Multiple sequence alignment - TraesCS7D01G381400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G381400 chr7D 100.000 6978 0 0 1 6978 495691673 495698650 0.000000e+00 12887.0
1 TraesCS7D01G381400 chr7D 84.337 498 40 22 2443 2931 495693604 495694072 2.970000e-123 453.0
2 TraesCS7D01G381400 chr7D 84.337 498 40 22 1932 2400 495694115 495694603 2.970000e-123 453.0
3 TraesCS7D01G381400 chr7D 90.826 218 6 5 5510 5713 495703629 495703846 5.330000e-71 279.0
4 TraesCS7D01G381400 chr7D 87.879 231 12 7 5510 5726 7942878 7942650 2.500000e-64 257.0
5 TraesCS7D01G381400 chr7D 87.179 234 8 8 5510 5729 7965469 7965244 5.410000e-61 246.0
6 TraesCS7D01G381400 chr7D 83.077 260 21 15 5510 5753 434903797 434904049 1.520000e-51 215.0
7 TraesCS7D01G381400 chr7B 91.605 3085 142 38 1 3007 524030754 524033799 0.000000e+00 4154.0
8 TraesCS7D01G381400 chr7B 96.024 2465 72 14 3049 5499 524033799 524036251 0.000000e+00 3986.0
9 TraesCS7D01G381400 chr7B 93.577 903 33 6 6095 6978 356739500 356740396 0.000000e+00 1323.0
10 TraesCS7D01G381400 chr7B 95.593 295 13 0 5755 6049 356739205 356739499 2.280000e-129 473.0
11 TraesCS7D01G381400 chr7B 84.538 498 39 21 1932 2400 524033236 524033724 6.380000e-125 459.0
12 TraesCS7D01G381400 chr7B 82.258 496 48 24 2443 2929 524032726 524033190 6.560000e-105 392.0
13 TraesCS7D01G381400 chr7B 94.771 153 8 0 4820 4972 353327115 353327267 9.050000e-59 239.0
14 TraesCS7D01G381400 chr7A 90.465 2496 132 31 1 2420 561577662 561580127 0.000000e+00 3193.0
15 TraesCS7D01G381400 chr7A 90.973 2149 106 40 3182 5311 561581034 561583113 0.000000e+00 2813.0
16 TraesCS7D01G381400 chr7A 89.620 395 31 6 2484 2874 561580159 561580547 1.750000e-135 494.0
17 TraesCS7D01G381400 chr7A 82.932 498 48 18 2443 2930 561579636 561580106 1.400000e-111 414.0
18 TraesCS7D01G381400 chr7A 84.085 377 27 18 1995 2341 561580174 561580547 4.030000e-87 333.0
19 TraesCS7D01G381400 chr7A 79.812 426 49 26 6046 6469 56016041 56016431 6.890000e-70 276.0
20 TraesCS7D01G381400 chr7A 83.955 268 30 6 2929 3186 561580673 561580937 1.940000e-60 244.0
21 TraesCS7D01G381400 chr7A 89.116 147 13 2 2305 2448 561580542 561580688 5.560000e-41 180.0
22 TraesCS7D01G381400 chr3A 85.973 663 52 14 3182 3843 616476023 616475401 0.000000e+00 671.0
23 TraesCS7D01G381400 chr3A 89.367 395 32 6 2484 2874 616477924 616477536 8.130000e-134 488.0
24 TraesCS7D01G381400 chr3A 81.028 506 41 32 1995 2448 616477909 616477407 1.110000e-92 351.0
25 TraesCS7D01G381400 chr3A 85.771 253 24 6 2943 3186 616476369 616476120 2.500000e-64 257.0
26 TraesCS7D01G381400 chr3A 94.805 154 8 0 4820 4973 455229382 455229229 2.520000e-59 241.0
27 TraesCS7D01G381400 chr3A 95.556 45 2 0 2890 2934 616477499 616477455 9.710000e-09 73.1
28 TraesCS7D01G381400 chr2B 85.938 640 74 4 5791 6430 186624534 186625157 0.000000e+00 669.0
29 TraesCS7D01G381400 chr2B 90.390 333 32 0 6552 6884 186651264 186651596 8.310000e-119 438.0
30 TraesCS7D01G381400 chr2B 93.846 65 4 0 6914 6978 175905341 175905277 1.600000e-16 99.0
31 TraesCS7D01G381400 chr6A 92.740 427 23 3 5710 6135 112547534 112547115 1.660000e-170 610.0
32 TraesCS7D01G381400 chr1A 93.773 273 10 2 5864 6135 498719926 498719660 3.030000e-108 403.0
33 TraesCS7D01G381400 chr1A 79.157 427 49 27 6046 6469 59850802 59851191 6.940000e-65 259.0
34 TraesCS7D01G381400 chrUn 93.333 195 12 1 6275 6469 91556346 91556539 3.190000e-73 287.0
35 TraesCS7D01G381400 chrUn 91.346 104 8 1 6320 6423 68459836 68459734 2.620000e-29 141.0
36 TraesCS7D01G381400 chr6B 89.270 233 9 5 5510 5726 2218764 2218996 1.920000e-70 278.0
37 TraesCS7D01G381400 chr6B 86.190 210 13 2 5521 5714 711883727 711883518 5.480000e-51 213.0
38 TraesCS7D01G381400 chr1B 75.566 618 95 40 5858 6472 24224507 24223943 3.230000e-63 254.0
39 TraesCS7D01G381400 chr1B 97.500 40 1 0 5674 5713 539649092 539649053 1.260000e-07 69.4
40 TraesCS7D01G381400 chr3B 94.118 153 9 0 4820 4972 449168132 449167980 4.210000e-57 233.0
41 TraesCS7D01G381400 chr3B 86.000 200 20 4 5024 5216 279961469 279961667 2.550000e-49 207.0
42 TraesCS7D01G381400 chr3B 92.188 64 5 0 6915 6978 764231034 764231097 2.680000e-14 91.6
43 TraesCS7D01G381400 chr6D 83.908 261 21 12 5510 5753 5419220 5418964 5.440000e-56 230.0
44 TraesCS7D01G381400 chr6D 86.538 208 14 2 5521 5714 466654888 466654681 4.240000e-52 217.0
45 TraesCS7D01G381400 chr2A 89.205 176 19 0 6803 6978 241082582 241082407 3.280000e-53 220.0
46 TraesCS7D01G381400 chr3D 91.558 154 13 0 4819 4972 9423571 9423724 5.480000e-51 213.0
47 TraesCS7D01G381400 chr3D 85.572 201 20 5 5024 5216 9423728 9423927 1.190000e-47 202.0
48 TraesCS7D01G381400 chr3D 96.875 64 2 0 6915 6978 477638910 477638847 2.660000e-19 108.0
49 TraesCS7D01G381400 chr1D 84.615 195 28 2 6786 6978 425679536 425679730 7.140000e-45 193.0
50 TraesCS7D01G381400 chr1D 94.118 119 7 0 5510 5628 408566163 408566045 1.550000e-41 182.0
51 TraesCS7D01G381400 chr1D 91.667 120 5 1 5510 5629 408558080 408557966 2.010000e-35 161.0
52 TraesCS7D01G381400 chr5A 94.175 103 6 0 4870 4972 85293640 85293538 2.610000e-34 158.0
53 TraesCS7D01G381400 chr2D 92.661 109 8 0 5521 5629 56064709 56064601 2.610000e-34 158.0
54 TraesCS7D01G381400 chr2D 81.726 197 23 9 5521 5713 55932394 55932207 1.210000e-32 152.0
55 TraesCS7D01G381400 chr2D 95.238 63 3 0 6916 6978 647118009 647118071 4.450000e-17 100.0
56 TraesCS7D01G381400 chr2D 100.000 53 0 0 5674 5726 56057984 56057932 1.600000e-16 99.0
57 TraesCS7D01G381400 chr2D 100.000 36 0 0 6943 6978 428009112 428009077 4.520000e-07 67.6
58 TraesCS7D01G381400 chr4D 96.364 55 2 0 6924 6978 10678901 10678955 2.680000e-14 91.6
59 TraesCS7D01G381400 chr4A 97.059 34 1 0 1484 1517 607309940 607309973 2.720000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G381400 chr7D 495691673 495698650 6977 False 12887.000000 12887 100.000000 1 6978 1 chr7D.!!$F2 6977
1 TraesCS7D01G381400 chr7D 495693604 495694603 999 False 453.000000 453 84.337000 1932 2931 2 chr7D.!!$F4 999
2 TraesCS7D01G381400 chr7B 524030754 524036251 5497 False 2247.750000 4154 88.606250 1 5499 4 chr7B.!!$F3 5498
3 TraesCS7D01G381400 chr7B 356739205 356740396 1191 False 898.000000 1323 94.585000 5755 6978 2 chr7B.!!$F2 1223
4 TraesCS7D01G381400 chr7A 561577662 561583113 5451 False 1095.857143 3193 87.306571 1 5311 7 chr7A.!!$F2 5310
5 TraesCS7D01G381400 chr3A 616475401 616477924 2523 True 368.020000 671 87.539000 1995 3843 5 chr3A.!!$R2 1848
6 TraesCS7D01G381400 chr2B 186624534 186625157 623 False 669.000000 669 85.938000 5791 6430 1 chr2B.!!$F1 639
7 TraesCS7D01G381400 chr1B 24223943 24224507 564 True 254.000000 254 75.566000 5858 6472 1 chr1B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 495 0.606604 AGCCCGTGATACAACGACTT 59.393 50.000 0.00 0.0 46.49 3.01 F
498 522 0.616371 ATTTGCCCACAGCTACCGTA 59.384 50.000 0.00 0.0 44.23 4.02 F
1219 1322 0.620700 AGTATCACCACCCTCCACCC 60.621 60.000 0.00 0.0 0.00 4.61 F
3107 4341 0.309302 TTGGTCATTCAAACCGTGCG 59.691 50.000 0.00 0.0 39.81 5.34 F
4048 5410 0.961019 TTGTTCTGATGCCCAGTTGC 59.039 50.000 3.57 0.0 43.38 4.17 F
5366 6744 2.279741 TGAAGCGAGCATCAATACCAC 58.720 47.619 0.17 0.0 33.17 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1281 1384 1.281656 GGATTAAATTCGGGCGCGG 59.718 57.895 23.74 4.77 0.00 6.46 R
1623 1730 1.282157 ACAGGGTACAATCTTGGAGGC 59.718 52.381 0.00 0.00 0.00 4.70 R
3167 4402 5.201713 TGCTAGTACATTAGCTAGGCTTG 57.798 43.478 13.50 0.00 44.99 4.01 R
4659 6026 2.454832 CTTGGACTCTGAGGCGGCAA 62.455 60.000 13.08 5.88 0.00 4.52 R
5426 6804 0.524862 CATGAAGACACCAAGCAGGC 59.475 55.000 0.00 0.00 43.14 4.85 R
6841 8251 1.122632 TGGACCACTGTTTCGGCCTA 61.123 55.000 0.00 0.00 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 5.452216 GCAAAAGGCACATATCATCCATGAA 60.452 40.000 0.00 0.00 43.97 2.57
103 105 0.902531 CTCGTGTGTCCAACCCCTAT 59.097 55.000 0.00 0.00 0.00 2.57
143 145 1.257743 CTCGACAAAGGAGGAGGACA 58.742 55.000 0.00 0.00 0.00 4.02
179 182 2.750637 AGGGCGACGACTGACGAT 60.751 61.111 0.00 0.00 45.77 3.73
218 221 2.103736 GCGTCGGCCACCTAGTAC 59.896 66.667 2.24 0.00 0.00 2.73
241 244 6.426587 ACTGTAGATAGCATGGGTTGAAAAT 58.573 36.000 0.00 0.00 0.00 1.82
286 289 3.585862 ACTAATTATAGTGATGCGGCGG 58.414 45.455 9.78 0.00 40.88 6.13
310 313 4.839668 TTTGTTCCCGGTGATAGTTTTG 57.160 40.909 0.00 0.00 0.00 2.44
375 389 7.970384 TCTCGTAATTTATCATGTTGGAACAC 58.030 34.615 0.00 0.00 42.51 3.32
377 391 6.369340 TCGTAATTTATCATGTTGGAACACGT 59.631 34.615 0.00 0.00 42.51 4.49
422 436 6.044682 CCCCTGCATTATCAAAGAAAATGAC 58.955 40.000 0.00 0.00 33.38 3.06
426 446 8.195436 CCTGCATTATCAAAGAAAATGACAGAT 58.805 33.333 14.53 0.00 37.16 2.90
427 447 9.582431 CTGCATTATCAAAGAAAATGACAGATT 57.418 29.630 10.47 0.00 37.16 2.40
428 448 9.932207 TGCATTATCAAAGAAAATGACAGATTT 57.068 25.926 0.00 0.00 33.38 2.17
467 487 3.963428 AAGATATGGAGCCCGTGATAC 57.037 47.619 0.00 0.00 0.00 2.24
475 495 0.606604 AGCCCGTGATACAACGACTT 59.393 50.000 0.00 0.00 46.49 3.01
492 512 2.558359 GACTTTGTATTTGCCCACAGCT 59.442 45.455 0.00 0.00 44.23 4.24
493 513 3.756434 GACTTTGTATTTGCCCACAGCTA 59.244 43.478 0.00 0.00 44.23 3.32
498 522 0.616371 ATTTGCCCACAGCTACCGTA 59.384 50.000 0.00 0.00 44.23 4.02
515 539 7.556635 AGCTACCGTAGTCTGCATATCAATATA 59.443 37.037 7.40 0.00 0.00 0.86
521 545 8.912658 CGTAGTCTGCATATCAATATAAAACGT 58.087 33.333 0.00 0.00 0.00 3.99
535 559 9.935682 CAATATAAAACGTGCTTCATAACTCAT 57.064 29.630 0.00 0.00 0.00 2.90
545 569 7.698130 CGTGCTTCATAACTCATATATCGATCA 59.302 37.037 0.00 0.00 0.00 2.92
581 605 2.420129 CCGCTAGAGTTGCCCTAATTGT 60.420 50.000 0.00 0.00 0.00 2.71
675 726 5.794894 ACATCCTAGTCGAACACAAAAGAT 58.205 37.500 0.00 0.00 0.00 2.40
703 754 3.766051 AGAAAAGAACCAATGGATCCAGC 59.234 43.478 21.33 5.13 0.00 4.85
816 873 0.695347 AAACCCTCCTCCAAGCTGAG 59.305 55.000 0.00 0.00 0.00 3.35
877 935 4.168871 CCCTAAAATCCCAATCCCTTCTCT 59.831 45.833 0.00 0.00 0.00 3.10
879 937 3.961484 AAATCCCAATCCCTTCTCTCC 57.039 47.619 0.00 0.00 0.00 3.71
880 938 2.594536 ATCCCAATCCCTTCTCTCCA 57.405 50.000 0.00 0.00 0.00 3.86
881 939 2.594536 TCCCAATCCCTTCTCTCCAT 57.405 50.000 0.00 0.00 0.00 3.41
980 1070 2.125912 CAACGACGGGCAGAGAGG 60.126 66.667 0.00 0.00 0.00 3.69
1089 1192 3.132139 CTCGTCCTCTTCGCCGGA 61.132 66.667 5.05 0.00 0.00 5.14
1209 1312 2.158564 CCCCTACGAGGTAGTATCACCA 60.159 54.545 0.00 0.00 41.40 4.17
1217 1320 1.761198 GGTAGTATCACCACCCTCCAC 59.239 57.143 0.00 0.00 38.55 4.02
1218 1321 1.761198 GTAGTATCACCACCCTCCACC 59.239 57.143 0.00 0.00 0.00 4.61
1219 1322 0.620700 AGTATCACCACCCTCCACCC 60.621 60.000 0.00 0.00 0.00 4.61
1220 1323 0.620700 GTATCACCACCCTCCACCCT 60.621 60.000 0.00 0.00 0.00 4.34
1221 1324 1.020462 TATCACCACCCTCCACCCTA 58.980 55.000 0.00 0.00 0.00 3.53
1222 1325 0.620700 ATCACCACCCTCCACCCTAC 60.621 60.000 0.00 0.00 0.00 3.18
1223 1326 2.124312 ACCACCCTCCACCCTACC 59.876 66.667 0.00 0.00 0.00 3.18
1228 1331 0.859057 ACCCTCCACCCTACCCTACT 60.859 60.000 0.00 0.00 0.00 2.57
1241 1344 4.040952 CCTACCCTACTCATTCCAATCCAG 59.959 50.000 0.00 0.00 0.00 3.86
1269 1372 1.002624 GTCCAATCCAGGGTTCGCA 60.003 57.895 0.00 0.00 0.00 5.10
1696 1803 8.545229 AATCTTTGCTCTGTGTATATATCTGC 57.455 34.615 0.00 0.00 0.00 4.26
1700 1807 5.776744 TGCTCTGTGTATATATCTGCTGTG 58.223 41.667 0.00 0.00 0.00 3.66
1720 1827 6.000891 TGTGAAGATGCTCATTTTGTGTAC 57.999 37.500 0.00 0.00 0.00 2.90
1769 1876 3.741476 GCCAACAAGCTCCAGCCG 61.741 66.667 0.00 0.00 43.38 5.52
1814 1921 2.565391 TGATAGTTTCTTGGGACAGCGA 59.435 45.455 0.00 0.00 42.39 4.93
3107 4341 0.309302 TTGGTCATTCAAACCGTGCG 59.691 50.000 0.00 0.00 39.81 5.34
3175 4410 3.609853 TGTTATGTTGAGCCAAGCCTAG 58.390 45.455 0.00 0.00 0.00 3.02
3293 4630 7.759489 AATACTTGTTCACTGCCTAATTTCA 57.241 32.000 0.00 0.00 0.00 2.69
3355 4712 9.486497 GCCAACGATATTCTCATGATCATATAT 57.514 33.333 8.15 8.04 0.00 0.86
3360 4717 9.339492 CGATATTCTCATGATCATATATCCACG 57.661 37.037 20.62 12.23 0.00 4.94
3361 4718 9.636879 GATATTCTCATGATCATATATCCACGG 57.363 37.037 17.97 2.48 0.00 4.94
3362 4719 7.666063 ATTCTCATGATCATATATCCACGGA 57.334 36.000 8.15 0.00 0.00 4.69
3363 4720 7.666063 TTCTCATGATCATATATCCACGGAT 57.334 36.000 8.15 3.62 38.54 4.18
3364 4721 7.282332 TCTCATGATCATATATCCACGGATC 57.718 40.000 8.15 0.00 36.17 3.36
3365 4722 7.065504 TCTCATGATCATATATCCACGGATCT 58.934 38.462 8.15 0.00 36.28 2.75
3366 4723 7.014038 TCTCATGATCATATATCCACGGATCTG 59.986 40.741 8.15 0.00 36.28 2.90
3367 4724 5.268118 TGATCATATATCCACGGATCTGC 57.732 43.478 0.73 0.00 36.28 4.26
3368 4725 4.958581 TGATCATATATCCACGGATCTGCT 59.041 41.667 0.73 0.00 36.28 4.24
3369 4726 4.991153 TCATATATCCACGGATCTGCTC 57.009 45.455 0.73 0.00 36.17 4.26
3370 4727 4.344104 TCATATATCCACGGATCTGCTCA 58.656 43.478 0.73 0.00 36.17 4.26
3371 4728 4.958581 TCATATATCCACGGATCTGCTCAT 59.041 41.667 0.73 0.00 36.17 2.90
3372 4729 6.129179 TCATATATCCACGGATCTGCTCATA 58.871 40.000 0.73 0.00 36.17 2.15
3373 4730 6.779539 TCATATATCCACGGATCTGCTCATAT 59.220 38.462 0.73 3.59 36.17 1.78
3374 4731 7.944554 TCATATATCCACGGATCTGCTCATATA 59.055 37.037 0.73 5.59 36.17 0.86
3386 4743 9.664332 GGATCTGCTCATATAATTTGTATGACT 57.336 33.333 10.71 0.00 34.53 3.41
3557 4915 6.150140 GTGAGAATTAAATGAGCAGACAAGGT 59.850 38.462 0.00 0.00 0.00 3.50
3578 4936 7.836479 AGGTGTCTGTTAGTAGTTTACTTCT 57.164 36.000 0.00 0.00 40.14 2.85
3675 5033 6.757010 ACTAATGTCCAGCAATTAGACTAACG 59.243 38.462 8.91 0.00 32.57 3.18
3979 5339 8.543774 ACTTTTGATCTCTAAGGTGTACATGAT 58.456 33.333 0.00 0.00 0.00 2.45
4048 5410 0.961019 TTGTTCTGATGCCCAGTTGC 59.039 50.000 3.57 0.00 43.38 4.17
4435 5798 6.745857 TGCATTCTATCCTATCAGGGAGATA 58.254 40.000 0.00 0.00 38.92 1.98
4513 5877 7.514721 TCTACAGTGAATTAACTTCCCTTTGT 58.485 34.615 0.00 0.00 32.49 2.83
4514 5878 8.653191 TCTACAGTGAATTAACTTCCCTTTGTA 58.347 33.333 0.00 0.00 32.49 2.41
4593 5960 6.042781 TGGATAGCGAAATAGGACCATAAAGT 59.957 38.462 0.00 0.00 0.00 2.66
4659 6026 5.362430 TGGTTCTGACCTTTTTGCTTGTAAT 59.638 36.000 0.00 0.00 46.66 1.89
5102 6469 4.935205 CCATCGTTCTCTGTGTGGAAAATA 59.065 41.667 0.00 0.00 0.00 1.40
5254 6632 3.901877 GGTTCAAAAATACCGTTCGTTCG 59.098 43.478 0.00 0.00 0.00 3.95
5366 6744 2.279741 TGAAGCGAGCATCAATACCAC 58.720 47.619 0.17 0.00 33.17 4.16
5377 6755 4.094887 GCATCAATACCACAAACGATCAGT 59.905 41.667 0.00 0.00 0.00 3.41
5381 6759 2.910688 ACCACAAACGATCAGTGACT 57.089 45.000 0.00 0.00 35.33 3.41
5387 6765 4.982295 CACAAACGATCAGTGACTCTTGTA 59.018 41.667 0.00 0.00 35.33 2.41
5391 6769 7.226720 ACAAACGATCAGTGACTCTTGTATTTT 59.773 33.333 0.00 0.00 29.83 1.82
5392 6770 6.952935 ACGATCAGTGACTCTTGTATTTTC 57.047 37.500 0.00 0.00 0.00 2.29
5393 6771 6.455647 ACGATCAGTGACTCTTGTATTTTCA 58.544 36.000 0.00 0.00 0.00 2.69
5394 6772 6.587990 ACGATCAGTGACTCTTGTATTTTCAG 59.412 38.462 0.00 0.00 0.00 3.02
5395 6773 6.454848 CGATCAGTGACTCTTGTATTTTCAGC 60.455 42.308 0.00 0.00 0.00 4.26
5465 6843 0.452784 GCGCTGGTTTCATGAACGAC 60.453 55.000 16.77 10.00 39.22 4.34
5467 6845 2.333926 CGCTGGTTTCATGAACGACTA 58.666 47.619 7.89 1.81 39.22 2.59
5478 6856 1.878088 TGAACGACTAGAGACGCTTGT 59.122 47.619 0.00 0.00 36.73 3.16
5479 6857 3.069289 TGAACGACTAGAGACGCTTGTA 58.931 45.455 0.00 0.00 36.73 2.41
5480 6858 3.688185 TGAACGACTAGAGACGCTTGTAT 59.312 43.478 0.00 0.00 36.73 2.29
5483 6863 5.056894 ACGACTAGAGACGCTTGTATTTT 57.943 39.130 0.00 0.00 36.73 1.82
5490 6870 3.146066 AGACGCTTGTATTTTCAGCCAA 58.854 40.909 0.00 0.00 0.00 4.52
5499 6879 8.811378 GCTTGTATTTTCAGCCAAGAATTAATC 58.189 33.333 0.00 0.00 37.14 1.75
5500 6880 8.909708 TTGTATTTTCAGCCAAGAATTAATCG 57.090 30.769 0.00 0.00 0.00 3.34
5501 6881 6.972328 TGTATTTTCAGCCAAGAATTAATCGC 59.028 34.615 0.00 0.00 0.00 4.58
5502 6882 5.643379 TTTTCAGCCAAGAATTAATCGCT 57.357 34.783 0.00 0.00 0.00 4.93
5503 6883 4.621068 TTCAGCCAAGAATTAATCGCTG 57.379 40.909 9.62 9.62 39.79 5.18
5504 6884 3.872696 TCAGCCAAGAATTAATCGCTGA 58.127 40.909 13.03 13.03 42.81 4.26
5505 6885 4.260985 TCAGCCAAGAATTAATCGCTGAA 58.739 39.130 14.14 2.92 42.40 3.02
5506 6886 4.883585 TCAGCCAAGAATTAATCGCTGAAT 59.116 37.500 14.14 0.00 42.40 2.57
5507 6887 6.054941 TCAGCCAAGAATTAATCGCTGAATA 58.945 36.000 14.14 0.00 42.40 1.75
5508 6888 6.017934 TCAGCCAAGAATTAATCGCTGAATAC 60.018 38.462 14.14 0.00 42.40 1.89
5509 6889 6.017605 CAGCCAAGAATTAATCGCTGAATACT 60.018 38.462 10.13 0.00 40.45 2.12
5510 6890 6.017605 AGCCAAGAATTAATCGCTGAATACTG 60.018 38.462 0.00 0.00 0.00 2.74
5511 6891 6.238484 GCCAAGAATTAATCGCTGAATACTGT 60.238 38.462 0.00 0.00 0.00 3.55
5512 6892 7.679638 GCCAAGAATTAATCGCTGAATACTGTT 60.680 37.037 0.00 0.00 0.00 3.16
5513 6893 8.826710 CCAAGAATTAATCGCTGAATACTGTTA 58.173 33.333 0.00 0.00 0.00 2.41
5514 6894 9.855361 CAAGAATTAATCGCTGAATACTGTTAG 57.145 33.333 0.00 0.00 0.00 2.34
5515 6895 8.594881 AGAATTAATCGCTGAATACTGTTAGG 57.405 34.615 0.00 0.00 0.00 2.69
5516 6896 8.421784 AGAATTAATCGCTGAATACTGTTAGGA 58.578 33.333 0.00 0.00 0.00 2.94
5517 6897 9.209175 GAATTAATCGCTGAATACTGTTAGGAT 57.791 33.333 0.00 0.00 0.00 3.24
5518 6898 9.561069 AATTAATCGCTGAATACTGTTAGGATT 57.439 29.630 0.00 0.00 0.00 3.01
5522 6902 9.561069 AATCGCTGAATACTGTTAGGATTAATT 57.439 29.630 0.00 0.00 0.00 1.40
5550 6930 7.689446 GGATTAATCCCTGCTTTATCTAACC 57.311 40.000 22.09 0.00 41.20 2.85
5551 6931 6.371825 GGATTAATCCCTGCTTTATCTAACCG 59.628 42.308 22.09 0.00 41.20 4.44
5552 6932 2.614829 TCCCTGCTTTATCTAACCGC 57.385 50.000 0.00 0.00 0.00 5.68
5553 6933 1.834896 TCCCTGCTTTATCTAACCGCA 59.165 47.619 0.00 0.00 0.00 5.69
5554 6934 2.158957 TCCCTGCTTTATCTAACCGCAG 60.159 50.000 0.00 0.00 45.60 5.18
5566 6946 2.049802 CCGCAGGCAGTTGCTTTG 60.050 61.111 3.88 4.71 46.14 2.77
5567 6947 2.049802 CGCAGGCAGTTGCTTTGG 60.050 61.111 3.88 0.00 41.90 3.28
5568 6948 2.356673 GCAGGCAGTTGCTTTGGC 60.357 61.111 3.88 1.96 40.89 4.52
5577 6957 2.721231 TGCTTTGGCAACTGTCGC 59.279 55.556 0.00 0.00 46.36 5.19
5578 6958 2.427410 GCTTTGGCAACTGTCGCG 60.427 61.111 0.00 0.00 38.54 5.87
5579 6959 3.022287 CTTTGGCAACTGTCGCGT 58.978 55.556 5.77 0.00 37.61 6.01
5580 6960 1.082756 CTTTGGCAACTGTCGCGTC 60.083 57.895 5.77 0.00 37.61 5.19
5581 6961 2.748546 CTTTGGCAACTGTCGCGTCG 62.749 60.000 5.77 0.00 37.61 5.12
5584 6964 3.335534 GCAACTGTCGCGTCGGTT 61.336 61.111 22.09 22.09 37.39 4.44
5585 6965 2.844146 CAACTGTCGCGTCGGTTC 59.156 61.111 24.36 3.03 35.10 3.62
5586 6966 2.728383 AACTGTCGCGTCGGTTCG 60.728 61.111 22.09 1.46 32.24 3.95
5594 6974 2.805353 CGTCGGTTCGCTGGACAG 60.805 66.667 0.00 0.00 0.00 3.51
5595 6975 2.432628 GTCGGTTCGCTGGACAGG 60.433 66.667 1.01 0.00 0.00 4.00
5596 6976 4.373116 TCGGTTCGCTGGACAGGC 62.373 66.667 1.01 0.00 0.00 4.85
5602 6982 3.753434 CGCTGGACAGGCGTCTCT 61.753 66.667 1.01 0.00 46.37 3.10
5603 6983 2.183046 GCTGGACAGGCGTCTCTC 59.817 66.667 1.01 0.00 42.21 3.20
5604 6984 2.347322 GCTGGACAGGCGTCTCTCT 61.347 63.158 1.01 0.00 42.21 3.10
5605 6985 1.806568 CTGGACAGGCGTCTCTCTC 59.193 63.158 0.00 0.00 42.21 3.20
5606 6986 0.679640 CTGGACAGGCGTCTCTCTCT 60.680 60.000 0.00 0.00 42.21 3.10
5607 6987 0.618981 TGGACAGGCGTCTCTCTCTA 59.381 55.000 0.00 0.00 42.21 2.43
5608 6988 1.018910 GGACAGGCGTCTCTCTCTAC 58.981 60.000 0.00 0.00 42.21 2.59
5609 6989 1.679336 GGACAGGCGTCTCTCTCTACA 60.679 57.143 0.00 0.00 42.21 2.74
5610 6990 1.668751 GACAGGCGTCTCTCTCTACAG 59.331 57.143 0.00 0.00 39.22 2.74
5611 6991 1.279558 ACAGGCGTCTCTCTCTACAGA 59.720 52.381 0.00 0.00 0.00 3.41
5612 6992 1.668751 CAGGCGTCTCTCTCTACAGAC 59.331 57.143 0.00 0.00 36.45 3.51
5613 6993 1.279558 AGGCGTCTCTCTCTACAGACA 59.720 52.381 0.00 0.00 39.29 3.41
5614 6994 1.399089 GGCGTCTCTCTCTACAGACAC 59.601 57.143 0.00 0.00 39.29 3.67
5615 6995 1.399089 GCGTCTCTCTCTACAGACACC 59.601 57.143 0.00 0.00 39.29 4.16
5616 6996 2.937873 GCGTCTCTCTCTACAGACACCT 60.938 54.545 0.00 0.00 39.29 4.00
5617 6997 2.933906 CGTCTCTCTCTACAGACACCTC 59.066 54.545 0.00 0.00 39.29 3.85
5618 6998 3.369052 CGTCTCTCTCTACAGACACCTCT 60.369 52.174 0.00 0.00 39.29 3.69
5619 6999 4.189231 GTCTCTCTCTACAGACACCTCTC 58.811 52.174 0.00 0.00 39.17 3.20
5620 7000 4.081087 GTCTCTCTCTACAGACACCTCTCT 60.081 50.000 0.00 0.00 39.17 3.10
5621 7001 5.128171 GTCTCTCTCTACAGACACCTCTCTA 59.872 48.000 0.00 0.00 39.17 2.43
5622 7002 5.362717 TCTCTCTCTACAGACACCTCTCTAG 59.637 48.000 0.00 0.00 0.00 2.43
5623 7003 5.027460 TCTCTCTACAGACACCTCTCTAGT 58.973 45.833 0.00 0.00 0.00 2.57
5624 7004 5.092554 TCTCTACAGACACCTCTCTAGTG 57.907 47.826 0.00 0.00 41.15 2.74
5625 7005 4.080807 TCTCTACAGACACCTCTCTAGTGG 60.081 50.000 0.00 0.00 39.63 4.00
5626 7006 1.551452 ACAGACACCTCTCTAGTGGC 58.449 55.000 0.00 0.00 44.05 5.01
5627 7007 1.203063 ACAGACACCTCTCTAGTGGCA 60.203 52.381 0.00 0.00 46.27 4.92
5628 7008 2.106566 CAGACACCTCTCTAGTGGCAT 58.893 52.381 0.00 0.00 46.27 4.40
5629 7009 3.291584 CAGACACCTCTCTAGTGGCATA 58.708 50.000 0.00 0.00 46.27 3.14
5630 7010 3.894427 CAGACACCTCTCTAGTGGCATAT 59.106 47.826 0.00 0.00 46.27 1.78
5631 7011 5.073428 CAGACACCTCTCTAGTGGCATATA 58.927 45.833 0.00 0.00 46.27 0.86
5632 7012 5.714333 CAGACACCTCTCTAGTGGCATATAT 59.286 44.000 0.00 0.00 46.27 0.86
5633 7013 6.887002 CAGACACCTCTCTAGTGGCATATATA 59.113 42.308 0.00 0.00 46.27 0.86
5634 7014 7.559533 CAGACACCTCTCTAGTGGCATATATAT 59.440 40.741 0.00 0.00 46.27 0.86
5635 7015 7.559533 AGACACCTCTCTAGTGGCATATATATG 59.440 40.741 17.01 17.01 46.27 1.78
5636 7016 7.185565 ACACCTCTCTAGTGGCATATATATGT 58.814 38.462 21.10 6.68 39.63 2.29
5637 7017 7.123397 ACACCTCTCTAGTGGCATATATATGTG 59.877 40.741 21.10 5.16 39.63 3.21
5638 7018 7.123397 CACCTCTCTAGTGGCATATATATGTGT 59.877 40.741 21.10 8.44 36.11 3.72
5639 7019 7.123397 ACCTCTCTAGTGGCATATATATGTGTG 59.877 40.741 21.10 8.52 36.11 3.82
5640 7020 7.340487 CCTCTCTAGTGGCATATATATGTGTGA 59.660 40.741 21.10 11.43 36.11 3.58
5641 7021 8.829373 TCTCTAGTGGCATATATATGTGTGAT 57.171 34.615 21.10 8.91 36.11 3.06
5642 7022 8.907885 TCTCTAGTGGCATATATATGTGTGATC 58.092 37.037 21.10 6.03 36.11 2.92
5643 7023 8.593945 TCTAGTGGCATATATATGTGTGATCA 57.406 34.615 21.10 0.00 36.11 2.92
5644 7024 8.470002 TCTAGTGGCATATATATGTGTGATCAC 58.530 37.037 19.27 19.27 44.08 3.06
5667 7047 9.647797 TCACATCATAATAAAGTAAACGACTGT 57.352 29.630 0.00 0.00 38.87 3.55
5679 7059 8.603242 AAGTAAACGACTGTTCATTTACATCT 57.397 30.769 17.34 6.04 41.04 2.90
5680 7060 8.240883 AGTAAACGACTGTTCATTTACATCTC 57.759 34.615 17.34 0.00 41.04 2.75
5681 7061 8.088981 AGTAAACGACTGTTCATTTACATCTCT 58.911 33.333 17.34 2.74 41.04 3.10
5682 7062 6.712241 AACGACTGTTCATTTACATCTCTG 57.288 37.500 0.00 0.00 30.83 3.35
5683 7063 5.784177 ACGACTGTTCATTTACATCTCTGT 58.216 37.500 0.00 0.00 39.49 3.41
5684 7064 5.635280 ACGACTGTTCATTTACATCTCTGTG 59.365 40.000 0.00 0.00 36.79 3.66
5685 7065 5.635280 CGACTGTTCATTTACATCTCTGTGT 59.365 40.000 0.00 0.00 36.79 3.72
5686 7066 6.183360 CGACTGTTCATTTACATCTCTGTGTC 60.183 42.308 0.00 0.00 36.79 3.67
5687 7067 6.763355 ACTGTTCATTTACATCTCTGTGTCT 58.237 36.000 0.00 0.00 36.79 3.41
5688 7068 7.896811 ACTGTTCATTTACATCTCTGTGTCTA 58.103 34.615 0.00 0.00 36.79 2.59
5689 7069 8.535335 ACTGTTCATTTACATCTCTGTGTCTAT 58.465 33.333 0.00 0.00 36.79 1.98
5690 7070 9.376075 CTGTTCATTTACATCTCTGTGTCTATT 57.624 33.333 0.00 0.00 36.79 1.73
5691 7071 9.371136 TGTTCATTTACATCTCTGTGTCTATTC 57.629 33.333 0.00 0.00 36.79 1.75
5692 7072 9.593134 GTTCATTTACATCTCTGTGTCTATTCT 57.407 33.333 0.00 0.00 36.79 2.40
5693 7073 9.809096 TTCATTTACATCTCTGTGTCTATTCTC 57.191 33.333 0.00 0.00 36.79 2.87
5694 7074 9.194972 TCATTTACATCTCTGTGTCTATTCTCT 57.805 33.333 0.00 0.00 36.79 3.10
5695 7075 9.814899 CATTTACATCTCTGTGTCTATTCTCTT 57.185 33.333 0.00 0.00 36.79 2.85
5696 7076 9.814899 ATTTACATCTCTGTGTCTATTCTCTTG 57.185 33.333 0.00 0.00 36.79 3.02
5697 7077 6.849085 ACATCTCTGTGTCTATTCTCTTGT 57.151 37.500 0.00 0.00 33.22 3.16
5698 7078 7.238486 ACATCTCTGTGTCTATTCTCTTGTT 57.762 36.000 0.00 0.00 33.22 2.83
5699 7079 7.319646 ACATCTCTGTGTCTATTCTCTTGTTC 58.680 38.462 0.00 0.00 33.22 3.18
5700 7080 7.178274 ACATCTCTGTGTCTATTCTCTTGTTCT 59.822 37.037 0.00 0.00 33.22 3.01
5701 7081 7.151999 TCTCTGTGTCTATTCTCTTGTTCTC 57.848 40.000 0.00 0.00 0.00 2.87
5702 7082 6.945435 TCTCTGTGTCTATTCTCTTGTTCTCT 59.055 38.462 0.00 0.00 0.00 3.10
5703 7083 8.103935 TCTCTGTGTCTATTCTCTTGTTCTCTA 58.896 37.037 0.00 0.00 0.00 2.43
5704 7084 8.637196 TCTGTGTCTATTCTCTTGTTCTCTAA 57.363 34.615 0.00 0.00 0.00 2.10
5705 7085 9.249053 TCTGTGTCTATTCTCTTGTTCTCTAAT 57.751 33.333 0.00 0.00 0.00 1.73
5706 7086 9.515020 CTGTGTCTATTCTCTTGTTCTCTAATC 57.485 37.037 0.00 0.00 0.00 1.75
5707 7087 9.025041 TGTGTCTATTCTCTTGTTCTCTAATCA 57.975 33.333 0.00 0.00 0.00 2.57
5708 7088 9.862371 GTGTCTATTCTCTTGTTCTCTAATCAA 57.138 33.333 0.00 0.00 0.00 2.57
5714 7094 7.408132 TCTCTTGTTCTCTAATCAAAACACG 57.592 36.000 0.00 0.00 31.76 4.49
5715 7095 6.984474 TCTCTTGTTCTCTAATCAAAACACGT 59.016 34.615 0.00 0.00 31.76 4.49
5716 7096 7.494625 TCTCTTGTTCTCTAATCAAAACACGTT 59.505 33.333 0.00 0.00 31.76 3.99
5717 7097 8.651391 TCTTGTTCTCTAATCAAAACACGTTA 57.349 30.769 0.00 0.00 31.76 3.18
5718 7098 9.268268 TCTTGTTCTCTAATCAAAACACGTTAT 57.732 29.630 0.00 0.00 31.76 1.89
5719 7099 9.530129 CTTGTTCTCTAATCAAAACACGTTATC 57.470 33.333 0.00 0.00 31.76 1.75
5720 7100 8.596271 TGTTCTCTAATCAAAACACGTTATCA 57.404 30.769 0.00 0.00 0.00 2.15
5721 7101 8.708742 TGTTCTCTAATCAAAACACGTTATCAG 58.291 33.333 0.00 0.00 0.00 2.90
5722 7102 7.290857 TCTCTAATCAAAACACGTTATCAGC 57.709 36.000 0.00 0.00 0.00 4.26
5723 7103 6.871492 TCTCTAATCAAAACACGTTATCAGCA 59.129 34.615 0.00 0.00 0.00 4.41
5724 7104 6.827641 TCTAATCAAAACACGTTATCAGCAC 58.172 36.000 0.00 0.00 0.00 4.40
5725 7105 3.513462 TCAAAACACGTTATCAGCACG 57.487 42.857 0.00 0.00 43.52 5.34
5726 7106 1.969256 CAAAACACGTTATCAGCACGC 59.031 47.619 0.00 0.00 41.53 5.34
5727 7107 1.508632 AAACACGTTATCAGCACGCT 58.491 45.000 0.00 0.00 41.53 5.07
5728 7108 1.068474 AACACGTTATCAGCACGCTC 58.932 50.000 0.00 0.00 41.53 5.03
5729 7109 0.736325 ACACGTTATCAGCACGCTCC 60.736 55.000 0.00 0.00 41.53 4.70
5730 7110 1.153628 ACGTTATCAGCACGCTCCC 60.154 57.895 0.00 0.00 41.53 4.30
5731 7111 1.883084 CGTTATCAGCACGCTCCCC 60.883 63.158 0.00 0.00 0.00 4.81
5732 7112 1.883084 GTTATCAGCACGCTCCCCG 60.883 63.158 0.00 0.00 44.21 5.73
5733 7113 3.088941 TTATCAGCACGCTCCCCGG 62.089 63.158 0.00 0.00 42.52 5.73
5752 7132 3.635204 GGAGCGATTCCATCTGCG 58.365 61.111 1.87 0.00 46.01 5.18
5753 7133 1.068083 GGAGCGATTCCATCTGCGA 59.932 57.895 1.87 0.00 46.01 5.10
5809 7189 3.381333 CTCCTGGCTGCAGCATCGA 62.381 63.158 37.63 26.13 44.36 3.59
6111 7502 4.314440 TCGCTGGACTGGTGGTGC 62.314 66.667 0.00 0.00 36.78 5.01
6163 7554 5.535043 TGAACAACGACATCATCAGATTG 57.465 39.130 0.00 0.00 30.20 2.67
6217 7608 2.593436 AACCACCGGTTTCGCCTG 60.593 61.111 2.97 0.00 44.33 4.85
6504 7913 2.586357 GGAAGACCGAGGCGATGC 60.586 66.667 0.00 0.00 0.00 3.91
6582 7991 2.252855 GATACGCCGCTCCTCTCG 59.747 66.667 0.00 0.00 0.00 4.04
6624 8034 4.069232 CAAGCTCTCCCGGCGACA 62.069 66.667 9.30 0.00 34.52 4.35
6725 8135 1.406065 CCTGACGAGGCCATGGAGAT 61.406 60.000 18.40 0.00 30.52 2.75
6813 8223 0.465460 TTCGCCTCTTTGCACCAAGT 60.465 50.000 0.00 0.00 0.00 3.16
6841 8251 2.163010 CAGTTGCAGGAATTCGCAGAAT 59.837 45.455 7.86 0.00 45.90 2.40
6851 8261 1.365699 TTCGCAGAATAGGCCGAAAC 58.634 50.000 0.00 0.00 45.90 2.78
6913 8323 2.364970 TGGAGTTTGTGAATTTGGCCTG 59.635 45.455 3.32 0.00 0.00 4.85
6964 8374 6.351966 GCCTGTCTTAGACCCTGTTAATTACT 60.352 42.308 10.10 0.00 0.00 2.24
6965 8375 7.042335 CCTGTCTTAGACCCTGTTAATTACTG 58.958 42.308 10.10 0.00 0.00 2.74
6967 8377 8.654485 TGTCTTAGACCCTGTTAATTACTGTA 57.346 34.615 10.10 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 33 1.525765 TGTGCGGCGCCATATTCAT 60.526 52.632 30.82 0.00 0.00 2.57
35 37 2.304901 TAGTGTGTGCGGCGCCATAT 62.305 55.000 30.82 16.95 0.00 1.78
103 105 2.544721 GAGATATCCTCCATCCAGGCA 58.455 52.381 0.00 0.00 35.87 4.75
130 132 3.197983 CCTAATCGTTGTCCTCCTCCTTT 59.802 47.826 0.00 0.00 0.00 3.11
143 145 2.688958 CCTCGTCCTTCTCCTAATCGTT 59.311 50.000 0.00 0.00 0.00 3.85
179 182 1.982395 CACTCCTAGGTGCCCGACA 60.982 63.158 9.08 0.00 0.00 4.35
218 221 6.319658 ACATTTTCAACCCATGCTATCTACAG 59.680 38.462 0.00 0.00 0.00 2.74
241 244 9.647797 AGTGACTATAAATGACATTTAACGACA 57.352 29.630 21.35 17.36 38.15 4.35
283 286 1.211709 CACCGGGAACAAAATCCGC 59.788 57.895 6.32 0.00 42.18 5.54
286 289 5.638596 AAACTATCACCGGGAACAAAATC 57.361 39.130 6.32 0.00 0.00 2.17
310 313 7.012044 ACCAAAATCCGCTTCATTACATACTAC 59.988 37.037 0.00 0.00 0.00 2.73
370 384 1.400494 AGCTCAACCAAACACGTGTTC 59.600 47.619 32.36 17.74 37.25 3.18
375 389 4.466828 CAGATTAAGCTCAACCAAACACG 58.533 43.478 0.00 0.00 0.00 4.49
377 391 3.255642 GGCAGATTAAGCTCAACCAAACA 59.744 43.478 0.00 0.00 0.00 2.83
433 453 9.651913 GGCTCCATATCTTTTTGTTTATTTGAA 57.348 29.630 0.00 0.00 0.00 2.69
467 487 3.243234 TGTGGGCAAATACAAAGTCGTTG 60.243 43.478 0.00 0.00 43.43 4.10
475 495 2.442413 GGTAGCTGTGGGCAAATACAA 58.558 47.619 0.00 0.00 44.79 2.41
493 513 9.204570 GTTTTATATTGATATGCAGACTACGGT 57.795 33.333 0.00 0.00 0.00 4.83
498 522 7.442364 AGCACGTTTTATATTGATATGCAGACT 59.558 33.333 0.00 0.00 0.00 3.24
515 539 8.487970 CGATATATGAGTTATGAAGCACGTTTT 58.512 33.333 0.00 0.00 0.00 2.43
521 545 9.741647 GATGATCGATATATGAGTTATGAAGCA 57.258 33.333 0.00 0.00 0.00 3.91
531 555 8.725148 TCGTCATATGGATGATCGATATATGAG 58.275 37.037 20.53 16.04 43.95 2.90
535 559 8.515414 GGATTCGTCATATGGATGATCGATATA 58.485 37.037 9.21 0.00 43.95 0.86
538 562 5.595885 GGATTCGTCATATGGATGATCGAT 58.404 41.667 0.00 0.00 43.95 3.59
540 564 3.793492 CGGATTCGTCATATGGATGATCG 59.207 47.826 2.13 0.00 43.95 3.69
545 569 4.017126 TCTAGCGGATTCGTCATATGGAT 58.983 43.478 2.13 0.00 38.89 3.41
626 654 5.698545 ACTAGCTCTCATTTGAGTGTTTGTC 59.301 40.000 7.42 0.00 42.60 3.18
627 655 5.468072 CACTAGCTCTCATTTGAGTGTTTGT 59.532 40.000 7.42 7.40 42.60 2.83
629 657 5.698545 GTCACTAGCTCTCATTTGAGTGTTT 59.301 40.000 7.42 2.02 42.60 2.83
632 660 4.814147 TGTCACTAGCTCTCATTTGAGTG 58.186 43.478 7.42 6.40 42.60 3.51
633 661 5.395103 GGATGTCACTAGCTCTCATTTGAGT 60.395 44.000 7.42 0.00 42.60 3.41
675 726 6.209391 GGATCCATTGGTTCTTTTCTTCTTCA 59.791 38.462 6.95 0.00 0.00 3.02
754 806 1.785041 TTCTGGTTGCTGTTGCGCTC 61.785 55.000 9.73 2.14 43.34 5.03
816 873 4.056125 GGCTTGGCGTGCCTTTCC 62.056 66.667 12.84 6.31 46.38 3.13
877 935 0.252513 TCGTTGAGGAAGGGGATGGA 60.253 55.000 0.00 0.00 0.00 3.41
879 937 1.739067 GTTCGTTGAGGAAGGGGATG 58.261 55.000 0.00 0.00 0.00 3.51
880 938 0.249398 CGTTCGTTGAGGAAGGGGAT 59.751 55.000 0.00 0.00 0.00 3.85
881 939 0.828762 TCGTTCGTTGAGGAAGGGGA 60.829 55.000 6.37 0.00 33.74 4.81
1209 1312 0.859057 AGTAGGGTAGGGTGGAGGGT 60.859 60.000 0.00 0.00 0.00 4.34
1217 1320 3.328050 GGATTGGAATGAGTAGGGTAGGG 59.672 52.174 0.00 0.00 0.00 3.53
1218 1321 3.973973 TGGATTGGAATGAGTAGGGTAGG 59.026 47.826 0.00 0.00 0.00 3.18
1219 1322 4.503991 GCTGGATTGGAATGAGTAGGGTAG 60.504 50.000 0.00 0.00 0.00 3.18
1220 1323 3.391296 GCTGGATTGGAATGAGTAGGGTA 59.609 47.826 0.00 0.00 0.00 3.69
1221 1324 2.173569 GCTGGATTGGAATGAGTAGGGT 59.826 50.000 0.00 0.00 0.00 4.34
1222 1325 2.487986 GGCTGGATTGGAATGAGTAGGG 60.488 54.545 0.00 0.00 0.00 3.53
1223 1326 2.487986 GGGCTGGATTGGAATGAGTAGG 60.488 54.545 0.00 0.00 0.00 3.18
1228 1331 2.669781 GATTGGGCTGGATTGGAATGA 58.330 47.619 0.00 0.00 0.00 2.57
1241 1344 0.033208 TGGATTGGACTGGATTGGGC 60.033 55.000 0.00 0.00 0.00 5.36
1281 1384 1.281656 GGATTAAATTCGGGCGCGG 59.718 57.895 23.74 4.77 0.00 6.46
1326 1433 2.100631 GGGGTTGATGACGTCGCAG 61.101 63.158 11.62 0.00 0.00 5.18
1623 1730 1.282157 ACAGGGTACAATCTTGGAGGC 59.718 52.381 0.00 0.00 0.00 4.70
1696 1803 5.117355 ACACAAAATGAGCATCTTCACAG 57.883 39.130 0.00 0.00 34.92 3.66
1700 1807 5.645497 AGAGGTACACAAAATGAGCATCTTC 59.355 40.000 0.00 0.00 34.92 2.87
1769 1876 2.989840 CTCGTCGATGAAGATAATGGCC 59.010 50.000 8.98 0.00 0.00 5.36
1814 1921 1.878102 GCTTCATGGTCTGTGTTCCGT 60.878 52.381 0.00 0.00 0.00 4.69
3007 4232 5.297547 TGTATTGGACTGAAGTCAAGACAC 58.702 41.667 12.32 4.26 46.47 3.67
3009 4234 5.934625 ACATGTATTGGACTGAAGTCAAGAC 59.065 40.000 12.32 11.32 46.47 3.01
3167 4402 5.201713 TGCTAGTACATTAGCTAGGCTTG 57.798 43.478 13.50 0.00 44.99 4.01
3175 4410 9.309516 TGTTGTATTTACTGCTAGTACATTAGC 57.690 33.333 7.09 7.09 44.97 3.09
3279 4616 8.723942 ACTAAGTAAGATGAAATTAGGCAGTG 57.276 34.615 0.00 0.00 0.00 3.66
3355 4712 5.745312 AATTATATGAGCAGATCCGTGGA 57.255 39.130 0.00 0.00 0.00 4.02
3356 4713 5.702670 ACAAATTATATGAGCAGATCCGTGG 59.297 40.000 0.00 0.00 0.00 4.94
3357 4714 6.791887 ACAAATTATATGAGCAGATCCGTG 57.208 37.500 0.00 0.00 0.00 4.94
3358 4715 8.314021 TCATACAAATTATATGAGCAGATCCGT 58.686 33.333 7.82 0.00 34.77 4.69
3359 4716 8.598924 GTCATACAAATTATATGAGCAGATCCG 58.401 37.037 10.99 0.00 39.22 4.18
3360 4717 9.664332 AGTCATACAAATTATATGAGCAGATCC 57.336 33.333 10.99 1.58 39.22 3.36
3365 4722 9.710900 CCAGTAGTCATACAAATTATATGAGCA 57.289 33.333 10.99 2.57 39.22 4.26
3366 4723 9.929180 TCCAGTAGTCATACAAATTATATGAGC 57.071 33.333 10.99 7.71 39.22 4.26
3557 4915 9.525409 GAACAAGAAGTAAACTACTAACAGACA 57.475 33.333 0.00 0.00 38.26 3.41
3592 4950 7.847711 ATGACTAGCAAGGACAAGTATATCT 57.152 36.000 0.00 0.00 0.00 1.98
3675 5033 2.870411 AGTGTCAGTTTTGCGTTAGGTC 59.130 45.455 0.00 0.00 0.00 3.85
3831 5189 3.773860 TTGCTAACCAATATTGCCGTG 57.226 42.857 10.11 0.00 0.00 4.94
4048 5410 6.446781 ACAAGCAAATCTCATGTGGATAAG 57.553 37.500 0.00 0.00 0.00 1.73
4435 5798 3.012518 CCCATCTTTCTCGCTGTTCAAT 58.987 45.455 0.00 0.00 0.00 2.57
4659 6026 2.454832 CTTGGACTCTGAGGCGGCAA 62.455 60.000 13.08 5.88 0.00 4.52
5366 6744 6.712241 AATACAAGAGTCACTGATCGTTTG 57.288 37.500 0.00 0.00 0.00 2.93
5395 6773 2.673862 CTGACAGATTCAGCAGCTCTTG 59.326 50.000 0.00 0.00 45.51 3.02
5426 6804 0.524862 CATGAAGACACCAAGCAGGC 59.475 55.000 0.00 0.00 43.14 4.85
5436 6814 0.537143 AAACCAGCGCCATGAAGACA 60.537 50.000 2.29 0.00 0.00 3.41
5465 6843 4.268884 GGCTGAAAATACAAGCGTCTCTAG 59.731 45.833 0.00 0.00 0.00 2.43
5467 6845 3.003480 GGCTGAAAATACAAGCGTCTCT 58.997 45.455 0.00 0.00 0.00 3.10
5478 6856 7.333528 AGCGATTAATTCTTGGCTGAAAATA 57.666 32.000 0.00 0.00 0.00 1.40
5479 6857 6.212888 AGCGATTAATTCTTGGCTGAAAAT 57.787 33.333 0.00 0.00 0.00 1.82
5480 6858 5.643379 AGCGATTAATTCTTGGCTGAAAA 57.357 34.783 0.00 0.00 0.00 2.29
5490 6870 8.421784 TCCTAACAGTATTCAGCGATTAATTCT 58.578 33.333 0.00 0.00 0.00 2.40
5526 6906 6.371825 CGGTTAGATAAAGCAGGGATTAATCC 59.628 42.308 24.14 24.14 39.68 3.01
5527 6907 6.128254 GCGGTTAGATAAAGCAGGGATTAATC 60.128 42.308 6.93 6.93 35.20 1.75
5528 6908 5.705905 GCGGTTAGATAAAGCAGGGATTAAT 59.294 40.000 0.00 0.00 35.20 1.40
5529 6909 5.061179 GCGGTTAGATAAAGCAGGGATTAA 58.939 41.667 0.00 0.00 35.20 1.40
5530 6910 4.101898 TGCGGTTAGATAAAGCAGGGATTA 59.898 41.667 0.00 0.00 35.20 1.75
5531 6911 3.118038 TGCGGTTAGATAAAGCAGGGATT 60.118 43.478 0.00 0.00 35.20 3.01
5532 6912 2.438021 TGCGGTTAGATAAAGCAGGGAT 59.562 45.455 0.00 0.00 35.20 3.85
5533 6913 1.834896 TGCGGTTAGATAAAGCAGGGA 59.165 47.619 0.00 0.00 35.20 4.20
5534 6914 2.325583 TGCGGTTAGATAAAGCAGGG 57.674 50.000 0.00 0.00 35.20 4.45
5537 6917 1.065782 TGCCTGCGGTTAGATAAAGCA 60.066 47.619 0.00 4.61 35.20 3.91
5538 6918 1.599542 CTGCCTGCGGTTAGATAAAGC 59.400 52.381 0.00 0.00 0.00 3.51
5539 6919 2.906354 ACTGCCTGCGGTTAGATAAAG 58.094 47.619 0.00 0.00 30.14 1.85
5540 6920 3.006940 CAACTGCCTGCGGTTAGATAAA 58.993 45.455 15.47 0.00 42.97 1.40
5541 6921 2.627945 CAACTGCCTGCGGTTAGATAA 58.372 47.619 15.47 0.00 42.97 1.75
5542 6922 1.742411 GCAACTGCCTGCGGTTAGATA 60.742 52.381 15.47 0.00 42.97 1.98
5543 6923 1.026718 GCAACTGCCTGCGGTTAGAT 61.027 55.000 15.47 0.00 42.97 1.98
5544 6924 1.671054 GCAACTGCCTGCGGTTAGA 60.671 57.895 15.47 0.00 42.97 2.10
5545 6925 2.870372 GCAACTGCCTGCGGTTAG 59.130 61.111 15.47 11.18 42.97 2.34
5551 6931 2.356673 GCCAAAGCAACTGCCTGC 60.357 61.111 0.00 0.00 43.38 4.85
5561 6941 2.427410 CGCGACAGTTGCCAAAGC 60.427 61.111 0.00 0.00 40.48 3.51
5562 6942 1.082756 GACGCGACAGTTGCCAAAG 60.083 57.895 15.93 0.00 0.00 2.77
5563 6943 2.876879 CGACGCGACAGTTGCCAAA 61.877 57.895 15.93 0.00 0.00 3.28
5564 6944 3.334751 CGACGCGACAGTTGCCAA 61.335 61.111 15.93 0.00 0.00 4.52
5567 6947 3.277742 GAACCGACGCGACAGTTGC 62.278 63.158 15.93 2.15 0.00 4.17
5568 6948 2.844146 GAACCGACGCGACAGTTG 59.156 61.111 15.93 0.00 0.00 3.16
5569 6949 2.728383 CGAACCGACGCGACAGTT 60.728 61.111 15.93 12.32 0.00 3.16
5577 6957 2.805353 CTGTCCAGCGAACCGACG 60.805 66.667 0.00 0.00 0.00 5.12
5578 6958 2.432628 CCTGTCCAGCGAACCGAC 60.433 66.667 0.00 0.00 0.00 4.79
5579 6959 4.373116 GCCTGTCCAGCGAACCGA 62.373 66.667 0.00 0.00 0.00 4.69
5586 6966 2.183046 GAGAGACGCCTGTCCAGC 59.817 66.667 0.00 0.00 46.74 4.85
5587 6967 0.679640 AGAGAGAGACGCCTGTCCAG 60.680 60.000 0.00 0.00 46.74 3.86
5588 6968 0.618981 TAGAGAGAGACGCCTGTCCA 59.381 55.000 0.00 0.00 46.74 4.02
5589 6969 1.018910 GTAGAGAGAGACGCCTGTCC 58.981 60.000 0.00 0.00 46.74 4.02
5590 6970 1.668751 CTGTAGAGAGAGACGCCTGTC 59.331 57.143 0.00 0.00 45.86 3.51
5591 6971 1.279558 TCTGTAGAGAGAGACGCCTGT 59.720 52.381 0.00 0.00 0.00 4.00
5592 6972 1.668751 GTCTGTAGAGAGAGACGCCTG 59.331 57.143 0.00 0.00 36.36 4.85
5593 6973 1.279558 TGTCTGTAGAGAGAGACGCCT 59.720 52.381 0.00 0.00 46.59 5.52
5594 6974 1.399089 GTGTCTGTAGAGAGAGACGCC 59.601 57.143 4.85 0.00 46.59 5.68
5595 6975 2.817538 GTGTCTGTAGAGAGAGACGC 57.182 55.000 0.00 0.00 46.59 5.19
5596 6976 2.933906 GAGGTGTCTGTAGAGAGAGACG 59.066 54.545 0.00 0.00 46.59 4.18
5597 6977 4.081087 AGAGAGGTGTCTGTAGAGAGAGAC 60.081 50.000 0.00 0.00 44.44 3.36
5598 6978 4.101114 AGAGAGGTGTCTGTAGAGAGAGA 58.899 47.826 0.00 0.00 30.97 3.10
5599 6979 4.487714 AGAGAGGTGTCTGTAGAGAGAG 57.512 50.000 0.00 0.00 30.97 3.20
5600 6980 5.027460 ACTAGAGAGGTGTCTGTAGAGAGA 58.973 45.833 12.22 0.00 45.58 3.10
5601 6981 5.116180 CACTAGAGAGGTGTCTGTAGAGAG 58.884 50.000 12.22 0.87 45.58 3.20
5602 6982 4.080807 CCACTAGAGAGGTGTCTGTAGAGA 60.081 50.000 12.22 0.00 45.58 3.10
5603 6983 4.196193 CCACTAGAGAGGTGTCTGTAGAG 58.804 52.174 12.22 5.59 45.58 2.43
5604 6984 3.622704 GCCACTAGAGAGGTGTCTGTAGA 60.623 52.174 12.22 0.00 45.58 2.59
5606 6986 2.041216 TGCCACTAGAGAGGTGTCTGTA 59.959 50.000 0.00 0.00 30.97 2.74
5607 6987 1.203063 TGCCACTAGAGAGGTGTCTGT 60.203 52.381 0.00 0.00 30.97 3.41
5608 6988 1.550327 TGCCACTAGAGAGGTGTCTG 58.450 55.000 0.00 0.00 30.97 3.51
5609 6989 2.541233 ATGCCACTAGAGAGGTGTCT 57.459 50.000 0.00 0.00 34.86 3.41
5610 6990 7.340743 ACATATATATGCCACTAGAGAGGTGTC 59.659 40.741 20.46 0.00 37.19 3.67
5611 6991 7.123397 CACATATATATGCCACTAGAGAGGTGT 59.877 40.741 20.46 0.00 37.19 4.16
5612 6992 7.123397 ACACATATATATGCCACTAGAGAGGTG 59.877 40.741 20.46 10.09 37.19 4.00
5613 6993 7.123397 CACACATATATATGCCACTAGAGAGGT 59.877 40.741 20.46 0.00 37.19 3.85
5614 6994 7.340487 TCACACATATATATGCCACTAGAGAGG 59.660 40.741 20.46 0.00 37.19 3.69
5615 6995 8.286191 TCACACATATATATGCCACTAGAGAG 57.714 38.462 20.46 3.33 37.19 3.20
5616 6996 8.829373 ATCACACATATATATGCCACTAGAGA 57.171 34.615 20.46 9.22 37.19 3.10
5617 6997 8.689972 TGATCACACATATATATGCCACTAGAG 58.310 37.037 20.46 4.90 37.19 2.43
5618 6998 8.470002 GTGATCACACATATATATGCCACTAGA 58.530 37.037 21.07 11.37 45.32 2.43
5619 6999 8.640091 GTGATCACACATATATATGCCACTAG 57.360 38.462 21.07 8.03 45.32 2.57
5641 7021 9.647797 ACAGTCGTTTACTTTATTATGATGTGA 57.352 29.630 0.00 0.00 35.76 3.58
5657 7037 7.870954 ACAGAGATGTAAATGAACAGTCGTTTA 59.129 33.333 0.00 0.00 41.99 2.01
5658 7038 6.706270 ACAGAGATGTAAATGAACAGTCGTTT 59.294 34.615 0.12 0.12 43.78 3.60
5659 7039 6.146184 CACAGAGATGTAAATGAACAGTCGTT 59.854 38.462 0.00 0.00 38.33 3.85
5660 7040 5.635280 CACAGAGATGTAAATGAACAGTCGT 59.365 40.000 0.00 0.00 31.70 4.34
5661 7041 5.635280 ACACAGAGATGTAAATGAACAGTCG 59.365 40.000 0.00 0.00 31.70 4.18
5662 7042 6.870965 AGACACAGAGATGTAAATGAACAGTC 59.129 38.462 0.00 0.00 31.24 3.51
5663 7043 6.763355 AGACACAGAGATGTAAATGAACAGT 58.237 36.000 0.00 0.00 31.24 3.55
5664 7044 8.939201 ATAGACACAGAGATGTAAATGAACAG 57.061 34.615 0.00 0.00 31.24 3.16
5665 7045 9.371136 GAATAGACACAGAGATGTAAATGAACA 57.629 33.333 0.00 0.00 31.24 3.18
5666 7046 9.593134 AGAATAGACACAGAGATGTAAATGAAC 57.407 33.333 0.00 0.00 31.24 3.18
5667 7047 9.809096 GAGAATAGACACAGAGATGTAAATGAA 57.191 33.333 0.00 0.00 31.24 2.57
5668 7048 9.194972 AGAGAATAGACACAGAGATGTAAATGA 57.805 33.333 0.00 0.00 31.24 2.57
5669 7049 9.814899 AAGAGAATAGACACAGAGATGTAAATG 57.185 33.333 0.00 0.00 31.24 2.32
5670 7050 9.814899 CAAGAGAATAGACACAGAGATGTAAAT 57.185 33.333 0.00 0.00 31.24 1.40
5671 7051 8.807118 ACAAGAGAATAGACACAGAGATGTAAA 58.193 33.333 0.00 0.00 31.24 2.01
5672 7052 8.354711 ACAAGAGAATAGACACAGAGATGTAA 57.645 34.615 0.00 0.00 31.24 2.41
5673 7053 7.946381 ACAAGAGAATAGACACAGAGATGTA 57.054 36.000 0.00 0.00 31.24 2.29
5674 7054 6.849085 ACAAGAGAATAGACACAGAGATGT 57.151 37.500 0.00 0.00 34.78 3.06
5675 7055 7.546358 AGAACAAGAGAATAGACACAGAGATG 58.454 38.462 0.00 0.00 0.00 2.90
5676 7056 7.615365 AGAGAACAAGAGAATAGACACAGAGAT 59.385 37.037 0.00 0.00 0.00 2.75
5677 7057 6.945435 AGAGAACAAGAGAATAGACACAGAGA 59.055 38.462 0.00 0.00 0.00 3.10
5678 7058 7.156876 AGAGAACAAGAGAATAGACACAGAG 57.843 40.000 0.00 0.00 0.00 3.35
5679 7059 8.637196 TTAGAGAACAAGAGAATAGACACAGA 57.363 34.615 0.00 0.00 0.00 3.41
5680 7060 9.515020 GATTAGAGAACAAGAGAATAGACACAG 57.485 37.037 0.00 0.00 0.00 3.66
5681 7061 9.025041 TGATTAGAGAACAAGAGAATAGACACA 57.975 33.333 0.00 0.00 0.00 3.72
5682 7062 9.862371 TTGATTAGAGAACAAGAGAATAGACAC 57.138 33.333 0.00 0.00 0.00 3.67
5688 7068 8.499162 CGTGTTTTGATTAGAGAACAAGAGAAT 58.501 33.333 0.00 0.00 34.76 2.40
5689 7069 7.494625 ACGTGTTTTGATTAGAGAACAAGAGAA 59.505 33.333 7.73 0.00 35.83 2.87
5690 7070 6.984474 ACGTGTTTTGATTAGAGAACAAGAGA 59.016 34.615 7.73 0.00 35.83 3.10
5691 7071 7.178712 ACGTGTTTTGATTAGAGAACAAGAG 57.821 36.000 7.73 0.00 35.83 2.85
5692 7072 7.548196 AACGTGTTTTGATTAGAGAACAAGA 57.452 32.000 7.73 0.00 35.83 3.02
5693 7073 9.530129 GATAACGTGTTTTGATTAGAGAACAAG 57.470 33.333 0.00 0.00 37.46 3.16
5694 7074 9.047371 TGATAACGTGTTTTGATTAGAGAACAA 57.953 29.630 0.00 0.00 34.20 2.83
5695 7075 8.596271 TGATAACGTGTTTTGATTAGAGAACA 57.404 30.769 0.00 0.00 0.00 3.18
5696 7076 7.688578 GCTGATAACGTGTTTTGATTAGAGAAC 59.311 37.037 0.00 0.00 0.00 3.01
5697 7077 7.386573 TGCTGATAACGTGTTTTGATTAGAGAA 59.613 33.333 0.00 0.00 0.00 2.87
5698 7078 6.871492 TGCTGATAACGTGTTTTGATTAGAGA 59.129 34.615 0.00 0.00 0.00 3.10
5699 7079 6.955963 GTGCTGATAACGTGTTTTGATTAGAG 59.044 38.462 0.00 0.00 0.00 2.43
5700 7080 6.400621 CGTGCTGATAACGTGTTTTGATTAGA 60.401 38.462 0.00 0.00 36.31 2.10
5701 7081 5.728049 CGTGCTGATAACGTGTTTTGATTAG 59.272 40.000 0.00 0.00 36.31 1.73
5702 7082 5.613812 CGTGCTGATAACGTGTTTTGATTA 58.386 37.500 0.00 0.00 36.31 1.75
5703 7083 4.463209 CGTGCTGATAACGTGTTTTGATT 58.537 39.130 0.00 0.00 36.31 2.57
5704 7084 3.666902 GCGTGCTGATAACGTGTTTTGAT 60.667 43.478 0.00 0.00 42.93 2.57
5705 7085 2.349060 GCGTGCTGATAACGTGTTTTGA 60.349 45.455 0.00 0.00 42.93 2.69
5706 7086 1.969256 GCGTGCTGATAACGTGTTTTG 59.031 47.619 0.00 0.00 42.93 2.44
5707 7087 1.871039 AGCGTGCTGATAACGTGTTTT 59.129 42.857 0.00 0.00 42.93 2.43
5708 7088 1.459592 GAGCGTGCTGATAACGTGTTT 59.540 47.619 0.00 0.00 42.93 2.83
5709 7089 1.068474 GAGCGTGCTGATAACGTGTT 58.932 50.000 0.00 0.00 42.93 3.32
5710 7090 0.736325 GGAGCGTGCTGATAACGTGT 60.736 55.000 0.00 0.00 42.93 4.49
5711 7091 1.421410 GGGAGCGTGCTGATAACGTG 61.421 60.000 0.00 0.00 42.93 4.49
5712 7092 1.153628 GGGAGCGTGCTGATAACGT 60.154 57.895 0.00 0.00 42.93 3.99
5713 7093 1.883084 GGGGAGCGTGCTGATAACG 60.883 63.158 0.00 0.00 43.81 3.18
5714 7094 1.883084 CGGGGAGCGTGCTGATAAC 60.883 63.158 0.00 0.00 0.00 1.89
5715 7095 2.499205 CGGGGAGCGTGCTGATAA 59.501 61.111 0.00 0.00 0.00 1.75
5716 7096 3.536917 CCGGGGAGCGTGCTGATA 61.537 66.667 0.00 0.00 0.00 2.15
5745 7125 2.279120 GGAGCCGTCTCGCAGATG 60.279 66.667 0.00 0.00 40.26 2.90
5746 7126 2.441164 AGGAGCCGTCTCGCAGAT 60.441 61.111 0.00 0.00 40.26 2.90
5747 7127 3.443925 CAGGAGCCGTCTCGCAGA 61.444 66.667 0.00 0.00 40.26 4.26
5748 7128 4.504916 CCAGGAGCCGTCTCGCAG 62.505 72.222 0.00 0.00 40.26 5.18
6721 8131 2.107953 GGCTGCTCCGGTCATCTC 59.892 66.667 0.00 0.00 0.00 2.75
6725 8135 4.020617 CAAGGGCTGCTCCGGTCA 62.021 66.667 0.00 0.00 34.94 4.02
6829 8239 1.865865 TCGGCCTATTCTGCGAATTC 58.134 50.000 0.00 0.00 0.00 2.17
6841 8251 1.122632 TGGACCACTGTTTCGGCCTA 61.123 55.000 0.00 0.00 0.00 3.93
6851 8261 2.758009 CAAAATTTGCCTGGACCACTG 58.242 47.619 0.00 0.00 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.