.199449 CACAGAATTTCTATTGGGCACAAATAT 58.801 33.333 4.97 0.00 40.55 1.28
826 4132 8.199449 ACAGAATTTCTATTGGGCACAAATATG 58.801 33.333 4.97 0.00 40.55 1.78
827 4133 8.199449 CAGAATTTCTATTGGGCACAAATATGT 58.801 33.333 4.97 0.00 40.55 2.29
828 4134 9.420118 AGAATTTCTATTGGGCACAAATATGTA 57.580 29.630 4.97 0.00 40.55 2.29
829 4135 9.463443 GAATTTCTATTGGGCACAAATATGTAC 57.537 33.333 4.97 0.00 40.55 2.90
830 4136 8.766994 ATTTCTATTGGGCACAAATATGTACT 57.233 30.769 4.97 0.00 40.55 2.73
840 4146 8.129211 GGGCACAAATATGTACTGTAGAATTTC 58.871 37.037 0.00 0.00 37.82 2.17
841 4147 8.129211 GGCACAAATATGTACTGTAGAATTTCC 58.871 37.037 0.00 0.00 37.82 3.13
944 4250 0.401395 CCCCTAGTATCCCCAGCCAA 60.401 60.000 0.00 0.00 0.00 4.52
1020 4326 1.613630 GAAGCACCTCCTCCTCCCA 60.614 63.158 0.00 0.00 0.00 4.37
1080 4386 3.141488 CTCCTCCTCCACGTCCGG 61.141 72.222 0.00 0.00 0.00 5.14
1134 4440 4.681978 GGCAACTCCGGCGACACT 62.682 66.667 9.30 0.00 0.00 3.55
1242 4548 3.692406 GTCAAGACCCGCCTCCGT 61.692 66.667 0.00 0.00 0.00 4.69
1245 4551 2.920912 AAGACCCGCCTCCGTTCA 60.921 61.111 0.00 0.00 0.00 3.18
1306 4612 1.673168 GGTGGAGGTGAAGATGATGC 58.327 55.000 0.00 0.00 0.00 3.91
1428 4734 2.043652 TACGTCGGGGAGAAGGGG 60.044 66.667 0.00 0.00 32.45 4.79
1476 4782 3.511540 CCTACGCCTCCATCTTCATCATA 59.488 47.826 0.00 0.00 0.00 2.15
1602 4908 3.944015 GAGAGCACGTACCTAGGTTTCTA 59.056 47.826 22.11 0.00 0.00 2.10
1621 4927 2.675423 ATAGATAGCGCGGCGGGA 60.675 61.111 28.78 8.11 0.00 5.14
1636 4942 1.420138 GCGGGAAAGATAAGGGATGGA 59.580 52.381 0.00 0.00 0.00 3.41
1739 5052 9.809096 ATTATCGTAGATGGATGAATGTATGTC 57.191 33.333 0.00 0.00 45.12 3.06
1740 5053 6.025749 TCGTAGATGGATGAATGTATGTCC 57.974 41.667 0.00 0.00 0.00 4.02
1741 5054 4.859245 CGTAGATGGATGAATGTATGTCCG 59.141 45.833 0.00 0.00 33.39 4.79
1742 5055 4.963318 AGATGGATGAATGTATGTCCGT 57.037 40.909 0.00 0.00 33.39 4.69
1743 5056 4.635223 AGATGGATGAATGTATGTCCGTG 58.365 43.478 0.00 0.00 33.39 4.94
1745 5058 3.530535 TGGATGAATGTATGTCCGTGTG 58.469 45.455 0.00 0.00 33.39 3.82
1746 5059 3.055458 TGGATGAATGTATGTCCGTGTGT 60.055 43.478 0.00 0.00 33.39 3.72
1747 5060 4.160626 TGGATGAATGTATGTCCGTGTGTA 59.839 41.667 0.00 0.00 33.39 2.90
1748 5061 5.113383 GGATGAATGTATGTCCGTGTGTAA 58.887 41.667 0.00 0.00 0.00 2.41
1752 5072 6.836953 TGAATGTATGTCCGTGTGTAATTTG 58.163 36.000 0.00 0.00 0.00 2.32
1756 5076 3.210232 TGTCCGTGTGTAATTTGGGAA 57.790 42.857 0.00 0.00 0.00 3.97
1800 5120 4.022416 TCCTGAACAATTTACACACCATGC 60.022 41.667 0.00 0.00 0.00 4.06
1815 5135 2.290641 ACCATGCAACTCTGTTTCGTTC 59.709 45.455 0.00 0.00 0.00 3.95
1819 5139 3.202097 TGCAACTCTGTTTCGTTCATGA 58.798 40.909 0.00 0.00 0.00 3.07
1821 5141 3.494626 GCAACTCTGTTTCGTTCATGAGA 59.505 43.478 0.00 0.00 0.00 3.27
1827 5147 8.378172 ACTCTGTTTCGTTCATGAGATTTTTA 57.622 30.769 0.00 0.00 0.00 1.52
1904 5224 6.808829 TGCAACAATTTGAAGTTCAAGATCT 58.191 32.000 17.36 0.00 37.70 2.75
1919 5239 6.940831 TCAAGATCTTGATGTCAACAACAA 57.059 33.333 30.05 7.23 43.90 2.83
1930 5251 4.355437 TGTCAACAACAAATTACCAAGCG 58.645 39.130 0.00 0.00 34.03 4.68
1954 5275 7.078228 CGAACAAAATTCCTAAGAAACTCCTG 58.922 38.462 0.00 0.00 35.09 3.86
1955 5276 7.255139 CGAACAAAATTCCTAAGAAACTCCTGT 60.255 37.037 0.00 0.00 35.09 4.00
1956 5277 7.511959 ACAAAATTCCTAAGAAACTCCTGTC 57.488 36.000 0.00 0.00 35.09 3.51
1957 5278 7.060421 ACAAAATTCCTAAGAAACTCCTGTCA 58.940 34.615 0.00 0.00 35.09 3.58
1958 5279 7.229506 ACAAAATTCCTAAGAAACTCCTGTCAG 59.770 37.037 0.00 0.00 35.09 3.51
1959 5280 6.441088 AATTCCTAAGAAACTCCTGTCAGT 57.559 37.500 0.00 0.00 35.09 3.41
1960 5281 4.873746 TCCTAAGAAACTCCTGTCAGTG 57.126 45.455 0.00 0.00 0.00 3.66
1961 5282 4.480115 TCCTAAGAAACTCCTGTCAGTGA 58.520 43.478 0.00 0.00 0.00 3.41
1962 5283 4.281182 TCCTAAGAAACTCCTGTCAGTGAC 59.719 45.833 16.68 16.68 0.00 3.67
1963 5284 3.477210 AAGAAACTCCTGTCAGTGACC 57.523 47.619 20.43 2.45 0.00 4.02
1964 5285 2.398588 AGAAACTCCTGTCAGTGACCA 58.601 47.619 20.43 7.88 0.00 4.02
1965 5286 2.771943 AGAAACTCCTGTCAGTGACCAA 59.228 45.455 20.43 1.86 0.00 3.67
1966 5287 2.622064 AACTCCTGTCAGTGACCAAC 57.378 50.000 20.43 0.00 0.00 3.77
1967 5288 1.794714 ACTCCTGTCAGTGACCAACT 58.205 50.000 20.43 0.00 40.93 3.16
1982 5303 4.996758 TGACCAACTCATCATAACACACAG 59.003 41.667 0.00 0.00 0.00 3.66
1983 5304 5.221621 TGACCAACTCATCATAACACACAGA 60.222 40.000 0.00 0.00 0.00 3.41
1984 5305 5.240891 ACCAACTCATCATAACACACAGAG 58.759 41.667 0.00 0.00 0.00 3.35
1985 5306 5.221722 ACCAACTCATCATAACACACAGAGT 60.222 40.000 0.00 0.00 36.51 3.24
1986 5307 6.014584 ACCAACTCATCATAACACACAGAGTA 60.015 38.462 0.00 0.00 34.10 2.59
1987 5308 6.873605 CCAACTCATCATAACACACAGAGTAA 59.126 38.462 0.00 0.00 34.10 2.24
1988 5309 7.148573 CCAACTCATCATAACACACAGAGTAAC 60.149 40.741 0.00 0.00 34.10 2.50
1989 5310 6.993079 ACTCATCATAACACACAGAGTAACA 58.007 36.000 0.00 0.00 33.51 2.41
1990 5311 6.868864 ACTCATCATAACACACAGAGTAACAC 59.131 38.462 0.00 0.00 33.51 3.32
1991 5312 6.754193 TCATCATAACACACAGAGTAACACA 58.246 36.000 0.00 0.00 0.00 3.72
2049 5370 1.285373 ACGGTGATCTCCCTACTGAGT 59.715 52.381 8.22 0.00 33.93 3.41
2051 5372 3.142951 CGGTGATCTCCCTACTGAGTAG 58.857 54.545 12.62 12.62 36.04 2.57
2093 5414 2.947652 CAGTTCGGCAATTCAGATGGAT 59.052 45.455 0.00 0.00 0.00 3.41
2228 5550 3.492311 GAGGAGGCCGACGATGAGC 62.492 68.421 0.00 0.00 0.00 4.26
2341 5663 4.941309 GGCCACGTTCGGGTTGGT 62.941 66.667 0.00 0.00 0.00 3.67
2345 5667 1.521906 CACGTTCGGGTTGGTGTCA 60.522 57.895 0.00 0.00 0.00 3.58
2520 5842 3.437428 CATTGCCAAACATACATCGGTG 58.563 45.455 0.00 0.00 0.00 4.94
2531 5854 0.038166 ACATCGGTGGCATTTCAGGT 59.962 50.000 0.00 0.00 0.00 4.00
2540 5863 3.068024 GTGGCATTTCAGGTTCTGACAAA 59.932 43.478 0.00 0.00 40.46 2.83
2541 5864 3.318839 TGGCATTTCAGGTTCTGACAAAG 59.681 43.478 0.00 0.00 40.46 2.77
2542 5865 3.319122 GGCATTTCAGGTTCTGACAAAGT 59.681 43.478 0.00 0.00 40.46 2.66
2543 5866 4.293415 GCATTTCAGGTTCTGACAAAGTG 58.707 43.478 0.00 0.00 40.46 3.16
2544 5867 4.036734 GCATTTCAGGTTCTGACAAAGTGA 59.963 41.667 0.00 0.00 40.46 3.41
2545 5868 5.514279 CATTTCAGGTTCTGACAAAGTGAC 58.486 41.667 0.00 0.00 40.46 3.67
2546 5869 3.904800 TCAGGTTCTGACAAAGTGACA 57.095 42.857 0.00 0.00 35.39 3.58
2547 5870 4.214986 TCAGGTTCTGACAAAGTGACAA 57.785 40.909 0.00 0.00 35.39 3.18
2548 5871 4.780815 TCAGGTTCTGACAAAGTGACAAT 58.219 39.130 0.00 0.00 35.39 2.71
2549 5872 4.816385 TCAGGTTCTGACAAAGTGACAATC 59.184 41.667 0.00 0.00 35.39 2.67
2550 5873 4.818546 CAGGTTCTGACAAAGTGACAATCT 59.181 41.667 0.00 0.00 32.44 2.40
2551 5874 4.818546 AGGTTCTGACAAAGTGACAATCTG 59.181 41.667 0.00 0.00 0.00 2.90
2552 5875 4.816385 GGTTCTGACAAAGTGACAATCTGA 59.184 41.667 0.00 0.00 0.00 3.27
2553 5876 5.277538 GGTTCTGACAAAGTGACAATCTGAC 60.278 44.000 0.00 0.00 0.00 3.51
2554 5877 5.282055 TCTGACAAAGTGACAATCTGACT 57.718 39.130 0.00 0.00 0.00 3.41
2555 5878 5.052481 TCTGACAAAGTGACAATCTGACTG 58.948 41.667 0.00 0.00 0.00 3.51
2556 5879 5.022282 TGACAAAGTGACAATCTGACTGA 57.978 39.130 0.00 0.00 0.00 3.41
2557 5880 5.427378 TGACAAAGTGACAATCTGACTGAA 58.573 37.500 0.00 0.00 0.00 3.02
2558 5881 5.525012 TGACAAAGTGACAATCTGACTGAAG 59.475 40.000 0.00 0.00 0.00 3.02
2559 5882 5.674525 ACAAAGTGACAATCTGACTGAAGA 58.325 37.500 0.00 0.00 0.00 2.87
2560 5883 6.115446 ACAAAGTGACAATCTGACTGAAGAA 58.885 36.000 0.00 0.00 0.00 2.52
2561 5884 6.259608 ACAAAGTGACAATCTGACTGAAGAAG 59.740 38.462 0.00 0.00 0.00 2.85
2562 5885 5.543507 AGTGACAATCTGACTGAAGAAGT 57.456 39.130 0.00 0.00 43.85 3.01
2563 5886 5.295950 AGTGACAATCTGACTGAAGAAGTG 58.704 41.667 0.00 0.00 40.07 3.16
2564 5887 4.450419 GTGACAATCTGACTGAAGAAGTGG 59.550 45.833 0.00 0.00 40.07 4.00
2565 5888 4.344968 TGACAATCTGACTGAAGAAGTGGA 59.655 41.667 0.00 0.00 40.07 4.02
2566 5889 5.163311 TGACAATCTGACTGAAGAAGTGGAA 60.163 40.000 0.00 0.00 40.07 3.53
2567 5890 5.303971 ACAATCTGACTGAAGAAGTGGAAG 58.696 41.667 0.00 0.00 40.07 3.46
2568 5891 5.070981 ACAATCTGACTGAAGAAGTGGAAGA 59.929 40.000 0.00 0.00 40.07 2.87
2569 5892 4.592485 TCTGACTGAAGAAGTGGAAGAC 57.408 45.455 0.00 0.00 40.07 3.01
2570 5893 3.960755 TCTGACTGAAGAAGTGGAAGACA 59.039 43.478 0.00 0.00 40.07 3.41
2571 5894 4.405680 TCTGACTGAAGAAGTGGAAGACAA 59.594 41.667 0.00 0.00 40.07 3.18
2572 5895 4.442706 TGACTGAAGAAGTGGAAGACAAC 58.557 43.478 0.00 0.00 40.07 3.32
2573 5896 3.809905 ACTGAAGAAGTGGAAGACAACC 58.190 45.455 0.00 0.00 37.88 3.77
2574 5897 3.199946 ACTGAAGAAGTGGAAGACAACCA 59.800 43.478 0.00 0.00 37.88 3.67
2575 5898 4.141390 ACTGAAGAAGTGGAAGACAACCAT 60.141 41.667 0.00 0.00 37.88 3.55
2576 5899 4.792068 TGAAGAAGTGGAAGACAACCATT 58.208 39.130 0.00 0.00 39.69 3.16
2577 5900 5.200483 TGAAGAAGTGGAAGACAACCATTT 58.800 37.500 0.00 0.00 39.42 2.32
2578 5901 5.299279 TGAAGAAGTGGAAGACAACCATTTC 59.701 40.000 12.12 12.12 46.90 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.861837 GTGAGCAGTGACAACCGAAG 59.138 55.000 0.00 0.00 0.00 3.79
7 8 2.148916 TAAGTGAGCAGTGACAACCG 57.851 50.000 0.00 0.00 0.00 4.44
18 19 7.369803 TCTTCTTCAACATTGATAAGTGAGC 57.630 36.000 13.03 0.00 37.00 4.26
28 29 7.066766 CCCTAGGATTCTTCTTCTTCAACATTG 59.933 40.741 11.48 0.00 0.00 2.82
33 34 6.960542 ACTACCCTAGGATTCTTCTTCTTCAA 59.039 38.462 11.48 0.00 0.00 2.69
45 46 4.413520 ACATTCATGCACTACCCTAGGATT 59.586 41.667 11.48 0.00 0.00 3.01
48 49 3.845781 ACATTCATGCACTACCCTAGG 57.154 47.619 0.06 0.06 0.00 3.02
54 55 5.520288 ACACGAAGATACATTCATGCACTAC 59.480 40.000 0.00 0.00 0.00 2.73
74 75 0.172578 TCCTGCTACGGATTGACACG 59.827 55.000 0.00 0.00 0.00 4.49
84 85 3.932710 TGCTACTCAATTTTCCTGCTACG 59.067 43.478 0.00 0.00 0.00 3.51
88 89 4.866486 CCAAATGCTACTCAATTTTCCTGC 59.134 41.667 0.00 0.00 0.00 4.85
119 122 4.521130 TTGTCGAGTCTCTTGCAACTAT 57.479 40.909 0.00 0.00 0.00 2.12
129 132 3.594603 TTCAAGGGATTGTCGAGTCTC 57.405 47.619 0.00 0.00 0.00 3.36
131 134 4.003648 ACATTTCAAGGGATTGTCGAGTC 58.996 43.478 0.00 0.00 0.00 3.36
156 159 9.005777 GCGGGAACATCCATATTAAGTTATTAA 57.994 33.333 0.00 0.00 38.64 1.40
157 160 8.158132 TGCGGGAACATCCATATTAAGTTATTA 58.842 33.333 0.00 0.00 38.64 0.98
158 161 7.001674 TGCGGGAACATCCATATTAAGTTATT 58.998 34.615 0.00 0.00 38.64 1.40
159 162 6.539173 TGCGGGAACATCCATATTAAGTTAT 58.461 36.000 0.00 0.00 38.64 1.89
160 163 5.931294 TGCGGGAACATCCATATTAAGTTA 58.069 37.500 0.00 0.00 38.64 2.24
161 164 4.787551 TGCGGGAACATCCATATTAAGTT 58.212 39.130 0.00 0.00 38.64 2.66
162 165 4.431416 TGCGGGAACATCCATATTAAGT 57.569 40.909 0.00 0.00 38.64 2.24
163 166 5.702865 CAATGCGGGAACATCCATATTAAG 58.297 41.667 0.00 0.00 38.64 1.85
172 175 1.139520 GGTGCAATGCGGGAACATC 59.860 57.895 0.00 0.00 0.00 3.06
189 192 2.587956 CGTTGCATTTGACATGTGAGG 58.412 47.619 1.15 0.00 0.00 3.86
202 205 2.849081 CGGAGGTAAACCGTTGCAT 58.151 52.632 0.00 0.00 44.57 3.96
203 206 4.364817 CGGAGGTAAACCGTTGCA 57.635 55.556 0.00 0.00 44.57 4.08
211 214 4.321378 GCCTAAAACATTTGCGGAGGTAAA 60.321 41.667 0.00 0.00 32.23 2.01
260 263 8.974408 CGACATCCTTAAACGATAATGTTATGA 58.026 33.333 0.00 0.00 0.00 2.15
261 264 7.740346 GCGACATCCTTAAACGATAATGTTATG 59.260 37.037 0.00 0.00 0.00 1.90
262 265 7.439955 TGCGACATCCTTAAACGATAATGTTAT 59.560 33.333 0.00 0.00 0.00 1.89
263 266 6.757478 TGCGACATCCTTAAACGATAATGTTA 59.243 34.615 0.00 0.00 0.00 2.41
271 276 2.991190 GTTCTGCGACATCCTTAAACGA 59.009 45.455 0.00 0.00 0.00 3.85
287 292 2.989909 TGGATAGCACCATGTGTTCTG 58.010 47.619 0.00 0.00 35.75 3.02
317 322 6.506538 AGGGAGACTTATATGAGCAAACAT 57.493 37.500 0.00 0.00 0.00 2.71
321 326 5.219739 AGGAAGGGAGACTTATATGAGCAA 58.780 41.667 0.00 0.00 40.21 3.91
329 334 8.615705 ACAAGATTTTAAGGAAGGGAGACTTAT 58.384 33.333 0.00 0.00 40.21 1.73
330 335 7.985589 ACAAGATTTTAAGGAAGGGAGACTTA 58.014 34.615 0.00 0.00 40.21 2.24
332 337 6.455690 ACAAGATTTTAAGGAAGGGAGACT 57.544 37.500 0.00 0.00 0.00 3.24
333 338 6.151312 GGAACAAGATTTTAAGGAAGGGAGAC 59.849 42.308 0.00 0.00 0.00 3.36
334 339 6.246163 GGAACAAGATTTTAAGGAAGGGAGA 58.754 40.000 0.00 0.00 0.00 3.71
336 341 5.075900 AGGGAACAAGATTTTAAGGAAGGGA 59.924 40.000 0.00 0.00 0.00 4.20
337 342 5.185828 CAGGGAACAAGATTTTAAGGAAGGG 59.814 44.000 0.00 0.00 0.00 3.95
338 343 5.336770 GCAGGGAACAAGATTTTAAGGAAGG 60.337 44.000 0.00 0.00 0.00 3.46
339 344 5.336770 GGCAGGGAACAAGATTTTAAGGAAG 60.337 44.000 0.00 0.00 0.00 3.46
340 345 4.526650 GGCAGGGAACAAGATTTTAAGGAA 59.473 41.667 0.00 0.00 0.00 3.36
341 346 4.086457 GGCAGGGAACAAGATTTTAAGGA 58.914 43.478 0.00 0.00 0.00 3.36
342 347 4.089361 AGGCAGGGAACAAGATTTTAAGG 58.911 43.478 0.00 0.00 0.00 2.69
343 348 4.158579 GGAGGCAGGGAACAAGATTTTAAG 59.841 45.833 0.00 0.00 0.00 1.85
344 349 4.086457 GGAGGCAGGGAACAAGATTTTAA 58.914 43.478 0.00 0.00 0.00 1.52
349 354 1.075601 TTGGAGGCAGGGAACAAGAT 58.924 50.000 0.00 0.00 0.00 2.40
352 357 0.110486 GAGTTGGAGGCAGGGAACAA 59.890 55.000 0.00 0.00 0.00 2.83
354 359 1.376037 CGAGTTGGAGGCAGGGAAC 60.376 63.158 0.00 0.00 0.00 3.62
405 410 7.925993 TGATTATACGATGGTTTGGTTGATTC 58.074 34.615 0.00 0.00 0.00 2.52
408 413 6.882140 AGTTGATTATACGATGGTTTGGTTGA 59.118 34.615 0.00 0.00 0.00 3.18
421 426 5.356426 TGTCCCATGACAGTTGATTATACG 58.644 41.667 0.00 0.00 46.40 3.06
474 479 8.784994 CGTCTCATATTAATGTACAGAGGTAGT 58.215 37.037 0.33 0.00 34.50 2.73
518 523 7.968956 TGTAAGACGTTTTTGCAGTTCAAATTA 59.031 29.630 0.00 0.00 43.53 1.40
537 542 8.936864 AGATGTTTGCAGTAACTAATGTAAGAC 58.063 33.333 3.11 0.00 28.64 3.01
560 886 8.068733 ACTCCCCTCTCTAAAGTAATGTAAGAT 58.931 37.037 0.00 0.00 0.00 2.40
574 900 2.048601 CTCCGACTACTCCCCTCTCTA 58.951 57.143 0.00 0.00 0.00 2.43
576 902 0.547553 ACTCCGACTACTCCCCTCTC 59.452 60.000 0.00 0.00 0.00 3.20
580 906 2.437651 ACTACTACTCCGACTACTCCCC 59.562 54.545 0.00 0.00 0.00 4.81
589 915 6.126940 ACACATTACCTAGACTACTACTCCGA 60.127 42.308 0.00 0.00 0.00 4.55
591 917 8.970859 TTACACATTACCTAGACTACTACTCC 57.029 38.462 0.00 0.00 0.00 3.85
619 945 6.151144 GTCTTAACCCATGCAAATTCAGTACT 59.849 38.462 0.00 0.00 0.00 2.73
647 973 8.987890 GCTCTCCTGATATAGAAAGCTAAAAAG 58.012 37.037 0.00 0.00 0.00 2.27
659 985 3.305950 GCACACCAGCTCTCCTGATATAG 60.306 52.174 0.00 0.00 44.64 1.31
665 991 0.322277 ATTGCACACCAGCTCTCCTG 60.322 55.000 0.00 0.00 41.41 3.86
691 1017 8.688747 AATTGGGCAAAATTCTTACAAATTCA 57.311 26.923 0.00 0.00 0.00 2.57
692 1018 7.956943 CGAATTGGGCAAAATTCTTACAAATTC 59.043 33.333 17.51 0.00 42.10 2.17
696 1022 4.688413 GCGAATTGGGCAAAATTCTTACAA 59.312 37.500 17.51 0.00 42.10 2.41
697 1023 4.241681 GCGAATTGGGCAAAATTCTTACA 58.758 39.130 17.51 0.00 42.10 2.41
698 1024 3.303229 CGCGAATTGGGCAAAATTCTTAC 59.697 43.478 17.51 9.56 42.10 2.34
701 1027 1.404047 CCGCGAATTGGGCAAAATTCT 60.404 47.619 8.23 0.00 42.10 2.40
708 1034 2.559922 AATACCCCGCGAATTGGGCA 62.560 55.000 16.97 5.83 46.43 5.36
712 1038 5.957798 TCTACTATAATACCCCGCGAATTG 58.042 41.667 8.23 0.00 0.00 2.32
729 4010 7.715657 TCGTCAACCAAAAGTTAGTTCTACTA 58.284 34.615 0.00 0.00 36.18 1.82
730 4011 6.576185 TCGTCAACCAAAAGTTAGTTCTACT 58.424 36.000 0.00 0.00 36.18 2.57
736 4017 5.878669 AGTCTTTCGTCAACCAAAAGTTAGT 59.121 36.000 0.00 0.00 36.18 2.24
741 4022 5.986004 ACTAGTCTTTCGTCAACCAAAAG 57.014 39.130 0.00 0.00 0.00 2.27
746 4027 5.625921 ACTCTACTAGTCTTTCGTCAACC 57.374 43.478 0.00 0.00 30.33 3.77
748 4029 9.622004 CATTTAACTCTACTAGTCTTTCGTCAA 57.378 33.333 0.00 0.00 37.50 3.18
751 4032 8.242739 GTCCATTTAACTCTACTAGTCTTTCGT 58.757 37.037 0.00 0.00 37.50 3.85
752 4033 7.428761 CGTCCATTTAACTCTACTAGTCTTTCG 59.571 40.741 0.00 0.00 37.50 3.46
753 4034 7.701501 CCGTCCATTTAACTCTACTAGTCTTTC 59.298 40.741 0.00 0.00 37.50 2.62
792 4073 6.377146 GCCCAATAGAAATTCTGTGGAGTTAA 59.623 38.462 21.85 0.00 35.95 2.01
793 4074 5.885912 GCCCAATAGAAATTCTGTGGAGTTA 59.114 40.000 21.85 0.00 35.95 2.24
823 4129 9.802039 ACAAAAAGGGAAATTCTACAGTACATA 57.198 29.630 0.00 0.00 0.00 2.29
824 4130 8.706322 ACAAAAAGGGAAATTCTACAGTACAT 57.294 30.769 0.00 0.00 0.00 2.29
825 4131 8.528044 AACAAAAAGGGAAATTCTACAGTACA 57.472 30.769 0.00 0.00 0.00 2.90
828 4134 8.973182 TGTAAACAAAAAGGGAAATTCTACAGT 58.027 29.630 0.00 0.00 0.00 3.55
829 4135 9.463443 CTGTAAACAAAAAGGGAAATTCTACAG 57.537 33.333 0.00 0.00 0.00 2.74
830 4136 8.973182 ACTGTAAACAAAAAGGGAAATTCTACA 58.027 29.630 0.00 0.00 0.00 2.74
840 4146 2.544903 CCGCCACTGTAAACAAAAAGGG 60.545 50.000 0.00 0.00 0.00 3.95
841 4147 2.100087 ACCGCCACTGTAAACAAAAAGG 59.900 45.455 0.00 0.00 0.00 3.11
852 4158 2.849081 CGGATTAAACCGCCACTGT 58.151 52.632 11.48 0.00 46.20 3.55
944 4250 2.256306 GGTTTGATGATGGGGTTTGGT 58.744 47.619 0.00 0.00 0.00 3.67
1020 4326 3.443479 AGGAGAGGGAGCGGGGAT 61.443 66.667 0.00 0.00 0.00 3.85
1062 4368 3.827898 CGGACGTGGAGGAGGAGC 61.828 72.222 0.00 0.00 0.00 4.70
1194 4500 2.214920 GGAGTTGGTGGACGGAGGT 61.215 63.158 0.00 0.00 0.00 3.85
1242 4548 2.434331 CGGGCCTGGTTCCTTGAA 59.566 61.111 2.57 0.00 0.00 2.69
1586 4892 7.823799 GCTATCTATCTAGAAACCTAGGTACGT 59.176 40.741 16.67 3.30 35.69 3.57
1587 4893 7.010367 CGCTATCTATCTAGAAACCTAGGTACG 59.990 44.444 16.67 2.24 35.69 3.67
1590 4896 5.648960 GCGCTATCTATCTAGAAACCTAGGT 59.351 44.000 9.21 9.21 35.69 3.08
1602 4908 2.701780 CCCGCCGCGCTATCTATCT 61.702 63.158 7.42 0.00 0.00 1.98
1621 4927 2.224867 CGGCCATCCATCCCTTATCTTT 60.225 50.000 2.24 0.00 0.00 2.52
1636 4942 2.806945 TCAATCTTCTTTCCGGCCAT 57.193 45.000 2.24 0.00 0.00 4.40
1730 5043 5.124776 CCCAAATTACACACGGACATACATT 59.875 40.000 0.00 0.00 0.00 2.71
1737 5050 3.143728 AGTTCCCAAATTACACACGGAC 58.856 45.455 0.00 0.00 0.00 4.79
1739 5052 5.239963 ACTTTAGTTCCCAAATTACACACGG 59.760 40.000 0.00 0.00 0.00 4.94
1740 5053 6.308371 ACTTTAGTTCCCAAATTACACACG 57.692 37.500 0.00 0.00 0.00 4.49
1741 5054 8.936070 AAAACTTTAGTTCCCAAATTACACAC 57.064 30.769 0.00 0.00 37.25 3.82
1742 5055 8.750298 TGAAAACTTTAGTTCCCAAATTACACA 58.250 29.630 0.00 0.00 37.25 3.72
1743 5056 9.027129 GTGAAAACTTTAGTTCCCAAATTACAC 57.973 33.333 0.00 0.00 37.25 2.90
1745 5058 7.654520 GGGTGAAAACTTTAGTTCCCAAATTAC 59.345 37.037 10.63 0.00 37.92 1.89
1746 5059 7.565768 AGGGTGAAAACTTTAGTTCCCAAATTA 59.434 33.333 15.55 0.00 39.50 1.40
1747 5060 6.385759 AGGGTGAAAACTTTAGTTCCCAAATT 59.614 34.615 15.55 0.00 39.50 1.82
1748 5061 5.903010 AGGGTGAAAACTTTAGTTCCCAAAT 59.097 36.000 15.55 0.00 39.50 2.32
1752 5072 4.466827 TCAGGGTGAAAACTTTAGTTCCC 58.533 43.478 8.39 8.39 38.15 3.97
1756 5076 6.265422 CAGGAATTCAGGGTGAAAACTTTAGT 59.735 38.462 7.93 0.00 40.12 2.24
1800 5120 5.852738 ATCTCATGAACGAAACAGAGTTG 57.147 39.130 0.00 0.00 0.00 3.16
1827 5147 9.206870 ACATCGAATTTTGCTTTTGACAATAAT 57.793 25.926 0.00 0.00 0.00 1.28
1830 5150 7.481275 AACATCGAATTTTGCTTTTGACAAT 57.519 28.000 0.00 0.00 0.00 2.71
1832 5152 7.993821 TTAACATCGAATTTTGCTTTTGACA 57.006 28.000 0.00 0.00 0.00 3.58
1875 5195 6.146601 TGAACTTCAAATTGTTGCATCAGA 57.853 33.333 0.00 0.00 34.50 3.27
1904 5224 6.478344 GCTTGGTAATTTGTTGTTGACATCAA 59.522 34.615 4.06 4.06 38.26 2.57
1919 5239 6.096673 AGGAATTTTGTTCGCTTGGTAATT 57.903 33.333 0.00 0.00 0.00 1.40
1930 5251 7.941919 ACAGGAGTTTCTTAGGAATTTTGTTC 58.058 34.615 0.00 0.00 0.00 3.18
1954 5275 5.120830 GTGTTATGATGAGTTGGTCACTGAC 59.879 44.000 0.00 0.00 38.28 3.51
1955 5276 5.221621 TGTGTTATGATGAGTTGGTCACTGA 60.222 40.000 0.00 0.00 38.28 3.41
1956 5277 4.996758 TGTGTTATGATGAGTTGGTCACTG 59.003 41.667 0.00 0.00 38.28 3.66
1957 5278 4.997395 GTGTGTTATGATGAGTTGGTCACT 59.003 41.667 0.00 0.00 38.28 3.41
1958 5279 4.754618 TGTGTGTTATGATGAGTTGGTCAC 59.245 41.667 0.00 0.00 38.28 3.67
1959 5280 4.967036 TGTGTGTTATGATGAGTTGGTCA 58.033 39.130 0.00 0.00 40.38 4.02
1960 5281 5.237815 TCTGTGTGTTATGATGAGTTGGTC 58.762 41.667 0.00 0.00 0.00 4.02
1961 5282 5.221722 ACTCTGTGTGTTATGATGAGTTGGT 60.222 40.000 0.00 0.00 30.33 3.67
1962 5283 5.240891 ACTCTGTGTGTTATGATGAGTTGG 58.759 41.667 0.00 0.00 30.33 3.77
1963 5284 7.384932 TGTTACTCTGTGTGTTATGATGAGTTG 59.615 37.037 0.00 0.00 35.36 3.16
1964 5285 7.385205 GTGTTACTCTGTGTGTTATGATGAGTT 59.615 37.037 0.00 0.00 35.36 3.01
1965 5286 6.868864 GTGTTACTCTGTGTGTTATGATGAGT 59.131 38.462 0.00 0.00 37.17 3.41
1966 5287 6.868339 TGTGTTACTCTGTGTGTTATGATGAG 59.132 38.462 0.00 0.00 0.00 2.90
1967 5288 6.645003 GTGTGTTACTCTGTGTGTTATGATGA 59.355 38.462 0.00 0.00 0.00 2.92
1982 5303 6.645003 TCAGAATGTGTACATGTGTGTTACTC 59.355 38.462 9.11 0.00 37.27 2.59
1983 5304 6.521162 TCAGAATGTGTACATGTGTGTTACT 58.479 36.000 9.11 0.00 37.27 2.24
1984 5305 6.779115 TCAGAATGTGTACATGTGTGTTAC 57.221 37.500 9.11 0.00 37.27 2.50
1985 5306 6.989759 AGTTCAGAATGTGTACATGTGTGTTA 59.010 34.615 9.11 0.00 37.27 2.41
1986 5307 5.822519 AGTTCAGAATGTGTACATGTGTGTT 59.177 36.000 9.11 0.00 37.27 3.32
1987 5308 5.368145 AGTTCAGAATGTGTACATGTGTGT 58.632 37.500 9.11 0.00 38.87 3.72
1988 5309 5.929697 AGTTCAGAATGTGTACATGTGTG 57.070 39.130 9.11 0.00 36.56 3.82
1989 5310 6.291377 AGAAGTTCAGAATGTGTACATGTGT 58.709 36.000 9.11 0.00 36.56 3.72
1990 5311 6.128445 GGAGAAGTTCAGAATGTGTACATGTG 60.128 42.308 9.11 0.00 36.56 3.21
1991 5312 5.934625 GGAGAAGTTCAGAATGTGTACATGT 59.065 40.000 2.69 2.69 36.56 3.21
2049 5370 5.590259 TGATCGATGAACTGATCAGTCACTA 59.410 40.000 28.01 14.78 44.41 2.74
2051 5372 4.676546 TGATCGATGAACTGATCAGTCAC 58.323 43.478 28.01 22.99 44.41 3.67
2093 5414 4.939271 TGTTTGTGTAGATCAACTCGTGA 58.061 39.130 0.00 0.00 41.67 4.35
2228 5550 3.033764 ACCACGTACAACAGCGCG 61.034 61.111 0.00 0.00 0.00 6.86
2520 5842 3.319122 ACTTTGTCAGAACCTGAAATGCC 59.681 43.478 0.00 0.00 42.46 4.40
2531 5854 5.525012 CAGTCAGATTGTCACTTTGTCAGAA 59.475 40.000 0.00 0.00 0.00 3.02
2540 5863 5.295950 CACTTCTTCAGTCAGATTGTCACT 58.704 41.667 0.00 0.00 30.92 3.41
2541 5864 4.450419 CCACTTCTTCAGTCAGATTGTCAC 59.550 45.833 0.00 0.00 30.92 3.67
2542 5865 4.344968 TCCACTTCTTCAGTCAGATTGTCA 59.655 41.667 0.00 0.00 30.92 3.58
2543 5866 4.887748 TCCACTTCTTCAGTCAGATTGTC 58.112 43.478 0.00 0.00 30.92 3.18
2544 5867 4.963318 TCCACTTCTTCAGTCAGATTGT 57.037 40.909 0.00 0.00 30.92 2.71
2545 5868 5.407995 GTCTTCCACTTCTTCAGTCAGATTG 59.592 44.000 0.00 0.00 30.92 2.67
2546 5869 5.070981 TGTCTTCCACTTCTTCAGTCAGATT 59.929 40.000 0.00 0.00 30.92 2.40
2547 5870 4.590647 TGTCTTCCACTTCTTCAGTCAGAT 59.409 41.667 0.00 0.00 30.92 2.90
2548 5871 3.960755 TGTCTTCCACTTCTTCAGTCAGA 59.039 43.478 0.00 0.00 30.92 3.27
2549 5872 4.327982 TGTCTTCCACTTCTTCAGTCAG 57.672 45.455 0.00 0.00 30.92 3.51
2550 5873 4.442706 GTTGTCTTCCACTTCTTCAGTCA 58.557 43.478 0.00 0.00 30.92 3.41
2551 5874 3.810386 GGTTGTCTTCCACTTCTTCAGTC 59.190 47.826 0.00 0.00 30.92 3.51
2552 5875 3.199946 TGGTTGTCTTCCACTTCTTCAGT 59.800 43.478 0.00 0.00 35.35 3.41
2553 5876 3.808728 TGGTTGTCTTCCACTTCTTCAG 58.191 45.455 0.00 0.00 0.00 3.02
2554 5877 3.924114 TGGTTGTCTTCCACTTCTTCA 57.076 42.857 0.00 0.00 0.00 3.02
2555 5878 5.763088 GAAATGGTTGTCTTCCACTTCTTC 58.237 41.667 0.00 0.00 37.93 2.87
2556 5879 5.774498 GAAATGGTTGTCTTCCACTTCTT 57.226 39.130 0.00 0.00 37.93 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.