Multiple sequence alignment - TraesCS7D01G381700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G381700 chr7D 100.000 2519 0 0 1 2519 495823207 495825725 0.000000e+00 4652
1 TraesCS7D01G381700 chr7B 89.639 2191 121 51 386 2519 524046930 524049071 0.000000e+00 2691
2 TraesCS7D01G381700 chr7A 83.494 1345 109 46 1218 2519 561592008 561593282 0.000000e+00 1149
3 TraesCS7D01G381700 chr7A 83.868 1091 59 33 167 1233 561590993 561591990 0.000000e+00 931
4 TraesCS7D01G381700 chr7A 82.899 345 31 17 841 1181 190479127 190479447 4.100000e-73 285
5 TraesCS7D01G381700 chr7A 87.861 173 20 1 1 173 561590683 561590854 4.250000e-48 202
6 TraesCS7D01G381700 chr5B 81.862 623 73 25 1913 2519 144234718 144234120 2.910000e-134 488
7 TraesCS7D01G381700 chr5B 81.682 333 38 16 842 1172 144235673 144235362 3.220000e-64 255
8 TraesCS7D01G381700 chr2B 79.355 620 78 27 1913 2515 191535923 191535337 8.450000e-105 390
9 TraesCS7D01G381700 chr5D 83.678 435 40 15 1425 1842 352938167 352937747 5.080000e-102 381
10 TraesCS7D01G381700 chr5D 81.711 339 31 18 844 1172 352938573 352938256 1.160000e-63 254
11 TraesCS7D01G381700 chr5D 85.380 171 22 2 54 224 475152954 475153121 9.260000e-40 174
12 TraesCS7D01G381700 chr4A 92.157 153 11 1 57 209 597343956 597343805 5.460000e-52 215
13 TraesCS7D01G381700 chr6D 87.059 170 20 1 56 225 409773843 409774010 9.200000e-45 191
14 TraesCS7D01G381700 chr3A 86.982 169 19 2 56 224 681178213 681178048 1.190000e-43 187
15 TraesCS7D01G381700 chr3A 86.667 165 19 2 58 222 356085367 356085206 1.990000e-41 180
16 TraesCS7D01G381700 chr3A 86.145 166 20 2 57 222 728770973 728770811 2.580000e-40 176
17 TraesCS7D01G381700 chr1D 85.714 168 20 3 58 224 371189032 371188868 9.260000e-40 174
18 TraesCS7D01G381700 chr2D 84.270 178 22 6 57 231 552076768 552076594 4.310000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G381700 chr7D 495823207 495825725 2518 False 4652.000000 4652 100.000000 1 2519 1 chr7D.!!$F1 2518
1 TraesCS7D01G381700 chr7B 524046930 524049071 2141 False 2691.000000 2691 89.639000 386 2519 1 chr7B.!!$F1 2133
2 TraesCS7D01G381700 chr7A 561590683 561593282 2599 False 760.666667 1149 85.074333 1 2519 3 chr7A.!!$F2 2518
3 TraesCS7D01G381700 chr5B 144234120 144235673 1553 True 371.500000 488 81.772000 842 2519 2 chr5B.!!$R1 1677
4 TraesCS7D01G381700 chr2B 191535337 191535923 586 True 390.000000 390 79.355000 1913 2515 1 chr2B.!!$R1 602
5 TraesCS7D01G381700 chr5D 352937747 352938573 826 True 317.500000 381 82.694500 844 1842 2 chr5D.!!$R1 998

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
47 48 0.233848 CGGGTTTCGTGGAGTTTTCG 59.766 55.0 0.0 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 2112 0.961753 TGCGCTGAAGAAGACTCTGA 59.038 50.0 9.73 0.0 30.03 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.463654 TGTGTGTTGTGAGCTCACCC 60.464 55.000 37.23 28.52 45.88 4.61
29 30 1.227527 TGTGTTGTGAGCTCACCCG 60.228 57.895 37.23 0.00 45.88 5.28
38 39 3.047877 GCTCACCCGGGTTTCGTG 61.048 66.667 27.83 15.31 37.11 4.35
42 43 2.845795 ACCCGGGTTTCGTGGAGT 60.846 61.111 24.16 0.00 37.11 3.85
47 48 0.233848 CGGGTTTCGTGGAGTTTTCG 59.766 55.000 0.00 0.00 0.00 3.46
48 49 1.585297 GGGTTTCGTGGAGTTTTCGA 58.415 50.000 0.00 0.00 0.00 3.71
51 52 2.286008 GGTTTCGTGGAGTTTTCGACAC 60.286 50.000 0.00 0.00 34.81 3.67
67 68 2.506444 GACACCTCTATACTCCCTCCG 58.494 57.143 0.00 0.00 0.00 4.63
70 71 3.297736 CACCTCTATACTCCCTCCGTTT 58.702 50.000 0.00 0.00 0.00 3.60
71 72 3.318557 CACCTCTATACTCCCTCCGTTTC 59.681 52.174 0.00 0.00 0.00 2.78
109 110 7.451731 TTTTAGAGATCCCAATGTGGACTAT 57.548 36.000 0.00 0.00 40.96 2.12
115 116 9.653516 AGAGATCCCAATGTGGACTATATATAG 57.346 37.037 16.73 16.73 40.96 1.31
223 369 6.600882 ATTTAGGAAAACGGAGAGAGTACA 57.399 37.500 0.00 0.00 0.00 2.90
332 478 1.674221 GCCAAAGCTCACACGAGATCT 60.674 52.381 0.00 0.00 42.34 2.75
552 710 3.285484 CTGCCTGCAGGTCAGATAAAAT 58.715 45.455 35.00 0.00 45.72 1.82
579 738 5.784177 TGTTAACTGATGGACTGAGAGTTC 58.216 41.667 7.22 0.00 0.00 3.01
585 744 3.840078 TGATGGACTGAGAGTTCCATGAA 59.160 43.478 7.71 0.00 36.75 2.57
586 745 4.286808 TGATGGACTGAGAGTTCCATGAAA 59.713 41.667 7.71 0.00 36.75 2.69
588 747 5.246981 TGGACTGAGAGTTCCATGAAAAT 57.753 39.130 0.00 0.00 0.00 1.82
590 749 5.707298 TGGACTGAGAGTTCCATGAAAATTC 59.293 40.000 0.00 0.00 0.00 2.17
594 759 7.000472 ACTGAGAGTTCCATGAAAATTCAAGA 59.000 34.615 0.00 0.00 41.13 3.02
605 770 2.787473 AATTCAAGATGCCGGTCAGA 57.213 45.000 1.90 0.00 0.00 3.27
608 773 2.890808 TCAAGATGCCGGTCAGATAC 57.109 50.000 1.90 0.00 0.00 2.24
624 789 2.194951 ATACCTGGCCCCTCTCCACA 62.195 60.000 0.00 0.00 0.00 4.17
651 816 5.299782 TGCATGATTGATTTGATTCGATCCA 59.700 36.000 0.00 0.00 36.19 3.41
753 918 2.948323 CACGCATGCAAGCAGACA 59.052 55.556 19.57 0.00 0.00 3.41
754 919 1.283487 CACGCATGCAAGCAGACAA 59.717 52.632 19.57 0.00 0.00 3.18
755 920 0.728129 CACGCATGCAAGCAGACAAG 60.728 55.000 19.57 0.00 0.00 3.16
827 992 2.187946 GTCACCTCCATCCGCCAG 59.812 66.667 0.00 0.00 0.00 4.85
1194 1380 4.377897 ACAAGTACGAGCAAGCTAAACTT 58.622 39.130 9.19 9.19 40.05 2.66
1247 1492 2.717639 ATTTCCACGGGGAGAAGATG 57.282 50.000 6.46 0.00 46.01 2.90
1251 1504 0.613260 CCACGGGGAGAAGATGACAA 59.387 55.000 0.00 0.00 35.59 3.18
1266 1519 6.058553 AGATGACAAGTGATGATTCTTGGA 57.941 37.500 13.01 3.54 43.40 3.53
1275 1528 2.048444 TGATTCTTGGAGCTGATGCC 57.952 50.000 0.00 0.00 40.80 4.40
1532 1792 2.607187 CAGCTAGTTGTAGGTTGACGG 58.393 52.381 0.00 0.00 34.64 4.79
1702 1992 4.437930 GGATCTCAAGAATGTTTTCCTGCG 60.438 45.833 0.00 0.00 31.84 5.18
1727 2025 5.813157 TGTTATTGCTGCGTATGCTAAAGTA 59.187 36.000 8.69 0.00 43.34 2.24
1728 2026 6.314152 TGTTATTGCTGCGTATGCTAAAGTAA 59.686 34.615 8.69 3.75 43.34 2.24
1729 2027 5.811399 ATTGCTGCGTATGCTAAAGTAAA 57.189 34.783 8.69 0.00 43.34 2.01
1730 2028 4.857871 TGCTGCGTATGCTAAAGTAAAG 57.142 40.909 8.69 0.00 43.34 1.85
1731 2029 4.250464 TGCTGCGTATGCTAAAGTAAAGT 58.750 39.130 8.69 0.00 43.34 2.66
1734 2032 3.936453 TGCGTATGCTAAAGTAAAGTGGG 59.064 43.478 8.69 0.00 43.34 4.61
1745 2043 2.237392 AGTAAAGTGGGTCATCAGCTCC 59.763 50.000 0.00 0.00 0.00 4.70
1746 2044 1.067295 AAAGTGGGTCATCAGCTCCA 58.933 50.000 0.00 0.00 0.00 3.86
1747 2045 1.293062 AAGTGGGTCATCAGCTCCAT 58.707 50.000 0.00 0.00 0.00 3.41
1748 2046 2.180946 AGTGGGTCATCAGCTCCATA 57.819 50.000 0.00 0.00 0.00 2.74
1749 2047 1.765314 AGTGGGTCATCAGCTCCATAC 59.235 52.381 0.00 0.00 0.00 2.39
1750 2048 1.765314 GTGGGTCATCAGCTCCATACT 59.235 52.381 0.00 0.00 0.00 2.12
1751 2049 2.965831 GTGGGTCATCAGCTCCATACTA 59.034 50.000 0.00 0.00 0.00 1.82
1752 2050 2.965831 TGGGTCATCAGCTCCATACTAC 59.034 50.000 0.00 0.00 0.00 2.73
1784 2110 3.063485 TCATCGATCTAGCTCTCGAGTG 58.937 50.000 13.13 11.53 45.96 3.51
1785 2111 2.892784 TCGATCTAGCTCTCGAGTGA 57.107 50.000 18.27 7.76 38.86 3.41
1786 2112 3.394674 TCGATCTAGCTCTCGAGTGAT 57.605 47.619 18.27 14.34 38.86 3.06
1787 2113 3.322369 TCGATCTAGCTCTCGAGTGATC 58.678 50.000 18.27 17.30 38.86 2.92
1788 2114 3.063485 CGATCTAGCTCTCGAGTGATCA 58.937 50.000 18.27 2.95 37.05 2.92
1789 2115 3.123453 CGATCTAGCTCTCGAGTGATCAG 59.877 52.174 18.27 6.21 37.05 2.90
1790 2116 3.828875 TCTAGCTCTCGAGTGATCAGA 57.171 47.619 18.27 12.39 0.00 3.27
1791 2117 3.727726 TCTAGCTCTCGAGTGATCAGAG 58.272 50.000 18.27 6.67 37.35 3.35
1792 2118 2.418368 AGCTCTCGAGTGATCAGAGT 57.582 50.000 18.27 0.00 36.75 3.24
1800 2126 4.327680 TCGAGTGATCAGAGTCTTCTTCA 58.672 43.478 0.00 0.00 0.00 3.02
1802 2128 4.423732 GAGTGATCAGAGTCTTCTTCAGC 58.576 47.826 0.00 0.00 0.00 4.26
1807 2133 2.138320 CAGAGTCTTCTTCAGCGCAAA 58.862 47.619 11.47 2.02 0.00 3.68
1856 2182 7.563020 TCTCAATGATATGATATCCTGCTTCC 58.437 38.462 9.78 0.00 0.00 3.46
1859 2185 7.402361 TCAATGATATGATATCCTGCTTCCTCT 59.598 37.037 9.78 0.00 0.00 3.69
1884 2214 7.019774 TGTGTAAATAATCTTCTGCATCAGC 57.980 36.000 0.00 0.00 42.57 4.26
1962 2330 5.702065 TCCATAGTAGTAATTGGCACCAA 57.298 39.130 4.24 4.24 40.47 3.67
2046 2423 3.626977 CTCTGTCGCTCTGATACATGTC 58.373 50.000 0.00 0.00 0.00 3.06
2099 2476 8.230486 ACTGCATAAATATTTACATAAGAGCGC 58.770 33.333 10.07 0.00 0.00 5.92
2110 2487 0.829990 TAAGAGCGCCCATCATGTCA 59.170 50.000 2.29 0.00 0.00 3.58
2201 2592 4.096081 CCAGGAGAGATGTGCAAAGAAATC 59.904 45.833 0.00 0.00 0.00 2.17
2272 2663 1.553248 TGCGCCTTTACTGTGTCCTAT 59.447 47.619 4.18 0.00 0.00 2.57
2307 2698 8.398665 CCAAATGGCTACTCTATAACTTTGTTC 58.601 37.037 0.00 0.00 0.00 3.18
2324 2715 2.286950 TGTTCTGTGTTGCGCTTCATTC 60.287 45.455 9.73 0.00 0.00 2.67
2365 2773 5.817816 CCAGGGAACATCTTACATGAGTTAC 59.182 44.000 0.00 0.00 0.00 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.233848 CGAAAACTCCACGAAACCCG 59.766 55.000 0.00 0.00 45.44 5.28
29 30 1.262417 GTCGAAAACTCCACGAAACCC 59.738 52.381 0.00 0.00 37.77 4.11
38 39 5.450274 GGAGTATAGAGGTGTCGAAAACTCC 60.450 48.000 17.30 10.51 41.08 3.85
42 43 4.607239 AGGGAGTATAGAGGTGTCGAAAA 58.393 43.478 0.00 0.00 0.00 2.29
47 48 2.158638 ACGGAGGGAGTATAGAGGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
48 49 1.851653 ACGGAGGGAGTATAGAGGTGT 59.148 52.381 0.00 0.00 0.00 4.16
51 52 3.834938 AGAAACGGAGGGAGTATAGAGG 58.165 50.000 0.00 0.00 0.00 3.69
92 93 8.364142 GCTCTATATATAGTCCACATTGGGATC 58.636 40.741 17.44 0.00 39.62 3.36
95 96 7.423844 TGCTCTATATATAGTCCACATTGGG 57.576 40.000 17.44 0.00 38.32 4.12
113 114 9.607285 GAACGAAAATTCACTTATTTTGCTCTA 57.393 29.630 0.00 0.00 37.72 2.43
114 115 8.352942 AGAACGAAAATTCACTTATTTTGCTCT 58.647 29.630 0.00 0.00 37.72 4.09
115 116 8.507470 AGAACGAAAATTCACTTATTTTGCTC 57.493 30.769 0.00 0.00 37.72 4.26
206 352 3.232771 GACGTGTACTCTCTCCGTTTTC 58.767 50.000 0.00 0.00 0.00 2.29
209 355 1.534595 GTGACGTGTACTCTCTCCGTT 59.465 52.381 0.00 0.00 0.00 4.44
210 356 1.155042 GTGACGTGTACTCTCTCCGT 58.845 55.000 0.00 0.00 0.00 4.69
211 357 1.394227 GAGTGACGTGTACTCTCTCCG 59.606 57.143 17.79 0.00 41.00 4.63
223 369 3.996150 TTAGACCGAAAAGAGTGACGT 57.004 42.857 0.00 0.00 0.00 4.34
236 382 4.260375 GCACTGCACTTTCATATTAGACCG 60.260 45.833 0.00 0.00 0.00 4.79
287 433 3.446873 TGAGCTGCCACTTTTTCTTTGAA 59.553 39.130 0.00 0.00 0.00 2.69
289 435 3.441496 TGAGCTGCCACTTTTTCTTTG 57.559 42.857 0.00 0.00 0.00 2.77
290 436 3.304928 CGATGAGCTGCCACTTTTTCTTT 60.305 43.478 0.00 0.00 0.00 2.52
291 437 2.227388 CGATGAGCTGCCACTTTTTCTT 59.773 45.455 0.00 0.00 0.00 2.52
292 438 1.808945 CGATGAGCTGCCACTTTTTCT 59.191 47.619 0.00 0.00 0.00 2.52
293 439 1.730446 GCGATGAGCTGCCACTTTTTC 60.730 52.381 0.00 0.00 44.04 2.29
294 440 0.242017 GCGATGAGCTGCCACTTTTT 59.758 50.000 0.00 0.00 44.04 1.94
295 441 1.878775 GCGATGAGCTGCCACTTTT 59.121 52.632 0.00 0.00 44.04 2.27
296 442 3.583383 GCGATGAGCTGCCACTTT 58.417 55.556 0.00 0.00 44.04 2.66
332 478 2.338015 GGCACCTCCGTCACGTCTA 61.338 63.158 0.00 0.00 0.00 2.59
372 522 1.230324 GCCGTATGAAATCCAGCTCC 58.770 55.000 0.00 0.00 0.00 4.70
406 556 4.918360 AGGGTGGTGGCCTGGTGA 62.918 66.667 3.32 0.00 0.00 4.02
552 710 4.040339 TCTCAGTCCATCAGTTAACAAGCA 59.960 41.667 8.61 0.00 0.00 3.91
579 738 3.119029 ACCGGCATCTTGAATTTTCATGG 60.119 43.478 0.00 0.00 37.00 3.66
585 744 3.071874 TCTGACCGGCATCTTGAATTT 57.928 42.857 0.00 0.00 0.00 1.82
586 745 2.787473 TCTGACCGGCATCTTGAATT 57.213 45.000 0.00 0.00 0.00 2.17
588 747 2.158957 GGTATCTGACCGGCATCTTGAA 60.159 50.000 0.00 0.00 38.87 2.69
590 749 1.871080 GGTATCTGACCGGCATCTTG 58.129 55.000 0.00 0.00 38.87 3.02
605 770 1.384643 GTGGAGAGGGGCCAGGTAT 60.385 63.158 4.39 0.00 35.77 2.73
608 773 3.406200 CTGTGGAGAGGGGCCAGG 61.406 72.222 4.39 0.00 35.77 4.45
624 789 4.337274 TCGAATCAAATCAATCATGCAGCT 59.663 37.500 0.00 0.00 0.00 4.24
651 816 4.162690 GCCGGGAAGTCGATGGCT 62.163 66.667 2.18 0.00 42.44 4.75
747 912 1.372128 CCCGCTTTTGCTTGTCTGC 60.372 57.895 0.00 0.00 44.80 4.26
752 917 2.048877 CCAGCCCGCTTTTGCTTG 60.049 61.111 0.00 0.00 44.80 4.01
753 918 3.994853 GCCAGCCCGCTTTTGCTT 61.995 61.111 0.00 0.00 44.80 3.91
754 919 4.982701 AGCCAGCCCGCTTTTGCT 62.983 61.111 0.55 0.55 44.80 3.91
755 920 3.994853 AAGCCAGCCCGCTTTTGC 61.995 61.111 2.10 0.00 46.97 3.68
775 940 5.814764 ATATACTATACGACGGAAGGCAG 57.185 43.478 0.00 0.00 41.50 4.85
780 945 5.584649 CGGGGTTATATACTATACGACGGAA 59.415 44.000 0.00 0.00 0.00 4.30
827 992 2.207177 GCACGCTTGCTTGTTTGTC 58.793 52.632 8.12 0.00 46.17 3.18
1020 1196 2.050934 GTACCGCTCCTCGTTCCCT 61.051 63.158 0.00 0.00 36.19 4.20
1024 1200 1.310933 ATGACGTACCGCTCCTCGTT 61.311 55.000 0.00 0.00 36.67 3.85
1247 1492 4.094590 CAGCTCCAAGAATCATCACTTGTC 59.905 45.833 0.00 0.00 40.98 3.18
1251 1504 4.452825 CATCAGCTCCAAGAATCATCACT 58.547 43.478 0.00 0.00 0.00 3.41
1275 1528 4.688419 CTGCACAAGCCAACGCCG 62.688 66.667 0.00 0.00 41.13 6.46
1284 1537 3.357079 GCGTCACCCCTGCACAAG 61.357 66.667 0.00 0.00 0.00 3.16
1613 1887 0.997196 GGTCGAACCGCTGTTATGAC 59.003 55.000 13.91 13.91 38.37 3.06
1688 1978 4.089923 GCAATAACACGCAGGAAAACATTC 59.910 41.667 0.00 0.00 0.00 2.67
1702 1992 4.530094 TTAGCATACGCAGCAATAACAC 57.470 40.909 0.00 0.00 42.27 3.32
1727 2025 1.067295 TGGAGCTGATGACCCACTTT 58.933 50.000 0.00 0.00 0.00 2.66
1728 2026 1.293062 ATGGAGCTGATGACCCACTT 58.707 50.000 0.00 0.00 0.00 3.16
1729 2027 1.765314 GTATGGAGCTGATGACCCACT 59.235 52.381 0.00 0.00 0.00 4.00
1730 2028 1.765314 AGTATGGAGCTGATGACCCAC 59.235 52.381 0.00 0.00 0.00 4.61
1731 2029 2.180946 AGTATGGAGCTGATGACCCA 57.819 50.000 0.00 0.00 0.00 4.51
1734 2032 4.764823 AGCTAGTAGTATGGAGCTGATGAC 59.235 45.833 0.00 0.00 43.53 3.06
1745 2043 5.470437 TCGATGAACTCCAGCTAGTAGTATG 59.530 44.000 0.00 0.00 0.00 2.39
1746 2044 5.622180 TCGATGAACTCCAGCTAGTAGTAT 58.378 41.667 0.00 0.00 0.00 2.12
1747 2045 5.032327 TCGATGAACTCCAGCTAGTAGTA 57.968 43.478 0.00 0.00 0.00 1.82
1748 2046 3.887352 TCGATGAACTCCAGCTAGTAGT 58.113 45.455 0.00 0.00 0.00 2.73
1749 2047 4.759693 AGATCGATGAACTCCAGCTAGTAG 59.240 45.833 0.54 0.00 0.00 2.57
1750 2048 4.720046 AGATCGATGAACTCCAGCTAGTA 58.280 43.478 0.54 0.00 0.00 1.82
1751 2049 3.561143 AGATCGATGAACTCCAGCTAGT 58.439 45.455 0.54 0.00 0.00 2.57
1752 2050 4.379394 GCTAGATCGATGAACTCCAGCTAG 60.379 50.000 0.54 5.17 0.00 3.42
1784 2110 2.192624 GCGCTGAAGAAGACTCTGATC 58.807 52.381 0.00 0.00 30.03 2.92
1785 2111 1.547820 TGCGCTGAAGAAGACTCTGAT 59.452 47.619 9.73 0.00 30.03 2.90
1786 2112 0.961753 TGCGCTGAAGAAGACTCTGA 59.038 50.000 9.73 0.00 30.03 3.27
1787 2113 1.788258 TTGCGCTGAAGAAGACTCTG 58.212 50.000 9.73 0.00 30.03 3.35
1788 2114 2.533266 TTTGCGCTGAAGAAGACTCT 57.467 45.000 9.73 0.00 0.00 3.24
1789 2115 3.820777 AATTTGCGCTGAAGAAGACTC 57.179 42.857 9.73 0.00 0.00 3.36
1790 2116 5.645497 AGATTAATTTGCGCTGAAGAAGACT 59.355 36.000 9.73 0.00 0.00 3.24
1791 2117 5.736358 CAGATTAATTTGCGCTGAAGAAGAC 59.264 40.000 9.73 0.00 0.00 3.01
1792 2118 5.643348 TCAGATTAATTTGCGCTGAAGAAGA 59.357 36.000 9.73 0.00 33.11 2.87
1800 2126 2.009774 ACGCTCAGATTAATTTGCGCT 58.990 42.857 16.18 4.09 46.03 5.92
1807 2133 5.482908 AGAAGAACACACGCTCAGATTAAT 58.517 37.500 0.00 0.00 0.00 1.40
1847 2173 4.640771 ATTTACACAAGAGGAAGCAGGA 57.359 40.909 0.00 0.00 0.00 3.86
1856 2182 8.886719 TGATGCAGAAGATTATTTACACAAGAG 58.113 33.333 0.00 0.00 0.00 2.85
1859 2185 7.121020 TGCTGATGCAGAAGATTATTTACACAA 59.879 33.333 2.69 0.00 45.31 3.33
1884 2214 4.260538 GCTCAGAAAAGGATGCGTCTAATG 60.261 45.833 5.77 0.00 0.00 1.90
2046 2423 5.862924 TCTTAAGAAAAGTCTCATTGCGG 57.137 39.130 1.68 0.00 30.70 5.69
2099 2476 2.113807 TCCAGAGAGTGACATGATGGG 58.886 52.381 0.00 0.00 0.00 4.00
2110 2487 3.655615 AGAATCTACGGTCCAGAGAGT 57.344 47.619 0.00 0.00 0.00 3.24
2176 2553 3.173151 TCTTTGCACATCTCTCCTGGTA 58.827 45.455 0.00 0.00 0.00 3.25
2201 2592 7.707893 GTGGATGAAAATGATTGATTTACAGGG 59.292 37.037 0.00 0.00 32.76 4.45
2240 2631 1.921243 AAGGCGCAACAAAGAAACAC 58.079 45.000 10.83 0.00 0.00 3.32
2272 2663 5.716979 AGAGTAGCCATTTGGATAGGAGTA 58.283 41.667 0.00 0.00 36.65 2.59
2307 2698 0.877071 AGGAATGAAGCGCAACACAG 59.123 50.000 11.47 0.00 0.00 3.66
2324 2715 2.713770 GCGCATGAGCATGACAGG 59.286 61.111 17.16 0.00 41.20 4.00
2365 2773 4.804108 CTGATCGCTAAGATTGGAGTAGG 58.196 47.826 0.00 0.00 40.26 3.18
2381 2789 1.126846 GTTGTTTCGGTGAGCTGATCG 59.873 52.381 0.00 0.00 0.00 3.69
2388 2796 5.411361 TGGAAAGATATGTTGTTTCGGTGAG 59.589 40.000 0.00 0.00 32.03 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.