Multiple sequence alignment - TraesCS7D01G381800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G381800 chr7D 100.000 1660 0 0 1 1660 495833765 495832106 0.000000e+00 3066.0
1 TraesCS7D01G381800 chr7D 100.000 265 0 0 2023 2287 495831743 495831479 7.340000e-135 490.0
2 TraesCS7D01G381800 chr7A 85.366 1312 116 43 406 1660 561600836 561599544 0.000000e+00 1290.0
3 TraesCS7D01G381800 chr7A 90.637 267 14 1 2023 2278 561599501 561599235 6.050000e-91 344.0
4 TraesCS7D01G381800 chr7B 84.928 1181 114 33 437 1599 524060198 524059064 0.000000e+00 1136.0
5 TraesCS7D01G381800 chr7B 94.203 276 5 1 2023 2287 524059057 524058782 5.880000e-111 411.0
6 TraesCS7D01G381800 chr3B 100.000 30 0 0 481 510 64278765 64278736 3.170000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G381800 chr7D 495831479 495833765 2286 True 1778.0 3066 100.0000 1 2287 2 chr7D.!!$R1 2286
1 TraesCS7D01G381800 chr7A 561599235 561600836 1601 True 817.0 1290 88.0015 406 2278 2 chr7A.!!$R1 1872
2 TraesCS7D01G381800 chr7B 524058782 524060198 1416 True 773.5 1136 89.5655 437 2287 2 chr7B.!!$R1 1850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.033405 TCAACCTACCTCCTCTCCGG 60.033 60.0 0.0 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 1394 0.172578 CACATTGGCTGCATCACCAG 59.827 55.0 0.5 0.0 37.24 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.436115 CGTTTTCCGCCTCCCTCC 60.436 66.667 0.00 0.00 0.00 4.30
27 28 2.045242 GTTTTCCGCCTCCCTCCC 60.045 66.667 0.00 0.00 0.00 4.30
28 29 2.204090 TTTTCCGCCTCCCTCCCT 60.204 61.111 0.00 0.00 0.00 4.20
29 30 2.298661 TTTTCCGCCTCCCTCCCTC 61.299 63.158 0.00 0.00 0.00 4.30
30 31 4.798682 TTCCGCCTCCCTCCCTCC 62.799 72.222 0.00 0.00 0.00 4.30
33 34 4.888325 CGCCTCCCTCCCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
34 35 3.174265 GCCTCCCTCCCTCCCATG 61.174 72.222 0.00 0.00 0.00 3.66
35 36 2.705410 CCTCCCTCCCTCCCATGA 59.295 66.667 0.00 0.00 0.00 3.07
36 37 1.004758 CCTCCCTCCCTCCCATGAA 59.995 63.158 0.00 0.00 0.00 2.57
37 38 0.624500 CCTCCCTCCCTCCCATGAAA 60.625 60.000 0.00 0.00 0.00 2.69
38 39 0.548510 CTCCCTCCCTCCCATGAAAC 59.451 60.000 0.00 0.00 0.00 2.78
39 40 0.919289 TCCCTCCCTCCCATGAAACC 60.919 60.000 0.00 0.00 0.00 3.27
40 41 1.615262 CCTCCCTCCCATGAAACCC 59.385 63.158 0.00 0.00 0.00 4.11
41 42 1.214305 CCTCCCTCCCATGAAACCCA 61.214 60.000 0.00 0.00 0.00 4.51
42 43 0.929244 CTCCCTCCCATGAAACCCAT 59.071 55.000 0.00 0.00 35.44 4.00
43 44 2.135189 CTCCCTCCCATGAAACCCATA 58.865 52.381 0.00 0.00 33.31 2.74
44 45 2.513738 CTCCCTCCCATGAAACCCATAA 59.486 50.000 0.00 0.00 33.31 1.90
45 46 2.513738 TCCCTCCCATGAAACCCATAAG 59.486 50.000 0.00 0.00 33.31 1.73
46 47 2.310538 CCTCCCATGAAACCCATAAGC 58.689 52.381 0.00 0.00 33.31 3.09
47 48 2.091665 CCTCCCATGAAACCCATAAGCT 60.092 50.000 0.00 0.00 33.31 3.74
48 49 3.138283 CCTCCCATGAAACCCATAAGCTA 59.862 47.826 0.00 0.00 33.31 3.32
49 50 4.392940 CTCCCATGAAACCCATAAGCTAG 58.607 47.826 0.00 0.00 33.31 3.42
50 51 3.138283 TCCCATGAAACCCATAAGCTAGG 59.862 47.826 0.00 0.00 33.31 3.02
56 57 2.133195 CCCATAAGCTAGGGCGACA 58.867 57.895 5.93 0.00 44.37 4.35
57 58 0.034059 CCCATAAGCTAGGGCGACAG 59.966 60.000 5.93 0.00 44.37 3.51
58 59 0.753262 CCATAAGCTAGGGCGACAGT 59.247 55.000 0.00 0.00 44.37 3.55
59 60 1.539065 CCATAAGCTAGGGCGACAGTG 60.539 57.143 0.00 0.00 44.37 3.66
60 61 1.137086 CATAAGCTAGGGCGACAGTGT 59.863 52.381 0.00 0.00 44.37 3.55
61 62 0.815734 TAAGCTAGGGCGACAGTGTC 59.184 55.000 13.56 13.56 44.37 3.67
62 63 1.185618 AAGCTAGGGCGACAGTGTCA 61.186 55.000 22.66 2.13 44.37 3.58
63 64 1.185618 AGCTAGGGCGACAGTGTCAA 61.186 55.000 22.66 2.14 44.37 3.18
64 65 1.014564 GCTAGGGCGACAGTGTCAAC 61.015 60.000 22.66 13.58 32.09 3.18
65 66 0.389948 CTAGGGCGACAGTGTCAACC 60.390 60.000 22.66 21.32 32.09 3.77
66 67 0.830444 TAGGGCGACAGTGTCAACCT 60.830 55.000 28.54 28.54 40.05 3.50
67 68 0.830444 AGGGCGACAGTGTCAACCTA 60.830 55.000 26.08 0.00 36.84 3.08
68 69 0.669625 GGGCGACAGTGTCAACCTAC 60.670 60.000 24.28 10.90 31.58 3.18
69 70 0.669625 GGCGACAGTGTCAACCTACC 60.670 60.000 22.66 9.76 32.09 3.18
70 71 0.317479 GCGACAGTGTCAACCTACCT 59.683 55.000 22.66 0.00 32.09 3.08
71 72 1.669211 GCGACAGTGTCAACCTACCTC 60.669 57.143 22.66 0.00 32.09 3.85
72 73 1.067776 CGACAGTGTCAACCTACCTCC 60.068 57.143 22.66 0.00 32.09 4.30
73 74 2.249139 GACAGTGTCAACCTACCTCCT 58.751 52.381 18.54 0.00 32.09 3.69
74 75 2.231721 GACAGTGTCAACCTACCTCCTC 59.768 54.545 18.54 0.00 32.09 3.71
75 76 2.158295 ACAGTGTCAACCTACCTCCTCT 60.158 50.000 0.00 0.00 0.00 3.69
76 77 2.494073 CAGTGTCAACCTACCTCCTCTC 59.506 54.545 0.00 0.00 0.00 3.20
77 78 1.826096 GTGTCAACCTACCTCCTCTCC 59.174 57.143 0.00 0.00 0.00 3.71
78 79 1.104630 GTCAACCTACCTCCTCTCCG 58.895 60.000 0.00 0.00 0.00 4.63
79 80 0.033405 TCAACCTACCTCCTCTCCGG 60.033 60.000 0.00 0.00 0.00 5.14
80 81 0.324460 CAACCTACCTCCTCTCCGGT 60.324 60.000 0.00 0.00 37.31 5.28
81 82 0.324460 AACCTACCTCCTCTCCGGTG 60.324 60.000 0.00 0.00 34.76 4.94
82 83 1.212934 ACCTACCTCCTCTCCGGTGA 61.213 60.000 6.00 6.00 34.76 4.02
83 84 0.466555 CCTACCTCCTCTCCGGTGAG 60.467 65.000 23.74 23.74 40.17 3.51
84 85 0.547075 CTACCTCCTCTCCGGTGAGA 59.453 60.000 30.40 13.47 45.39 3.27
85 86 1.144093 CTACCTCCTCTCCGGTGAGAT 59.856 57.143 30.40 16.66 46.33 2.75
86 87 0.106419 ACCTCCTCTCCGGTGAGATC 60.106 60.000 30.40 0.00 46.33 2.75
87 88 0.106469 CCTCCTCTCCGGTGAGATCA 60.106 60.000 30.40 15.02 46.33 2.92
88 89 1.028905 CTCCTCTCCGGTGAGATCAC 58.971 60.000 30.40 4.33 46.33 3.06
89 90 0.748367 TCCTCTCCGGTGAGATCACG 60.748 60.000 30.40 15.73 46.33 4.35
90 91 0.748367 CCTCTCCGGTGAGATCACGA 60.748 60.000 30.40 0.00 46.33 4.35
91 92 0.378962 CTCTCCGGTGAGATCACGAC 59.621 60.000 25.93 0.00 46.33 4.34
92 93 2.941283 CTCTCCGGTGAGATCACGACC 61.941 61.905 25.93 0.00 46.33 4.79
97 98 3.742983 GTGAGATCACGACCCCTTC 57.257 57.895 0.00 0.00 37.10 3.46
98 99 1.187087 GTGAGATCACGACCCCTTCT 58.813 55.000 0.00 0.00 37.10 2.85
99 100 1.135333 GTGAGATCACGACCCCTTCTC 59.865 57.143 0.00 0.00 37.10 2.87
100 101 0.747852 GAGATCACGACCCCTTCTCC 59.252 60.000 0.00 0.00 0.00 3.71
101 102 0.688087 AGATCACGACCCCTTCTCCC 60.688 60.000 0.00 0.00 0.00 4.30
102 103 0.688087 GATCACGACCCCTTCTCCCT 60.688 60.000 0.00 0.00 0.00 4.20
103 104 0.688087 ATCACGACCCCTTCTCCCTC 60.688 60.000 0.00 0.00 0.00 4.30
104 105 2.039137 ACGACCCCTTCTCCCTCC 59.961 66.667 0.00 0.00 0.00 4.30
105 106 3.148279 CGACCCCTTCTCCCTCCG 61.148 72.222 0.00 0.00 0.00 4.63
106 107 2.039137 GACCCCTTCTCCCTCCGT 59.961 66.667 0.00 0.00 0.00 4.69
107 108 2.039137 ACCCCTTCTCCCTCCGTC 59.961 66.667 0.00 0.00 0.00 4.79
108 109 2.764547 CCCCTTCTCCCTCCGTCC 60.765 72.222 0.00 0.00 0.00 4.79
109 110 2.038975 CCCTTCTCCCTCCGTCCA 59.961 66.667 0.00 0.00 0.00 4.02
110 111 2.359967 CCCTTCTCCCTCCGTCCAC 61.360 68.421 0.00 0.00 0.00 4.02
111 112 2.359967 CCTTCTCCCTCCGTCCACC 61.360 68.421 0.00 0.00 0.00 4.61
112 113 2.678934 TTCTCCCTCCGTCCACCG 60.679 66.667 0.00 0.00 0.00 4.94
116 117 4.016706 CCCTCCGTCCACCGCTTT 62.017 66.667 0.00 0.00 34.38 3.51
117 118 2.742372 CCTCCGTCCACCGCTTTG 60.742 66.667 0.00 0.00 34.38 2.77
118 119 2.742372 CTCCGTCCACCGCTTTGG 60.742 66.667 0.00 0.00 46.41 3.28
128 129 2.045926 CGCTTTGGTGAGGGGAGG 60.046 66.667 0.00 0.00 0.00 4.30
129 130 2.592993 CGCTTTGGTGAGGGGAGGA 61.593 63.158 0.00 0.00 0.00 3.71
130 131 1.301293 GCTTTGGTGAGGGGAGGAG 59.699 63.158 0.00 0.00 0.00 3.69
131 132 1.301293 CTTTGGTGAGGGGAGGAGC 59.699 63.158 0.00 0.00 0.00 4.70
132 133 2.527951 CTTTGGTGAGGGGAGGAGCG 62.528 65.000 0.00 0.00 0.00 5.03
135 136 4.154347 GTGAGGGGAGGAGCGCAG 62.154 72.222 11.47 0.00 0.00 5.18
141 142 4.459089 GGAGGAGCGCAGGGACAC 62.459 72.222 11.47 0.00 0.00 3.67
142 143 3.386237 GAGGAGCGCAGGGACACT 61.386 66.667 11.47 0.00 0.00 3.55
154 155 4.813296 CAGGGACACTGTTGTTTTAGAC 57.187 45.455 0.00 0.00 42.42 2.59
155 156 3.564225 CAGGGACACTGTTGTTTTAGACC 59.436 47.826 0.00 0.00 42.42 3.85
156 157 2.546789 GGGACACTGTTGTTTTAGACCG 59.453 50.000 0.00 0.00 35.47 4.79
157 158 3.460103 GGACACTGTTGTTTTAGACCGA 58.540 45.455 0.00 0.00 35.47 4.69
158 159 4.062991 GGACACTGTTGTTTTAGACCGAT 58.937 43.478 0.00 0.00 35.47 4.18
159 160 4.084013 GGACACTGTTGTTTTAGACCGATG 60.084 45.833 0.00 0.00 35.47 3.84
160 161 4.699637 ACACTGTTGTTTTAGACCGATGA 58.300 39.130 0.00 0.00 28.43 2.92
161 162 5.305585 ACACTGTTGTTTTAGACCGATGAT 58.694 37.500 0.00 0.00 28.43 2.45
162 163 5.179368 ACACTGTTGTTTTAGACCGATGATG 59.821 40.000 0.00 0.00 28.43 3.07
163 164 4.695455 ACTGTTGTTTTAGACCGATGATGG 59.305 41.667 0.00 0.00 0.00 3.51
164 165 9.999040 ACACTGTTGTTTTAGACCGATGATGGT 62.999 40.741 0.00 0.00 37.60 3.55
173 174 3.504021 CGATGATGGTCGGATGAGG 57.496 57.895 0.00 0.00 37.94 3.86
174 175 0.961753 CGATGATGGTCGGATGAGGA 59.038 55.000 0.00 0.00 37.94 3.71
175 176 1.547820 CGATGATGGTCGGATGAGGAT 59.452 52.381 0.00 0.00 37.94 3.24
176 177 2.028658 CGATGATGGTCGGATGAGGATT 60.029 50.000 0.00 0.00 37.94 3.01
177 178 3.555795 CGATGATGGTCGGATGAGGATTT 60.556 47.826 0.00 0.00 37.94 2.17
178 179 3.931907 TGATGGTCGGATGAGGATTTT 57.068 42.857 0.00 0.00 0.00 1.82
179 180 5.551233 GATGATGGTCGGATGAGGATTTTA 58.449 41.667 0.00 0.00 0.00 1.52
180 181 4.960938 TGATGGTCGGATGAGGATTTTAG 58.039 43.478 0.00 0.00 0.00 1.85
181 182 3.838244 TGGTCGGATGAGGATTTTAGG 57.162 47.619 0.00 0.00 0.00 2.69
182 183 3.112263 TGGTCGGATGAGGATTTTAGGT 58.888 45.455 0.00 0.00 0.00 3.08
183 184 3.521937 TGGTCGGATGAGGATTTTAGGTT 59.478 43.478 0.00 0.00 0.00 3.50
184 185 4.717778 TGGTCGGATGAGGATTTTAGGTTA 59.282 41.667 0.00 0.00 0.00 2.85
185 186 5.163343 TGGTCGGATGAGGATTTTAGGTTAG 60.163 44.000 0.00 0.00 0.00 2.34
186 187 5.070047 GGTCGGATGAGGATTTTAGGTTAGA 59.930 44.000 0.00 0.00 0.00 2.10
187 188 6.239629 GGTCGGATGAGGATTTTAGGTTAGAT 60.240 42.308 0.00 0.00 0.00 1.98
188 189 7.217906 GTCGGATGAGGATTTTAGGTTAGATT 58.782 38.462 0.00 0.00 0.00 2.40
189 190 7.715686 GTCGGATGAGGATTTTAGGTTAGATTT 59.284 37.037 0.00 0.00 0.00 2.17
190 191 7.715249 TCGGATGAGGATTTTAGGTTAGATTTG 59.285 37.037 0.00 0.00 0.00 2.32
191 192 7.715249 CGGATGAGGATTTTAGGTTAGATTTGA 59.285 37.037 0.00 0.00 0.00 2.69
192 193 9.061435 GGATGAGGATTTTAGGTTAGATTTGAG 57.939 37.037 0.00 0.00 0.00 3.02
193 194 9.620259 GATGAGGATTTTAGGTTAGATTTGAGT 57.380 33.333 0.00 0.00 0.00 3.41
194 195 9.620259 ATGAGGATTTTAGGTTAGATTTGAGTC 57.380 33.333 0.00 0.00 0.00 3.36
195 196 8.826765 TGAGGATTTTAGGTTAGATTTGAGTCT 58.173 33.333 0.00 0.00 0.00 3.24
196 197 9.320352 GAGGATTTTAGGTTAGATTTGAGTCTC 57.680 37.037 0.00 0.00 0.00 3.36
197 198 9.052365 AGGATTTTAGGTTAGATTTGAGTCTCT 57.948 33.333 0.65 0.00 0.00 3.10
202 203 9.529823 TTTAGGTTAGATTTGAGTCTCTAGTCA 57.470 33.333 8.95 0.00 33.09 3.41
203 204 9.702253 TTAGGTTAGATTTGAGTCTCTAGTCAT 57.298 33.333 8.95 0.00 35.00 3.06
205 206 9.349713 AGGTTAGATTTGAGTCTCTAGTCATAG 57.650 37.037 8.95 0.00 35.00 2.23
206 207 9.127277 GGTTAGATTTGAGTCTCTAGTCATAGT 57.873 37.037 8.95 0.00 35.00 2.12
208 209 9.907229 TTAGATTTGAGTCTCTAGTCATAGTCA 57.093 33.333 8.95 0.00 35.00 3.41
209 210 8.995027 AGATTTGAGTCTCTAGTCATAGTCAT 57.005 34.615 8.95 0.00 35.00 3.06
212 213 8.684386 TTTGAGTCTCTAGTCATAGTCATAGG 57.316 38.462 0.65 0.00 35.00 2.57
213 214 7.381789 TGAGTCTCTAGTCATAGTCATAGGT 57.618 40.000 0.65 0.00 29.81 3.08
214 215 7.220740 TGAGTCTCTAGTCATAGTCATAGGTG 58.779 42.308 0.65 0.00 29.81 4.00
215 216 6.539173 AGTCTCTAGTCATAGTCATAGGTGG 58.461 44.000 0.00 0.00 0.00 4.61
216 217 6.102027 AGTCTCTAGTCATAGTCATAGGTGGT 59.898 42.308 0.00 0.00 0.00 4.16
217 218 6.205853 GTCTCTAGTCATAGTCATAGGTGGTG 59.794 46.154 0.00 0.00 0.00 4.17
218 219 6.101296 TCTCTAGTCATAGTCATAGGTGGTGA 59.899 42.308 0.00 0.00 0.00 4.02
219 220 6.299922 TCTAGTCATAGTCATAGGTGGTGAG 58.700 44.000 0.00 0.00 0.00 3.51
220 221 5.130705 AGTCATAGTCATAGGTGGTGAGA 57.869 43.478 0.00 0.00 0.00 3.27
221 222 4.890581 AGTCATAGTCATAGGTGGTGAGAC 59.109 45.833 0.00 0.00 0.00 3.36
222 223 3.883489 TCATAGTCATAGGTGGTGAGACG 59.117 47.826 0.00 0.00 34.56 4.18
223 224 2.509166 AGTCATAGGTGGTGAGACGA 57.491 50.000 0.00 0.00 34.56 4.20
224 225 2.093106 AGTCATAGGTGGTGAGACGAC 58.907 52.381 0.00 0.00 34.56 4.34
225 226 1.092348 TCATAGGTGGTGAGACGACG 58.908 55.000 0.00 0.00 0.00 5.12
226 227 0.100682 CATAGGTGGTGAGACGACGG 59.899 60.000 0.00 0.00 0.00 4.79
227 228 1.035932 ATAGGTGGTGAGACGACGGG 61.036 60.000 0.00 0.00 0.00 5.28
228 229 4.065281 GGTGGTGAGACGACGGGG 62.065 72.222 0.00 0.00 0.00 5.73
229 230 4.736896 GTGGTGAGACGACGGGGC 62.737 72.222 0.00 0.00 0.00 5.80
231 232 3.771160 GGTGAGACGACGGGGCAT 61.771 66.667 0.00 0.00 0.00 4.40
232 233 2.202756 GTGAGACGACGGGGCATC 60.203 66.667 0.00 0.00 0.00 3.91
233 234 2.678580 TGAGACGACGGGGCATCA 60.679 61.111 0.00 0.00 0.00 3.07
234 235 2.202756 GAGACGACGGGGCATCAC 60.203 66.667 0.00 0.00 0.00 3.06
235 236 3.718210 GAGACGACGGGGCATCACC 62.718 68.421 0.00 0.00 37.93 4.02
241 242 2.895372 CGGGGCATCACCGTTAGC 60.895 66.667 0.00 0.00 46.03 3.09
242 243 2.270850 GGGGCATCACCGTTAGCA 59.729 61.111 0.00 0.00 40.62 3.49
243 244 1.152963 GGGGCATCACCGTTAGCAT 60.153 57.895 0.00 0.00 40.62 3.79
244 245 1.447317 GGGGCATCACCGTTAGCATG 61.447 60.000 0.00 0.00 40.62 4.06
245 246 1.447317 GGGCATCACCGTTAGCATGG 61.447 60.000 0.00 0.00 40.62 3.66
246 247 0.463654 GGCATCACCGTTAGCATGGA 60.464 55.000 0.00 0.00 32.58 3.41
247 248 1.378531 GCATCACCGTTAGCATGGAA 58.621 50.000 0.00 0.00 32.58 3.53
248 249 1.949525 GCATCACCGTTAGCATGGAAT 59.050 47.619 0.00 0.00 32.58 3.01
249 250 3.138304 GCATCACCGTTAGCATGGAATA 58.862 45.455 0.00 0.00 32.58 1.75
250 251 3.563808 GCATCACCGTTAGCATGGAATAA 59.436 43.478 0.00 0.00 32.58 1.40
251 252 4.319766 GCATCACCGTTAGCATGGAATAAG 60.320 45.833 0.00 0.00 32.58 1.73
252 253 4.481368 TCACCGTTAGCATGGAATAAGT 57.519 40.909 0.00 0.00 32.58 2.24
253 254 4.439057 TCACCGTTAGCATGGAATAAGTC 58.561 43.478 0.00 0.00 32.58 3.01
267 268 5.995446 GGAATAAGTCCTCTTCATTCTGGT 58.005 41.667 0.00 0.00 43.98 4.00
268 269 5.819901 GGAATAAGTCCTCTTCATTCTGGTG 59.180 44.000 0.00 0.00 43.98 4.17
269 270 3.710209 AAGTCCTCTTCATTCTGGTGG 57.290 47.619 0.00 0.00 0.00 4.61
270 271 1.280421 AGTCCTCTTCATTCTGGTGGC 59.720 52.381 0.00 0.00 0.00 5.01
271 272 0.250234 TCCTCTTCATTCTGGTGGCG 59.750 55.000 0.00 0.00 0.00 5.69
272 273 1.372087 CCTCTTCATTCTGGTGGCGC 61.372 60.000 0.00 0.00 0.00 6.53
273 274 0.392193 CTCTTCATTCTGGTGGCGCT 60.392 55.000 7.64 0.00 0.00 5.92
274 275 0.901827 TCTTCATTCTGGTGGCGCTA 59.098 50.000 7.64 0.00 0.00 4.26
275 276 1.009829 CTTCATTCTGGTGGCGCTAC 58.990 55.000 16.51 16.51 0.00 3.58
276 277 0.392461 TTCATTCTGGTGGCGCTACC 60.392 55.000 33.76 33.76 41.24 3.18
277 278 1.819632 CATTCTGGTGGCGCTACCC 60.820 63.158 36.19 20.60 40.09 3.69
278 279 3.043999 ATTCTGGTGGCGCTACCCC 62.044 63.158 36.19 16.68 40.09 4.95
279 280 4.715130 TCTGGTGGCGCTACCCCT 62.715 66.667 36.19 0.00 40.09 4.79
280 281 3.717294 CTGGTGGCGCTACCCCTT 61.717 66.667 36.19 0.00 40.09 3.95
281 282 2.284773 TGGTGGCGCTACCCCTTA 60.285 61.111 36.19 18.04 40.09 2.69
282 283 1.691337 TGGTGGCGCTACCCCTTAT 60.691 57.895 36.19 0.00 40.09 1.73
283 284 1.227853 GGTGGCGCTACCCCTTATG 60.228 63.158 30.99 0.00 37.83 1.90
284 285 1.892391 GTGGCGCTACCCCTTATGC 60.892 63.158 13.67 0.00 37.83 3.14
285 286 2.070039 TGGCGCTACCCCTTATGCT 61.070 57.895 7.64 0.00 37.83 3.79
286 287 1.148498 GGCGCTACCCCTTATGCTT 59.852 57.895 7.64 0.00 0.00 3.91
287 288 0.885150 GGCGCTACCCCTTATGCTTC 60.885 60.000 7.64 0.00 0.00 3.86
288 289 1.222115 GCGCTACCCCTTATGCTTCG 61.222 60.000 0.00 0.00 0.00 3.79
289 290 0.104304 CGCTACCCCTTATGCTTCGT 59.896 55.000 0.00 0.00 0.00 3.85
290 291 1.338973 CGCTACCCCTTATGCTTCGTA 59.661 52.381 0.00 0.00 0.00 3.43
291 292 2.752121 GCTACCCCTTATGCTTCGTAC 58.248 52.381 0.00 0.00 0.00 3.67
292 293 2.364647 GCTACCCCTTATGCTTCGTACT 59.635 50.000 0.00 0.00 0.00 2.73
293 294 3.571401 GCTACCCCTTATGCTTCGTACTA 59.429 47.826 0.00 0.00 0.00 1.82
294 295 4.220163 GCTACCCCTTATGCTTCGTACTAT 59.780 45.833 0.00 0.00 0.00 2.12
295 296 5.279356 GCTACCCCTTATGCTTCGTACTATT 60.279 44.000 0.00 0.00 0.00 1.73
296 297 5.625568 ACCCCTTATGCTTCGTACTATTT 57.374 39.130 0.00 0.00 0.00 1.40
297 298 6.736110 ACCCCTTATGCTTCGTACTATTTA 57.264 37.500 0.00 0.00 0.00 1.40
298 299 6.519382 ACCCCTTATGCTTCGTACTATTTAC 58.481 40.000 0.00 0.00 0.00 2.01
299 300 6.098695 ACCCCTTATGCTTCGTACTATTTACA 59.901 38.462 0.00 0.00 0.00 2.41
300 301 7.159372 CCCCTTATGCTTCGTACTATTTACAT 58.841 38.462 0.00 0.00 0.00 2.29
301 302 7.117812 CCCCTTATGCTTCGTACTATTTACATG 59.882 40.741 0.00 0.00 0.00 3.21
302 303 7.870954 CCCTTATGCTTCGTACTATTTACATGA 59.129 37.037 0.00 0.00 0.00 3.07
303 304 8.916654 CCTTATGCTTCGTACTATTTACATGAG 58.083 37.037 0.00 0.00 0.00 2.90
304 305 9.678941 CTTATGCTTCGTACTATTTACATGAGA 57.321 33.333 0.00 0.00 0.00 3.27
306 307 8.942338 ATGCTTCGTACTATTTACATGAGAAA 57.058 30.769 0.00 0.00 0.00 2.52
307 308 8.942338 TGCTTCGTACTATTTACATGAGAAAT 57.058 30.769 0.00 7.59 0.00 2.17
322 323 5.581126 TGAGAAATACCATCATGTTTGCC 57.419 39.130 0.00 0.00 0.00 4.52
323 324 5.263599 TGAGAAATACCATCATGTTTGCCT 58.736 37.500 0.00 0.00 0.00 4.75
324 325 5.357878 TGAGAAATACCATCATGTTTGCCTC 59.642 40.000 0.00 0.00 0.00 4.70
325 326 4.646492 AGAAATACCATCATGTTTGCCTCC 59.354 41.667 0.00 0.00 0.00 4.30
326 327 3.668141 ATACCATCATGTTTGCCTCCA 57.332 42.857 0.00 0.00 0.00 3.86
327 328 2.307496 ACCATCATGTTTGCCTCCAA 57.693 45.000 0.00 0.00 0.00 3.53
328 329 2.823959 ACCATCATGTTTGCCTCCAAT 58.176 42.857 0.00 0.00 0.00 3.16
329 330 3.175594 ACCATCATGTTTGCCTCCAATT 58.824 40.909 0.00 0.00 0.00 2.32
330 331 3.196254 ACCATCATGTTTGCCTCCAATTC 59.804 43.478 0.00 0.00 0.00 2.17
331 332 3.431207 CCATCATGTTTGCCTCCAATTCC 60.431 47.826 0.00 0.00 0.00 3.01
332 333 2.178580 TCATGTTTGCCTCCAATTCCC 58.821 47.619 0.00 0.00 0.00 3.97
333 334 1.207811 CATGTTTGCCTCCAATTCCCC 59.792 52.381 0.00 0.00 0.00 4.81
334 335 0.544120 TGTTTGCCTCCAATTCCCCC 60.544 55.000 0.00 0.00 0.00 5.40
335 336 0.252239 GTTTGCCTCCAATTCCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
336 337 0.041090 TTTGCCTCCAATTCCCCCTC 59.959 55.000 0.00 0.00 0.00 4.30
337 338 2.193248 GCCTCCAATTCCCCCTCG 59.807 66.667 0.00 0.00 0.00 4.63
338 339 2.680370 GCCTCCAATTCCCCCTCGT 61.680 63.158 0.00 0.00 0.00 4.18
339 340 1.527370 CCTCCAATTCCCCCTCGTC 59.473 63.158 0.00 0.00 0.00 4.20
340 341 1.144057 CTCCAATTCCCCCTCGTCG 59.856 63.158 0.00 0.00 0.00 5.12
341 342 2.513897 CCAATTCCCCCTCGTCGC 60.514 66.667 0.00 0.00 0.00 5.19
342 343 2.513897 CAATTCCCCCTCGTCGCC 60.514 66.667 0.00 0.00 0.00 5.54
343 344 4.157120 AATTCCCCCTCGTCGCCG 62.157 66.667 0.00 0.00 0.00 6.46
354 355 4.760047 GTCGCCGCCACATCCACT 62.760 66.667 0.00 0.00 0.00 4.00
355 356 4.015406 TCGCCGCCACATCCACTT 62.015 61.111 0.00 0.00 0.00 3.16
356 357 3.803082 CGCCGCCACATCCACTTG 61.803 66.667 0.00 0.00 0.00 3.16
357 358 2.672996 GCCGCCACATCCACTTGT 60.673 61.111 0.00 0.00 0.00 3.16
358 359 2.268076 GCCGCCACATCCACTTGTT 61.268 57.895 0.00 0.00 0.00 2.83
359 360 1.805428 GCCGCCACATCCACTTGTTT 61.805 55.000 0.00 0.00 0.00 2.83
360 361 0.039256 CCGCCACATCCACTTGTTTG 60.039 55.000 0.00 0.00 0.00 2.93
361 362 0.039256 CGCCACATCCACTTGTTTGG 60.039 55.000 0.00 0.00 38.10 3.28
369 370 3.524095 TCCACTTGTTTGGATGTCCAT 57.476 42.857 1.98 0.00 46.97 3.41
370 371 3.420893 TCCACTTGTTTGGATGTCCATC 58.579 45.455 1.98 0.00 46.97 3.51
371 372 3.156293 CCACTTGTTTGGATGTCCATCA 58.844 45.455 9.34 3.32 46.97 3.07
372 373 3.057315 CCACTTGTTTGGATGTCCATCAC 60.057 47.826 9.34 4.05 46.97 3.06
373 374 3.057315 CACTTGTTTGGATGTCCATCACC 60.057 47.826 9.34 0.00 46.97 4.02
374 375 2.967745 TGTTTGGATGTCCATCACCA 57.032 45.000 9.34 0.00 46.97 4.17
375 376 2.513753 TGTTTGGATGTCCATCACCAC 58.486 47.619 9.34 3.16 46.97 4.16
376 377 1.818674 GTTTGGATGTCCATCACCACC 59.181 52.381 9.34 0.00 46.97 4.61
377 378 0.035534 TTGGATGTCCATCACCACCG 60.036 55.000 9.34 0.00 46.97 4.94
378 379 0.907230 TGGATGTCCATCACCACCGA 60.907 55.000 9.34 0.00 42.01 4.69
379 380 0.462047 GGATGTCCATCACCACCGAC 60.462 60.000 9.34 0.00 39.54 4.79
380 381 0.806102 GATGTCCATCACCACCGACG 60.806 60.000 2.43 0.00 37.74 5.12
381 382 2.813908 GTCCATCACCACCGACGC 60.814 66.667 0.00 0.00 0.00 5.19
382 383 4.077184 TCCATCACCACCGACGCC 62.077 66.667 0.00 0.00 0.00 5.68
383 384 4.082523 CCATCACCACCGACGCCT 62.083 66.667 0.00 0.00 0.00 5.52
384 385 2.717044 CCATCACCACCGACGCCTA 61.717 63.158 0.00 0.00 0.00 3.93
385 386 1.518572 CATCACCACCGACGCCTAC 60.519 63.158 0.00 0.00 0.00 3.18
386 387 2.718073 ATCACCACCGACGCCTACC 61.718 63.158 0.00 0.00 0.00 3.18
387 388 3.379445 CACCACCGACGCCTACCT 61.379 66.667 0.00 0.00 0.00 3.08
388 389 3.066814 ACCACCGACGCCTACCTC 61.067 66.667 0.00 0.00 0.00 3.85
389 390 3.834799 CCACCGACGCCTACCTCC 61.835 72.222 0.00 0.00 0.00 4.30
390 391 3.066190 CACCGACGCCTACCTCCA 61.066 66.667 0.00 0.00 0.00 3.86
391 392 2.043248 ACCGACGCCTACCTCCAT 60.043 61.111 0.00 0.00 0.00 3.41
392 393 1.684734 ACCGACGCCTACCTCCATT 60.685 57.895 0.00 0.00 0.00 3.16
393 394 1.227263 CCGACGCCTACCTCCATTG 60.227 63.158 0.00 0.00 0.00 2.82
394 395 1.515954 CGACGCCTACCTCCATTGT 59.484 57.895 0.00 0.00 0.00 2.71
395 396 0.527817 CGACGCCTACCTCCATTGTC 60.528 60.000 0.00 0.00 0.00 3.18
396 397 0.527817 GACGCCTACCTCCATTGTCG 60.528 60.000 0.00 0.00 0.00 4.35
397 398 1.883084 CGCCTACCTCCATTGTCGC 60.883 63.158 0.00 0.00 0.00 5.19
398 399 1.523938 GCCTACCTCCATTGTCGCC 60.524 63.158 0.00 0.00 0.00 5.54
399 400 1.904771 CCTACCTCCATTGTCGCCA 59.095 57.895 0.00 0.00 0.00 5.69
400 401 0.251916 CCTACCTCCATTGTCGCCAA 59.748 55.000 0.00 0.00 34.45 4.52
401 402 1.134098 CCTACCTCCATTGTCGCCAAT 60.134 52.381 0.00 0.00 42.03 3.16
414 415 3.443045 CCAATGCGCACCTCCCAC 61.443 66.667 14.90 0.00 0.00 4.61
421 422 2.671682 GCACCTCCCACCTTCTCC 59.328 66.667 0.00 0.00 0.00 3.71
423 424 1.566298 GCACCTCCCACCTTCTCCAT 61.566 60.000 0.00 0.00 0.00 3.41
428 429 3.311702 ACCTCCCACCTTCTCCATAGAAT 60.312 47.826 0.00 0.00 40.92 2.40
459 461 5.069914 TGAGGGTAACATAATACTCGTGCAT 59.930 40.000 0.00 0.00 39.74 3.96
501 503 2.543687 ATCGTCTGCGGTGAAGTCGG 62.544 60.000 0.00 0.00 38.89 4.79
510 512 0.524862 GGTGAAGTCGGAGTCGCTTA 59.475 55.000 3.12 0.00 34.64 3.09
515 517 0.390866 AGTCGGAGTCGCTTAGTCGA 60.391 55.000 0.00 0.00 36.13 4.20
519 521 1.310904 GGAGTCGCTTAGTCGAGGAT 58.689 55.000 0.00 0.00 39.34 3.24
522 524 3.314635 GGAGTCGCTTAGTCGAGGATAAA 59.685 47.826 0.00 0.00 39.34 1.40
523 525 4.281264 GAGTCGCTTAGTCGAGGATAAAC 58.719 47.826 0.00 0.00 39.34 2.01
524 526 3.946558 AGTCGCTTAGTCGAGGATAAACT 59.053 43.478 0.00 0.00 39.34 2.66
525 527 5.121811 AGTCGCTTAGTCGAGGATAAACTA 58.878 41.667 0.00 0.00 39.34 2.24
526 528 5.764192 AGTCGCTTAGTCGAGGATAAACTAT 59.236 40.000 0.00 0.00 39.34 2.12
527 529 5.852229 GTCGCTTAGTCGAGGATAAACTATG 59.148 44.000 0.00 0.00 39.34 2.23
528 530 5.761726 TCGCTTAGTCGAGGATAAACTATGA 59.238 40.000 0.00 0.00 34.09 2.15
535 537 6.262496 AGTCGAGGATAAACTATGACGATGAA 59.738 38.462 0.00 0.00 33.55 2.57
541 543 8.041323 AGGATAAACTATGACGATGAAACTGTT 58.959 33.333 0.00 0.00 0.00 3.16
557 559 0.817634 TGTTCTGGCAACCTCAACGG 60.818 55.000 0.00 0.00 39.35 4.44
574 576 3.839432 GAGTTCCTCTCCGGCGGG 61.839 72.222 27.98 17.02 37.22 6.13
607 626 1.350019 GTGTAGGCCTTTGTGGGTAGT 59.650 52.381 12.58 0.00 36.00 2.73
609 628 1.907255 GTAGGCCTTTGTGGGTAGTCT 59.093 52.381 12.58 0.00 36.00 3.24
616 635 1.975660 TTGTGGGTAGTCTGTTTGGC 58.024 50.000 0.00 0.00 0.00 4.52
629 648 1.150536 TTTGGCTGGGTGTCCTGTC 59.849 57.895 0.00 0.00 37.16 3.51
649 668 4.279659 GTCTTGTGGACATGTTTTTCGTC 58.720 43.478 0.00 0.00 43.94 4.20
669 688 7.789273 TCGTCTGGTTTTCAGTTAATTAACA 57.211 32.000 26.06 7.57 43.76 2.41
671 690 7.496591 TCGTCTGGTTTTCAGTTAATTAACAGT 59.503 33.333 26.06 7.57 43.76 3.55
672 691 7.586300 CGTCTGGTTTTCAGTTAATTAACAGTG 59.414 37.037 26.06 17.77 43.76 3.66
673 692 8.617809 GTCTGGTTTTCAGTTAATTAACAGTGA 58.382 33.333 26.06 19.45 43.76 3.41
741 760 1.909700 TGGAACAGCCTGATTTGGAC 58.090 50.000 0.00 0.00 37.63 4.02
742 761 1.177401 GGAACAGCCTGATTTGGACC 58.823 55.000 0.00 0.00 0.00 4.46
781 800 3.488090 GAGGCCTGCACGTAACGC 61.488 66.667 12.00 0.00 0.00 4.84
853 877 1.681486 CGGCTCTCCTTTCCTCTCCC 61.681 65.000 0.00 0.00 0.00 4.30
894 925 3.741476 GACGACACGTACGGGCCT 61.741 66.667 19.40 0.00 41.37 5.19
895 926 3.673867 GACGACACGTACGGGCCTC 62.674 68.421 19.40 7.83 41.37 4.70
896 927 4.487412 CGACACGTACGGGCCTCC 62.487 72.222 19.40 3.53 0.00 4.30
897 928 3.066814 GACACGTACGGGCCTCCT 61.067 66.667 19.40 0.00 0.00 3.69
898 929 1.750399 GACACGTACGGGCCTCCTA 60.750 63.158 19.40 0.00 0.00 2.94
902 933 2.779033 CGTACGGGCCTCCTACCAC 61.779 68.421 7.57 0.00 0.00 4.16
903 934 2.440796 TACGGGCCTCCTACCACG 60.441 66.667 0.84 0.00 0.00 4.94
914 951 1.079127 CTACCACGAGCCAGGGTTG 60.079 63.158 4.11 4.11 36.14 3.77
928 965 1.603739 GGTTGGCCAAGGTCTGTCC 60.604 63.158 21.21 11.12 34.09 4.02
933 970 2.266055 CCAAGGTCTGTCCGAGCC 59.734 66.667 0.00 0.00 41.03 4.70
935 972 1.371183 CAAGGTCTGTCCGAGCCAA 59.629 57.895 0.00 0.00 41.03 4.52
950 988 2.192861 CCAAGGTTTCCGCACTGCA 61.193 57.895 1.11 0.00 0.00 4.41
951 989 1.526575 CCAAGGTTTCCGCACTGCAT 61.527 55.000 1.11 0.00 0.00 3.96
954 992 0.674895 AGGTTTCCGCACTGCATCTC 60.675 55.000 1.11 0.00 0.00 2.75
958 996 2.125229 CCGCACTGCATCTCAGCT 60.125 61.111 1.11 0.00 46.76 4.24
977 1015 0.976641 TGCTGACGAAGAACTCCCAT 59.023 50.000 0.00 0.00 0.00 4.00
1089 1127 1.893137 TGGTAACGTGCAGTCTGATCT 59.107 47.619 3.32 0.00 42.51 2.75
1175 1213 0.390735 GGTACGGCTTCATGTTCGGT 60.391 55.000 0.00 0.00 0.00 4.69
1301 1339 3.926616 ACCATAGTGCGGTAATGCTATC 58.073 45.455 0.00 0.00 34.02 2.08
1346 1387 3.925379 TGCTTAGAATGCTCGACTGAAA 58.075 40.909 0.00 0.00 0.00 2.69
1353 1394 2.755836 TGCTCGACTGAAAAACAAGC 57.244 45.000 0.00 0.00 31.57 4.01
1356 1397 2.603173 GCTCGACTGAAAAACAAGCTGG 60.603 50.000 0.00 0.00 0.00 4.85
1457 1501 6.378280 GCTATTTTGAAAGAAAGGGGAGATGA 59.622 38.462 0.00 0.00 0.00 2.92
1501 1566 3.081804 GGTCATCCCATCGTTTGTCTTT 58.918 45.455 0.00 0.00 0.00 2.52
1502 1567 3.119849 GGTCATCCCATCGTTTGTCTTTG 60.120 47.826 0.00 0.00 0.00 2.77
1503 1568 3.751175 GTCATCCCATCGTTTGTCTTTGA 59.249 43.478 0.00 0.00 0.00 2.69
1504 1569 4.396166 GTCATCCCATCGTTTGTCTTTGAT 59.604 41.667 0.00 0.00 0.00 2.57
1512 1577 4.141287 TCGTTTGTCTTTGATCCATGGTT 58.859 39.130 12.58 2.52 0.00 3.67
1657 1723 2.880963 GACTGTGGAGTCCATAGAGC 57.119 55.000 35.02 23.79 43.99 4.09
2081 2147 5.147767 AGGAGGGTTAAAAGCTTGAACAAT 58.852 37.500 20.34 11.43 0.00 2.71
2262 2339 6.423302 ACTGATCGAGCATTCTTATGATGTTC 59.577 38.462 2.72 0.00 33.37 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.045242 GGGAGGGAGGCGGAAAAC 60.045 66.667 0.00 0.00 0.00 2.43
11 12 2.204090 AGGGAGGGAGGCGGAAAA 60.204 61.111 0.00 0.00 0.00 2.29
12 13 2.687566 GAGGGAGGGAGGCGGAAA 60.688 66.667 0.00 0.00 0.00 3.13
13 14 4.798682 GGAGGGAGGGAGGCGGAA 62.799 72.222 0.00 0.00 0.00 4.30
16 17 4.888325 ATGGGAGGGAGGGAGGCG 62.888 72.222 0.00 0.00 0.00 5.52
17 18 3.174265 CATGGGAGGGAGGGAGGC 61.174 72.222 0.00 0.00 0.00 4.70
18 19 0.624500 TTTCATGGGAGGGAGGGAGG 60.625 60.000 0.00 0.00 0.00 4.30
19 20 0.548510 GTTTCATGGGAGGGAGGGAG 59.451 60.000 0.00 0.00 0.00 4.30
20 21 0.919289 GGTTTCATGGGAGGGAGGGA 60.919 60.000 0.00 0.00 0.00 4.20
21 22 1.615262 GGTTTCATGGGAGGGAGGG 59.385 63.158 0.00 0.00 0.00 4.30
22 23 1.214305 TGGGTTTCATGGGAGGGAGG 61.214 60.000 0.00 0.00 0.00 4.30
23 24 0.929244 ATGGGTTTCATGGGAGGGAG 59.071 55.000 0.00 0.00 34.22 4.30
24 25 2.295269 TATGGGTTTCATGGGAGGGA 57.705 50.000 0.00 0.00 37.30 4.20
25 26 2.949447 CTTATGGGTTTCATGGGAGGG 58.051 52.381 0.00 0.00 37.30 4.30
26 27 2.091665 AGCTTATGGGTTTCATGGGAGG 60.092 50.000 0.00 0.00 37.30 4.30
27 28 3.303351 AGCTTATGGGTTTCATGGGAG 57.697 47.619 0.00 0.00 37.30 4.30
28 29 3.138283 CCTAGCTTATGGGTTTCATGGGA 59.862 47.826 0.00 0.00 37.30 4.37
29 30 3.490348 CCTAGCTTATGGGTTTCATGGG 58.510 50.000 0.00 0.00 37.30 4.00
30 31 3.490348 CCCTAGCTTATGGGTTTCATGG 58.510 50.000 10.06 0.00 38.65 3.66
31 32 2.887152 GCCCTAGCTTATGGGTTTCATG 59.113 50.000 17.00 0.00 45.06 3.07
32 33 2.487265 CGCCCTAGCTTATGGGTTTCAT 60.487 50.000 17.00 0.00 45.06 2.57
33 34 1.134220 CGCCCTAGCTTATGGGTTTCA 60.134 52.381 17.00 0.00 45.06 2.69
34 35 1.140252 TCGCCCTAGCTTATGGGTTTC 59.860 52.381 17.00 4.03 45.06 2.78
35 36 1.134189 GTCGCCCTAGCTTATGGGTTT 60.134 52.381 17.00 0.00 45.06 3.27
36 37 0.468648 GTCGCCCTAGCTTATGGGTT 59.531 55.000 17.00 0.00 45.06 4.11
37 38 0.689745 TGTCGCCCTAGCTTATGGGT 60.690 55.000 17.00 0.00 45.06 4.51
38 39 0.034059 CTGTCGCCCTAGCTTATGGG 59.966 60.000 13.02 13.02 46.00 4.00
39 40 0.753262 ACTGTCGCCCTAGCTTATGG 59.247 55.000 0.00 0.00 36.60 2.74
40 41 1.137086 ACACTGTCGCCCTAGCTTATG 59.863 52.381 0.00 0.00 36.60 1.90
41 42 1.409427 GACACTGTCGCCCTAGCTTAT 59.591 52.381 0.00 0.00 36.60 1.73
42 43 0.815734 GACACTGTCGCCCTAGCTTA 59.184 55.000 0.00 0.00 36.60 3.09
43 44 1.185618 TGACACTGTCGCCCTAGCTT 61.186 55.000 4.71 0.00 34.95 3.74
44 45 1.185618 TTGACACTGTCGCCCTAGCT 61.186 55.000 4.71 0.00 34.95 3.32
45 46 1.014564 GTTGACACTGTCGCCCTAGC 61.015 60.000 4.71 0.00 34.95 3.42
46 47 0.389948 GGTTGACACTGTCGCCCTAG 60.390 60.000 4.71 0.00 34.95 3.02
47 48 0.830444 AGGTTGACACTGTCGCCCTA 60.830 55.000 14.75 0.00 34.84 3.53
48 49 0.830444 TAGGTTGACACTGTCGCCCT 60.830 55.000 18.50 18.50 38.32 5.19
49 50 0.669625 GTAGGTTGACACTGTCGCCC 60.670 60.000 15.20 11.91 34.95 6.13
50 51 0.669625 GGTAGGTTGACACTGTCGCC 60.670 60.000 12.33 12.33 34.95 5.54
51 52 0.317479 AGGTAGGTTGACACTGTCGC 59.683 55.000 4.71 0.52 34.95 5.19
52 53 1.067776 GGAGGTAGGTTGACACTGTCG 60.068 57.143 4.71 0.00 34.95 4.35
53 54 2.231721 GAGGAGGTAGGTTGACACTGTC 59.768 54.545 1.86 1.86 0.00 3.51
54 55 2.158295 AGAGGAGGTAGGTTGACACTGT 60.158 50.000 0.00 0.00 0.00 3.55
55 56 2.494073 GAGAGGAGGTAGGTTGACACTG 59.506 54.545 0.00 0.00 0.00 3.66
56 57 2.557901 GGAGAGGAGGTAGGTTGACACT 60.558 54.545 0.00 0.00 0.00 3.55
57 58 1.826096 GGAGAGGAGGTAGGTTGACAC 59.174 57.143 0.00 0.00 0.00 3.67
58 59 1.616187 CGGAGAGGAGGTAGGTTGACA 60.616 57.143 0.00 0.00 0.00 3.58
59 60 1.104630 CGGAGAGGAGGTAGGTTGAC 58.895 60.000 0.00 0.00 0.00 3.18
60 61 0.033405 CCGGAGAGGAGGTAGGTTGA 60.033 60.000 0.00 0.00 45.00 3.18
61 62 0.324460 ACCGGAGAGGAGGTAGGTTG 60.324 60.000 9.46 0.00 45.00 3.77
62 63 0.324460 CACCGGAGAGGAGGTAGGTT 60.324 60.000 9.46 0.00 45.00 3.50
63 64 1.212934 TCACCGGAGAGGAGGTAGGT 61.213 60.000 9.46 0.00 45.00 3.08
64 65 0.466555 CTCACCGGAGAGGAGGTAGG 60.467 65.000 20.11 0.00 44.26 3.18
65 66 0.547075 TCTCACCGGAGAGGAGGTAG 59.453 60.000 25.99 2.56 45.12 3.18
66 67 2.706034 TCTCACCGGAGAGGAGGTA 58.294 57.895 25.99 6.12 45.12 3.08
67 68 3.509290 TCTCACCGGAGAGGAGGT 58.491 61.111 25.99 0.00 45.12 3.85
74 75 1.433879 GGTCGTGATCTCACCGGAG 59.566 63.158 9.46 0.00 43.66 4.63
75 76 2.050350 GGGTCGTGATCTCACCGGA 61.050 63.158 9.46 0.00 43.66 5.14
76 77 2.494918 GGGTCGTGATCTCACCGG 59.505 66.667 0.00 0.00 43.66 5.28
77 78 1.605058 AAGGGGTCGTGATCTCACCG 61.605 60.000 4.81 1.21 43.66 4.94
78 79 0.175989 GAAGGGGTCGTGATCTCACC 59.824 60.000 4.81 1.43 43.66 4.02
79 80 1.135333 GAGAAGGGGTCGTGATCTCAC 59.865 57.143 0.07 0.07 43.15 3.51
80 81 1.475403 GAGAAGGGGTCGTGATCTCA 58.525 55.000 0.00 0.00 37.17 3.27
81 82 0.747852 GGAGAAGGGGTCGTGATCTC 59.252 60.000 0.00 0.00 36.62 2.75
82 83 0.688087 GGGAGAAGGGGTCGTGATCT 60.688 60.000 0.00 0.00 0.00 2.75
83 84 0.688087 AGGGAGAAGGGGTCGTGATC 60.688 60.000 0.00 0.00 0.00 2.92
84 85 0.688087 GAGGGAGAAGGGGTCGTGAT 60.688 60.000 0.00 0.00 0.00 3.06
85 86 1.305046 GAGGGAGAAGGGGTCGTGA 60.305 63.158 0.00 0.00 0.00 4.35
86 87 2.359967 GGAGGGAGAAGGGGTCGTG 61.360 68.421 0.00 0.00 0.00 4.35
87 88 2.039137 GGAGGGAGAAGGGGTCGT 59.961 66.667 0.00 0.00 0.00 4.34
88 89 3.148279 CGGAGGGAGAAGGGGTCG 61.148 72.222 0.00 0.00 0.00 4.79
89 90 2.039137 ACGGAGGGAGAAGGGGTC 59.961 66.667 0.00 0.00 0.00 4.46
90 91 2.039137 GACGGAGGGAGAAGGGGT 59.961 66.667 0.00 0.00 0.00 4.95
91 92 2.764547 GGACGGAGGGAGAAGGGG 60.765 72.222 0.00 0.00 0.00 4.79
92 93 2.038975 TGGACGGAGGGAGAAGGG 59.961 66.667 0.00 0.00 0.00 3.95
93 94 2.359967 GGTGGACGGAGGGAGAAGG 61.360 68.421 0.00 0.00 0.00 3.46
94 95 2.711922 CGGTGGACGGAGGGAGAAG 61.712 68.421 0.00 0.00 39.42 2.85
95 96 2.678934 CGGTGGACGGAGGGAGAA 60.679 66.667 0.00 0.00 39.42 2.87
99 100 4.016706 AAAGCGGTGGACGGAGGG 62.017 66.667 0.00 0.00 44.51 4.30
100 101 2.742372 CAAAGCGGTGGACGGAGG 60.742 66.667 0.00 0.00 44.51 4.30
101 102 2.742372 CCAAAGCGGTGGACGGAG 60.742 66.667 2.72 0.00 41.65 4.63
110 111 2.045926 CTCCCCTCACCAAAGCGG 60.046 66.667 0.00 0.00 42.50 5.52
111 112 2.045926 CCTCCCCTCACCAAAGCG 60.046 66.667 0.00 0.00 0.00 4.68
112 113 1.301293 CTCCTCCCCTCACCAAAGC 59.699 63.158 0.00 0.00 0.00 3.51
113 114 1.301293 GCTCCTCCCCTCACCAAAG 59.699 63.158 0.00 0.00 0.00 2.77
114 115 2.592993 CGCTCCTCCCCTCACCAAA 61.593 63.158 0.00 0.00 0.00 3.28
115 116 3.003173 CGCTCCTCCCCTCACCAA 61.003 66.667 0.00 0.00 0.00 3.67
118 119 4.154347 CTGCGCTCCTCCCCTCAC 62.154 72.222 9.73 0.00 0.00 3.51
124 125 4.459089 GTGTCCCTGCGCTCCTCC 62.459 72.222 9.73 0.00 0.00 4.30
125 126 3.386237 AGTGTCCCTGCGCTCCTC 61.386 66.667 9.73 0.00 0.00 3.71
126 127 3.699894 CAGTGTCCCTGCGCTCCT 61.700 66.667 9.73 0.00 33.59 3.69
127 128 3.537206 AACAGTGTCCCTGCGCTCC 62.537 63.158 9.73 0.00 45.68 4.70
128 129 2.031163 AACAGTGTCCCTGCGCTC 59.969 61.111 9.73 0.00 45.68 5.03
129 130 2.281070 CAACAGTGTCCCTGCGCT 60.281 61.111 9.73 0.00 45.68 5.92
130 131 1.724582 AAACAACAGTGTCCCTGCGC 61.725 55.000 0.00 0.00 45.68 6.09
131 132 0.738389 AAAACAACAGTGTCCCTGCG 59.262 50.000 0.00 0.00 45.68 5.18
132 133 3.003378 GTCTAAAACAACAGTGTCCCTGC 59.997 47.826 0.00 0.00 45.68 4.85
134 135 3.743269 CGGTCTAAAACAACAGTGTCCCT 60.743 47.826 0.00 0.00 36.80 4.20
135 136 2.546789 CGGTCTAAAACAACAGTGTCCC 59.453 50.000 0.00 0.00 36.80 4.46
136 137 3.460103 TCGGTCTAAAACAACAGTGTCC 58.540 45.455 0.00 0.00 36.80 4.02
137 138 4.748102 TCATCGGTCTAAAACAACAGTGTC 59.252 41.667 0.00 0.00 36.80 3.67
138 139 4.699637 TCATCGGTCTAAAACAACAGTGT 58.300 39.130 0.00 0.00 40.75 3.55
139 140 5.390885 CCATCATCGGTCTAAAACAACAGTG 60.391 44.000 0.00 0.00 0.00 3.66
140 141 4.695455 CCATCATCGGTCTAAAACAACAGT 59.305 41.667 0.00 0.00 0.00 3.55
141 142 4.695455 ACCATCATCGGTCTAAAACAACAG 59.305 41.667 0.00 0.00 32.11 3.16
142 143 4.647611 ACCATCATCGGTCTAAAACAACA 58.352 39.130 0.00 0.00 32.11 3.33
155 156 0.961753 TCCTCATCCGACCATCATCG 59.038 55.000 0.00 0.00 41.89 3.84
156 157 3.692257 AATCCTCATCCGACCATCATC 57.308 47.619 0.00 0.00 0.00 2.92
157 158 4.443978 AAAATCCTCATCCGACCATCAT 57.556 40.909 0.00 0.00 0.00 2.45
158 159 3.931907 AAAATCCTCATCCGACCATCA 57.068 42.857 0.00 0.00 0.00 3.07
159 160 4.202367 ACCTAAAATCCTCATCCGACCATC 60.202 45.833 0.00 0.00 0.00 3.51
160 161 3.716872 ACCTAAAATCCTCATCCGACCAT 59.283 43.478 0.00 0.00 0.00 3.55
161 162 3.112263 ACCTAAAATCCTCATCCGACCA 58.888 45.455 0.00 0.00 0.00 4.02
162 163 3.840124 ACCTAAAATCCTCATCCGACC 57.160 47.619 0.00 0.00 0.00 4.79
163 164 6.158023 TCTAACCTAAAATCCTCATCCGAC 57.842 41.667 0.00 0.00 0.00 4.79
164 165 6.996180 ATCTAACCTAAAATCCTCATCCGA 57.004 37.500 0.00 0.00 0.00 4.55
165 166 7.715249 TCAAATCTAACCTAAAATCCTCATCCG 59.285 37.037 0.00 0.00 0.00 4.18
166 167 8.980481 TCAAATCTAACCTAAAATCCTCATCC 57.020 34.615 0.00 0.00 0.00 3.51
167 168 9.620259 ACTCAAATCTAACCTAAAATCCTCATC 57.380 33.333 0.00 0.00 0.00 2.92
168 169 9.620259 GACTCAAATCTAACCTAAAATCCTCAT 57.380 33.333 0.00 0.00 0.00 2.90
169 170 8.826765 AGACTCAAATCTAACCTAAAATCCTCA 58.173 33.333 0.00 0.00 0.00 3.86
170 171 9.320352 GAGACTCAAATCTAACCTAAAATCCTC 57.680 37.037 0.00 0.00 0.00 3.71
171 172 9.052365 AGAGACTCAAATCTAACCTAAAATCCT 57.948 33.333 5.02 0.00 0.00 3.24
176 177 9.529823 TGACTAGAGACTCAAATCTAACCTAAA 57.470 33.333 5.02 0.00 0.00 1.85
177 178 9.702253 ATGACTAGAGACTCAAATCTAACCTAA 57.298 33.333 5.02 0.00 0.00 2.69
179 180 9.349713 CTATGACTAGAGACTCAAATCTAACCT 57.650 37.037 5.02 0.00 0.00 3.50
180 181 9.127277 ACTATGACTAGAGACTCAAATCTAACC 57.873 37.037 5.02 0.00 0.00 2.85
182 183 9.907229 TGACTATGACTAGAGACTCAAATCTAA 57.093 33.333 5.02 0.00 0.00 2.10
184 185 8.995027 ATGACTATGACTAGAGACTCAAATCT 57.005 34.615 5.02 0.00 0.00 2.40
186 187 9.295825 CCTATGACTATGACTAGAGACTCAAAT 57.704 37.037 5.02 0.00 0.00 2.32
187 188 8.275758 ACCTATGACTATGACTAGAGACTCAAA 58.724 37.037 5.02 0.00 0.00 2.69
188 189 7.717436 CACCTATGACTATGACTAGAGACTCAA 59.283 40.741 5.02 0.00 0.00 3.02
189 190 7.220740 CACCTATGACTATGACTAGAGACTCA 58.779 42.308 5.02 0.00 0.00 3.41
190 191 6.653320 CCACCTATGACTATGACTAGAGACTC 59.347 46.154 0.00 0.00 0.00 3.36
191 192 6.102027 ACCACCTATGACTATGACTAGAGACT 59.898 42.308 0.00 0.00 0.00 3.24
192 193 6.205853 CACCACCTATGACTATGACTAGAGAC 59.794 46.154 0.00 0.00 0.00 3.36
193 194 6.101296 TCACCACCTATGACTATGACTAGAGA 59.899 42.308 0.00 0.00 0.00 3.10
194 195 6.299922 TCACCACCTATGACTATGACTAGAG 58.700 44.000 0.00 0.00 0.00 2.43
195 196 6.101296 TCTCACCACCTATGACTATGACTAGA 59.899 42.308 0.00 0.00 0.00 2.43
196 197 6.205853 GTCTCACCACCTATGACTATGACTAG 59.794 46.154 0.00 0.00 0.00 2.57
197 198 6.062749 GTCTCACCACCTATGACTATGACTA 58.937 44.000 0.00 0.00 0.00 2.59
198 199 4.890581 GTCTCACCACCTATGACTATGACT 59.109 45.833 0.00 0.00 0.00 3.41
199 200 4.261238 CGTCTCACCACCTATGACTATGAC 60.261 50.000 0.00 0.00 0.00 3.06
200 201 3.883489 CGTCTCACCACCTATGACTATGA 59.117 47.826 0.00 0.00 0.00 2.15
201 202 3.883489 TCGTCTCACCACCTATGACTATG 59.117 47.826 0.00 0.00 0.00 2.23
202 203 3.884091 GTCGTCTCACCACCTATGACTAT 59.116 47.826 0.00 0.00 0.00 2.12
203 204 3.276857 GTCGTCTCACCACCTATGACTA 58.723 50.000 0.00 0.00 0.00 2.59
204 205 2.093106 GTCGTCTCACCACCTATGACT 58.907 52.381 0.00 0.00 0.00 3.41
205 206 1.202154 CGTCGTCTCACCACCTATGAC 60.202 57.143 0.00 0.00 0.00 3.06
206 207 1.092348 CGTCGTCTCACCACCTATGA 58.908 55.000 0.00 0.00 0.00 2.15
207 208 0.100682 CCGTCGTCTCACCACCTATG 59.899 60.000 0.00 0.00 0.00 2.23
208 209 1.035932 CCCGTCGTCTCACCACCTAT 61.036 60.000 0.00 0.00 0.00 2.57
209 210 1.676635 CCCGTCGTCTCACCACCTA 60.677 63.158 0.00 0.00 0.00 3.08
210 211 2.989824 CCCGTCGTCTCACCACCT 60.990 66.667 0.00 0.00 0.00 4.00
211 212 4.065281 CCCCGTCGTCTCACCACC 62.065 72.222 0.00 0.00 0.00 4.61
212 213 4.736896 GCCCCGTCGTCTCACCAC 62.737 72.222 0.00 0.00 0.00 4.16
214 215 3.718210 GATGCCCCGTCGTCTCACC 62.718 68.421 0.00 0.00 0.00 4.02
215 216 2.202756 GATGCCCCGTCGTCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
216 217 2.678580 TGATGCCCCGTCGTCTCA 60.679 61.111 0.00 0.00 0.00 3.27
217 218 2.202756 GTGATGCCCCGTCGTCTC 60.203 66.667 0.00 0.00 0.00 3.36
218 219 3.771160 GGTGATGCCCCGTCGTCT 61.771 66.667 0.00 0.00 0.00 4.18
225 226 1.152963 ATGCTAACGGTGATGCCCC 60.153 57.895 0.00 0.00 0.00 5.80
226 227 1.447317 CCATGCTAACGGTGATGCCC 61.447 60.000 0.00 0.00 0.00 5.36
227 228 0.463654 TCCATGCTAACGGTGATGCC 60.464 55.000 0.00 0.00 0.00 4.40
228 229 1.378531 TTCCATGCTAACGGTGATGC 58.621 50.000 0.00 0.00 0.00 3.91
229 230 4.816385 ACTTATTCCATGCTAACGGTGATG 59.184 41.667 0.00 0.00 0.00 3.07
230 231 5.036117 ACTTATTCCATGCTAACGGTGAT 57.964 39.130 0.00 0.00 0.00 3.06
231 232 4.439057 GACTTATTCCATGCTAACGGTGA 58.561 43.478 0.00 0.00 0.00 4.02
232 233 3.560068 GGACTTATTCCATGCTAACGGTG 59.440 47.826 0.00 0.00 45.10 4.94
233 234 3.805207 GGACTTATTCCATGCTAACGGT 58.195 45.455 0.00 0.00 45.10 4.83
239 240 8.120539 CAGAATGAAGAGGACTTATTCCATGCT 61.121 40.741 0.00 0.00 43.71 3.79
240 241 6.017275 CAGAATGAAGAGGACTTATTCCATGC 60.017 42.308 0.00 0.00 43.71 4.06
241 242 6.485984 CCAGAATGAAGAGGACTTATTCCATG 59.514 42.308 0.00 0.00 43.71 3.66
242 243 6.159398 ACCAGAATGAAGAGGACTTATTCCAT 59.841 38.462 0.00 0.00 43.71 3.41
243 244 5.488919 ACCAGAATGAAGAGGACTTATTCCA 59.511 40.000 0.00 0.00 43.71 3.53
244 245 5.819901 CACCAGAATGAAGAGGACTTATTCC 59.180 44.000 0.00 0.00 41.99 3.01
245 246 5.819901 CCACCAGAATGAAGAGGACTTATTC 59.180 44.000 0.00 0.00 39.69 1.75
246 247 5.749462 CCACCAGAATGAAGAGGACTTATT 58.251 41.667 0.00 0.00 39.69 1.40
247 248 4.384647 GCCACCAGAATGAAGAGGACTTAT 60.385 45.833 0.00 0.00 39.69 1.73
248 249 3.055094 GCCACCAGAATGAAGAGGACTTA 60.055 47.826 0.00 0.00 39.69 2.24
249 250 2.290577 GCCACCAGAATGAAGAGGACTT 60.291 50.000 0.00 0.00 39.69 3.01
250 251 1.280421 GCCACCAGAATGAAGAGGACT 59.720 52.381 0.00 0.00 39.69 3.85
251 252 1.743996 GCCACCAGAATGAAGAGGAC 58.256 55.000 0.00 0.00 39.69 3.85
252 253 0.250234 CGCCACCAGAATGAAGAGGA 59.750 55.000 0.00 0.00 39.69 3.71
253 254 1.372087 GCGCCACCAGAATGAAGAGG 61.372 60.000 0.00 0.00 39.69 3.69
254 255 0.392193 AGCGCCACCAGAATGAAGAG 60.392 55.000 2.29 0.00 39.69 2.85
255 256 0.901827 TAGCGCCACCAGAATGAAGA 59.098 50.000 2.29 0.00 39.69 2.87
256 257 1.009829 GTAGCGCCACCAGAATGAAG 58.990 55.000 2.29 0.00 39.69 3.02
257 258 0.392461 GGTAGCGCCACCAGAATGAA 60.392 55.000 20.69 0.00 38.55 2.57
258 259 1.220749 GGTAGCGCCACCAGAATGA 59.779 57.895 20.69 0.00 38.55 2.57
259 260 1.819632 GGGTAGCGCCACCAGAATG 60.820 63.158 26.30 0.00 40.65 2.67
260 261 2.590092 GGGTAGCGCCACCAGAAT 59.410 61.111 26.30 0.00 40.65 2.40
261 262 3.712907 GGGGTAGCGCCACCAGAA 61.713 66.667 26.30 0.00 40.65 3.02
262 263 2.808761 TAAGGGGTAGCGCCACCAGA 62.809 60.000 26.30 5.36 43.41 3.86
263 264 1.696097 ATAAGGGGTAGCGCCACCAG 61.696 60.000 26.30 0.00 43.41 4.00
264 265 1.691337 ATAAGGGGTAGCGCCACCA 60.691 57.895 26.30 6.27 43.41 4.17
265 266 1.227853 CATAAGGGGTAGCGCCACC 60.228 63.158 17.40 17.40 43.41 4.61
266 267 1.892391 GCATAAGGGGTAGCGCCAC 60.892 63.158 2.29 0.00 42.42 5.01
267 268 1.632018 AAGCATAAGGGGTAGCGCCA 61.632 55.000 2.29 0.00 39.05 5.69
268 269 0.885150 GAAGCATAAGGGGTAGCGCC 60.885 60.000 2.29 0.00 36.67 6.53
269 270 1.222115 CGAAGCATAAGGGGTAGCGC 61.222 60.000 0.00 0.00 0.00 5.92
270 271 0.104304 ACGAAGCATAAGGGGTAGCG 59.896 55.000 0.00 0.00 0.00 4.26
271 272 2.364647 AGTACGAAGCATAAGGGGTAGC 59.635 50.000 0.00 0.00 0.00 3.58
272 273 5.979288 ATAGTACGAAGCATAAGGGGTAG 57.021 43.478 0.00 0.00 0.00 3.18
273 274 6.736110 AAATAGTACGAAGCATAAGGGGTA 57.264 37.500 0.00 0.00 0.00 3.69
274 275 5.625568 AAATAGTACGAAGCATAAGGGGT 57.374 39.130 0.00 0.00 0.00 4.95
275 276 6.518493 TGTAAATAGTACGAAGCATAAGGGG 58.482 40.000 0.00 0.00 0.00 4.79
276 277 7.870954 TCATGTAAATAGTACGAAGCATAAGGG 59.129 37.037 0.00 0.00 0.00 3.95
277 278 8.812147 TCATGTAAATAGTACGAAGCATAAGG 57.188 34.615 0.00 0.00 0.00 2.69
278 279 9.678941 TCTCATGTAAATAGTACGAAGCATAAG 57.321 33.333 0.00 0.00 0.00 1.73
281 282 8.942338 TTTCTCATGTAAATAGTACGAAGCAT 57.058 30.769 0.00 0.00 0.00 3.79
282 283 8.942338 ATTTCTCATGTAAATAGTACGAAGCA 57.058 30.769 6.91 0.00 0.00 3.91
299 300 5.895534 AGGCAAACATGATGGTATTTCTCAT 59.104 36.000 0.00 0.00 0.00 2.90
300 301 5.263599 AGGCAAACATGATGGTATTTCTCA 58.736 37.500 0.00 0.00 0.00 3.27
301 302 5.221126 GGAGGCAAACATGATGGTATTTCTC 60.221 44.000 0.00 0.00 0.00 2.87
302 303 4.646492 GGAGGCAAACATGATGGTATTTCT 59.354 41.667 0.00 0.00 0.00 2.52
303 304 4.402155 TGGAGGCAAACATGATGGTATTTC 59.598 41.667 0.00 0.00 0.00 2.17
304 305 4.352009 TGGAGGCAAACATGATGGTATTT 58.648 39.130 0.00 0.00 0.00 1.40
305 306 3.979911 TGGAGGCAAACATGATGGTATT 58.020 40.909 0.00 0.00 0.00 1.89
306 307 3.668141 TGGAGGCAAACATGATGGTAT 57.332 42.857 0.00 0.00 0.00 2.73
307 308 3.448093 TTGGAGGCAAACATGATGGTA 57.552 42.857 0.00 0.00 0.00 3.25
308 309 2.307496 TTGGAGGCAAACATGATGGT 57.693 45.000 0.00 0.00 0.00 3.55
309 310 3.431207 GGAATTGGAGGCAAACATGATGG 60.431 47.826 0.00 0.00 0.00 3.51
310 311 3.431207 GGGAATTGGAGGCAAACATGATG 60.431 47.826 0.00 0.00 0.00 3.07
311 312 2.767960 GGGAATTGGAGGCAAACATGAT 59.232 45.455 0.00 0.00 0.00 2.45
312 313 2.178580 GGGAATTGGAGGCAAACATGA 58.821 47.619 0.00 0.00 0.00 3.07
313 314 1.207811 GGGGAATTGGAGGCAAACATG 59.792 52.381 0.00 0.00 0.00 3.21
314 315 1.571955 GGGGAATTGGAGGCAAACAT 58.428 50.000 0.00 0.00 0.00 2.71
315 316 0.544120 GGGGGAATTGGAGGCAAACA 60.544 55.000 0.00 0.00 0.00 2.83
316 317 0.252239 AGGGGGAATTGGAGGCAAAC 60.252 55.000 0.00 0.00 0.00 2.93
317 318 0.041090 GAGGGGGAATTGGAGGCAAA 59.959 55.000 0.00 0.00 0.00 3.68
318 319 1.697297 GAGGGGGAATTGGAGGCAA 59.303 57.895 0.00 0.00 0.00 4.52
319 320 2.679342 CGAGGGGGAATTGGAGGCA 61.679 63.158 0.00 0.00 0.00 4.75
320 321 2.193248 CGAGGGGGAATTGGAGGC 59.807 66.667 0.00 0.00 0.00 4.70
321 322 1.527370 GACGAGGGGGAATTGGAGG 59.473 63.158 0.00 0.00 0.00 4.30
322 323 1.144057 CGACGAGGGGGAATTGGAG 59.856 63.158 0.00 0.00 0.00 3.86
323 324 3.026431 GCGACGAGGGGGAATTGGA 62.026 63.158 0.00 0.00 0.00 3.53
324 325 2.513897 GCGACGAGGGGGAATTGG 60.514 66.667 0.00 0.00 0.00 3.16
325 326 2.513897 GGCGACGAGGGGGAATTG 60.514 66.667 0.00 0.00 0.00 2.32
337 338 4.760047 AGTGGATGTGGCGGCGAC 62.760 66.667 12.98 9.31 0.00 5.19
338 339 4.015406 AAGTGGATGTGGCGGCGA 62.015 61.111 12.98 0.00 0.00 5.54
339 340 3.803082 CAAGTGGATGTGGCGGCG 61.803 66.667 0.51 0.51 0.00 6.46
340 341 1.805428 AAACAAGTGGATGTGGCGGC 61.805 55.000 0.00 0.00 32.81 6.53
341 342 0.039256 CAAACAAGTGGATGTGGCGG 60.039 55.000 0.00 0.00 32.81 6.13
342 343 0.039256 CCAAACAAGTGGATGTGGCG 60.039 55.000 0.00 0.00 41.65 5.69
343 344 1.327303 TCCAAACAAGTGGATGTGGC 58.673 50.000 0.00 0.00 42.97 5.01
360 361 0.462047 GTCGGTGGTGATGGACATCC 60.462 60.000 9.61 0.00 37.02 3.51
361 362 0.806102 CGTCGGTGGTGATGGACATC 60.806 60.000 5.37 5.37 38.29 3.06
362 363 1.218047 CGTCGGTGGTGATGGACAT 59.782 57.895 0.00 0.00 0.00 3.06
363 364 2.654289 CGTCGGTGGTGATGGACA 59.346 61.111 0.00 0.00 0.00 4.02
364 365 2.813908 GCGTCGGTGGTGATGGAC 60.814 66.667 0.00 0.00 0.00 4.02
365 366 4.077184 GGCGTCGGTGGTGATGGA 62.077 66.667 0.00 0.00 0.00 3.41
366 367 2.717044 TAGGCGTCGGTGGTGATGG 61.717 63.158 0.00 0.00 0.00 3.51
367 368 1.518572 GTAGGCGTCGGTGGTGATG 60.519 63.158 0.00 0.00 0.00 3.07
368 369 2.718073 GGTAGGCGTCGGTGGTGAT 61.718 63.158 0.00 0.00 0.00 3.06
369 370 3.376078 GGTAGGCGTCGGTGGTGA 61.376 66.667 0.00 0.00 0.00 4.02
370 371 3.352338 GAGGTAGGCGTCGGTGGTG 62.352 68.421 0.00 0.00 0.00 4.17
371 372 3.066814 GAGGTAGGCGTCGGTGGT 61.067 66.667 0.00 0.00 0.00 4.16
372 373 3.834799 GGAGGTAGGCGTCGGTGG 61.835 72.222 0.00 0.00 0.00 4.61
373 374 1.956629 AATGGAGGTAGGCGTCGGTG 61.957 60.000 0.00 0.00 0.00 4.94
374 375 1.684734 AATGGAGGTAGGCGTCGGT 60.685 57.895 0.00 0.00 0.00 4.69
375 376 1.227263 CAATGGAGGTAGGCGTCGG 60.227 63.158 0.00 0.00 0.00 4.79
376 377 0.527817 GACAATGGAGGTAGGCGTCG 60.528 60.000 0.00 0.00 0.00 5.12
377 378 0.527817 CGACAATGGAGGTAGGCGTC 60.528 60.000 0.00 0.00 0.00 5.19
378 379 1.515954 CGACAATGGAGGTAGGCGT 59.484 57.895 0.00 0.00 0.00 5.68
379 380 1.883084 GCGACAATGGAGGTAGGCG 60.883 63.158 0.00 0.00 0.00 5.52
380 381 1.523938 GGCGACAATGGAGGTAGGC 60.524 63.158 0.00 0.00 0.00 3.93
381 382 1.904771 TGGCGACAATGGAGGTAGG 59.095 57.895 0.00 0.00 37.44 3.18
397 398 3.443045 GTGGGAGGTGCGCATTGG 61.443 66.667 15.91 0.00 41.83 3.16
398 399 3.443045 GGTGGGAGGTGCGCATTG 61.443 66.667 15.91 0.00 41.83 2.82
399 400 3.210012 AAGGTGGGAGGTGCGCATT 62.210 57.895 15.91 4.92 41.83 3.56
400 401 3.628646 GAAGGTGGGAGGTGCGCAT 62.629 63.158 15.91 0.00 41.83 4.73
401 402 4.329545 GAAGGTGGGAGGTGCGCA 62.330 66.667 5.66 5.66 37.07 6.09
402 403 3.959991 GAGAAGGTGGGAGGTGCGC 62.960 68.421 0.00 0.00 0.00 6.09
403 404 2.266055 GAGAAGGTGGGAGGTGCG 59.734 66.667 0.00 0.00 0.00 5.34
404 405 1.566298 ATGGAGAAGGTGGGAGGTGC 61.566 60.000 0.00 0.00 0.00 5.01
410 411 4.164988 ACTTCATTCTATGGAGAAGGTGGG 59.835 45.833 11.24 0.00 44.90 4.61
411 412 5.121811 CACTTCATTCTATGGAGAAGGTGG 58.878 45.833 11.24 0.00 44.90 4.61
414 415 5.982356 TCACACTTCATTCTATGGAGAAGG 58.018 41.667 11.24 0.00 44.90 3.46
421 422 6.406370 TGTTACCCTCACACTTCATTCTATG 58.594 40.000 0.00 0.00 0.00 2.23
423 424 6.620877 ATGTTACCCTCACACTTCATTCTA 57.379 37.500 0.00 0.00 0.00 2.10
428 429 7.490657 AGTATTATGTTACCCTCACACTTCA 57.509 36.000 0.00 0.00 0.00 3.02
459 461 3.644966 ACCAACTCTTCCACTTTCACA 57.355 42.857 0.00 0.00 0.00 3.58
501 503 4.035441 AGTTTATCCTCGACTAAGCGACTC 59.965 45.833 0.00 0.00 36.17 3.36
510 512 5.763698 TCATCGTCATAGTTTATCCTCGACT 59.236 40.000 0.00 0.00 0.00 4.18
515 517 7.556844 ACAGTTTCATCGTCATAGTTTATCCT 58.443 34.615 0.00 0.00 0.00 3.24
519 521 7.330946 CCAGAACAGTTTCATCGTCATAGTTTA 59.669 37.037 0.00 0.00 33.72 2.01
522 524 5.171476 CCAGAACAGTTTCATCGTCATAGT 58.829 41.667 0.00 0.00 33.72 2.12
523 525 4.033358 GCCAGAACAGTTTCATCGTCATAG 59.967 45.833 0.00 0.00 33.72 2.23
524 526 3.932710 GCCAGAACAGTTTCATCGTCATA 59.067 43.478 0.00 0.00 33.72 2.15
525 527 2.744202 GCCAGAACAGTTTCATCGTCAT 59.256 45.455 0.00 0.00 33.72 3.06
526 528 2.143122 GCCAGAACAGTTTCATCGTCA 58.857 47.619 0.00 0.00 33.72 4.35
527 529 2.143122 TGCCAGAACAGTTTCATCGTC 58.857 47.619 0.00 0.00 33.72 4.20
528 530 2.254546 TGCCAGAACAGTTTCATCGT 57.745 45.000 0.00 0.00 33.72 3.73
535 537 2.024414 GTTGAGGTTGCCAGAACAGTT 58.976 47.619 0.00 0.00 0.00 3.16
541 543 1.371183 CTCCGTTGAGGTTGCCAGA 59.629 57.895 0.00 0.00 41.99 3.86
572 574 2.796483 TACACATGTCACCGCAGCCC 62.796 60.000 0.00 0.00 0.00 5.19
573 575 1.361668 CTACACATGTCACCGCAGCC 61.362 60.000 0.00 0.00 0.00 4.85
574 576 1.361668 CCTACACATGTCACCGCAGC 61.362 60.000 0.00 0.00 0.00 5.25
575 577 1.361668 GCCTACACATGTCACCGCAG 61.362 60.000 0.00 0.00 0.00 5.18
576 578 1.375396 GCCTACACATGTCACCGCA 60.375 57.895 0.00 0.00 0.00 5.69
577 579 2.106683 GGCCTACACATGTCACCGC 61.107 63.158 0.00 0.00 0.00 5.68
578 580 0.036388 AAGGCCTACACATGTCACCG 60.036 55.000 5.16 0.00 0.00 4.94
584 586 1.176527 CCCACAAAGGCCTACACATG 58.823 55.000 5.16 3.10 35.39 3.21
585 587 0.777446 ACCCACAAAGGCCTACACAT 59.223 50.000 5.16 0.00 35.39 3.21
607 626 1.150536 GGACACCCAGCCAAACAGA 59.849 57.895 0.00 0.00 0.00 3.41
609 628 1.152777 CAGGACACCCAGCCAAACA 60.153 57.895 0.00 0.00 33.88 2.83
616 635 0.250467 CCACAAGACAGGACACCCAG 60.250 60.000 0.00 0.00 33.88 4.45
629 648 4.282068 CAGACGAAAAACATGTCCACAAG 58.718 43.478 0.00 0.00 33.09 3.16
706 725 6.934083 GGCTGTTCCATTTTTCCTTTTTATGA 59.066 34.615 0.00 0.00 34.01 2.15
708 727 6.936335 CAGGCTGTTCCATTTTTCCTTTTTAT 59.064 34.615 6.28 0.00 37.29 1.40
709 728 6.098982 TCAGGCTGTTCCATTTTTCCTTTTTA 59.901 34.615 15.27 0.00 37.29 1.52
721 740 2.450476 GTCCAAATCAGGCTGTTCCAT 58.550 47.619 15.27 0.00 37.29 3.41
727 746 0.682209 CCAGGGTCCAAATCAGGCTG 60.682 60.000 8.58 8.58 0.00 4.85
736 755 0.902531 GATCGAAGTCCAGGGTCCAA 59.097 55.000 0.00 0.00 0.00 3.53
737 756 1.320344 CGATCGAAGTCCAGGGTCCA 61.320 60.000 10.26 0.00 0.00 4.02
738 757 1.437986 CGATCGAAGTCCAGGGTCC 59.562 63.158 10.26 0.00 0.00 4.46
739 758 1.035932 TCCGATCGAAGTCCAGGGTC 61.036 60.000 18.66 0.00 0.00 4.46
740 759 1.000019 TCCGATCGAAGTCCAGGGT 60.000 57.895 18.66 0.00 0.00 4.34
741 760 1.437986 GTCCGATCGAAGTCCAGGG 59.562 63.158 18.66 0.00 0.00 4.45
742 761 1.064296 CGTCCGATCGAAGTCCAGG 59.936 63.158 18.66 0.00 0.00 4.45
837 861 1.691163 GGAGGGGAGAGGAAAGGAGAG 60.691 61.905 0.00 0.00 0.00 3.20
878 909 3.741476 GAGGCCCGTACGTGTCGT 61.741 66.667 15.21 4.16 44.35 4.34
894 925 2.363795 CCCTGGCTCGTGGTAGGA 60.364 66.667 0.00 0.00 31.91 2.94
895 926 2.291043 AACCCTGGCTCGTGGTAGG 61.291 63.158 0.00 0.00 0.00 3.18
896 927 1.079127 CAACCCTGGCTCGTGGTAG 60.079 63.158 0.00 0.00 0.00 3.18
897 928 2.589157 CCAACCCTGGCTCGTGGTA 61.589 63.158 0.00 0.00 35.39 3.25
898 929 3.953775 CCAACCCTGGCTCGTGGT 61.954 66.667 0.00 0.00 35.39 4.16
918 955 1.674057 CTTGGCTCGGACAGACCTT 59.326 57.895 0.00 0.00 36.31 3.50
922 959 0.034896 GAAACCTTGGCTCGGACAGA 59.965 55.000 0.00 0.00 0.00 3.41
928 965 2.668212 TGCGGAAACCTTGGCTCG 60.668 61.111 0.00 0.00 0.00 5.03
933 970 0.109597 GATGCAGTGCGGAAACCTTG 60.110 55.000 11.20 0.00 0.00 3.61
935 972 0.674895 GAGATGCAGTGCGGAAACCT 60.675 55.000 11.20 0.67 0.00 3.50
950 988 1.180907 TCTTCGTCAGCAGCTGAGAT 58.819 50.000 26.08 0.00 41.46 2.75
951 989 0.961753 TTCTTCGTCAGCAGCTGAGA 59.038 50.000 26.08 20.22 41.46 3.27
954 992 1.066914 GAGTTCTTCGTCAGCAGCTG 58.933 55.000 17.10 17.10 0.00 4.24
956 994 1.016653 GGGAGTTCTTCGTCAGCAGC 61.017 60.000 0.00 0.00 0.00 5.25
958 996 0.976641 ATGGGAGTTCTTCGTCAGCA 59.023 50.000 0.00 0.00 0.00 4.41
977 1015 2.360191 GCTGGGATTTGGGGCTGA 59.640 61.111 0.00 0.00 0.00 4.26
1118 1156 5.629079 GTCCAAGACCTTAAGAACAATGG 57.371 43.478 3.36 9.80 0.00 3.16
1134 1172 1.884067 GCAGAACAAGGGAGGTCCAAG 60.884 57.143 0.00 0.00 38.24 3.61
1172 1210 4.554363 CGCGCAGACTCCCTACCG 62.554 72.222 8.75 0.00 0.00 4.02
1301 1339 3.832527 TGTGGAAAAAGAAGGAAGGGAG 58.167 45.455 0.00 0.00 0.00 4.30
1353 1394 0.172578 CACATTGGCTGCATCACCAG 59.827 55.000 0.50 0.00 37.24 4.00
1356 1397 0.245539 AAGCACATTGGCTGCATCAC 59.754 50.000 0.50 0.00 45.07 3.06
1429 1473 5.393866 TCCCCTTTCTTTCAAAATAGCACT 58.606 37.500 0.00 0.00 0.00 4.40
1437 1481 8.899887 AATTATCATCTCCCCTTTCTTTCAAA 57.100 30.769 0.00 0.00 0.00 2.69
1457 1501 6.997476 ACCAAAACAGACATGCCAAAAATTAT 59.003 30.769 0.00 0.00 0.00 1.28
1501 1566 3.896888 GGGAATATTGCAACCATGGATCA 59.103 43.478 21.47 9.96 0.00 2.92
1502 1567 4.021719 CAGGGAATATTGCAACCATGGATC 60.022 45.833 21.47 7.22 31.78 3.36
1503 1568 3.899360 CAGGGAATATTGCAACCATGGAT 59.101 43.478 21.47 2.68 31.78 3.41
1504 1569 3.298619 CAGGGAATATTGCAACCATGGA 58.701 45.455 21.47 0.00 31.78 3.41
1615 1681 0.254178 ACCCCTTGCAGATGCTACAG 59.746 55.000 6.35 0.00 42.66 2.74
2039 2105 8.612145 ACCCTCCTTGTACATTCTTAATAGTTT 58.388 33.333 0.00 0.00 0.00 2.66
2081 2147 3.966979 ACACAGATAATGACCATTGGCA 58.033 40.909 1.54 2.36 32.50 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.