Multiple sequence alignment - TraesCS7D01G382100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G382100 chr7D 100.000 6124 0 0 1 6124 495860510 495854387 0.000000e+00 11310.0
1 TraesCS7D01G382100 chr7D 93.361 241 16 0 2957 3197 176959067 176959307 2.100000e-94 357.0
2 TraesCS7D01G382100 chr7D 91.304 253 20 2 2946 3197 484967474 484967223 1.630000e-90 344.0
3 TraesCS7D01G382100 chr7D 95.349 43 1 1 1722 1764 207241013 207240972 3.960000e-07 67.6
4 TraesCS7D01G382100 chr7D 94.595 37 2 0 3303 3339 506679501 506679537 2.380000e-04 58.4
5 TraesCS7D01G382100 chr7D 90.476 42 1 2 434 472 176452183 176452142 1.100000e-02 52.8
6 TraesCS7D01G382100 chr7B 89.802 1618 103 30 3714 5293 524237295 524235702 0.000000e+00 2017.0
7 TraesCS7D01G382100 chr7B 87.679 1047 54 31 193 1214 524242905 524241909 0.000000e+00 1149.0
8 TraesCS7D01G382100 chr7B 93.386 756 40 5 1412 2158 524241513 524240759 0.000000e+00 1110.0
9 TraesCS7D01G382100 chr7B 89.946 746 56 11 2170 2904 524240706 524239969 0.000000e+00 944.0
10 TraesCS7D01G382100 chr7B 84.953 319 29 11 5681 5988 524235062 524234752 7.710000e-79 305.0
11 TraesCS7D01G382100 chr7B 90.000 210 17 2 5478 5684 524235389 524235181 1.010000e-67 268.0
12 TraesCS7D01G382100 chr7B 86.275 255 15 4 3472 3708 524237593 524237341 6.090000e-65 259.0
13 TraesCS7D01G382100 chr7B 92.350 183 10 3 5293 5471 524235610 524235428 2.190000e-64 257.0
14 TraesCS7D01G382100 chr7B 95.425 153 7 0 1 153 524243058 524242906 1.710000e-60 244.0
15 TraesCS7D01G382100 chr7B 100.000 29 0 0 1252 1280 524241902 524241874 3.000000e-03 54.7
16 TraesCS7D01G382100 chr7A 91.815 1124 60 13 1861 2960 561615592 561614477 0.000000e+00 1537.0
17 TraesCS7D01G382100 chr7A 86.480 1250 99 29 1 1214 561617360 561616145 0.000000e+00 1308.0
18 TraesCS7D01G382100 chr7A 88.477 729 45 17 5257 5949 561611452 561610727 0.000000e+00 845.0
19 TraesCS7D01G382100 chr7A 89.822 619 51 6 3714 4326 561612994 561612382 0.000000e+00 784.0
20 TraesCS7D01G382100 chr7A 84.466 618 58 26 4620 5224 561612043 561611451 5.320000e-160 575.0
21 TraesCS7D01G382100 chr7A 87.435 382 24 6 3345 3708 561613444 561613069 9.490000e-113 418.0
22 TraesCS7D01G382100 chr7A 90.511 274 17 4 4321 4591 561612309 561612042 2.720000e-93 353.0
23 TraesCS7D01G382100 chr7A 93.529 170 9 2 1382 1551 561616081 561615914 1.020000e-62 252.0
24 TraesCS7D01G382100 chr7A 95.775 71 1 2 1252 1322 561616138 561616070 5.020000e-21 113.0
25 TraesCS7D01G382100 chr7A 98.246 57 1 0 6068 6124 561610634 561610578 3.910000e-17 100.0
26 TraesCS7D01G382100 chr7A 88.525 61 4 1 1320 1380 584999823 584999766 3.060000e-08 71.3
27 TraesCS7D01G382100 chr5D 92.562 242 18 0 2957 3198 556772701 556772942 1.260000e-91 348.0
28 TraesCS7D01G382100 chr2D 92.887 239 17 0 2959 3197 444860816 444861054 1.260000e-91 348.0
29 TraesCS7D01G382100 chr2D 94.595 37 2 0 3303 3339 534925497 534925461 2.380000e-04 58.4
30 TraesCS7D01G382100 chr3D 91.085 258 20 3 2942 3197 110402643 110402899 4.540000e-91 346.0
31 TraesCS7D01G382100 chr3D 91.304 253 20 2 2946 3197 282684117 282684368 1.630000e-90 344.0
32 TraesCS7D01G382100 chr1D 91.667 252 18 2 2946 3197 235713230 235712982 4.540000e-91 346.0
33 TraesCS7D01G382100 chr1D 91.566 249 19 2 2957 3203 357277687 357277439 5.880000e-90 342.0
34 TraesCS7D01G382100 chr1D 92.593 54 3 1 1325 1378 140526917 140526969 6.580000e-10 76.8
35 TraesCS7D01G382100 chr1D 97.561 41 1 0 1726 1766 337898607 337898647 3.060000e-08 71.3
36 TraesCS7D01G382100 chr1D 95.122 41 2 0 1726 1766 276502884 276502924 1.420000e-06 65.8
37 TraesCS7D01G382100 chr6D 91.566 249 18 3 2957 3203 107696818 107696571 2.110000e-89 340.0
38 TraesCS7D01G382100 chr6D 97.297 37 1 0 3303 3339 140086907 140086943 5.120000e-06 63.9
39 TraesCS7D01G382100 chr3B 96.296 54 2 0 1325 1378 684085415 684085468 8.450000e-14 89.8
40 TraesCS7D01G382100 chr3B 91.525 59 2 2 1324 1381 779541681 779541737 1.830000e-10 78.7
41 TraesCS7D01G382100 chr3B 89.655 58 3 3 1323 1380 814532809 814532755 3.060000e-08 71.3
42 TraesCS7D01G382100 chr3B 88.136 59 5 2 1319 1377 237606559 237606615 1.100000e-07 69.4
43 TraesCS7D01G382100 chr6B 97.674 43 1 0 1724 1766 171703708 171703750 2.370000e-09 75.0
44 TraesCS7D01G382100 chr6B 90.741 54 5 0 1324 1377 337867165 337867218 8.510000e-09 73.1
45 TraesCS7D01G382100 chr6B 94.595 37 2 0 3303 3339 558743745 558743781 2.380000e-04 58.4
46 TraesCS7D01G382100 chr6B 94.595 37 2 0 3303 3339 558904649 558904685 2.380000e-04 58.4
47 TraesCS7D01G382100 chr3A 92.308 52 2 2 1326 1377 730856239 730856288 8.510000e-09 73.1
48 TraesCS7D01G382100 chr3A 94.737 38 2 0 3301 3338 100883970 100884007 6.630000e-05 60.2
49 TraesCS7D01G382100 chrUn 89.474 57 4 2 1324 1380 79677562 79677508 3.060000e-08 71.3
50 TraesCS7D01G382100 chr4A 97.561 41 1 0 1726 1766 32064568 32064528 3.060000e-08 71.3
51 TraesCS7D01G382100 chr2A 97.561 41 1 0 1726 1766 703973955 703973995 3.060000e-08 71.3
52 TraesCS7D01G382100 chr2A 94.595 37 2 0 3303 3339 3793075 3793111 2.380000e-04 58.4
53 TraesCS7D01G382100 chr1B 97.561 41 1 0 1726 1766 375805877 375805917 3.060000e-08 71.3
54 TraesCS7D01G382100 chr1A 97.561 41 1 0 1726 1766 348694174 348694214 3.060000e-08 71.3
55 TraesCS7D01G382100 chr4B 94.872 39 2 0 3301 3339 66469277 66469315 1.840000e-05 62.1
56 TraesCS7D01G382100 chr5B 92.500 40 3 0 3304 3343 712433521 712433482 2.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G382100 chr7D 495854387 495860510 6123 True 11310.00 11310 100.0000 1 6124 1 chr7D.!!$R4 6123
1 TraesCS7D01G382100 chr7B 524234752 524243058 8306 True 660.77 2017 90.9816 1 5988 10 chr7B.!!$R1 5987
2 TraesCS7D01G382100 chr7A 561610578 561617360 6782 True 628.50 1537 90.6556 1 6124 10 chr7A.!!$R2 6123

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 852 0.108774 GGATCGATCCCTCCCAAACC 59.891 60.0 30.80 4.94 41.20 3.27 F
1250 1295 0.109532 TCGTTCAGGTTGAATGGGCA 59.890 50.0 10.23 0.00 42.18 5.36 F
1357 1402 0.471401 GAGTATAACCCCCGGCCTCT 60.471 60.0 0.00 0.00 0.00 3.69 F
1582 1917 0.604578 ACATTTGGCAAGAGCGCATT 59.395 45.0 11.47 0.00 43.41 3.56 F
2975 3437 0.998145 AGTACTACCTCCGTCCTGGT 59.002 55.0 0.00 0.00 39.52 4.00 F
3786 7394 0.582005 GTGTCAGTGGCAAGTTCGTC 59.418 55.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2593 0.030638 ACAAATCCTTGCGTGTGTGC 59.969 50.000 0.0 0.0 35.84 4.57 R
2967 3429 1.003812 TGGGACCAATAAACCAGGACG 59.996 52.381 0.0 0.0 0.00 4.79 R
3151 3613 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.0 0.0 0.00 4.92 R
3180 3642 1.068741 GCAATACTACCTCCGTCCTGG 59.931 57.143 0.0 0.0 40.09 4.45 R
4635 8331 0.178767 TGGAAGCATCTGATCCACGG 59.821 55.000 0.0 0.0 38.30 4.94 R
5198 8929 0.302288 GTTTACAACAGTGTGCGCGA 59.698 50.000 12.1 0.0 38.82 5.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.537728 AGAATCACTATTGAAATTAATGCCCA 57.462 30.769 0.00 0.00 34.61 5.36
141 142 1.343142 ACTCATGGTACGACAAGCACA 59.657 47.619 0.00 0.00 0.00 4.57
153 154 2.227388 GACAAGCACAAGAACTCATGGG 59.773 50.000 0.00 0.00 0.00 4.00
154 155 1.542915 CAAGCACAAGAACTCATGGGG 59.457 52.381 0.00 0.00 0.00 4.96
170 176 7.283329 ACTCATGGGGTAGTTAAGATGATTTC 58.717 38.462 0.00 0.00 0.00 2.17
215 221 3.441101 ACAGAGGTTGGTGCTACTATGA 58.559 45.455 0.00 0.00 0.00 2.15
460 487 1.303317 ATCGGCACCTCCCAACAAC 60.303 57.895 0.00 0.00 0.00 3.32
539 566 8.817100 CATCACCAATTCTCATTCATTTGATTG 58.183 33.333 0.00 0.00 0.00 2.67
542 569 9.378551 CACCAATTCTCATTCATTTGATTGATT 57.621 29.630 5.81 0.00 34.95 2.57
587 617 4.708726 AATGTTTGCTATTGTCCTGAGC 57.291 40.909 0.00 0.00 36.72 4.26
605 635 3.032609 GGCGTCGGATGCAGATCG 61.033 66.667 22.56 1.12 0.00 3.69
719 756 3.420839 AAAAACACGAAGCCAGACAAG 57.579 42.857 0.00 0.00 0.00 3.16
727 764 2.598394 GCCAGACAAGCAGGCCAA 60.598 61.111 5.01 0.00 42.94 4.52
728 765 2.633509 GCCAGACAAGCAGGCCAAG 61.634 63.158 5.01 0.00 42.94 3.61
814 851 3.708013 GGATCGATCCCTCCCAAAC 57.292 57.895 30.80 5.03 41.20 2.93
815 852 0.108774 GGATCGATCCCTCCCAAACC 59.891 60.000 30.80 4.94 41.20 3.27
816 853 1.132500 GATCGATCCCTCCCAAACCT 58.868 55.000 14.76 0.00 0.00 3.50
840 880 3.585990 GCGCGCCCGGTAGTAGTA 61.586 66.667 23.24 0.00 34.32 1.82
841 881 3.110139 CGCGCCCGGTAGTAGTAA 58.890 61.111 0.00 0.00 0.00 2.24
842 882 1.433064 CGCGCCCGGTAGTAGTAAA 59.567 57.895 0.00 0.00 0.00 2.01
846 886 0.528466 GCCCGGTAGTAGTAAACGCC 60.528 60.000 0.00 0.00 0.00 5.68
866 906 1.221840 CATCTGCGCTTACTGGGGT 59.778 57.895 9.73 0.00 0.00 4.95
871 911 4.832608 CGCTTACTGGGGTCCCGC 62.833 72.222 0.48 0.00 39.42 6.13
901 941 3.220658 CGCGTGGGGGTTTGGTTT 61.221 61.111 0.00 0.00 0.00 3.27
903 943 3.133946 CGTGGGGGTTTGGTTTGG 58.866 61.111 0.00 0.00 0.00 3.28
905 945 1.331399 CGTGGGGGTTTGGTTTGGTT 61.331 55.000 0.00 0.00 0.00 3.67
906 946 0.913205 GTGGGGGTTTGGTTTGGTTT 59.087 50.000 0.00 0.00 0.00 3.27
907 947 0.912486 TGGGGGTTTGGTTTGGTTTG 59.088 50.000 0.00 0.00 0.00 2.93
908 948 0.181587 GGGGGTTTGGTTTGGTTTGG 59.818 55.000 0.00 0.00 0.00 3.28
909 949 0.181587 GGGGTTTGGTTTGGTTTGGG 59.818 55.000 0.00 0.00 0.00 4.12
910 950 0.464735 GGGTTTGGTTTGGTTTGGGC 60.465 55.000 0.00 0.00 0.00 5.36
990 1035 0.471401 GGGGCTACTAGATTCCCGGT 60.471 60.000 0.00 0.00 39.66 5.28
991 1036 0.680061 GGGCTACTAGATTCCCGGTG 59.320 60.000 0.00 0.00 0.00 4.94
1097 1142 5.652891 AGTAAGCTCGACTGATTTCCTTCTA 59.347 40.000 0.55 0.00 0.00 2.10
1103 1148 6.200097 GCTCGACTGATTTCCTTCTATTTCTC 59.800 42.308 0.00 0.00 0.00 2.87
1105 1150 7.484975 TCGACTGATTTCCTTCTATTTCTCTC 58.515 38.462 0.00 0.00 0.00 3.20
1113 1158 8.519799 TTTCCTTCTATTTCTCTCTCTCTCTC 57.480 38.462 0.00 0.00 0.00 3.20
1127 1172 9.304731 CTCTCTCTCTCTCTATGTTTGAATTTG 57.695 37.037 0.00 0.00 0.00 2.32
1128 1173 7.763528 TCTCTCTCTCTCTATGTTTGAATTTGC 59.236 37.037 0.00 0.00 0.00 3.68
1129 1174 7.389232 TCTCTCTCTCTATGTTTGAATTTGCA 58.611 34.615 0.00 0.00 0.00 4.08
1132 1177 6.902341 TCTCTCTATGTTTGAATTTGCACAC 58.098 36.000 0.00 0.00 0.00 3.82
1142 1187 0.168788 ATTTGCACACGCTTCGATGG 59.831 50.000 0.00 0.00 39.64 3.51
1163 1208 1.289231 AGTGCCCAGTAGATCTCCTCA 59.711 52.381 0.00 0.00 0.00 3.86
1167 1212 3.141083 TGCCCAGTAGATCTCCTCAGTAT 59.859 47.826 0.00 0.00 0.00 2.12
1189 1234 1.268032 GCTGTTGATTTCGCGTATGGG 60.268 52.381 5.77 0.00 0.00 4.00
1191 1236 0.661020 GTTGATTTCGCGTATGGGGG 59.339 55.000 5.77 0.00 0.00 5.40
1214 1259 2.427506 GGATTGTTGACCTGTGGAGAC 58.572 52.381 0.00 0.00 0.00 3.36
1215 1260 2.039084 GGATTGTTGACCTGTGGAGACT 59.961 50.000 0.00 0.00 0.00 3.24
1216 1261 2.620251 TTGTTGACCTGTGGAGACTG 57.380 50.000 0.00 0.00 0.00 3.51
1217 1262 0.758734 TGTTGACCTGTGGAGACTGG 59.241 55.000 0.00 0.00 44.78 4.00
1218 1263 1.048601 GTTGACCTGTGGAGACTGGA 58.951 55.000 5.24 0.00 42.49 3.86
1219 1264 1.001406 GTTGACCTGTGGAGACTGGAG 59.999 57.143 5.24 0.00 42.49 3.86
1220 1265 0.482887 TGACCTGTGGAGACTGGAGA 59.517 55.000 5.24 0.00 42.49 3.71
1221 1266 1.133167 TGACCTGTGGAGACTGGAGAA 60.133 52.381 5.24 0.00 42.49 2.87
1222 1267 1.548269 GACCTGTGGAGACTGGAGAAG 59.452 57.143 5.24 0.00 42.49 2.85
1223 1268 1.148027 ACCTGTGGAGACTGGAGAAGA 59.852 52.381 5.24 0.00 42.49 2.87
1224 1269 1.824230 CCTGTGGAGACTGGAGAAGAG 59.176 57.143 0.00 0.00 42.49 2.85
1225 1270 1.204467 CTGTGGAGACTGGAGAAGAGC 59.796 57.143 0.00 0.00 0.00 4.09
1226 1271 0.172352 GTGGAGACTGGAGAAGAGCG 59.828 60.000 0.00 0.00 0.00 5.03
1227 1272 0.251386 TGGAGACTGGAGAAGAGCGT 60.251 55.000 0.00 0.00 0.00 5.07
1228 1273 0.892063 GGAGACTGGAGAAGAGCGTT 59.108 55.000 0.00 0.00 0.00 4.84
1229 1274 1.135228 GGAGACTGGAGAAGAGCGTTC 60.135 57.143 0.00 0.00 0.00 3.95
1230 1275 0.523966 AGACTGGAGAAGAGCGTTCG 59.476 55.000 0.00 0.00 0.00 3.95
1231 1276 0.241481 GACTGGAGAAGAGCGTTCGT 59.759 55.000 0.00 0.00 0.00 3.85
1232 1277 0.241481 ACTGGAGAAGAGCGTTCGTC 59.759 55.000 7.09 7.09 32.73 4.20
1233 1278 0.794981 CTGGAGAAGAGCGTTCGTCG 60.795 60.000 9.30 0.00 36.98 5.12
1234 1279 1.209640 GGAGAAGAGCGTTCGTCGT 59.790 57.895 9.30 0.00 42.13 4.34
1235 1280 0.386985 GGAGAAGAGCGTTCGTCGTT 60.387 55.000 9.30 0.00 42.13 3.85
1239 1284 3.449042 GAGCGTTCGTCGTTCAGG 58.551 61.111 12.30 0.00 46.28 3.86
1240 1285 1.371389 GAGCGTTCGTCGTTCAGGT 60.371 57.895 12.30 0.00 46.28 4.00
1241 1286 0.938168 GAGCGTTCGTCGTTCAGGTT 60.938 55.000 12.30 0.00 46.28 3.50
1242 1287 1.200839 GCGTTCGTCGTTCAGGTTG 59.799 57.895 0.00 0.00 42.13 3.77
1243 1288 1.210545 GCGTTCGTCGTTCAGGTTGA 61.211 55.000 0.00 0.00 42.13 3.18
1244 1289 1.202203 CGTTCGTCGTTCAGGTTGAA 58.798 50.000 0.00 0.00 33.32 2.69
1245 1290 1.790623 CGTTCGTCGTTCAGGTTGAAT 59.209 47.619 0.00 0.00 38.79 2.57
1246 1291 2.409752 CGTTCGTCGTTCAGGTTGAATG 60.410 50.000 4.96 4.96 43.01 2.67
1247 1292 1.790755 TCGTCGTTCAGGTTGAATGG 58.209 50.000 10.23 0.43 42.18 3.16
1250 1295 0.109532 TCGTTCAGGTTGAATGGGCA 59.890 50.000 10.23 0.00 42.18 5.36
1308 1353 9.570488 GTAGTATAATGCGACTAAGAAATAGGG 57.430 37.037 0.00 0.00 35.81 3.53
1309 1354 7.612677 AGTATAATGCGACTAAGAAATAGGGG 58.387 38.462 0.00 0.00 35.81 4.79
1310 1355 3.771577 ATGCGACTAAGAAATAGGGGG 57.228 47.619 0.00 0.00 35.81 5.40
1311 1356 2.474112 TGCGACTAAGAAATAGGGGGT 58.526 47.619 0.00 0.00 35.81 4.95
1312 1357 2.169769 TGCGACTAAGAAATAGGGGGTG 59.830 50.000 0.00 0.00 35.81 4.61
1313 1358 2.484947 GCGACTAAGAAATAGGGGGTGG 60.485 54.545 0.00 0.00 35.81 4.61
1314 1359 3.036091 CGACTAAGAAATAGGGGGTGGA 58.964 50.000 0.00 0.00 35.81 4.02
1315 1360 3.646637 CGACTAAGAAATAGGGGGTGGAT 59.353 47.826 0.00 0.00 35.81 3.41
1316 1361 4.102681 CGACTAAGAAATAGGGGGTGGATT 59.897 45.833 0.00 0.00 35.81 3.01
1317 1362 5.377478 GACTAAGAAATAGGGGGTGGATTG 58.623 45.833 0.00 0.00 35.81 2.67
1318 1363 5.043762 ACTAAGAAATAGGGGGTGGATTGA 58.956 41.667 0.00 0.00 35.81 2.57
1319 1364 5.676811 ACTAAGAAATAGGGGGTGGATTGAT 59.323 40.000 0.00 0.00 35.81 2.57
1320 1365 5.487861 AAGAAATAGGGGGTGGATTGATT 57.512 39.130 0.00 0.00 0.00 2.57
1321 1366 4.808042 AGAAATAGGGGGTGGATTGATTG 58.192 43.478 0.00 0.00 0.00 2.67
1322 1367 4.482025 AGAAATAGGGGGTGGATTGATTGA 59.518 41.667 0.00 0.00 0.00 2.57
1323 1368 5.136737 AGAAATAGGGGGTGGATTGATTGAT 59.863 40.000 0.00 0.00 0.00 2.57
1324 1369 5.423266 AATAGGGGGTGGATTGATTGATT 57.577 39.130 0.00 0.00 0.00 2.57
1325 1370 3.782413 AGGGGGTGGATTGATTGATTT 57.218 42.857 0.00 0.00 0.00 2.17
1326 1371 4.078932 AGGGGGTGGATTGATTGATTTT 57.921 40.909 0.00 0.00 0.00 1.82
1327 1372 4.437967 AGGGGGTGGATTGATTGATTTTT 58.562 39.130 0.00 0.00 0.00 1.94
1349 1394 6.921486 TTTTTGGAAAAGGAGTATAACCCC 57.079 37.500 0.00 0.00 0.00 4.95
1350 1395 4.596354 TTGGAAAAGGAGTATAACCCCC 57.404 45.455 0.00 0.00 0.00 5.40
1351 1396 2.506644 TGGAAAAGGAGTATAACCCCCG 59.493 50.000 0.00 0.00 0.00 5.73
1352 1397 2.158711 GGAAAAGGAGTATAACCCCCGG 60.159 54.545 0.00 0.00 0.00 5.73
1353 1398 0.841961 AAAGGAGTATAACCCCCGGC 59.158 55.000 0.00 0.00 0.00 6.13
1354 1399 1.058428 AAGGAGTATAACCCCCGGCC 61.058 60.000 0.00 0.00 0.00 6.13
1355 1400 1.460882 GGAGTATAACCCCCGGCCT 60.461 63.158 0.00 0.00 0.00 5.19
1356 1401 1.478526 GGAGTATAACCCCCGGCCTC 61.479 65.000 0.00 0.00 0.00 4.70
1357 1402 0.471401 GAGTATAACCCCCGGCCTCT 60.471 60.000 0.00 0.00 0.00 3.69
1358 1403 0.763223 AGTATAACCCCCGGCCTCTG 60.763 60.000 0.00 0.00 0.00 3.35
1359 1404 2.144738 TATAACCCCCGGCCTCTGC 61.145 63.158 0.00 0.00 0.00 4.26
1360 1405 2.900269 TATAACCCCCGGCCTCTGCA 62.900 60.000 0.00 0.00 40.13 4.41
1364 1409 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
1393 1438 3.628942 GCATACAGCAGTGGATTGATTGA 59.371 43.478 0.00 0.00 44.79 2.57
1397 1442 2.361119 CAGCAGTGGATTGATTGATGGG 59.639 50.000 0.00 0.00 0.00 4.00
1506 1780 1.929836 GAGCTTACTGACAAGATGCGG 59.070 52.381 0.00 0.00 0.00 5.69
1582 1917 0.604578 ACATTTGGCAAGAGCGCATT 59.395 45.000 11.47 0.00 43.41 3.56
1678 2016 5.390040 CCAAATATGTTTGTTGCAGTGCATG 60.390 40.000 20.50 9.23 42.50 4.06
1680 2018 8.731614 CAAATATGTTTGTTGCAGTGCATGCC 62.732 42.308 20.50 10.63 45.24 4.40
1746 2084 2.163613 CCCTCCGTTCCAAAATAAGTGC 59.836 50.000 0.00 0.00 0.00 4.40
1766 2104 5.299782 AGTGCCGTGGTTTTAGTTCAAATTA 59.700 36.000 0.00 0.00 0.00 1.40
1767 2105 6.015772 AGTGCCGTGGTTTTAGTTCAAATTAT 60.016 34.615 0.00 0.00 0.00 1.28
1769 2107 7.483691 GTGCCGTGGTTTTAGTTCAAATTATAG 59.516 37.037 0.00 0.00 0.00 1.31
1770 2108 6.970613 GCCGTGGTTTTAGTTCAAATTATAGG 59.029 38.462 0.00 0.00 0.00 2.57
1771 2109 6.970613 CCGTGGTTTTAGTTCAAATTATAGGC 59.029 38.462 0.00 0.00 0.00 3.93
1772 2110 7.148137 CCGTGGTTTTAGTTCAAATTATAGGCT 60.148 37.037 0.00 0.00 0.00 4.58
1773 2111 8.241367 CGTGGTTTTAGTTCAAATTATAGGCTT 58.759 33.333 0.00 0.00 0.00 4.35
1930 2321 1.363744 GAGTTGTCAAGGATGAGGCG 58.636 55.000 0.00 0.00 35.88 5.52
1994 2385 1.615883 AGCAGTCACTGGTACTGTCAG 59.384 52.381 8.02 0.00 45.01 3.51
2012 2403 3.290776 GGGAAACTCATCGATCCCG 57.709 57.895 3.81 0.00 41.99 5.14
2034 2425 7.666388 TCCCGACAATTTCTTTATAAACCTTGA 59.334 33.333 0.00 0.00 0.00 3.02
2142 2534 6.665992 AACAGTGAGTTTGTACCTATCTCA 57.334 37.500 0.00 0.00 37.03 3.27
2160 2593 8.815189 CCTATCTCATAATGTCATTTCGCTATG 58.185 37.037 2.79 1.44 0.00 2.23
2164 2597 5.526846 TCATAATGTCATTTCGCTATGCACA 59.473 36.000 2.79 0.00 0.00 4.57
2166 2599 2.421619 TGTCATTTCGCTATGCACACA 58.578 42.857 0.00 0.00 0.00 3.72
2168 2601 1.393196 TCATTTCGCTATGCACACACG 59.607 47.619 0.00 0.00 0.00 4.49
2181 2614 1.333308 CACACACGCAAGGATTTGTCA 59.667 47.619 0.00 0.00 46.39 3.58
2237 2678 9.778741 AATCGCTCATAAACTTGAAGGAATATA 57.221 29.630 0.00 0.00 0.00 0.86
2276 2717 9.465199 TGGTAACATCCCATGATCATATAAATG 57.535 33.333 8.15 11.80 46.17 2.32
2304 2745 4.338012 TGGATTTCAGACATGCAAGTGAT 58.662 39.130 0.00 0.00 0.00 3.06
2441 2882 5.748402 TGTGATAGCATCATTCCTTTCAGT 58.252 37.500 2.80 0.00 42.04 3.41
2481 2922 5.924475 TTCCTTCTTTTCTACGCTGAAAG 57.076 39.130 4.12 0.00 37.27 2.62
2548 2990 6.174720 TCCAGTGTGGATTTGTATATCTCC 57.825 41.667 0.00 0.00 42.67 3.71
2553 2995 8.811017 CAGTGTGGATTTGTATATCTCCTAGAT 58.189 37.037 0.00 0.00 38.70 1.98
2650 3092 4.498894 AATGGATGAGACTGATCAAGCA 57.501 40.909 4.23 0.00 31.76 3.91
2730 3172 3.746492 CAGTAGTTCAGCCTTGTTGGTAC 59.254 47.826 0.00 0.00 38.35 3.34
2754 3196 3.509575 TGTTCATGTTGGGGCTGTAAATC 59.490 43.478 0.00 0.00 0.00 2.17
2766 3208 3.617263 GGCTGTAAATCTGAGTTACACGG 59.383 47.826 22.39 16.21 36.71 4.94
2863 3306 7.587629 TGAGCTATCAAATGTGAAAACTCTTG 58.412 34.615 11.53 0.00 37.30 3.02
2969 3431 5.102953 TGTGTATACAGTACTACCTCCGT 57.897 43.478 5.62 0.00 31.91 4.69
2970 3432 5.118990 TGTGTATACAGTACTACCTCCGTC 58.881 45.833 5.62 0.00 31.91 4.79
2971 3433 4.513318 GTGTATACAGTACTACCTCCGTCC 59.487 50.000 5.62 0.00 0.00 4.79
2972 3434 4.410228 TGTATACAGTACTACCTCCGTCCT 59.590 45.833 0.08 0.00 0.00 3.85
2973 3435 2.125773 ACAGTACTACCTCCGTCCTG 57.874 55.000 0.00 0.00 0.00 3.86
2974 3436 1.340795 ACAGTACTACCTCCGTCCTGG 60.341 57.143 0.00 0.00 40.09 4.45
2975 3437 0.998145 AGTACTACCTCCGTCCTGGT 59.002 55.000 0.00 0.00 39.52 4.00
2976 3438 1.357079 AGTACTACCTCCGTCCTGGTT 59.643 52.381 0.00 0.00 39.52 3.67
2977 3439 2.174360 GTACTACCTCCGTCCTGGTTT 58.826 52.381 0.00 0.00 39.52 3.27
2978 3440 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
2979 3441 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
2980 3442 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
2981 3443 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
2982 3444 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
2983 3445 1.280998 CCTCCGTCCTGGTTTATTGGT 59.719 52.381 0.00 0.00 39.52 3.67
2984 3446 2.629051 CTCCGTCCTGGTTTATTGGTC 58.371 52.381 0.00 0.00 39.52 4.02
2985 3447 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
2986 3448 1.680860 CCGTCCTGGTTTATTGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
2987 3449 1.003812 CGTCCTGGTTTATTGGTCCCA 59.996 52.381 0.00 0.00 0.00 4.37
2988 3450 2.356741 CGTCCTGGTTTATTGGTCCCAT 60.357 50.000 0.00 0.00 0.00 4.00
2989 3451 3.708451 GTCCTGGTTTATTGGTCCCATT 58.292 45.455 0.00 0.00 0.00 3.16
2990 3452 4.093743 GTCCTGGTTTATTGGTCCCATTT 58.906 43.478 0.00 0.00 0.00 2.32
2991 3453 5.265989 GTCCTGGTTTATTGGTCCCATTTA 58.734 41.667 0.00 0.00 0.00 1.40
2992 3454 5.897250 GTCCTGGTTTATTGGTCCCATTTAT 59.103 40.000 0.00 0.00 0.00 1.40
2993 3455 7.064229 GTCCTGGTTTATTGGTCCCATTTATA 58.936 38.462 0.00 0.00 0.00 0.98
2994 3456 7.562088 GTCCTGGTTTATTGGTCCCATTTATAA 59.438 37.037 0.00 0.00 0.00 0.98
2995 3457 8.293216 TCCTGGTTTATTGGTCCCATTTATAAT 58.707 33.333 0.00 0.00 0.00 1.28
2996 3458 8.933653 CCTGGTTTATTGGTCCCATTTATAATT 58.066 33.333 0.00 0.00 0.00 1.40
3001 3463 9.606631 TTTATTGGTCCCATTTATAATTTGTGC 57.393 29.630 0.00 0.00 0.00 4.57
3002 3464 5.606348 TGGTCCCATTTATAATTTGTGCC 57.394 39.130 0.00 0.00 0.00 5.01
3003 3465 5.026121 TGGTCCCATTTATAATTTGTGCCA 58.974 37.500 0.00 0.00 0.00 4.92
3004 3466 5.485353 TGGTCCCATTTATAATTTGTGCCAA 59.515 36.000 0.00 0.00 0.00 4.52
3005 3467 6.013379 TGGTCCCATTTATAATTTGTGCCAAA 60.013 34.615 3.33 3.33 0.00 3.28
3006 3468 7.053498 GGTCCCATTTATAATTTGTGCCAAAT 58.947 34.615 7.18 7.18 0.00 2.32
3007 3469 7.555914 GGTCCCATTTATAATTTGTGCCAAATT 59.444 33.333 21.60 21.60 34.55 1.82
3008 3470 8.955388 GTCCCATTTATAATTTGTGCCAAATTT 58.045 29.630 22.50 15.58 32.64 1.82
3009 3471 9.525826 TCCCATTTATAATTTGTGCCAAATTTT 57.474 25.926 22.50 18.62 32.64 1.82
3010 3472 9.570488 CCCATTTATAATTTGTGCCAAATTTTG 57.430 29.630 22.50 15.06 32.64 2.44
3014 3476 8.908786 TTATAATTTGTGCCAAATTTTGACCA 57.091 26.923 22.50 10.44 32.64 4.02
3015 3477 7.814264 ATAATTTGTGCCAAATTTTGACCAA 57.186 28.000 22.50 7.20 32.64 3.67
3016 3478 6.521151 AATTTGTGCCAAATTTTGACCAAA 57.479 29.167 15.79 14.16 0.00 3.28
3017 3479 5.964958 TTTGTGCCAAATTTTGACCAAAA 57.035 30.435 10.72 9.94 43.48 2.44
3018 3480 5.964958 TTGTGCCAAATTTTGACCAAAAA 57.035 30.435 10.72 0.00 42.71 1.94
3048 3510 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
3049 3511 8.977505 ACTAACAAAATGTTAATGCATGTCAAC 58.022 29.630 0.00 6.06 41.70 3.18
3050 3512 7.783090 AACAAAATGTTAATGCATGTCAACA 57.217 28.000 18.58 18.58 39.09 3.33
3051 3513 7.783090 ACAAAATGTTAATGCATGTCAACAA 57.217 28.000 19.60 8.67 34.79 2.83
3052 3514 8.206325 ACAAAATGTTAATGCATGTCAACAAA 57.794 26.923 19.60 4.53 34.79 2.83
3053 3515 8.671921 ACAAAATGTTAATGCATGTCAACAAAA 58.328 25.926 19.60 3.99 34.79 2.44
3054 3516 9.499585 CAAAATGTTAATGCATGTCAACAAAAA 57.500 25.926 19.60 3.72 34.79 1.94
3059 3521 9.317936 TGTTAATGCATGTCAACAAAAATTACA 57.682 25.926 15.57 0.00 0.00 2.41
3062 3524 6.687653 TGCATGTCAACAAAAATTACATCG 57.312 33.333 0.00 0.00 0.00 3.84
3063 3525 5.118357 TGCATGTCAACAAAAATTACATCGC 59.882 36.000 0.00 0.00 0.00 4.58
3064 3526 5.345741 GCATGTCAACAAAAATTACATCGCT 59.654 36.000 0.00 0.00 0.00 4.93
3065 3527 6.668090 GCATGTCAACAAAAATTACATCGCTG 60.668 38.462 0.00 0.00 0.00 5.18
3066 3528 5.218885 TGTCAACAAAAATTACATCGCTGG 58.781 37.500 0.00 0.00 0.00 4.85
3067 3529 5.009110 TGTCAACAAAAATTACATCGCTGGA 59.991 36.000 0.00 0.00 0.00 3.86
3068 3530 6.092748 GTCAACAAAAATTACATCGCTGGAT 58.907 36.000 0.00 0.00 0.00 3.41
3069 3531 6.586082 GTCAACAAAAATTACATCGCTGGATT 59.414 34.615 0.00 0.00 0.00 3.01
3070 3532 6.806249 TCAACAAAAATTACATCGCTGGATTC 59.194 34.615 0.00 0.00 0.00 2.52
3071 3533 5.331902 ACAAAAATTACATCGCTGGATTCG 58.668 37.500 0.00 0.00 0.00 3.34
3072 3534 5.106317 ACAAAAATTACATCGCTGGATTCGT 60.106 36.000 0.00 0.00 0.00 3.85
3073 3535 6.092944 ACAAAAATTACATCGCTGGATTCGTA 59.907 34.615 0.00 0.00 0.00 3.43
3074 3536 6.861065 AAAATTACATCGCTGGATTCGTAT 57.139 33.333 0.00 0.00 0.00 3.06
3075 3537 6.861065 AAATTACATCGCTGGATTCGTATT 57.139 33.333 0.00 0.00 0.00 1.89
3076 3538 6.861065 AATTACATCGCTGGATTCGTATTT 57.139 33.333 0.00 0.00 0.00 1.40
3077 3539 5.651172 TTACATCGCTGGATTCGTATTTG 57.349 39.130 0.00 0.00 0.00 2.32
3078 3540 3.792401 ACATCGCTGGATTCGTATTTGA 58.208 40.909 0.00 0.00 0.00 2.69
3079 3541 4.188462 ACATCGCTGGATTCGTATTTGAA 58.812 39.130 0.00 0.00 0.00 2.69
3080 3542 4.034048 ACATCGCTGGATTCGTATTTGAAC 59.966 41.667 0.00 0.00 0.00 3.18
3081 3543 3.591023 TCGCTGGATTCGTATTTGAACA 58.409 40.909 0.00 0.00 0.00 3.18
3082 3544 4.188462 TCGCTGGATTCGTATTTGAACAT 58.812 39.130 0.00 0.00 0.00 2.71
3083 3545 5.353111 TCGCTGGATTCGTATTTGAACATA 58.647 37.500 0.00 0.00 0.00 2.29
3084 3546 5.462068 TCGCTGGATTCGTATTTGAACATAG 59.538 40.000 0.00 0.00 0.00 2.23
3085 3547 5.234329 CGCTGGATTCGTATTTGAACATAGT 59.766 40.000 0.00 0.00 0.00 2.12
3086 3548 6.238103 CGCTGGATTCGTATTTGAACATAGTT 60.238 38.462 0.00 0.00 0.00 2.24
3087 3549 7.472543 GCTGGATTCGTATTTGAACATAGTTT 58.527 34.615 0.00 0.00 0.00 2.66
3088 3550 7.968405 GCTGGATTCGTATTTGAACATAGTTTT 59.032 33.333 0.00 0.00 0.00 2.43
3089 3551 9.840427 CTGGATTCGTATTTGAACATAGTTTTT 57.160 29.630 0.00 0.00 0.00 1.94
3123 3585 8.836268 AATTTGTTATGACATGCAAGAACATT 57.164 26.923 8.67 0.91 36.72 2.71
3124 3586 8.836268 ATTTGTTATGACATGCAAGAACATTT 57.164 26.923 8.67 0.00 36.72 2.32
3125 3587 8.659925 TTTGTTATGACATGCAAGAACATTTT 57.340 26.923 8.67 0.00 36.72 1.82
3126 3588 7.640616 TGTTATGACATGCAAGAACATTTTG 57.359 32.000 0.00 0.00 33.79 2.44
3127 3589 7.208777 TGTTATGACATGCAAGAACATTTTGT 58.791 30.769 0.00 0.00 33.79 2.83
3128 3590 7.710044 TGTTATGACATGCAAGAACATTTTGTT 59.290 29.630 0.00 0.00 44.37 2.83
3129 3591 9.190858 GTTATGACATGCAAGAACATTTTGTTA 57.809 29.630 0.00 0.00 41.28 2.41
3130 3592 7.878477 ATGACATGCAAGAACATTTTGTTAG 57.122 32.000 0.00 0.00 41.28 2.34
3131 3593 6.804677 TGACATGCAAGAACATTTTGTTAGT 58.195 32.000 0.00 0.00 41.28 2.24
3132 3594 7.264221 TGACATGCAAGAACATTTTGTTAGTT 58.736 30.769 0.00 0.00 41.28 2.24
3133 3595 8.409371 TGACATGCAAGAACATTTTGTTAGTTA 58.591 29.630 0.00 0.00 41.28 2.24
3134 3596 9.243637 GACATGCAAGAACATTTTGTTAGTTAA 57.756 29.630 0.00 0.00 41.28 2.01
3135 3597 9.593134 ACATGCAAGAACATTTTGTTAGTTAAA 57.407 25.926 0.00 0.00 41.28 1.52
3157 3619 7.769272 AAATATATGGTCAAATTTTGGCACG 57.231 32.000 15.12 0.00 36.88 5.34
3158 3620 6.707440 ATATATGGTCAAATTTTGGCACGA 57.293 33.333 15.12 2.69 36.88 4.35
3159 3621 3.742433 ATGGTCAAATTTTGGCACGAA 57.258 38.095 15.12 0.00 36.88 3.85
3160 3622 3.526931 TGGTCAAATTTTGGCACGAAA 57.473 38.095 15.12 0.00 36.88 3.46
3161 3623 4.065321 TGGTCAAATTTTGGCACGAAAT 57.935 36.364 15.12 0.00 36.88 2.17
3162 3624 5.201713 TGGTCAAATTTTGGCACGAAATA 57.798 34.783 15.12 0.00 36.88 1.40
3163 3625 4.985409 TGGTCAAATTTTGGCACGAAATAC 59.015 37.500 15.12 0.61 36.88 1.89
3164 3626 4.985409 GGTCAAATTTTGGCACGAAATACA 59.015 37.500 15.12 0.00 36.88 2.29
3165 3627 5.463724 GGTCAAATTTTGGCACGAAATACAA 59.536 36.000 15.12 0.00 36.88 2.41
3166 3628 6.147000 GGTCAAATTTTGGCACGAAATACAAT 59.853 34.615 15.12 0.00 36.88 2.71
3167 3629 7.008859 GTCAAATTTTGGCACGAAATACAATG 58.991 34.615 8.82 0.00 34.79 2.82
3168 3630 6.146837 TCAAATTTTGGCACGAAATACAATGG 59.853 34.615 9.18 0.00 0.00 3.16
3169 3631 3.584406 TTTGGCACGAAATACAATGGG 57.416 42.857 0.00 0.00 0.00 4.00
3170 3632 1.468985 TGGCACGAAATACAATGGGG 58.531 50.000 0.00 0.00 0.00 4.96
3171 3633 1.004862 TGGCACGAAATACAATGGGGA 59.995 47.619 0.00 0.00 0.00 4.81
3172 3634 1.404035 GGCACGAAATACAATGGGGAC 59.596 52.381 0.00 0.00 0.00 4.46
3187 3649 1.746470 GGGACCAATAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
3188 3650 1.680860 GGGACCAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
3189 3651 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
3190 3652 2.629051 GACCAATAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
3191 3653 1.280998 ACCAATAAACCAGGACGGAGG 59.719 52.381 0.00 0.00 38.63 4.30
3192 3654 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
3193 3655 2.502538 CCAATAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
3194 3656 3.431766 CCAATAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
3195 3657 2.610438 TAAACCAGGACGGAGGTAGT 57.390 50.000 0.00 0.00 37.07 2.73
3196 3658 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
3266 3728 9.325198 CTGTACAGTACTGCCATATTATTTTGA 57.675 33.333 22.90 0.00 0.00 2.69
3294 3756 3.384467 AGCTTGGTTGTTTGCATTGTACT 59.616 39.130 0.00 0.00 0.00 2.73
3295 3757 3.735746 GCTTGGTTGTTTGCATTGTACTC 59.264 43.478 0.00 0.00 0.00 2.59
3296 3758 4.298332 CTTGGTTGTTTGCATTGTACTCC 58.702 43.478 0.00 0.00 0.00 3.85
3297 3759 2.625790 TGGTTGTTTGCATTGTACTCCC 59.374 45.455 0.00 0.00 0.00 4.30
3298 3760 2.890945 GGTTGTTTGCATTGTACTCCCT 59.109 45.455 0.00 0.00 0.00 4.20
3299 3761 3.320826 GGTTGTTTGCATTGTACTCCCTT 59.679 43.478 0.00 0.00 0.00 3.95
3300 3762 4.202212 GGTTGTTTGCATTGTACTCCCTTT 60.202 41.667 0.00 0.00 0.00 3.11
3301 3763 4.582701 TGTTTGCATTGTACTCCCTTTG 57.417 40.909 0.00 0.00 0.00 2.77
3302 3764 3.957497 TGTTTGCATTGTACTCCCTTTGT 59.043 39.130 0.00 0.00 0.00 2.83
3303 3765 5.133941 TGTTTGCATTGTACTCCCTTTGTA 58.866 37.500 0.00 0.00 0.00 2.41
3304 3766 5.594725 TGTTTGCATTGTACTCCCTTTGTAA 59.405 36.000 0.00 0.00 0.00 2.41
3305 3767 6.096987 TGTTTGCATTGTACTCCCTTTGTAAA 59.903 34.615 0.00 0.00 0.00 2.01
3306 3768 5.699097 TGCATTGTACTCCCTTTGTAAAC 57.301 39.130 0.00 0.00 0.00 2.01
3307 3769 4.214545 TGCATTGTACTCCCTTTGTAAACG 59.785 41.667 0.00 0.00 0.00 3.60
3308 3770 4.453136 GCATTGTACTCCCTTTGTAAACGA 59.547 41.667 0.00 0.00 0.00 3.85
3309 3771 5.390567 GCATTGTACTCCCTTTGTAAACGAG 60.391 44.000 0.00 0.00 0.00 4.18
3310 3772 3.656559 TGTACTCCCTTTGTAAACGAGC 58.343 45.455 0.00 0.00 0.00 5.03
3311 3773 3.322828 TGTACTCCCTTTGTAAACGAGCT 59.677 43.478 0.00 0.00 0.00 4.09
3312 3774 3.487120 ACTCCCTTTGTAAACGAGCTT 57.513 42.857 0.00 0.00 0.00 3.74
3313 3775 4.612264 ACTCCCTTTGTAAACGAGCTTA 57.388 40.909 0.00 0.00 0.00 3.09
3314 3776 5.161943 ACTCCCTTTGTAAACGAGCTTAT 57.838 39.130 0.00 0.00 0.00 1.73
3315 3777 6.290294 ACTCCCTTTGTAAACGAGCTTATA 57.710 37.500 0.00 0.00 0.00 0.98
3316 3778 6.885922 ACTCCCTTTGTAAACGAGCTTATAT 58.114 36.000 0.00 0.00 0.00 0.86
3317 3779 7.336396 ACTCCCTTTGTAAACGAGCTTATATT 58.664 34.615 0.00 0.00 0.00 1.28
3318 3780 7.827729 ACTCCCTTTGTAAACGAGCTTATATTT 59.172 33.333 0.00 0.00 0.00 1.40
3319 3781 8.205131 TCCCTTTGTAAACGAGCTTATATTTC 57.795 34.615 0.00 0.00 0.00 2.17
3320 3782 8.044908 TCCCTTTGTAAACGAGCTTATATTTCT 58.955 33.333 0.00 0.00 0.00 2.52
3321 3783 8.674607 CCCTTTGTAAACGAGCTTATATTTCTT 58.325 33.333 0.00 0.00 0.00 2.52
3329 3791 8.649973 AACGAGCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
3330 3792 7.210873 ACGAGCTTATATTTCTTTACAGAGGG 58.789 38.462 0.00 0.00 0.00 4.30
3331 3793 7.069578 ACGAGCTTATATTTCTTTACAGAGGGA 59.930 37.037 0.00 0.00 0.00 4.20
3351 4741 9.280456 AGAGGGAGTATCTTAATTTACTGGAAA 57.720 33.333 3.01 0.00 33.73 3.13
3380 4770 0.943673 TGTGTGTTTCACCTGCATCG 59.056 50.000 0.00 0.00 45.61 3.84
3395 4785 7.120579 TCACCTGCATCGTTATTTTTATTCTGT 59.879 33.333 0.00 0.00 0.00 3.41
3501 7016 3.070018 ACTTTCTTGGAGCGAGTTGATG 58.930 45.455 0.00 0.00 0.00 3.07
3505 7020 2.094494 TCTTGGAGCGAGTTGATGTCTC 60.094 50.000 0.00 0.00 0.00 3.36
3515 7030 5.405571 GCGAGTTGATGTCTCTGTAAGAAAA 59.594 40.000 0.00 0.00 46.34 2.29
3633 7165 3.165058 TGACCTATAACTGAGCTTGCG 57.835 47.619 0.00 0.00 0.00 4.85
3656 7188 1.272704 GGCATCTCCCAAGGAAAACCT 60.273 52.381 0.00 0.00 0.00 3.50
3669 7201 7.758076 CCCAAGGAAAACCTATTTATCGAAAAC 59.242 37.037 0.00 0.00 0.00 2.43
3671 7203 7.677454 AGGAAAACCTATTTATCGAAAACGT 57.323 32.000 0.00 0.00 0.00 3.99
3709 7242 7.658179 TCACAAAGAGAGCTATTGTTTGTAG 57.342 36.000 19.22 15.07 38.87 2.74
3710 7243 7.441836 TCACAAAGAGAGCTATTGTTTGTAGA 58.558 34.615 19.22 16.38 38.87 2.59
3711 7244 7.931407 TCACAAAGAGAGCTATTGTTTGTAGAA 59.069 33.333 19.22 9.95 38.87 2.10
3712 7245 8.559536 CACAAAGAGAGCTATTGTTTGTAGAAA 58.440 33.333 19.22 0.00 38.87 2.52
3713 7246 9.120538 ACAAAGAGAGCTATTGTTTGTAGAAAA 57.879 29.630 18.59 0.00 39.07 2.29
3716 7249 8.273780 AGAGAGCTATTGTTTGTAGAAAATGG 57.726 34.615 0.00 0.00 0.00 3.16
3726 7329 4.344359 TGTAGAAAATGGTTTTTGGGCC 57.656 40.909 0.00 0.00 35.20 5.80
3786 7394 0.582005 GTGTCAGTGGCAAGTTCGTC 59.418 55.000 0.00 0.00 0.00 4.20
3790 7398 1.412710 TCAGTGGCAAGTTCGTCTTCT 59.587 47.619 0.00 0.00 33.63 2.85
3812 7421 5.765182 TCTCGTGCAGTCAGATATTCATCTA 59.235 40.000 0.00 0.00 39.62 1.98
3863 7472 3.165071 GGTCACCCATTGGACATTTCTT 58.835 45.455 3.62 0.00 35.74 2.52
3884 7493 4.916041 TTTCTGAGTGTGGGAATGAGAT 57.084 40.909 0.00 0.00 0.00 2.75
3892 7501 4.079558 AGTGTGGGAATGAGATTATTGCCT 60.080 41.667 8.88 0.00 45.58 4.75
3894 7503 3.571401 GTGGGAATGAGATTATTGCCTGG 59.429 47.826 8.88 0.00 45.58 4.45
3968 7579 2.825532 CAATTTGTGGGGGTAGAACCTG 59.174 50.000 0.00 0.00 38.64 4.00
4006 7617 2.421073 TGCAGTGCTCATGCTTTCATAC 59.579 45.455 17.60 0.00 44.17 2.39
4014 7627 5.882000 TGCTCATGCTTTCATACTAATGTGT 59.118 36.000 0.00 0.00 40.48 3.72
4016 7629 6.909357 GCTCATGCTTTCATACTAATGTGTTC 59.091 38.462 0.00 0.00 33.84 3.18
4018 7631 6.318648 TCATGCTTTCATACTAATGTGTTCCC 59.681 38.462 0.00 0.00 34.50 3.97
4056 7669 4.678256 TCCCAGATACTGATATCCTGTCC 58.322 47.826 0.00 0.00 38.43 4.02
4057 7670 4.358310 TCCCAGATACTGATATCCTGTCCT 59.642 45.833 0.00 0.00 38.43 3.85
4058 7671 4.465660 CCCAGATACTGATATCCTGTCCTG 59.534 50.000 0.00 9.66 38.43 3.86
4059 7672 5.083122 CCAGATACTGATATCCTGTCCTGT 58.917 45.833 0.00 0.00 38.43 4.00
4060 7673 5.184864 CCAGATACTGATATCCTGTCCTGTC 59.815 48.000 0.00 0.00 38.43 3.51
4101 7714 2.099263 AGAGACGATCAATGTGGGTACG 59.901 50.000 0.00 0.00 0.00 3.67
4107 7720 2.188062 TCAATGTGGGTACGGAAACC 57.812 50.000 0.00 0.00 38.94 3.27
4137 7750 1.370900 CAAAGCACAGGCAAGACGC 60.371 57.895 0.00 0.00 44.61 5.19
4195 7808 1.618837 TGCTGTCTAAGAGGGACACAC 59.381 52.381 0.00 0.00 38.57 3.82
4199 7812 2.567169 TGTCTAAGAGGGACACACCATG 59.433 50.000 0.00 0.00 38.57 3.66
4524 8218 8.746530 TCATAACTCGATTGTACTACTTCCTTT 58.253 33.333 0.00 0.00 0.00 3.11
4525 8219 8.808529 CATAACTCGATTGTACTACTTCCTTTG 58.191 37.037 0.00 0.00 0.00 2.77
4566 8262 4.448210 TGTGAGGTTTACAGAAGTTGGTC 58.552 43.478 0.00 0.00 0.00 4.02
4592 8288 6.096001 GGAATGCACTCTTCCTCAAACAATAT 59.904 38.462 9.85 0.00 39.30 1.28
4598 8294 9.508567 GCACTCTTCCTCAAACAATATTTTATC 57.491 33.333 0.00 0.00 0.00 1.75
4615 8311 6.942532 TTTTATCATTAGTGGCTCATGGTC 57.057 37.500 0.00 0.00 0.00 4.02
4635 8331 2.745821 TCATCATCACTCTGCTGTTTGC 59.254 45.455 0.00 0.00 43.25 3.68
4669 8368 5.483685 TGCTTCCACACTAGTTCACTAAT 57.516 39.130 0.00 0.00 0.00 1.73
4684 8383 6.493458 AGTTCACTAATTGTAAAGGCCACATT 59.507 34.615 5.01 0.00 0.00 2.71
4765 8479 0.240945 CCCATGACCGTTCTTTGTGC 59.759 55.000 0.00 0.00 0.00 4.57
4779 8493 7.129622 CGTTCTTTGTGCACTAAAATACTTCA 58.870 34.615 19.41 0.00 0.00 3.02
4785 8499 8.439993 TTGTGCACTAAAATACTTCAGTACAA 57.560 30.769 19.41 0.00 32.72 2.41
4805 8520 9.080097 AGTACAATAGTTCACTTTCACTAGACT 57.920 33.333 0.00 0.00 0.00 3.24
4909 8626 3.686016 CTGTTACACTGCCTTAATGGGT 58.314 45.455 0.00 0.00 36.00 4.51
4919 8636 2.494059 CCTTAATGGGTAGTGCATCGG 58.506 52.381 0.00 0.00 0.00 4.18
5197 8928 4.635765 CGCTTGGAAGTTCCTTGAATCATA 59.364 41.667 22.41 0.00 37.46 2.15
5198 8929 5.297776 CGCTTGGAAGTTCCTTGAATCATAT 59.702 40.000 22.41 0.00 37.46 1.78
5270 9001 1.008995 GCGCAAAACCGAAGCTTGA 60.009 52.632 2.10 0.00 0.00 3.02
5290 9021 5.749596 TGACAAACCACTGTAGAATTGTG 57.250 39.130 6.81 0.00 31.68 3.33
5316 9139 5.342806 TGTTGTTATTCTCTTGACAAGCG 57.657 39.130 10.50 4.47 33.15 4.68
5365 9188 4.605640 ATGTTCCCTGTGAAAACATTGG 57.394 40.909 0.00 0.00 39.87 3.16
5408 9232 3.136077 ACATCTGGAATCATGGGAGTGAG 59.864 47.826 0.00 0.00 0.00 3.51
5463 9292 5.308014 TGAGATTGTGCTGTTACTGATGTT 58.692 37.500 0.00 0.00 0.00 2.71
5471 9300 3.127030 GCTGTTACTGATGTTTAGTGGGC 59.873 47.826 0.00 0.00 0.00 5.36
5474 9335 4.189231 GTTACTGATGTTTAGTGGGCGAT 58.811 43.478 0.00 0.00 0.00 4.58
5480 9341 3.627395 TGTTTAGTGGGCGATGAATCT 57.373 42.857 0.00 0.00 0.00 2.40
5583 9444 1.770294 TTTTCGCACCCTTTCCAGTT 58.230 45.000 0.00 0.00 0.00 3.16
5612 9473 3.861276 TCGAGAAGCCGTCAAAAGATA 57.139 42.857 0.00 0.00 0.00 1.98
5613 9474 3.770666 TCGAGAAGCCGTCAAAAGATAG 58.229 45.455 0.00 0.00 0.00 2.08
5653 9517 2.730672 GCCGTTGTGCACTAGCTCG 61.731 63.158 19.41 10.37 42.74 5.03
5663 9527 0.593518 CACTAGCTCGAGATGGTGCG 60.594 60.000 29.86 11.67 36.22 5.34
5675 9539 2.252556 TGGTGCGCCATTTACACTG 58.747 52.632 16.89 0.00 40.46 3.66
5748 9736 6.527722 GCGCAAAGATTCAGAATAAACAATGA 59.472 34.615 0.30 0.00 0.00 2.57
5784 9772 3.680786 GCCAACCCGCCAACCTTC 61.681 66.667 0.00 0.00 0.00 3.46
5817 9808 2.582226 GATCGTCGCCGTGCATGA 60.582 61.111 7.72 0.00 35.01 3.07
5818 9809 2.125713 ATCGTCGCCGTGCATGAA 60.126 55.556 7.72 0.00 35.01 2.57
5835 9826 4.496336 AATGCTCCGCTGGCCTCC 62.496 66.667 3.32 0.00 0.00 4.30
5949 9945 2.852075 GACTCCCCCACCACCACA 60.852 66.667 0.00 0.00 0.00 4.17
5950 9946 2.854032 ACTCCCCCACCACCACAG 60.854 66.667 0.00 0.00 0.00 3.66
5951 9947 2.854032 CTCCCCCACCACCACAGT 60.854 66.667 0.00 0.00 0.00 3.55
5952 9948 3.174987 TCCCCCACCACCACAGTG 61.175 66.667 0.00 0.00 44.12 3.66
5953 9949 4.974721 CCCCCACCACCACAGTGC 62.975 72.222 0.00 0.00 43.09 4.40
5954 9950 4.974721 CCCCACCACCACAGTGCC 62.975 72.222 0.00 0.00 43.09 5.01
5965 9978 0.391661 CACAGTGCCCTTGCTACGAT 60.392 55.000 0.00 0.00 38.71 3.73
5970 9983 2.027561 AGTGCCCTTGCTACGATAAACA 60.028 45.455 0.00 0.00 38.71 2.83
5976 9989 5.045215 CCCTTGCTACGATAAACATAACGA 58.955 41.667 0.00 0.00 0.00 3.85
5978 9991 5.747197 CCTTGCTACGATAAACATAACGAGT 59.253 40.000 0.00 0.00 0.00 4.18
6021 10036 3.444642 CGTACGTGACGCTTCCAC 58.555 61.111 4.25 0.00 46.27 4.02
6031 10046 4.814294 GCTTCCACGCCGTCGGAT 62.814 66.667 17.49 0.00 40.69 4.18
6032 10047 2.125673 CTTCCACGCCGTCGGATT 60.126 61.111 17.49 0.00 40.69 3.01
6033 10048 1.140161 CTTCCACGCCGTCGGATTA 59.860 57.895 17.49 0.00 40.69 1.75
6034 10049 0.458889 CTTCCACGCCGTCGGATTAA 60.459 55.000 17.49 0.20 40.69 1.40
6035 10050 0.176219 TTCCACGCCGTCGGATTAAT 59.824 50.000 17.49 0.00 40.69 1.40
6036 10051 0.176219 TCCACGCCGTCGGATTAATT 59.824 50.000 17.49 0.00 40.69 1.40
6037 10052 0.580104 CCACGCCGTCGGATTAATTC 59.420 55.000 17.49 0.00 40.69 2.17
6038 10053 0.580104 CACGCCGTCGGATTAATTCC 59.420 55.000 17.49 0.00 41.59 3.01
6039 10054 0.531311 ACGCCGTCGGATTAATTCCC 60.531 55.000 17.49 0.00 42.06 3.97
6040 10055 0.531090 CGCCGTCGGATTAATTCCCA 60.531 55.000 17.49 0.00 42.06 4.37
6041 10056 1.226746 GCCGTCGGATTAATTCCCAG 58.773 55.000 17.49 0.00 42.06 4.45
6042 10057 1.226746 CCGTCGGATTAATTCCCAGC 58.773 55.000 4.91 0.00 42.06 4.85
6043 10058 0.859232 CGTCGGATTAATTCCCAGCG 59.141 55.000 0.00 0.00 42.06 5.18
6044 10059 1.226746 GTCGGATTAATTCCCAGCGG 58.773 55.000 0.00 0.00 42.06 5.52
6045 10060 0.534203 TCGGATTAATTCCCAGCGGC 60.534 55.000 0.00 0.00 42.06 6.53
6046 10061 1.515521 CGGATTAATTCCCAGCGGCC 61.516 60.000 0.00 0.00 42.06 6.13
6047 10062 1.515521 GGATTAATTCCCAGCGGCCG 61.516 60.000 24.05 24.05 38.75 6.13
6048 10063 1.515521 GATTAATTCCCAGCGGCCGG 61.516 60.000 29.38 11.34 0.00 6.13
6049 10064 2.279037 ATTAATTCCCAGCGGCCGGT 62.279 55.000 26.97 26.97 0.00 5.28
6050 10065 3.690685 TAATTCCCAGCGGCCGGTG 62.691 63.158 42.51 42.51 42.60 4.94
6116 10131 1.152694 AAAGGCTGGCAGCTCACAA 60.153 52.632 35.73 0.00 41.99 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.570386 ACAGAGGTACCTTAGCCCAT 57.430 50.000 17.53 0.00 0.00 4.00
87 88 1.968017 CTTGGTGGCGTGCAGTGAT 60.968 57.895 0.00 0.00 0.00 3.06
88 89 2.591429 CTTGGTGGCGTGCAGTGA 60.591 61.111 0.00 0.00 0.00 3.41
141 142 6.443849 TCATCTTAACTACCCCATGAGTTCTT 59.556 38.462 0.00 0.00 37.16 2.52
170 176 2.356135 GTGTGTGGCACCACCTATTAG 58.644 52.381 21.38 0.00 45.63 1.73
181 187 1.102154 CCTCTGTTTTGTGTGTGGCA 58.898 50.000 0.00 0.00 0.00 4.92
215 221 6.721208 ACCCACACTGTTCATTTATCATCTTT 59.279 34.615 0.00 0.00 0.00 2.52
236 242 2.914278 TCTCGGGGAAATTTCTAACCCA 59.086 45.455 23.11 13.40 43.67 4.51
334 358 5.163844 GGCAAGTTAGCAAAGACTAGCTTAC 60.164 44.000 7.54 8.72 40.43 2.34
335 359 4.935808 GGCAAGTTAGCAAAGACTAGCTTA 59.064 41.667 7.54 0.00 40.43 3.09
460 487 0.107508 AGGAGGATGAACGTGCATGG 60.108 55.000 15.49 0.00 0.00 3.66
574 601 0.872021 GACGCCGCTCAGGACAATAG 60.872 60.000 0.00 0.00 45.00 1.73
587 617 3.032609 GATCTGCATCCGACGCCG 61.033 66.667 0.00 0.00 0.00 6.46
655 685 4.806640 TTACGGGTTCGGTATCTTTCTT 57.193 40.909 0.00 0.00 41.39 2.52
658 688 3.264947 GCTTTACGGGTTCGGTATCTTT 58.735 45.455 0.00 0.00 41.39 2.52
700 733 1.065551 GCTTGTCTGGCTTCGTGTTTT 59.934 47.619 0.00 0.00 0.00 2.43
704 737 1.572085 CCTGCTTGTCTGGCTTCGTG 61.572 60.000 0.00 0.00 0.00 4.35
837 877 3.486263 GCAGATGCGGCGTTTACT 58.514 55.556 9.37 0.23 0.00 2.24
858 898 4.468769 ATCGGCGGGACCCCAGTA 62.469 66.667 7.21 0.00 35.37 2.74
893 933 1.662517 CAGCCCAAACCAAACCAAAC 58.337 50.000 0.00 0.00 0.00 2.93
896 936 1.764054 CCCAGCCCAAACCAAACCA 60.764 57.895 0.00 0.00 0.00 3.67
898 938 2.140138 AGCCCAGCCCAAACCAAAC 61.140 57.895 0.00 0.00 0.00 2.93
900 940 2.523902 CAGCCCAGCCCAAACCAA 60.524 61.111 0.00 0.00 0.00 3.67
901 941 4.619320 CCAGCCCAGCCCAAACCA 62.619 66.667 0.00 0.00 0.00 3.67
903 943 4.621087 ACCCAGCCCAGCCCAAAC 62.621 66.667 0.00 0.00 0.00 2.93
905 945 4.619320 CAACCCAGCCCAGCCCAA 62.619 66.667 0.00 0.00 0.00 4.12
990 1035 1.295915 CCAAATCCATCCCCTCCCCA 61.296 60.000 0.00 0.00 0.00 4.96
991 1036 1.543690 CCAAATCCATCCCCTCCCC 59.456 63.158 0.00 0.00 0.00 4.81
1097 1142 8.821686 TCAAACATAGAGAGAGAGAGAGAAAT 57.178 34.615 0.00 0.00 0.00 2.17
1103 1148 7.548427 TGCAAATTCAAACATAGAGAGAGAGAG 59.452 37.037 0.00 0.00 0.00 3.20
1105 1150 7.118825 TGTGCAAATTCAAACATAGAGAGAGAG 59.881 37.037 0.00 0.00 0.00 3.20
1113 1158 4.229096 AGCGTGTGCAAATTCAAACATAG 58.771 39.130 0.00 0.00 46.23 2.23
1127 1172 1.738099 ACTCCATCGAAGCGTGTGC 60.738 57.895 0.00 0.00 43.24 4.57
1128 1173 1.959899 GCACTCCATCGAAGCGTGTG 61.960 60.000 9.73 8.46 0.00 3.82
1129 1174 1.738099 GCACTCCATCGAAGCGTGT 60.738 57.895 9.73 0.00 0.00 4.49
1132 1177 2.892425 GGGCACTCCATCGAAGCG 60.892 66.667 0.00 0.00 35.00 4.68
1142 1187 1.960689 GAGGAGATCTACTGGGCACTC 59.039 57.143 13.72 0.00 0.00 3.51
1163 1208 2.742053 ACGCGAAATCAACAGCAATACT 59.258 40.909 15.93 0.00 0.00 2.12
1167 1212 2.159585 CCATACGCGAAATCAACAGCAA 60.160 45.455 15.93 0.00 0.00 3.91
1191 1236 1.156736 CCACAGGTCAACAATCCGAC 58.843 55.000 0.00 0.00 0.00 4.79
1209 1254 0.892063 AACGCTCTTCTCCAGTCTCC 59.108 55.000 0.00 0.00 0.00 3.71
1214 1259 0.794981 CGACGAACGCTCTTCTCCAG 60.795 60.000 0.00 0.00 34.51 3.86
1215 1260 1.209383 CGACGAACGCTCTTCTCCA 59.791 57.895 0.00 0.00 34.51 3.86
1216 1261 0.386985 AACGACGAACGCTCTTCTCC 60.387 55.000 0.00 0.00 46.94 3.71
1217 1262 0.976253 GAACGACGAACGCTCTTCTC 59.024 55.000 0.00 0.00 46.94 2.87
1218 1263 0.309922 TGAACGACGAACGCTCTTCT 59.690 50.000 0.00 0.00 46.94 2.85
1219 1264 0.703466 CTGAACGACGAACGCTCTTC 59.297 55.000 0.00 0.00 46.94 2.87
1220 1265 0.663568 CCTGAACGACGAACGCTCTT 60.664 55.000 0.00 0.00 46.94 2.85
1221 1266 1.081376 CCTGAACGACGAACGCTCT 60.081 57.895 0.00 0.00 46.94 4.09
1222 1267 0.938168 AACCTGAACGACGAACGCTC 60.938 55.000 0.00 0.00 46.94 5.03
1223 1268 1.066918 AACCTGAACGACGAACGCT 59.933 52.632 0.00 0.00 46.94 5.07
1224 1269 1.200839 CAACCTGAACGACGAACGC 59.799 57.895 0.00 0.00 46.94 4.84
1225 1270 1.790623 ATTCAACCTGAACGACGAACG 59.209 47.619 0.00 0.00 39.45 3.95
1226 1271 2.096417 CCATTCAACCTGAACGACGAAC 60.096 50.000 0.00 0.00 39.45 3.95
1227 1272 2.139917 CCATTCAACCTGAACGACGAA 58.860 47.619 0.00 0.00 39.45 3.85
1228 1273 1.606994 CCCATTCAACCTGAACGACGA 60.607 52.381 0.00 0.00 39.45 4.20
1229 1274 0.796312 CCCATTCAACCTGAACGACG 59.204 55.000 0.00 0.00 39.45 5.12
1230 1275 0.521735 GCCCATTCAACCTGAACGAC 59.478 55.000 0.00 0.00 39.45 4.34
1231 1276 0.109532 TGCCCATTCAACCTGAACGA 59.890 50.000 0.00 0.00 39.45 3.85
1232 1277 1.135315 CATGCCCATTCAACCTGAACG 60.135 52.381 0.00 0.00 39.45 3.95
1233 1278 1.895131 ACATGCCCATTCAACCTGAAC 59.105 47.619 0.00 0.00 39.45 3.18
1234 1279 1.894466 CACATGCCCATTCAACCTGAA 59.106 47.619 0.00 0.00 41.09 3.02
1235 1280 1.203038 ACACATGCCCATTCAACCTGA 60.203 47.619 0.00 0.00 0.00 3.86
1236 1281 1.259609 ACACATGCCCATTCAACCTG 58.740 50.000 0.00 0.00 0.00 4.00
1237 1282 2.014010 AACACATGCCCATTCAACCT 57.986 45.000 0.00 0.00 0.00 3.50
1238 1283 2.224257 ACAAACACATGCCCATTCAACC 60.224 45.455 0.00 0.00 0.00 3.77
1239 1284 3.110447 ACAAACACATGCCCATTCAAC 57.890 42.857 0.00 0.00 0.00 3.18
1240 1285 3.118482 ACAACAAACACATGCCCATTCAA 60.118 39.130 0.00 0.00 0.00 2.69
1241 1286 2.433604 ACAACAAACACATGCCCATTCA 59.566 40.909 0.00 0.00 0.00 2.57
1242 1287 3.110447 ACAACAAACACATGCCCATTC 57.890 42.857 0.00 0.00 0.00 2.67
1243 1288 3.640967 ACTACAACAAACACATGCCCATT 59.359 39.130 0.00 0.00 0.00 3.16
1244 1289 3.230134 ACTACAACAAACACATGCCCAT 58.770 40.909 0.00 0.00 0.00 4.00
1245 1290 2.621055 GACTACAACAAACACATGCCCA 59.379 45.455 0.00 0.00 0.00 5.36
1246 1291 2.884639 AGACTACAACAAACACATGCCC 59.115 45.455 0.00 0.00 0.00 5.36
1247 1292 3.058224 GGAGACTACAACAAACACATGCC 60.058 47.826 0.00 0.00 0.00 4.40
1250 1295 2.806244 GCGGAGACTACAACAAACACAT 59.194 45.455 0.00 0.00 0.00 3.21
1305 1350 3.782413 AAATCAATCAATCCACCCCCT 57.218 42.857 0.00 0.00 0.00 4.79
1326 1371 5.781306 GGGGGTTATACTCCTTTTCCAAAAA 59.219 40.000 0.00 0.00 39.27 1.94
1327 1372 5.335261 GGGGGTTATACTCCTTTTCCAAAA 58.665 41.667 0.00 0.00 39.27 2.44
1328 1373 4.568169 CGGGGGTTATACTCCTTTTCCAAA 60.568 45.833 0.00 0.00 39.27 3.28
1329 1374 3.054213 CGGGGGTTATACTCCTTTTCCAA 60.054 47.826 0.00 0.00 39.27 3.53
1330 1375 2.506644 CGGGGGTTATACTCCTTTTCCA 59.493 50.000 0.00 0.00 39.27 3.53
1331 1376 2.158711 CCGGGGGTTATACTCCTTTTCC 60.159 54.545 0.00 0.00 39.27 3.13
1332 1377 2.747467 GCCGGGGGTTATACTCCTTTTC 60.747 54.545 2.18 0.00 39.27 2.29
1333 1378 1.213678 GCCGGGGGTTATACTCCTTTT 59.786 52.381 2.18 0.00 39.27 2.27
1334 1379 0.841961 GCCGGGGGTTATACTCCTTT 59.158 55.000 2.18 0.00 39.27 3.11
1335 1380 1.058428 GGCCGGGGGTTATACTCCTT 61.058 60.000 2.18 0.00 39.27 3.36
1336 1381 1.460882 GGCCGGGGGTTATACTCCT 60.461 63.158 2.18 0.00 39.27 3.69
1337 1382 1.460882 AGGCCGGGGGTTATACTCC 60.461 63.158 2.18 0.00 38.29 3.85
1338 1383 0.471401 AGAGGCCGGGGGTTATACTC 60.471 60.000 2.18 0.00 0.00 2.59
1339 1384 0.763223 CAGAGGCCGGGGGTTATACT 60.763 60.000 2.18 0.00 0.00 2.12
1340 1385 1.752833 CAGAGGCCGGGGGTTATAC 59.247 63.158 2.18 0.00 0.00 1.47
1341 1386 2.144738 GCAGAGGCCGGGGGTTATA 61.145 63.158 2.18 0.00 0.00 0.98
1342 1387 3.489513 GCAGAGGCCGGGGGTTAT 61.490 66.667 2.18 0.00 0.00 1.89
1347 1392 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
1349 1394 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
1371 1416 3.628942 TCAATCAATCCACTGCTGTATGC 59.371 43.478 0.00 0.00 43.25 3.14
1372 1417 5.278315 CCATCAATCAATCCACTGCTGTATG 60.278 44.000 0.00 0.00 0.00 2.39
1373 1418 4.825634 CCATCAATCAATCCACTGCTGTAT 59.174 41.667 0.00 0.00 0.00 2.29
1374 1419 4.201657 CCATCAATCAATCCACTGCTGTA 58.798 43.478 0.00 0.00 0.00 2.74
1375 1420 3.021695 CCATCAATCAATCCACTGCTGT 58.978 45.455 0.00 0.00 0.00 4.40
1376 1421 2.361119 CCCATCAATCAATCCACTGCTG 59.639 50.000 0.00 0.00 0.00 4.41
1377 1422 2.024655 ACCCATCAATCAATCCACTGCT 60.025 45.455 0.00 0.00 0.00 4.24
1378 1423 2.381911 ACCCATCAATCAATCCACTGC 58.618 47.619 0.00 0.00 0.00 4.40
1379 1424 4.018490 TCAACCCATCAATCAATCCACTG 58.982 43.478 0.00 0.00 0.00 3.66
1380 1425 4.320546 TCAACCCATCAATCAATCCACT 57.679 40.909 0.00 0.00 0.00 4.00
1384 1429 4.931661 AGCATCAACCCATCAATCAATC 57.068 40.909 0.00 0.00 0.00 2.67
1393 1438 2.607499 TCAACCAAAGCATCAACCCAT 58.393 42.857 0.00 0.00 0.00 4.00
1397 1442 5.176223 CAGACAAATCAACCAAAGCATCAAC 59.824 40.000 0.00 0.00 0.00 3.18
1582 1917 2.282603 GCTAAACCGGGGCCACAA 60.283 61.111 5.46 0.00 0.00 3.33
1592 1927 7.982354 ACTAGATGAGTTAACATGAGCTAAACC 59.018 37.037 8.61 0.00 33.13 3.27
1690 2028 4.836825 TGTCTAAGATTCCCAAAGCAGAG 58.163 43.478 0.00 0.00 0.00 3.35
1746 2084 6.970613 GCCTATAATTTGAACTAAAACCACGG 59.029 38.462 0.00 0.00 0.00 4.94
1766 2104 7.423341 AGCCTATAAGTGTCCTATAAGCCTAT 58.577 38.462 0.00 0.00 0.00 2.57
1767 2105 6.801953 AGCCTATAAGTGTCCTATAAGCCTA 58.198 40.000 0.00 0.00 0.00 3.93
1769 2107 6.361768 AAGCCTATAAGTGTCCTATAAGCC 57.638 41.667 0.00 0.00 0.00 4.35
1770 2108 8.750298 TGATAAGCCTATAAGTGTCCTATAAGC 58.250 37.037 0.00 0.00 0.00 3.09
1775 2113 8.639761 GTCTTTGATAAGCCTATAAGTGTCCTA 58.360 37.037 0.00 0.00 0.00 2.94
1776 2114 7.345914 AGTCTTTGATAAGCCTATAAGTGTCCT 59.654 37.037 0.00 0.00 0.00 3.85
1777 2115 7.501844 AGTCTTTGATAAGCCTATAAGTGTCC 58.498 38.462 0.00 0.00 0.00 4.02
1930 2321 4.841441 TTGGGATCAACACTGCCC 57.159 55.556 0.00 0.00 41.08 5.36
1994 2385 0.750850 TCGGGATCGATGAGTTTCCC 59.249 55.000 0.54 5.97 43.75 3.97
2062 2454 5.620206 TCTGCAAAATAGGACAAACTCAGA 58.380 37.500 0.00 0.00 0.00 3.27
2131 2523 7.815068 AGCGAAATGACATTATGAGATAGGTAC 59.185 37.037 0.00 0.00 0.00 3.34
2142 2534 5.296531 TGTGTGCATAGCGAAATGACATTAT 59.703 36.000 0.00 0.00 0.00 1.28
2154 2546 1.225827 CTTGCGTGTGTGCATAGCG 60.226 57.895 0.00 0.00 45.78 4.26
2160 2593 0.030638 ACAAATCCTTGCGTGTGTGC 59.969 50.000 0.00 0.00 35.84 4.57
2164 2597 2.622942 ACAATGACAAATCCTTGCGTGT 59.377 40.909 0.00 0.00 34.71 4.49
2166 2599 2.622942 ACACAATGACAAATCCTTGCGT 59.377 40.909 0.00 0.00 34.71 5.24
2168 2601 3.184986 GCAACACAATGACAAATCCTTGC 59.815 43.478 0.00 0.00 34.71 4.01
2204 2637 9.684448 CTTCAAGTTTATGAGCGATTATAGAGA 57.316 33.333 0.00 0.00 0.00 3.10
2206 2639 8.638873 TCCTTCAAGTTTATGAGCGATTATAGA 58.361 33.333 0.00 0.00 0.00 1.98
2237 2678 5.888161 GGGATGTTACCAGAACTGATGAAAT 59.112 40.000 3.19 0.00 0.00 2.17
2276 2717 4.619973 TGCATGTCTGAAATCCAAACAAC 58.380 39.130 0.00 0.00 0.00 3.32
2304 2745 7.910162 GCATCAAAAAGATCAACTCGCTTATTA 59.090 33.333 0.00 0.00 33.72 0.98
2441 2882 5.441718 AGGAATATTTGCAGTCCTTGAGA 57.558 39.130 0.00 0.00 39.99 3.27
2452 2893 6.688813 CAGCGTAGAAAAGAAGGAATATTTGC 59.311 38.462 0.00 0.00 0.00 3.68
2481 2922 3.435105 TTCAGTGCATTTGTCAACCAC 57.565 42.857 0.00 0.00 0.00 4.16
2650 3092 1.544691 ACCTGTTTAGATCGTGCGAGT 59.455 47.619 0.00 0.00 0.00 4.18
2730 3172 1.172180 ACAGCCCCAACATGAACACG 61.172 55.000 0.00 0.00 0.00 4.49
2754 3196 5.794687 TGAAATATTGCCGTGTAACTCAG 57.205 39.130 0.00 0.00 31.75 3.35
2799 3241 6.598525 TCGTTGACTATTAAATTGCACACAG 58.401 36.000 0.00 0.00 0.00 3.66
2863 3306 5.175856 GTCATGACGCCTGACAAGAATATAC 59.824 44.000 10.69 0.00 42.08 1.47
2960 3422 3.431766 CCAATAAACCAGGACGGAGGTAG 60.432 52.174 0.00 0.00 37.07 3.18
2961 3423 2.502538 CCAATAAACCAGGACGGAGGTA 59.497 50.000 0.00 0.00 37.07 3.08
2962 3424 1.280998 CCAATAAACCAGGACGGAGGT 59.719 52.381 0.00 0.00 40.61 3.85
2963 3425 1.280998 ACCAATAAACCAGGACGGAGG 59.719 52.381 0.00 0.00 38.63 4.30
2964 3426 2.629051 GACCAATAAACCAGGACGGAG 58.371 52.381 0.00 0.00 38.63 4.63
2965 3427 1.279846 GGACCAATAAACCAGGACGGA 59.720 52.381 0.00 0.00 38.63 4.69
2966 3428 1.680860 GGGACCAATAAACCAGGACGG 60.681 57.143 0.00 0.00 42.50 4.79
2967 3429 1.003812 TGGGACCAATAAACCAGGACG 59.996 52.381 0.00 0.00 0.00 4.79
2968 3430 2.891191 TGGGACCAATAAACCAGGAC 57.109 50.000 0.00 0.00 0.00 3.85
2969 3431 4.412060 AAATGGGACCAATAAACCAGGA 57.588 40.909 0.00 0.00 36.27 3.86
2970 3432 7.906199 TTATAAATGGGACCAATAAACCAGG 57.094 36.000 0.00 0.00 36.27 4.45
2975 3437 9.606631 GCACAAATTATAAATGGGACCAATAAA 57.393 29.630 7.79 0.00 0.00 1.40
2976 3438 8.207545 GGCACAAATTATAAATGGGACCAATAA 58.792 33.333 7.79 0.00 0.00 1.40
2977 3439 7.345653 TGGCACAAATTATAAATGGGACCAATA 59.654 33.333 7.14 0.00 31.92 1.90
2978 3440 6.157645 TGGCACAAATTATAAATGGGACCAAT 59.842 34.615 7.14 0.00 31.92 3.16
2979 3441 5.485353 TGGCACAAATTATAAATGGGACCAA 59.515 36.000 7.14 0.00 31.92 3.67
2980 3442 5.026121 TGGCACAAATTATAAATGGGACCA 58.974 37.500 7.14 9.99 31.92 4.02
2981 3443 5.606348 TGGCACAAATTATAAATGGGACC 57.394 39.130 7.14 8.12 31.92 4.46
2991 3453 8.689972 TTTTGGTCAAAATTTGGCACAAATTAT 58.310 25.926 19.54 11.28 38.33 1.28
2992 3454 8.055279 TTTTGGTCAAAATTTGGCACAAATTA 57.945 26.923 19.54 9.47 38.33 1.40
2993 3455 6.928520 TTTTGGTCAAAATTTGGCACAAATT 58.071 28.000 19.54 15.79 38.33 1.82
2994 3456 6.521151 TTTTGGTCAAAATTTGGCACAAAT 57.479 29.167 19.54 7.18 38.33 2.32
2995 3457 5.964958 TTTTGGTCAAAATTTGGCACAAA 57.035 30.435 12.62 15.22 38.33 2.83
2996 3458 5.964958 TTTTTGGTCAAAATTTGGCACAA 57.035 30.435 12.62 10.60 41.06 3.33
3022 3484 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
3023 3485 8.977505 GTTGACATGCATTAACATTTTGTTAGT 58.022 29.630 0.00 0.00 42.93 2.24
3024 3486 8.976471 TGTTGACATGCATTAACATTTTGTTAG 58.024 29.630 13.87 0.00 42.93 2.34
3025 3487 8.877808 TGTTGACATGCATTAACATTTTGTTA 57.122 26.923 13.87 0.00 41.45 2.41
3026 3488 7.783090 TGTTGACATGCATTAACATTTTGTT 57.217 28.000 13.87 0.00 43.88 2.83
3027 3489 7.783090 TTGTTGACATGCATTAACATTTTGT 57.217 28.000 16.96 3.14 33.56 2.83
3028 3490 9.499585 TTTTTGTTGACATGCATTAACATTTTG 57.500 25.926 16.96 0.12 33.56 2.44
3033 3495 9.317936 TGTAATTTTTGTTGACATGCATTAACA 57.682 25.926 13.87 13.87 0.00 2.41
3036 3498 8.858186 CGATGTAATTTTTGTTGACATGCATTA 58.142 29.630 0.00 0.00 31.03 1.90
3037 3499 7.621841 GCGATGTAATTTTTGTTGACATGCATT 60.622 33.333 0.00 0.00 31.03 3.56
3038 3500 6.183360 GCGATGTAATTTTTGTTGACATGCAT 60.183 34.615 0.00 0.00 31.03 3.96
3039 3501 5.118357 GCGATGTAATTTTTGTTGACATGCA 59.882 36.000 0.00 0.00 31.03 3.96
3040 3502 5.345741 AGCGATGTAATTTTTGTTGACATGC 59.654 36.000 0.00 0.00 31.03 4.06
3041 3503 6.183360 CCAGCGATGTAATTTTTGTTGACATG 60.183 38.462 0.00 0.00 31.03 3.21
3042 3504 5.863397 CCAGCGATGTAATTTTTGTTGACAT 59.137 36.000 0.00 0.00 33.52 3.06
3043 3505 5.009110 TCCAGCGATGTAATTTTTGTTGACA 59.991 36.000 0.00 0.00 0.00 3.58
3044 3506 5.457140 TCCAGCGATGTAATTTTTGTTGAC 58.543 37.500 0.00 0.00 0.00 3.18
3045 3507 5.697473 TCCAGCGATGTAATTTTTGTTGA 57.303 34.783 0.00 0.00 0.00 3.18
3046 3508 6.237279 CGAATCCAGCGATGTAATTTTTGTTG 60.237 38.462 0.00 0.00 0.00 3.33
3047 3509 5.799936 CGAATCCAGCGATGTAATTTTTGTT 59.200 36.000 0.00 0.00 0.00 2.83
3048 3510 5.106317 ACGAATCCAGCGATGTAATTTTTGT 60.106 36.000 0.00 0.00 0.00 2.83
3049 3511 5.331902 ACGAATCCAGCGATGTAATTTTTG 58.668 37.500 0.00 0.00 0.00 2.44
3050 3512 5.560966 ACGAATCCAGCGATGTAATTTTT 57.439 34.783 0.00 0.00 0.00 1.94
3051 3513 6.861065 ATACGAATCCAGCGATGTAATTTT 57.139 33.333 0.00 0.00 0.00 1.82
3052 3514 6.861065 AATACGAATCCAGCGATGTAATTT 57.139 33.333 0.00 0.00 0.00 1.82
3053 3515 6.481976 TCAAATACGAATCCAGCGATGTAATT 59.518 34.615 0.00 0.00 0.00 1.40
3054 3516 5.989168 TCAAATACGAATCCAGCGATGTAAT 59.011 36.000 0.00 0.00 0.00 1.89
3055 3517 5.353111 TCAAATACGAATCCAGCGATGTAA 58.647 37.500 0.00 0.00 0.00 2.41
3056 3518 4.939271 TCAAATACGAATCCAGCGATGTA 58.061 39.130 0.00 0.00 0.00 2.29
3057 3519 3.792401 TCAAATACGAATCCAGCGATGT 58.208 40.909 0.00 0.00 0.00 3.06
3058 3520 4.033932 TGTTCAAATACGAATCCAGCGATG 59.966 41.667 0.00 0.00 0.00 3.84
3059 3521 4.188462 TGTTCAAATACGAATCCAGCGAT 58.812 39.130 0.00 0.00 0.00 4.58
3060 3522 3.591023 TGTTCAAATACGAATCCAGCGA 58.409 40.909 0.00 0.00 0.00 4.93
3061 3523 4.536364 ATGTTCAAATACGAATCCAGCG 57.464 40.909 0.00 0.00 0.00 5.18
3062 3524 6.604735 ACTATGTTCAAATACGAATCCAGC 57.395 37.500 0.00 0.00 0.00 4.85
3063 3525 9.840427 AAAAACTATGTTCAAATACGAATCCAG 57.160 29.630 0.00 0.00 0.00 3.86
3097 3559 9.926158 AATGTTCTTGCATGTCATAACAAATTA 57.074 25.926 15.54 0.00 39.30 1.40
3098 3560 8.836268 AATGTTCTTGCATGTCATAACAAATT 57.164 26.923 15.54 8.87 39.30 1.82
3099 3561 8.836268 AAATGTTCTTGCATGTCATAACAAAT 57.164 26.923 15.54 9.58 39.30 2.32
3100 3562 8.549548 CAAAATGTTCTTGCATGTCATAACAAA 58.450 29.630 15.54 0.00 39.30 2.83
3101 3563 7.710044 ACAAAATGTTCTTGCATGTCATAACAA 59.290 29.630 15.54 2.30 39.30 2.83
3102 3564 7.208777 ACAAAATGTTCTTGCATGTCATAACA 58.791 30.769 14.68 14.68 40.38 2.41
3103 3565 7.642071 ACAAAATGTTCTTGCATGTCATAAC 57.358 32.000 11.04 2.55 0.00 1.89
3104 3566 9.409312 CTAACAAAATGTTCTTGCATGTCATAA 57.591 29.630 0.00 0.00 40.22 1.90
3105 3567 8.575589 ACTAACAAAATGTTCTTGCATGTCATA 58.424 29.630 0.00 0.00 40.22 2.15
3106 3568 7.436118 ACTAACAAAATGTTCTTGCATGTCAT 58.564 30.769 0.00 3.90 40.22 3.06
3107 3569 6.804677 ACTAACAAAATGTTCTTGCATGTCA 58.195 32.000 0.00 1.80 40.22 3.58
3108 3570 7.698836 AACTAACAAAATGTTCTTGCATGTC 57.301 32.000 0.00 0.00 40.22 3.06
3109 3571 9.593134 TTTAACTAACAAAATGTTCTTGCATGT 57.407 25.926 0.00 0.00 40.22 3.21
3131 3593 9.307121 CGTGCCAAAATTTGACCATATATTTAA 57.693 29.630 7.37 0.00 0.00 1.52
3132 3594 8.687242 TCGTGCCAAAATTTGACCATATATTTA 58.313 29.630 7.37 0.00 0.00 1.40
3133 3595 7.551585 TCGTGCCAAAATTTGACCATATATTT 58.448 30.769 7.37 0.00 0.00 1.40
3134 3596 7.106439 TCGTGCCAAAATTTGACCATATATT 57.894 32.000 7.37 0.00 0.00 1.28
3135 3597 6.707440 TCGTGCCAAAATTTGACCATATAT 57.293 33.333 7.37 0.00 0.00 0.86
3136 3598 6.516739 TTCGTGCCAAAATTTGACCATATA 57.483 33.333 7.37 0.00 0.00 0.86
3137 3599 5.398603 TTCGTGCCAAAATTTGACCATAT 57.601 34.783 7.37 0.00 0.00 1.78
3138 3600 4.855715 TTCGTGCCAAAATTTGACCATA 57.144 36.364 7.37 0.00 0.00 2.74
3139 3601 3.742433 TTCGTGCCAAAATTTGACCAT 57.258 38.095 7.37 0.00 0.00 3.55
3140 3602 3.526931 TTTCGTGCCAAAATTTGACCA 57.473 38.095 7.37 1.35 0.00 4.02
3141 3603 4.985409 TGTATTTCGTGCCAAAATTTGACC 59.015 37.500 7.37 0.00 0.00 4.02
3142 3604 6.517914 TTGTATTTCGTGCCAAAATTTGAC 57.482 33.333 7.37 0.00 0.00 3.18
3143 3605 6.146837 CCATTGTATTTCGTGCCAAAATTTGA 59.853 34.615 7.37 0.00 0.00 2.69
3144 3606 6.305639 CCATTGTATTTCGTGCCAAAATTTG 58.694 36.000 0.00 0.00 0.00 2.32
3145 3607 5.411053 CCCATTGTATTTCGTGCCAAAATTT 59.589 36.000 0.00 0.00 0.00 1.82
3146 3608 4.934602 CCCATTGTATTTCGTGCCAAAATT 59.065 37.500 0.00 0.00 0.00 1.82
3147 3609 4.502962 CCCATTGTATTTCGTGCCAAAAT 58.497 39.130 0.00 0.00 0.00 1.82
3148 3610 3.306364 CCCCATTGTATTTCGTGCCAAAA 60.306 43.478 0.00 0.00 0.00 2.44
3149 3611 2.232452 CCCCATTGTATTTCGTGCCAAA 59.768 45.455 0.00 0.00 0.00 3.28
3150 3612 1.821753 CCCCATTGTATTTCGTGCCAA 59.178 47.619 0.00 0.00 0.00 4.52
3151 3613 1.004862 TCCCCATTGTATTTCGTGCCA 59.995 47.619 0.00 0.00 0.00 4.92
3152 3614 1.404035 GTCCCCATTGTATTTCGTGCC 59.596 52.381 0.00 0.00 0.00 5.01
3153 3615 1.404035 GGTCCCCATTGTATTTCGTGC 59.596 52.381 0.00 0.00 0.00 5.34
3154 3616 2.717390 TGGTCCCCATTGTATTTCGTG 58.283 47.619 0.00 0.00 0.00 4.35
3155 3617 3.443145 TTGGTCCCCATTGTATTTCGT 57.557 42.857 0.00 0.00 31.53 3.85
3156 3618 6.270064 GTTTATTGGTCCCCATTGTATTTCG 58.730 40.000 0.00 0.00 31.53 3.46
3157 3619 6.155393 TGGTTTATTGGTCCCCATTGTATTTC 59.845 38.462 0.00 0.00 31.53 2.17
3158 3620 6.026186 TGGTTTATTGGTCCCCATTGTATTT 58.974 36.000 0.00 0.00 31.53 1.40
3159 3621 5.594777 TGGTTTATTGGTCCCCATTGTATT 58.405 37.500 0.00 0.00 31.53 1.89
3160 3622 5.208121 CTGGTTTATTGGTCCCCATTGTAT 58.792 41.667 0.00 0.00 31.53 2.29
3161 3623 4.570933 CCTGGTTTATTGGTCCCCATTGTA 60.571 45.833 0.00 0.00 31.53 2.41
3162 3624 3.440127 CTGGTTTATTGGTCCCCATTGT 58.560 45.455 0.00 0.00 31.53 2.71
3163 3625 2.765699 CCTGGTTTATTGGTCCCCATTG 59.234 50.000 0.00 0.00 31.53 2.82
3164 3626 2.657459 TCCTGGTTTATTGGTCCCCATT 59.343 45.455 0.00 0.00 31.53 3.16
3165 3627 2.024369 GTCCTGGTTTATTGGTCCCCAT 60.024 50.000 0.00 0.00 31.53 4.00
3166 3628 1.356398 GTCCTGGTTTATTGGTCCCCA 59.644 52.381 0.00 0.00 0.00 4.96
3167 3629 1.680860 CGTCCTGGTTTATTGGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
3168 3630 1.680860 CCGTCCTGGTTTATTGGTCCC 60.681 57.143 0.00 0.00 0.00 4.46
3169 3631 1.279846 TCCGTCCTGGTTTATTGGTCC 59.720 52.381 0.00 0.00 39.52 4.46
3170 3632 2.629051 CTCCGTCCTGGTTTATTGGTC 58.371 52.381 0.00 0.00 39.52 4.02
3171 3633 1.280998 CCTCCGTCCTGGTTTATTGGT 59.719 52.381 0.00 0.00 39.52 3.67
3172 3634 1.280998 ACCTCCGTCCTGGTTTATTGG 59.719 52.381 0.00 0.00 39.52 3.16
3173 3635 2.781681 ACCTCCGTCCTGGTTTATTG 57.218 50.000 0.00 0.00 39.52 1.90
3174 3636 3.447950 ACTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
3175 3637 3.111741 ACTACCTCCGTCCTGGTTTAT 57.888 47.619 0.00 0.00 39.52 1.40
3176 3638 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
3177 3639 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
3178 3640 2.764572 CAATACTACCTCCGTCCTGGTT 59.235 50.000 0.00 0.00 39.52 3.67
3179 3641 2.385803 CAATACTACCTCCGTCCTGGT 58.614 52.381 0.00 0.00 39.52 4.00
3180 3642 1.068741 GCAATACTACCTCCGTCCTGG 59.931 57.143 0.00 0.00 40.09 4.45
3181 3643 1.068741 GGCAATACTACCTCCGTCCTG 59.931 57.143 0.00 0.00 0.00 3.86
3182 3644 1.342674 TGGCAATACTACCTCCGTCCT 60.343 52.381 0.00 0.00 0.00 3.85
3183 3645 1.117150 TGGCAATACTACCTCCGTCC 58.883 55.000 0.00 0.00 0.00 4.79
3184 3646 4.803098 ATATGGCAATACTACCTCCGTC 57.197 45.455 0.00 0.00 0.00 4.79
3185 3647 6.869206 ATAATATGGCAATACTACCTCCGT 57.131 37.500 0.00 0.00 0.00 4.69
3186 3648 8.450964 CAAAATAATATGGCAATACTACCTCCG 58.549 37.037 0.00 0.00 0.00 4.63
3187 3649 9.515226 TCAAAATAATATGGCAATACTACCTCC 57.485 33.333 0.00 0.00 0.00 4.30
3266 3728 7.160726 ACAATGCAAACAACCAAGCTAAATAT 58.839 30.769 0.00 0.00 0.00 1.28
3272 3734 2.985957 ACAATGCAAACAACCAAGCT 57.014 40.000 0.00 0.00 0.00 3.74
3294 3756 8.044908 AGAAATATAAGCTCGTTTACAAAGGGA 58.955 33.333 0.00 0.00 0.00 4.20
3295 3757 8.209917 AGAAATATAAGCTCGTTTACAAAGGG 57.790 34.615 0.00 0.00 0.00 3.95
3303 3765 9.099454 CCTCTGTAAAGAAATATAAGCTCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
3304 3766 7.711339 CCCTCTGTAAAGAAATATAAGCTCGTT 59.289 37.037 0.00 0.00 0.00 3.85
3305 3767 7.069578 TCCCTCTGTAAAGAAATATAAGCTCGT 59.930 37.037 0.00 0.00 0.00 4.18
3306 3768 7.434492 TCCCTCTGTAAAGAAATATAAGCTCG 58.566 38.462 0.00 0.00 0.00 5.03
3307 3769 8.425703 ACTCCCTCTGTAAAGAAATATAAGCTC 58.574 37.037 0.00 0.00 0.00 4.09
3308 3770 8.325477 ACTCCCTCTGTAAAGAAATATAAGCT 57.675 34.615 0.00 0.00 0.00 3.74
3322 3784 9.144298 CCAGTAAATTAAGATACTCCCTCTGTA 57.856 37.037 1.10 0.00 30.09 2.74
3323 3785 7.844779 TCCAGTAAATTAAGATACTCCCTCTGT 59.155 37.037 1.10 0.00 30.09 3.41
3324 3786 8.251383 TCCAGTAAATTAAGATACTCCCTCTG 57.749 38.462 1.10 0.00 30.09 3.35
3325 3787 8.855804 TTCCAGTAAATTAAGATACTCCCTCT 57.144 34.615 1.10 0.00 30.09 3.69
3461 6976 6.944290 AGAAAGTAAAGTTAGCCCGGTTAAAT 59.056 34.615 0.00 0.00 0.00 1.40
3467 6982 3.439129 CCAAGAAAGTAAAGTTAGCCCGG 59.561 47.826 0.00 0.00 0.00 5.73
3468 6983 4.320870 TCCAAGAAAGTAAAGTTAGCCCG 58.679 43.478 0.00 0.00 0.00 6.13
3470 6985 4.142881 CGCTCCAAGAAAGTAAAGTTAGCC 60.143 45.833 0.00 0.00 0.00 3.93
3669 7201 3.673746 TGTGAGCAGAAACTTCAAACG 57.326 42.857 0.00 0.00 0.00 3.60
3671 7203 5.647658 TCTCTTTGTGAGCAGAAACTTCAAA 59.352 36.000 0.00 0.00 42.38 2.69
3696 7229 9.862585 CAAAAACCATTTTCTACAAACAATAGC 57.137 29.630 0.00 0.00 36.62 2.97
3704 7237 4.410555 AGGCCCAAAAACCATTTTCTACAA 59.589 37.500 0.00 0.00 36.62 2.41
3706 7239 4.314961 CAGGCCCAAAAACCATTTTCTAC 58.685 43.478 0.00 0.00 36.62 2.59
3707 7240 3.244387 GCAGGCCCAAAAACCATTTTCTA 60.244 43.478 0.00 0.00 36.62 2.10
3708 7241 2.487086 GCAGGCCCAAAAACCATTTTCT 60.487 45.455 0.00 0.00 36.62 2.52
3709 7242 1.879380 GCAGGCCCAAAAACCATTTTC 59.121 47.619 0.00 0.00 36.62 2.29
3710 7243 1.494296 AGCAGGCCCAAAAACCATTTT 59.506 42.857 0.00 0.00 39.30 1.82
3711 7244 1.072173 GAGCAGGCCCAAAAACCATTT 59.928 47.619 0.00 0.00 0.00 2.32
3712 7245 0.686789 GAGCAGGCCCAAAAACCATT 59.313 50.000 0.00 0.00 0.00 3.16
3713 7246 1.194121 GGAGCAGGCCCAAAAACCAT 61.194 55.000 0.00 0.00 0.00 3.55
3714 7247 1.836604 GGAGCAGGCCCAAAAACCA 60.837 57.895 0.00 0.00 0.00 3.67
3715 7248 1.533994 AGGAGCAGGCCCAAAAACC 60.534 57.895 0.00 0.00 0.00 3.27
3716 7249 0.540597 AGAGGAGCAGGCCCAAAAAC 60.541 55.000 0.00 0.00 0.00 2.43
3726 7329 4.081198 ACAAGGACAGATAAAGAGGAGCAG 60.081 45.833 0.00 0.00 0.00 4.24
3769 7377 1.527311 GAAGACGAACTTGCCACTGAC 59.473 52.381 0.00 0.00 39.13 3.51
3786 7394 4.676546 TGAATATCTGACTGCACGAGAAG 58.323 43.478 0.00 0.00 0.00 2.85
3790 7398 4.926140 AGATGAATATCTGACTGCACGA 57.074 40.909 0.00 0.00 42.04 4.35
3848 7457 6.154445 CACTCAGAAAAGAAATGTCCAATGG 58.846 40.000 0.00 0.00 0.00 3.16
3863 7472 4.916041 ATCTCATTCCCACACTCAGAAA 57.084 40.909 0.00 0.00 0.00 2.52
3884 7493 2.280103 TGGTAAGGACCCAGGCAATAA 58.720 47.619 0.00 0.00 46.32 1.40
3968 7579 5.140177 CACTGCAATTCGTGTAAGAACTTC 58.860 41.667 0.00 0.00 32.39 3.01
4014 7627 4.953579 GGGAGCAATAATAAAGTGTGGGAA 59.046 41.667 0.00 0.00 0.00 3.97
4016 7629 4.277476 TGGGAGCAATAATAAAGTGTGGG 58.723 43.478 0.00 0.00 0.00 4.61
4018 7631 6.949352 ATCTGGGAGCAATAATAAAGTGTG 57.051 37.500 0.00 0.00 0.00 3.82
4048 7661 4.647564 ACAAAAGATGACAGGACAGGAT 57.352 40.909 0.00 0.00 0.00 3.24
4056 7669 5.541845 TGGACAGTCTACAAAAGATGACAG 58.458 41.667 0.00 0.00 36.36 3.51
4057 7670 5.545063 TGGACAGTCTACAAAAGATGACA 57.455 39.130 0.00 0.00 36.36 3.58
4058 7671 6.223852 TCTTGGACAGTCTACAAAAGATGAC 58.776 40.000 0.00 0.00 36.36 3.06
4059 7672 6.267699 TCTCTTGGACAGTCTACAAAAGATGA 59.732 38.462 0.00 1.54 36.36 2.92
4060 7673 6.367422 GTCTCTTGGACAGTCTACAAAAGATG 59.633 42.308 0.00 0.00 43.94 2.90
4163 7776 8.099537 CCCTCTTAGACAGCATAATACAATGAT 58.900 37.037 0.00 0.00 0.00 2.45
4195 7808 2.165030 CCAAAAGTTAGCTCTGGCATGG 59.835 50.000 0.00 0.00 41.70 3.66
4199 7812 5.644977 AATAACCAAAAGTTAGCTCTGGC 57.355 39.130 7.37 0.00 44.07 4.85
4453 8145 1.960689 GTTGGCTGGGTGTGTGTAATT 59.039 47.619 0.00 0.00 0.00 1.40
4498 8192 7.876936 AGGAAGTAGTACAATCGAGTTATGA 57.123 36.000 2.52 0.00 0.00 2.15
4524 8218 0.689080 TCAAACCAAAAGGCCAGGCA 60.689 50.000 15.19 0.00 0.00 4.75
4525 8219 0.686789 ATCAAACCAAAAGGCCAGGC 59.313 50.000 5.01 1.26 0.00 4.85
4592 8288 6.422333 TGACCATGAGCCACTAATGATAAAA 58.578 36.000 0.00 0.00 0.00 1.52
4598 8294 3.812262 TGATGACCATGAGCCACTAATG 58.188 45.455 0.00 0.00 0.00 1.90
4615 8311 3.132629 GCAAACAGCAGAGTGATGATG 57.867 47.619 0.00 0.00 44.79 3.07
4635 8331 0.178767 TGGAAGCATCTGATCCACGG 59.821 55.000 0.00 0.00 38.30 4.94
4669 8368 4.027674 TCTAGCAATGTGGCCTTTACAA 57.972 40.909 3.32 0.00 0.00 2.41
4684 8383 6.992715 GGTTGCCTAATCTTTATCTTCTAGCA 59.007 38.462 0.00 0.00 0.00 3.49
4779 8493 9.080097 AGTCTAGTGAAAGTGAACTATTGTACT 57.920 33.333 0.00 0.00 0.00 2.73
4785 8499 9.523168 AGTCTAAGTCTAGTGAAAGTGAACTAT 57.477 33.333 0.00 0.00 0.00 2.12
4805 8520 6.598503 TGTCATCTATCCTTACGGAGTCTAA 58.401 40.000 0.00 0.00 44.06 2.10
4834 8549 0.839946 AACAGTTGTCTGGCTGTCCT 59.160 50.000 0.00 0.00 44.21 3.85
4858 8573 6.091169 GGTTCCGAAAACACGTAAATAGATGA 59.909 38.462 0.00 0.00 0.00 2.92
4909 8626 1.406751 CCACCAATGTCCGATGCACTA 60.407 52.381 0.00 0.00 0.00 2.74
4972 8689 5.816258 CAGAACATGATGACATAGAAGCACT 59.184 40.000 0.00 0.00 35.09 4.40
4975 8692 5.121811 ACCAGAACATGATGACATAGAAGC 58.878 41.667 0.00 0.00 35.09 3.86
4979 8696 8.267620 TGTAAAACCAGAACATGATGACATAG 57.732 34.615 0.00 0.00 35.09 2.23
4985 8702 5.156355 GCACTGTAAAACCAGAACATGATG 58.844 41.667 0.00 0.00 36.30 3.07
4987 8704 3.568007 GGCACTGTAAAACCAGAACATGA 59.432 43.478 0.00 0.00 36.30 3.07
5126 8856 4.688511 TTTACACTTGTGTTGTGTGGAC 57.311 40.909 11.80 0.00 46.54 4.02
5197 8928 1.070175 GTTTACAACAGTGTGCGCGAT 60.070 47.619 12.10 0.00 38.82 4.58
5198 8929 0.302288 GTTTACAACAGTGTGCGCGA 59.698 50.000 12.10 0.00 38.82 5.87
5270 9001 4.207165 AGCACAATTCTACAGTGGTTTGT 58.793 39.130 0.00 3.36 40.68 2.83
5290 9021 6.963805 GCTTGTCAAGAGAATAACAACATAGC 59.036 38.462 16.99 0.00 0.00 2.97
5316 9139 1.367471 GCCAGAAACAAACCTGCCC 59.633 57.895 0.00 0.00 0.00 5.36
5402 9226 7.426929 AAATTCAAGTATGTGTGTCTCACTC 57.573 36.000 6.60 0.00 46.27 3.51
5408 9232 7.462109 TTTGCAAAATTCAAGTATGTGTGTC 57.538 32.000 10.02 0.00 0.00 3.67
5441 9269 5.869753 AACATCAGTAACAGCACAATCTC 57.130 39.130 0.00 0.00 0.00 2.75
5463 9292 2.503765 TCCAAGATTCATCGCCCACTAA 59.496 45.455 0.00 0.00 0.00 2.24
5471 9300 1.242076 GGCCCATCCAAGATTCATCG 58.758 55.000 0.00 0.00 34.01 3.84
5492 9353 2.106566 TGCAAGACCAAAGGCTCAAAA 58.893 42.857 0.00 0.00 0.00 2.44
5583 9444 3.444742 TGACGGCTTCTCGATACCTTTTA 59.555 43.478 0.00 0.00 0.00 1.52
5591 9452 2.743636 TCTTTTGACGGCTTCTCGAT 57.256 45.000 0.00 0.00 0.00 3.59
5641 9505 0.457851 ACCATCTCGAGCTAGTGCAC 59.542 55.000 9.40 9.40 42.74 4.57
5663 9527 5.880054 ATGTACAAGACAGTGTAAATGGC 57.120 39.130 0.00 0.00 42.94 4.40
5675 9539 6.935208 AGTCCTTTTCAGGTTATGTACAAGAC 59.065 38.462 0.00 1.23 41.69 3.01
5748 9736 2.262915 CTTTCTCCTCGCCGTGCT 59.737 61.111 0.00 0.00 0.00 4.40
5782 9770 4.082190 ACGATCAATCCTCTTGTTCTCGAA 60.082 41.667 0.00 0.00 0.00 3.71
5784 9772 3.775202 ACGATCAATCCTCTTGTTCTCG 58.225 45.455 0.00 0.00 0.00 4.04
5949 9945 2.027561 TGTTTATCGTAGCAAGGGCACT 60.028 45.455 0.00 0.00 44.61 4.40
5950 9946 2.352388 TGTTTATCGTAGCAAGGGCAC 58.648 47.619 0.00 0.00 44.61 5.01
5951 9947 2.772077 TGTTTATCGTAGCAAGGGCA 57.228 45.000 0.00 0.00 44.61 5.36
5952 9948 4.318546 CGTTATGTTTATCGTAGCAAGGGC 60.319 45.833 0.00 0.00 41.61 5.19
5953 9949 5.045215 TCGTTATGTTTATCGTAGCAAGGG 58.955 41.667 0.00 0.00 0.00 3.95
5954 9950 5.747197 ACTCGTTATGTTTATCGTAGCAAGG 59.253 40.000 0.00 0.00 0.00 3.61
6014 10029 2.894240 TAATCCGACGGCGTGGAAGC 62.894 60.000 26.59 9.92 37.90 3.86
6015 10030 0.458889 TTAATCCGACGGCGTGGAAG 60.459 55.000 26.59 12.31 37.90 3.46
6020 10035 2.981997 GGAATTAATCCGACGGCGT 58.018 52.632 14.65 14.65 38.79 5.68
6029 10044 1.515521 CCGGCCGCTGGGAATTAATC 61.516 60.000 22.85 0.00 34.06 1.75
6030 10045 1.528309 CCGGCCGCTGGGAATTAAT 60.528 57.895 22.85 0.00 34.06 1.40
6031 10046 2.124487 CCGGCCGCTGGGAATTAA 60.124 61.111 22.85 0.00 34.06 1.40
6032 10047 3.404438 ACCGGCCGCTGGGAATTA 61.404 61.111 22.85 0.00 33.40 1.40
6061 10076 2.568956 CCATATCACTCATCCGGTGGAT 59.431 50.000 0.00 0.00 44.21 3.41
6062 10077 1.970640 CCATATCACTCATCCGGTGGA 59.029 52.381 0.00 0.00 35.61 4.02
6063 10078 1.694150 ACCATATCACTCATCCGGTGG 59.306 52.381 0.00 0.00 35.61 4.61
6064 10079 2.630098 AGACCATATCACTCATCCGGTG 59.370 50.000 0.00 0.00 36.17 4.94
6065 10080 2.964209 AGACCATATCACTCATCCGGT 58.036 47.619 0.00 0.00 0.00 5.28
6066 10081 4.280929 TGTTAGACCATATCACTCATCCGG 59.719 45.833 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.