Multiple sequence alignment - TraesCS7D01G381200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G381200 chr7D 100.000 4368 0 0 1 4368 495342625 495338258 0.000000e+00 8067.0
1 TraesCS7D01G381200 chr7B 90.296 2164 112 31 1431 3579 523626334 523624254 0.000000e+00 2743.0
2 TraesCS7D01G381200 chr7B 90.843 688 32 11 713 1389 523627765 523627098 0.000000e+00 893.0
3 TraesCS7D01G381200 chr7B 94.141 256 9 4 491 742 523628036 523627783 6.850000e-103 385.0
4 TraesCS7D01G381200 chr7B 80.240 334 52 6 4046 4368 523622380 523622050 5.650000e-59 239.0
5 TraesCS7D01G381200 chr7B 87.135 171 17 2 3583 3752 734071632 734071466 5.770000e-44 189.0
6 TraesCS7D01G381200 chr7B 81.019 216 30 8 3579 3791 534043351 534043144 1.260000e-35 161.0
7 TraesCS7D01G381200 chr7B 95.745 47 1 1 650 695 233590919 233590873 1.680000e-09 75.0
8 TraesCS7D01G381200 chr7A 88.646 1920 98 45 674 2550 561177656 561175814 0.000000e+00 2228.0
9 TraesCS7D01G381200 chr7A 89.924 1052 63 24 2540 3584 561175630 561174615 0.000000e+00 1315.0
10 TraesCS7D01G381200 chr7A 94.135 682 28 11 1 675 561178433 561177757 0.000000e+00 1027.0
11 TraesCS7D01G381200 chr3A 88.166 169 16 3 3580 3748 16620384 16620548 9.580000e-47 198.0
12 TraesCS7D01G381200 chr3A 87.349 166 16 3 3583 3748 727233742 727233902 7.460000e-43 185.0
13 TraesCS7D01G381200 chr3D 87.059 170 17 3 3583 3751 87926161 87925996 2.070000e-43 187.0
14 TraesCS7D01G381200 chr6D 86.471 170 21 2 3580 3748 460870904 460871072 7.460000e-43 185.0
15 TraesCS7D01G381200 chr6B 86.391 169 19 3 3583 3751 16269829 16269665 9.650000e-42 182.0
16 TraesCS7D01G381200 chr6B 85.632 174 22 3 3576 3748 147089433 147089604 3.470000e-41 180.0
17 TraesCS7D01G381200 chr6B 91.837 49 4 0 650 698 460269079 460269127 7.840000e-08 69.4
18 TraesCS7D01G381200 chr4D 86.747 166 18 2 3583 3748 386984829 386984668 9.650000e-42 182.0
19 TraesCS7D01G381200 chr4A 95.833 48 2 0 650 697 647176556 647176603 1.300000e-10 78.7
20 TraesCS7D01G381200 chr5D 89.655 58 6 0 637 694 441890327 441890270 1.680000e-09 75.0
21 TraesCS7D01G381200 chr5D 88.525 61 7 0 631 691 441890735 441890795 1.680000e-09 75.0
22 TraesCS7D01G381200 chr5D 100.000 29 0 0 663 691 115999566 115999538 2.000000e-03 54.7
23 TraesCS7D01G381200 chr5A 92.500 40 0 3 663 700 589317024 589316986 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G381200 chr7D 495338258 495342625 4367 True 8067.000000 8067 100.000000 1 4368 1 chr7D.!!$R1 4367
1 TraesCS7D01G381200 chr7B 523622050 523628036 5986 True 1065.000000 2743 88.880000 491 4368 4 chr7B.!!$R4 3877
2 TraesCS7D01G381200 chr7A 561174615 561178433 3818 True 1523.333333 2228 90.901667 1 3584 3 chr7A.!!$R1 3583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
464 470 0.377203 GACGCAAATCCTAAAGCCCG 59.623 55.0 0.00 0.00 0.00 6.13 F
1450 2366 0.167470 GTTCGGCGGATATCGATCGA 59.833 55.0 21.86 21.86 42.43 3.59 F
2296 3234 0.179000 GTCCCAGCTCATCCGTCAAT 59.821 55.0 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 2686 0.036388 GAGGAGATGGTGAAACGGCA 60.036 55.000 0.00 0.00 38.12 5.69 R
3029 4163 1.006571 CCACGAAGTACCTGCACGT 60.007 57.895 0.00 0.00 41.61 4.49 R
4219 6971 0.030705 ATTCTCCCTAGCCTGGCTGA 60.031 55.000 30.83 18.16 40.10 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.912771 TGTTTGATCGTGTGGTGAACT 58.087 42.857 0.00 0.00 0.00 3.01
272 276 4.019771 TGTGCTACTGACCCATTTGATGTA 60.020 41.667 0.00 0.00 0.00 2.29
358 364 2.678336 GCACATCCCCTCGTTAGAAAAG 59.322 50.000 0.00 0.00 0.00 2.27
378 384 6.590234 AAAGAAAAATACACCCAGTCCATC 57.410 37.500 0.00 0.00 0.00 3.51
411 417 1.813513 ACTCGAAGGCCAACAATCAG 58.186 50.000 5.01 0.00 0.00 2.90
423 429 4.568760 GCCAACAATCAGGAAAACGAAAAA 59.431 37.500 0.00 0.00 0.00 1.94
432 438 9.462606 AATCAGGAAAACGAAAAAGTAGGATAT 57.537 29.630 0.00 0.00 0.00 1.63
464 470 0.377203 GACGCAAATCCTAAAGCCCG 59.623 55.000 0.00 0.00 0.00 6.13
648 656 5.449725 GCTTGAATCCACTGGCTAGAAATTC 60.450 44.000 3.17 9.92 0.00 2.17
661 672 6.100279 TGGCTAGAAATTCAGATGTGAGGTAT 59.900 38.462 0.00 0.00 32.98 2.73
718 880 6.202188 TGTTTGAATTAACCGAGACTTGAGAC 59.798 38.462 0.00 0.00 0.00 3.36
736 898 4.260170 GAGACAATTTGAGCTGACTCCAT 58.740 43.478 2.79 0.00 42.74 3.41
835 997 1.702957 TGACCCCAACCTACTTCCAAG 59.297 52.381 0.00 0.00 0.00 3.61
836 998 1.703513 GACCCCAACCTACTTCCAAGT 59.296 52.381 0.00 0.00 42.91 3.16
837 999 2.107726 GACCCCAACCTACTTCCAAGTT 59.892 50.000 0.00 0.00 40.37 2.66
838 1000 2.107726 ACCCCAACCTACTTCCAAGTTC 59.892 50.000 0.00 0.00 40.37 3.01
839 1001 2.554564 CCCCAACCTACTTCCAAGTTCC 60.555 54.545 0.00 0.00 40.37 3.62
840 1002 2.107552 CCCAACCTACTTCCAAGTTCCA 59.892 50.000 0.00 0.00 40.37 3.53
841 1003 3.435890 CCCAACCTACTTCCAAGTTCCAA 60.436 47.826 0.00 0.00 40.37 3.53
852 1014 4.913784 TCCAAGTTCCAACCATAAGTACC 58.086 43.478 0.00 0.00 0.00 3.34
853 1015 3.687698 CCAAGTTCCAACCATAAGTACCG 59.312 47.826 0.00 0.00 0.00 4.02
854 1016 4.563993 CCAAGTTCCAACCATAAGTACCGA 60.564 45.833 0.00 0.00 0.00 4.69
855 1017 5.183228 CAAGTTCCAACCATAAGTACCGAT 58.817 41.667 0.00 0.00 0.00 4.18
856 1018 5.019785 AGTTCCAACCATAAGTACCGATC 57.980 43.478 0.00 0.00 0.00 3.69
857 1019 4.124970 GTTCCAACCATAAGTACCGATCC 58.875 47.826 0.00 0.00 0.00 3.36
858 1020 2.701951 TCCAACCATAAGTACCGATCCC 59.298 50.000 0.00 0.00 0.00 3.85
878 1040 1.887707 GATCCCCGTCCAACGCATC 60.888 63.158 0.00 0.00 40.91 3.91
898 1060 1.614051 CCTTGCATAGAGCCAACCACA 60.614 52.381 0.00 0.00 44.83 4.17
902 1064 1.614317 GCATAGAGCCAACCACACCTT 60.614 52.381 0.00 0.00 37.23 3.50
903 1065 2.359900 CATAGAGCCAACCACACCTTC 58.640 52.381 0.00 0.00 0.00 3.46
904 1066 1.729586 TAGAGCCAACCACACCTTCT 58.270 50.000 0.00 0.00 0.00 2.85
905 1067 0.846693 AGAGCCAACCACACCTTCTT 59.153 50.000 0.00 0.00 0.00 2.52
906 1068 2.054799 AGAGCCAACCACACCTTCTTA 58.945 47.619 0.00 0.00 0.00 2.10
907 1069 2.441750 AGAGCCAACCACACCTTCTTAA 59.558 45.455 0.00 0.00 0.00 1.85
909 1071 1.265905 GCCAACCACACCTTCTTAACG 59.734 52.381 0.00 0.00 0.00 3.18
910 1072 2.567985 CCAACCACACCTTCTTAACGT 58.432 47.619 0.00 0.00 0.00 3.99
1329 1508 2.434884 CTGGCCACCAGCACTACG 60.435 66.667 0.00 0.00 45.13 3.51
1342 1521 5.579511 ACCAGCACTACGATTAATTACACAC 59.420 40.000 0.00 0.00 0.00 3.82
1343 1522 5.006358 CCAGCACTACGATTAATTACACACC 59.994 44.000 0.00 0.00 0.00 4.16
1344 1523 5.579119 CAGCACTACGATTAATTACACACCA 59.421 40.000 0.00 0.00 0.00 4.17
1345 1524 5.579511 AGCACTACGATTAATTACACACCAC 59.420 40.000 0.00 0.00 0.00 4.16
1346 1525 5.579511 GCACTACGATTAATTACACACCACT 59.420 40.000 0.00 0.00 0.00 4.00
1365 1545 3.741029 CGACACCATCGTTCTCCAT 57.259 52.632 0.00 0.00 46.25 3.41
1417 1597 2.224769 TGTGGGATTTCTTTCCGCTTCT 60.225 45.455 0.00 0.00 36.58 2.85
1450 2366 0.167470 GTTCGGCGGATATCGATCGA 59.833 55.000 21.86 21.86 42.43 3.59
1451 2367 1.092348 TTCGGCGGATATCGATCGAT 58.908 50.000 31.39 31.39 42.13 3.59
1574 2493 2.571757 CCAAGCACATGCAGCCAG 59.428 61.111 6.64 1.07 45.16 4.85
1628 2547 0.617413 AGCTTGCTGCACTGGAGTAT 59.383 50.000 0.00 0.00 45.94 2.12
1629 2548 1.833630 AGCTTGCTGCACTGGAGTATA 59.166 47.619 0.00 0.00 45.94 1.47
1630 2549 1.936547 GCTTGCTGCACTGGAGTATAC 59.063 52.381 0.00 0.00 42.31 1.47
1631 2550 2.419297 GCTTGCTGCACTGGAGTATACT 60.419 50.000 4.68 4.68 42.31 2.12
1632 2551 2.967599 TGCTGCACTGGAGTATACTG 57.032 50.000 10.90 0.00 0.00 2.74
1633 2552 2.179427 TGCTGCACTGGAGTATACTGT 58.821 47.619 10.90 0.00 0.00 3.55
1634 2553 3.361786 TGCTGCACTGGAGTATACTGTA 58.638 45.455 10.90 0.00 0.00 2.74
1635 2554 3.130516 TGCTGCACTGGAGTATACTGTAC 59.869 47.826 10.90 1.01 0.00 2.90
1636 2555 3.381908 GCTGCACTGGAGTATACTGTACT 59.618 47.826 10.90 0.00 0.00 2.73
1637 2556 4.734989 GCTGCACTGGAGTATACTGTACTG 60.735 50.000 10.90 7.07 0.00 2.74
1644 2563 6.782988 ACTGGAGTATACTGTACTGGCATTAT 59.217 38.462 10.90 0.00 0.00 1.28
1671 2590 1.962807 CCAGTCAAGGCCAACAAATGA 59.037 47.619 5.01 0.00 0.00 2.57
1672 2591 2.029649 CCAGTCAAGGCCAACAAATGAG 60.030 50.000 5.01 0.00 0.00 2.90
1673 2592 2.624838 CAGTCAAGGCCAACAAATGAGT 59.375 45.455 5.01 0.00 0.00 3.41
1674 2593 3.820467 CAGTCAAGGCCAACAAATGAGTA 59.180 43.478 5.01 0.00 0.00 2.59
1675 2594 3.821033 AGTCAAGGCCAACAAATGAGTAC 59.179 43.478 5.01 0.00 0.00 2.73
1676 2595 2.811431 TCAAGGCCAACAAATGAGTACG 59.189 45.455 5.01 0.00 0.00 3.67
1677 2596 2.552315 CAAGGCCAACAAATGAGTACGT 59.448 45.455 5.01 0.00 0.00 3.57
1678 2597 3.688694 AGGCCAACAAATGAGTACGTA 57.311 42.857 5.01 0.00 0.00 3.57
1685 2604 2.927477 ACAAATGAGTACGTACATGCCG 59.073 45.455 26.55 12.75 0.00 5.69
1692 2611 1.657094 GTACGTACATGCCGTTTCTGG 59.343 52.381 20.67 0.00 39.60 3.86
1767 2686 4.764823 TCCGTTTCATCAGTTAGGCAAAAT 59.235 37.500 0.00 0.00 0.00 1.82
1768 2687 4.858692 CCGTTTCATCAGTTAGGCAAAATG 59.141 41.667 0.00 0.00 34.46 2.32
1769 2688 4.324402 CGTTTCATCAGTTAGGCAAAATGC 59.676 41.667 0.00 0.00 44.08 3.56
1798 2731 3.134804 ACCATCTCCTCCTTATTTCCGTG 59.865 47.826 0.00 0.00 0.00 4.94
1986 2920 0.667184 CAAGGATGCCGCAACAAACC 60.667 55.000 0.00 0.00 0.00 3.27
1990 2924 0.313672 GATGCCGCAACAAACCAGAA 59.686 50.000 0.00 0.00 0.00 3.02
2039 2973 1.884926 CCAATTCGCTCGAGGCCTC 60.885 63.158 23.79 23.79 37.74 4.70
2103 3037 1.179152 TGGGCACGTCGATCTTTCTA 58.821 50.000 0.00 0.00 0.00 2.10
2104 3038 1.754803 TGGGCACGTCGATCTTTCTAT 59.245 47.619 0.00 0.00 0.00 1.98
2112 3046 4.181578 CGTCGATCTTTCTATTGGTGGTT 58.818 43.478 0.00 0.00 0.00 3.67
2113 3047 5.105635 ACGTCGATCTTTCTATTGGTGGTTA 60.106 40.000 0.00 0.00 0.00 2.85
2173 3110 3.181503 CCAGAAACGCATGAATCTTCAGG 60.182 47.826 0.00 0.41 41.08 3.86
2295 3233 0.904865 AGTCCCAGCTCATCCGTCAA 60.905 55.000 0.00 0.00 0.00 3.18
2296 3234 0.179000 GTCCCAGCTCATCCGTCAAT 59.821 55.000 0.00 0.00 0.00 2.57
2300 3238 0.933097 CAGCTCATCCGTCAATTCCG 59.067 55.000 0.00 0.00 0.00 4.30
2318 3256 4.308458 CGGTGGGGCAGACGTTGA 62.308 66.667 0.00 0.00 0.00 3.18
2409 3347 4.262036 CGGGATATATGTGGGATACGGATG 60.262 50.000 0.00 0.00 37.60 3.51
2487 3425 1.200839 GACGTGTCCGCTTGTTTCG 59.799 57.895 0.00 0.00 37.70 3.46
2488 3426 2.127758 CGTGTCCGCTTGTTTCGC 60.128 61.111 0.00 0.00 0.00 4.70
2489 3427 2.876879 CGTGTCCGCTTGTTTCGCA 61.877 57.895 0.00 0.00 0.00 5.10
2490 3428 1.574428 GTGTCCGCTTGTTTCGCAT 59.426 52.632 0.00 0.00 0.00 4.73
2491 3429 0.793861 GTGTCCGCTTGTTTCGCATA 59.206 50.000 0.00 0.00 0.00 3.14
2492 3430 1.396996 GTGTCCGCTTGTTTCGCATAT 59.603 47.619 0.00 0.00 0.00 1.78
2493 3431 2.605818 GTGTCCGCTTGTTTCGCATATA 59.394 45.455 0.00 0.00 0.00 0.86
2494 3432 2.863740 TGTCCGCTTGTTTCGCATATAG 59.136 45.455 0.00 0.00 0.00 1.31
2495 3433 2.221055 GTCCGCTTGTTTCGCATATAGG 59.779 50.000 0.00 0.00 0.00 2.57
2521 3459 5.341462 CAGAGTTCATGAAAATGAAACAGCG 59.659 40.000 10.35 0.00 41.61 5.18
2522 3460 5.239306 AGAGTTCATGAAAATGAAACAGCGA 59.761 36.000 10.35 0.00 41.61 4.93
2527 3465 3.951306 TGAAAATGAAACAGCGACAGTG 58.049 40.909 0.00 0.00 0.00 3.66
2537 3475 4.976224 ACAGCGACAGTGTACATATGTA 57.024 40.909 11.62 11.62 0.00 2.29
2559 3691 9.659830 ATGTAGTGTTTTTCTTTTGTCGATAAC 57.340 29.630 0.00 0.00 0.00 1.89
2575 3707 7.497595 TGTCGATAACAGGATTGCTTAATAGT 58.502 34.615 0.00 0.00 32.81 2.12
2586 3718 6.706716 GGATTGCTTAATAGTCTAGGTTGACC 59.293 42.308 0.00 0.00 37.66 4.02
2601 3733 5.990668 AGGTTGACCTGGCTTAATTAGTAG 58.009 41.667 0.97 0.00 46.55 2.57
2650 3782 5.182001 GGAAGTTCATCTTTCTTTGCTGCTA 59.818 40.000 5.01 0.00 36.40 3.49
2720 3852 5.998363 GGGAAACAGACATAGCTATTAAGGG 59.002 44.000 2.64 0.00 0.00 3.95
2752 3884 7.872483 ACAAAGGAATTTAAGCACGAAAATGAT 59.128 29.630 0.00 0.00 0.00 2.45
2755 3887 7.378181 AGGAATTTAAGCACGAAAATGATGTT 58.622 30.769 0.00 0.00 0.00 2.71
2757 3889 6.949578 ATTTAAGCACGAAAATGATGTTGG 57.050 33.333 0.00 0.00 0.00 3.77
2761 3893 2.030363 GCACGAAAATGATGTTGGTCCA 60.030 45.455 0.00 0.00 0.00 4.02
2773 3905 5.188751 TGATGTTGGTCCATGATACAGTACA 59.811 40.000 0.00 0.00 0.00 2.90
2778 3910 4.181578 GGTCCATGATACAGTACACACAC 58.818 47.826 0.00 0.00 0.00 3.82
2788 3920 4.371786 ACAGTACACACACTCAACATCAG 58.628 43.478 0.00 0.00 0.00 2.90
2791 3923 3.117491 ACACACACTCAACATCAGGAG 57.883 47.619 0.00 0.00 37.18 3.69
2908 4040 2.358247 CGGCGCTAACACTTGGGT 60.358 61.111 7.64 0.00 0.00 4.51
2929 4061 6.071560 TGGGTAGCGACATTCGATATATTCTT 60.072 38.462 0.00 0.00 42.86 2.52
2986 4120 6.601613 TGACCCATTGATCCAATGTTAACTAC 59.398 38.462 15.78 4.29 46.69 2.73
2987 4121 6.731467 ACCCATTGATCCAATGTTAACTACT 58.269 36.000 15.78 0.00 46.69 2.57
2988 4122 6.828785 ACCCATTGATCCAATGTTAACTACTC 59.171 38.462 15.78 0.00 46.69 2.59
2989 4123 7.056635 CCCATTGATCCAATGTTAACTACTCT 58.943 38.462 15.78 0.00 46.69 3.24
2990 4124 7.227512 CCCATTGATCCAATGTTAACTACTCTC 59.772 40.741 15.78 0.00 46.69 3.20
2991 4125 7.227512 CCATTGATCCAATGTTAACTACTCTCC 59.772 40.741 15.78 0.00 46.69 3.71
2992 4126 5.902681 TGATCCAATGTTAACTACTCTCCG 58.097 41.667 7.22 0.00 0.00 4.63
2993 4127 5.421056 TGATCCAATGTTAACTACTCTCCGT 59.579 40.000 7.22 0.00 0.00 4.69
2994 4128 5.320549 TCCAATGTTAACTACTCTCCGTC 57.679 43.478 7.22 0.00 0.00 4.79
2995 4129 4.159135 TCCAATGTTAACTACTCTCCGTCC 59.841 45.833 7.22 0.00 0.00 4.79
2996 4130 4.081862 CCAATGTTAACTACTCTCCGTCCA 60.082 45.833 7.22 0.00 0.00 4.02
2997 4131 5.475719 CAATGTTAACTACTCTCCGTCCAA 58.524 41.667 7.22 0.00 0.00 3.53
2998 4132 5.934402 ATGTTAACTACTCTCCGTCCAAT 57.066 39.130 7.22 0.00 0.00 3.16
2999 4133 7.262772 CAATGTTAACTACTCTCCGTCCAATA 58.737 38.462 7.22 0.00 0.00 1.90
3000 4134 6.839124 TGTTAACTACTCTCCGTCCAATAA 57.161 37.500 7.22 0.00 0.00 1.40
3001 4135 7.414222 TGTTAACTACTCTCCGTCCAATAAT 57.586 36.000 7.22 0.00 0.00 1.28
3002 4136 8.523915 TGTTAACTACTCTCCGTCCAATAATA 57.476 34.615 7.22 0.00 0.00 0.98
3003 4137 9.139734 TGTTAACTACTCTCCGTCCAATAATAT 57.860 33.333 7.22 0.00 0.00 1.28
3007 4141 9.584008 AACTACTCTCCGTCCAATAATATAAGA 57.416 33.333 0.00 0.00 0.00 2.10
3008 4142 9.584008 ACTACTCTCCGTCCAATAATATAAGAA 57.416 33.333 0.00 0.00 0.00 2.52
3009 4143 9.843334 CTACTCTCCGTCCAATAATATAAGAAC 57.157 37.037 0.00 0.00 0.00 3.01
3010 4144 8.480133 ACTCTCCGTCCAATAATATAAGAACT 57.520 34.615 0.00 0.00 0.00 3.01
3011 4145 9.584008 ACTCTCCGTCCAATAATATAAGAACTA 57.416 33.333 0.00 0.00 0.00 2.24
3199 4333 2.670148 GGAGTTCGGCATCCTGGGT 61.670 63.158 0.00 0.00 32.51 4.51
3293 4427 2.716244 CCGTCATCGTCTCCCTCG 59.284 66.667 0.00 0.00 35.01 4.63
3368 4502 6.100668 CACAAAAACTCCTCCTACTACTAGC 58.899 44.000 0.00 0.00 0.00 3.42
3369 4503 6.017830 ACAAAAACTCCTCCTACTACTAGCT 58.982 40.000 0.00 0.00 0.00 3.32
3370 4504 6.153170 ACAAAAACTCCTCCTACTACTAGCTC 59.847 42.308 0.00 0.00 0.00 4.09
3371 4505 5.453866 AAACTCCTCCTACTACTAGCTCA 57.546 43.478 0.00 0.00 0.00 4.26
3372 4506 4.699925 ACTCCTCCTACTACTAGCTCAG 57.300 50.000 0.00 0.00 0.00 3.35
3373 4507 3.181448 ACTCCTCCTACTACTAGCTCAGC 60.181 52.174 0.00 0.00 0.00 4.26
3374 4508 3.050089 TCCTCCTACTACTAGCTCAGCT 58.950 50.000 3.60 3.60 43.41 4.24
3375 4509 3.071892 TCCTCCTACTACTAGCTCAGCTC 59.928 52.174 0.00 0.00 40.44 4.09
3376 4510 3.181449 CCTCCTACTACTAGCTCAGCTCA 60.181 52.174 0.00 0.00 40.44 4.26
3377 4511 4.065088 CTCCTACTACTAGCTCAGCTCAG 58.935 52.174 0.00 1.28 40.44 3.35
3405 4539 2.816360 CTGACCCATCATGCACGCG 61.816 63.158 3.53 3.53 33.22 6.01
3450 4586 5.894298 TGCAGATGGTATACCTGATTTCT 57.106 39.130 22.41 12.97 36.82 2.52
3486 4622 3.497031 GGTCTTAGGCGCGTTGGC 61.497 66.667 8.36 3.22 45.27 4.52
3545 4681 6.435430 TTTGGCACTGTAATGTTAGCTATG 57.565 37.500 0.00 0.00 0.00 2.23
3588 4724 9.832445 GGATTTTACTTGGTATGATCTACTTCA 57.168 33.333 0.00 0.00 0.00 3.02
3594 4730 6.098409 ACTTGGTATGATCTACTTCATCCGTT 59.902 38.462 0.00 0.00 37.51 4.44
3596 4732 6.513180 TGGTATGATCTACTTCATCCGTTTC 58.487 40.000 0.00 0.00 37.51 2.78
3597 4733 6.323996 TGGTATGATCTACTTCATCCGTTTCT 59.676 38.462 0.00 0.00 37.51 2.52
3598 4734 7.504574 TGGTATGATCTACTTCATCCGTTTCTA 59.495 37.037 0.00 0.00 37.51 2.10
3599 4735 8.358148 GGTATGATCTACTTCATCCGTTTCTAA 58.642 37.037 0.00 0.00 37.51 2.10
3600 4736 9.745880 GTATGATCTACTTCATCCGTTTCTAAA 57.254 33.333 0.00 0.00 37.51 1.85
3678 4814 8.268850 AGACATGTTTTAGAATGTACATCCAC 57.731 34.615 9.23 4.34 37.15 4.02
3679 4815 8.103305 AGACATGTTTTAGAATGTACATCCACT 58.897 33.333 9.23 11.29 37.15 4.00
3680 4816 8.268850 ACATGTTTTAGAATGTACATCCACTC 57.731 34.615 9.23 2.88 35.28 3.51
3681 4817 7.882791 ACATGTTTTAGAATGTACATCCACTCA 59.117 33.333 9.23 4.07 35.28 3.41
3682 4818 8.896744 CATGTTTTAGAATGTACATCCACTCAT 58.103 33.333 9.23 6.06 0.00 2.90
3683 4819 8.862325 TGTTTTAGAATGTACATCCACTCATT 57.138 30.769 9.23 0.00 33.95 2.57
3684 4820 9.295825 TGTTTTAGAATGTACATCCACTCATTT 57.704 29.630 9.23 0.00 31.87 2.32
3687 4823 6.199937 AGAATGTACATCCACTCATTTTGC 57.800 37.500 9.23 0.00 31.87 3.68
3688 4824 5.948162 AGAATGTACATCCACTCATTTTGCT 59.052 36.000 9.23 0.00 31.87 3.91
3689 4825 5.824904 ATGTACATCCACTCATTTTGCTC 57.175 39.130 1.41 0.00 0.00 4.26
3690 4826 4.910195 TGTACATCCACTCATTTTGCTCT 58.090 39.130 0.00 0.00 0.00 4.09
3691 4827 6.048732 TGTACATCCACTCATTTTGCTCTA 57.951 37.500 0.00 0.00 0.00 2.43
3692 4828 6.653020 TGTACATCCACTCATTTTGCTCTAT 58.347 36.000 0.00 0.00 0.00 1.98
3693 4829 7.791029 TGTACATCCACTCATTTTGCTCTATA 58.209 34.615 0.00 0.00 0.00 1.31
3694 4830 8.432013 TGTACATCCACTCATTTTGCTCTATAT 58.568 33.333 0.00 0.00 0.00 0.86
3695 4831 7.741027 ACATCCACTCATTTTGCTCTATATG 57.259 36.000 0.00 0.00 0.00 1.78
3696 4832 7.285566 ACATCCACTCATTTTGCTCTATATGT 58.714 34.615 0.00 0.00 0.00 2.29
3697 4833 8.432013 ACATCCACTCATTTTGCTCTATATGTA 58.568 33.333 0.00 0.00 0.00 2.29
3698 4834 8.933807 CATCCACTCATTTTGCTCTATATGTAG 58.066 37.037 0.00 0.00 0.00 2.74
3699 4835 8.023021 TCCACTCATTTTGCTCTATATGTAGT 57.977 34.615 0.00 0.00 0.00 2.73
3700 4836 8.144478 TCCACTCATTTTGCTCTATATGTAGTC 58.856 37.037 0.00 0.00 0.00 2.59
3701 4837 7.386299 CCACTCATTTTGCTCTATATGTAGTCC 59.614 40.741 0.00 0.00 0.00 3.85
3702 4838 7.386299 CACTCATTTTGCTCTATATGTAGTCCC 59.614 40.741 0.00 0.00 0.00 4.46
3703 4839 7.071196 ACTCATTTTGCTCTATATGTAGTCCCA 59.929 37.037 0.00 0.00 0.00 4.37
3704 4840 7.801104 TCATTTTGCTCTATATGTAGTCCCAA 58.199 34.615 0.00 0.00 0.00 4.12
3705 4841 8.439971 TCATTTTGCTCTATATGTAGTCCCAAT 58.560 33.333 0.00 0.00 0.00 3.16
3706 4842 9.071276 CATTTTGCTCTATATGTAGTCCCAATT 57.929 33.333 0.00 0.00 0.00 2.32
3707 4843 8.450578 TTTTGCTCTATATGTAGTCCCAATTG 57.549 34.615 0.00 0.00 0.00 2.32
3708 4844 6.994421 TGCTCTATATGTAGTCCCAATTGA 57.006 37.500 7.12 0.00 0.00 2.57
3709 4845 7.373617 TGCTCTATATGTAGTCCCAATTGAA 57.626 36.000 7.12 0.00 0.00 2.69
3710 4846 7.801104 TGCTCTATATGTAGTCCCAATTGAAA 58.199 34.615 7.12 0.00 0.00 2.69
3711 4847 8.439971 TGCTCTATATGTAGTCCCAATTGAAAT 58.560 33.333 7.12 0.00 0.00 2.17
3712 4848 8.940952 GCTCTATATGTAGTCCCAATTGAAATC 58.059 37.037 7.12 0.00 0.00 2.17
3719 4855 9.753674 ATGTAGTCCCAATTGAAATCTCTAAAA 57.246 29.630 7.12 0.00 0.00 1.52
3720 4856 9.581289 TGTAGTCCCAATTGAAATCTCTAAAAA 57.419 29.630 7.12 0.00 0.00 1.94
3722 4858 8.940397 AGTCCCAATTGAAATCTCTAAAAAGA 57.060 30.769 7.12 0.00 0.00 2.52
3723 4859 8.797438 AGTCCCAATTGAAATCTCTAAAAAGAC 58.203 33.333 7.12 0.00 0.00 3.01
3724 4860 8.797438 GTCCCAATTGAAATCTCTAAAAAGACT 58.203 33.333 7.12 0.00 0.00 3.24
3725 4861 9.367160 TCCCAATTGAAATCTCTAAAAAGACTT 57.633 29.630 7.12 0.00 0.00 3.01
3743 4879 8.904099 AAAGACTTATATTTATGAACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
3744 4880 7.850935 AGACTTATATTTATGAACGGAGGGA 57.149 36.000 0.00 0.00 0.00 4.20
3745 4881 7.897864 AGACTTATATTTATGAACGGAGGGAG 58.102 38.462 0.00 0.00 0.00 4.30
3746 4882 7.509659 AGACTTATATTTATGAACGGAGGGAGT 59.490 37.037 0.00 0.00 0.00 3.85
3747 4883 8.716674 ACTTATATTTATGAACGGAGGGAGTA 57.283 34.615 0.00 0.00 0.00 2.59
3748 4884 9.151177 ACTTATATTTATGAACGGAGGGAGTAA 57.849 33.333 0.00 0.00 0.00 2.24
3753 4889 7.850935 TTTATGAACGGAGGGAGTAATATCT 57.149 36.000 0.00 0.00 0.00 1.98
3754 4890 8.945195 TTTATGAACGGAGGGAGTAATATCTA 57.055 34.615 0.00 0.00 0.00 1.98
3755 4891 6.837471 ATGAACGGAGGGAGTAATATCTAC 57.163 41.667 0.00 0.00 0.00 2.59
3756 4892 4.758674 TGAACGGAGGGAGTAATATCTACG 59.241 45.833 0.00 0.00 39.28 3.51
3757 4893 3.683802 ACGGAGGGAGTAATATCTACGG 58.316 50.000 0.00 0.00 37.84 4.02
3764 4900 7.229581 AGGGAGTAATATCTACGGTGATTTC 57.770 40.000 0.00 0.00 0.00 2.17
3780 4916 5.853282 GGTGATTTCGCATGAACTAATATGC 59.147 40.000 0.00 0.00 44.67 3.14
3818 4954 8.416329 ACTTTTTGAGCTGATTTAGTTCATTGT 58.584 29.630 0.00 0.00 44.62 2.71
3828 4964 6.429692 TGATTTAGTTCATTGTACCTGTGGTG 59.570 38.462 0.00 0.00 36.19 4.17
3841 4977 0.473755 TGTGGTGTGAGAATGGCACT 59.526 50.000 0.00 0.00 37.18 4.40
3842 4978 1.133823 TGTGGTGTGAGAATGGCACTT 60.134 47.619 0.00 0.00 37.18 3.16
3850 4986 2.053627 GAGAATGGCACTTTTGTTGCG 58.946 47.619 0.00 0.00 0.00 4.85
3876 5012 5.709164 CCATCCATTTCTCCAATAGGATGAC 59.291 44.000 18.08 0.00 44.06 3.06
3877 5013 4.960938 TCCATTTCTCCAATAGGATGACG 58.039 43.478 0.00 0.00 44.70 4.35
3917 5055 7.899178 ATATGTTGACATGTTTCGTAGTTGA 57.101 32.000 0.00 0.00 37.15 3.18
3918 5056 6.801539 ATGTTGACATGTTTCGTAGTTGAT 57.198 33.333 0.00 0.00 34.83 2.57
3919 5057 6.612247 TGTTGACATGTTTCGTAGTTGATT 57.388 33.333 0.00 0.00 0.00 2.57
3920 5058 7.022055 TGTTGACATGTTTCGTAGTTGATTT 57.978 32.000 0.00 0.00 0.00 2.17
3921 5059 7.476667 TGTTGACATGTTTCGTAGTTGATTTT 58.523 30.769 0.00 0.00 0.00 1.82
3922 5060 7.642194 TGTTGACATGTTTCGTAGTTGATTTTC 59.358 33.333 0.00 0.00 0.00 2.29
3923 5061 7.252965 TGACATGTTTCGTAGTTGATTTTCA 57.747 32.000 0.00 0.00 0.00 2.69
3924 5062 7.870826 TGACATGTTTCGTAGTTGATTTTCAT 58.129 30.769 0.00 0.00 0.00 2.57
3925 5063 8.994170 TGACATGTTTCGTAGTTGATTTTCATA 58.006 29.630 0.00 0.00 0.00 2.15
3926 5064 9.820229 GACATGTTTCGTAGTTGATTTTCATAA 57.180 29.630 0.00 0.00 0.00 1.90
3927 5065 9.607285 ACATGTTTCGTAGTTGATTTTCATAAC 57.393 29.630 0.00 0.00 0.00 1.89
3928 5066 9.825972 CATGTTTCGTAGTTGATTTTCATAACT 57.174 29.630 0.00 0.00 38.19 2.24
3944 5082 8.561738 TTTCATAACTAATCTTGAACCTGACC 57.438 34.615 0.00 0.00 0.00 4.02
3945 5083 7.496346 TCATAACTAATCTTGAACCTGACCT 57.504 36.000 0.00 0.00 0.00 3.85
3946 5084 7.556844 TCATAACTAATCTTGAACCTGACCTC 58.443 38.462 0.00 0.00 0.00 3.85
3947 5085 4.828072 ACTAATCTTGAACCTGACCTCC 57.172 45.455 0.00 0.00 0.00 4.30
3948 5086 4.168101 ACTAATCTTGAACCTGACCTCCA 58.832 43.478 0.00 0.00 0.00 3.86
3949 5087 3.425162 AATCTTGAACCTGACCTCCAC 57.575 47.619 0.00 0.00 0.00 4.02
3950 5088 1.801242 TCTTGAACCTGACCTCCACA 58.199 50.000 0.00 0.00 0.00 4.17
3951 5089 2.338809 TCTTGAACCTGACCTCCACAT 58.661 47.619 0.00 0.00 0.00 3.21
3952 5090 2.303022 TCTTGAACCTGACCTCCACATC 59.697 50.000 0.00 0.00 0.00 3.06
3953 5091 1.728323 TGAACCTGACCTCCACATCA 58.272 50.000 0.00 0.00 0.00 3.07
3954 5092 1.347707 TGAACCTGACCTCCACATCAC 59.652 52.381 0.00 0.00 0.00 3.06
3955 5093 1.347707 GAACCTGACCTCCACATCACA 59.652 52.381 0.00 0.00 0.00 3.58
3956 5094 1.434188 ACCTGACCTCCACATCACAA 58.566 50.000 0.00 0.00 0.00 3.33
3957 5095 1.988107 ACCTGACCTCCACATCACAAT 59.012 47.619 0.00 0.00 0.00 2.71
3958 5096 2.026822 ACCTGACCTCCACATCACAATC 60.027 50.000 0.00 0.00 0.00 2.67
3959 5097 2.238144 CCTGACCTCCACATCACAATCT 59.762 50.000 0.00 0.00 0.00 2.40
3960 5098 3.452264 CCTGACCTCCACATCACAATCTA 59.548 47.826 0.00 0.00 0.00 1.98
3961 5099 4.080919 CCTGACCTCCACATCACAATCTAA 60.081 45.833 0.00 0.00 0.00 2.10
3962 5100 5.089970 TGACCTCCACATCACAATCTAAG 57.910 43.478 0.00 0.00 0.00 2.18
3963 5101 4.080919 TGACCTCCACATCACAATCTAAGG 60.081 45.833 0.00 0.00 0.00 2.69
3964 5102 4.104086 ACCTCCACATCACAATCTAAGGA 58.896 43.478 0.00 0.00 0.00 3.36
3965 5103 4.723789 ACCTCCACATCACAATCTAAGGAT 59.276 41.667 0.00 0.00 0.00 3.24
3966 5104 5.905331 ACCTCCACATCACAATCTAAGGATA 59.095 40.000 0.00 0.00 0.00 2.59
3967 5105 6.560304 ACCTCCACATCACAATCTAAGGATAT 59.440 38.462 0.00 0.00 0.00 1.63
3968 5106 7.072961 ACCTCCACATCACAATCTAAGGATATT 59.927 37.037 0.00 0.00 0.00 1.28
3969 5107 7.941238 CCTCCACATCACAATCTAAGGATATTT 59.059 37.037 0.00 0.00 0.00 1.40
3970 5108 8.681486 TCCACATCACAATCTAAGGATATTTG 57.319 34.615 0.00 0.00 0.00 2.32
3971 5109 7.720957 TCCACATCACAATCTAAGGATATTTGG 59.279 37.037 0.00 0.00 0.00 3.28
3972 5110 7.040201 CCACATCACAATCTAAGGATATTTGGG 60.040 40.741 0.00 0.00 0.00 4.12
3973 5111 6.491403 ACATCACAATCTAAGGATATTTGGGC 59.509 38.462 0.00 0.00 0.00 5.36
3974 5112 5.385198 TCACAATCTAAGGATATTTGGGCC 58.615 41.667 0.00 0.00 0.00 5.80
3975 5113 5.103728 TCACAATCTAAGGATATTTGGGCCA 60.104 40.000 0.00 0.00 0.00 5.36
3976 5114 5.010012 CACAATCTAAGGATATTTGGGCCAC 59.990 44.000 5.23 0.00 0.00 5.01
3977 5115 3.876309 TCTAAGGATATTTGGGCCACC 57.124 47.619 5.23 3.23 37.24 4.61
3978 5116 2.445525 TCTAAGGATATTTGGGCCACCC 59.554 50.000 5.23 2.61 45.71 4.61
3999 5137 2.159627 CGATTTCTTCCCCAACTCAACG 59.840 50.000 0.00 0.00 0.00 4.10
4010 5148 3.815401 CCCAACTCAACGAAAACTCATCT 59.185 43.478 0.00 0.00 0.00 2.90
4011 5149 4.319766 CCCAACTCAACGAAAACTCATCTG 60.320 45.833 0.00 0.00 0.00 2.90
4012 5150 4.273480 CCAACTCAACGAAAACTCATCTGT 59.727 41.667 0.00 0.00 0.00 3.41
4013 5151 5.465390 CCAACTCAACGAAAACTCATCTGTA 59.535 40.000 0.00 0.00 0.00 2.74
4016 5154 7.178712 ACTCAACGAAAACTCATCTGTAAAG 57.821 36.000 0.00 0.00 0.00 1.85
4017 5155 6.761714 ACTCAACGAAAACTCATCTGTAAAGT 59.238 34.615 0.00 0.00 0.00 2.66
4021 5159 6.646636 ACGAAAACTCATCTGTAAAGTTTCG 58.353 36.000 12.17 12.17 41.17 3.46
4022 5160 6.257193 ACGAAAACTCATCTGTAAAGTTTCGT 59.743 34.615 13.29 13.29 41.17 3.85
4023 5161 6.786103 CGAAAACTCATCTGTAAAGTTTCGTC 59.214 38.462 0.00 0.00 41.17 4.20
4024 5162 7.306632 CGAAAACTCATCTGTAAAGTTTCGTCT 60.307 37.037 0.00 0.00 41.17 4.18
4025 5163 7.787725 AAACTCATCTGTAAAGTTTCGTCTT 57.212 32.000 0.00 0.00 38.51 3.01
4026 5164 6.771188 ACTCATCTGTAAAGTTTCGTCTTG 57.229 37.500 0.00 0.00 0.00 3.02
4027 5165 5.177696 ACTCATCTGTAAAGTTTCGTCTTGC 59.822 40.000 0.00 0.00 0.00 4.01
4028 5166 5.053811 TCATCTGTAAAGTTTCGTCTTGCA 58.946 37.500 0.00 0.00 0.00 4.08
4029 5167 5.177511 TCATCTGTAAAGTTTCGTCTTGCAG 59.822 40.000 0.00 0.00 35.08 4.41
4030 5168 4.439057 TCTGTAAAGTTTCGTCTTGCAGT 58.561 39.130 0.00 0.00 35.20 4.40
4031 5169 4.873827 TCTGTAAAGTTTCGTCTTGCAGTT 59.126 37.500 0.00 0.00 35.20 3.16
4032 5170 5.353123 TCTGTAAAGTTTCGTCTTGCAGTTT 59.647 36.000 0.00 0.00 35.20 2.66
4033 5171 5.565695 TGTAAAGTTTCGTCTTGCAGTTTC 58.434 37.500 0.00 0.00 0.00 2.78
4034 5172 3.319238 AAGTTTCGTCTTGCAGTTTCG 57.681 42.857 0.00 0.00 0.00 3.46
4035 5173 1.003866 AGTTTCGTCTTGCAGTTTCGC 60.004 47.619 0.00 0.00 0.00 4.70
4036 5174 1.010580 TTTCGTCTTGCAGTTTCGCA 58.989 45.000 0.00 0.00 41.03 5.10
4038 5176 1.437089 CGTCTTGCAGTTTCGCACG 60.437 57.895 0.00 0.00 42.87 5.34
4039 5177 1.817217 CGTCTTGCAGTTTCGCACGA 61.817 55.000 0.00 0.00 42.87 4.35
4040 5178 1.931551 TCTTGCAGTTTCGCACGAC 59.068 52.632 0.00 0.00 42.87 4.34
4041 5179 0.529773 TCTTGCAGTTTCGCACGACT 60.530 50.000 0.00 0.00 42.87 4.18
4042 5180 0.304705 CTTGCAGTTTCGCACGACTT 59.695 50.000 0.00 0.00 42.87 3.01
4044 5182 0.730265 TGCAGTTTCGCACGACTTTT 59.270 45.000 0.00 0.00 36.86 2.27
4052 6804 0.433492 CGCACGACTTTTGTACCTCG 59.567 55.000 0.00 0.00 0.00 4.63
4056 6808 1.336609 ACGACTTTTGTACCTCGAGCC 60.337 52.381 6.99 0.00 0.00 4.70
4061 6813 2.180159 TTTGTACCTCGAGCCTGCCC 62.180 60.000 6.99 0.00 0.00 5.36
4066 6818 2.664081 CCTCGAGCCTGCCCTTCTT 61.664 63.158 6.99 0.00 0.00 2.52
4082 6834 3.254411 CCTTCTTTTCTTCCTTCAGCACC 59.746 47.826 0.00 0.00 0.00 5.01
4086 6838 2.038863 TTCTTCCTTCAGCACCCCTA 57.961 50.000 0.00 0.00 0.00 3.53
4090 6842 0.116342 TCCTTCAGCACCCCTACTCA 59.884 55.000 0.00 0.00 0.00 3.41
4092 6844 0.976641 CTTCAGCACCCCTACTCACA 59.023 55.000 0.00 0.00 0.00 3.58
4143 6895 6.219473 AGAGGTAAGATTAATCATCTGTGCG 58.781 40.000 17.56 0.00 41.93 5.34
4148 6900 2.761392 TTAATCATCTGTGCGCATGC 57.239 45.000 15.91 7.91 43.20 4.06
4164 6916 3.724374 GCATGCAACCAAATAGCATCAT 58.276 40.909 14.21 0.00 46.39 2.45
4165 6917 3.493129 GCATGCAACCAAATAGCATCATG 59.507 43.478 14.21 0.00 46.39 3.07
4168 6920 4.496360 TGCAACCAAATAGCATCATGTTG 58.504 39.130 0.00 0.00 32.55 3.33
4172 6924 4.940463 ACCAAATAGCATCATGTTGCATC 58.060 39.130 26.26 2.24 45.23 3.91
4176 6928 1.399714 AGCATCATGTTGCATCTGGG 58.600 50.000 26.26 0.00 45.23 4.45
4179 6931 1.954382 CATCATGTTGCATCTGGGGAG 59.046 52.381 0.00 0.00 0.00 4.30
4213 6965 2.032799 ACTAAACAACCATGCGTGTGTG 59.967 45.455 4.96 4.92 0.00 3.82
4217 6969 1.203523 ACAACCATGCGTGTGTGTTTT 59.796 42.857 4.96 0.00 0.00 2.43
4218 6970 1.851666 CAACCATGCGTGTGTGTTTTC 59.148 47.619 4.96 0.00 0.00 2.29
4219 6971 1.388547 ACCATGCGTGTGTGTTTTCT 58.611 45.000 4.96 0.00 0.00 2.52
4220 6972 1.333619 ACCATGCGTGTGTGTTTTCTC 59.666 47.619 4.96 0.00 0.00 2.87
4221 6973 1.333308 CCATGCGTGTGTGTTTTCTCA 59.667 47.619 4.96 0.00 0.00 3.27
4222 6974 2.602933 CCATGCGTGTGTGTTTTCTCAG 60.603 50.000 4.96 0.00 0.00 3.35
4223 6975 0.376852 TGCGTGTGTGTTTTCTCAGC 59.623 50.000 0.00 0.00 0.00 4.26
4224 6976 0.317020 GCGTGTGTGTTTTCTCAGCC 60.317 55.000 0.00 0.00 0.00 4.85
4225 6977 1.013596 CGTGTGTGTTTTCTCAGCCA 58.986 50.000 0.00 0.00 0.00 4.75
4226 6978 1.003545 CGTGTGTGTTTTCTCAGCCAG 60.004 52.381 0.00 0.00 0.00 4.85
4227 6979 1.334869 GTGTGTGTTTTCTCAGCCAGG 59.665 52.381 0.00 0.00 0.00 4.45
4228 6980 0.312102 GTGTGTTTTCTCAGCCAGGC 59.688 55.000 1.84 1.84 0.00 4.85
4229 6981 0.183492 TGTGTTTTCTCAGCCAGGCT 59.817 50.000 8.70 8.70 40.77 4.58
4230 6982 1.419762 TGTGTTTTCTCAGCCAGGCTA 59.580 47.619 15.64 0.00 36.40 3.93
4242 6994 0.548031 CCAGGCTAGGGAGAATGCAA 59.452 55.000 0.00 0.00 0.00 4.08
4248 7000 2.484594 GCTAGGGAGAATGCAAGAGACC 60.485 54.545 0.00 0.00 0.00 3.85
4258 7010 2.210116 TGCAAGAGACCAAACGAGTTC 58.790 47.619 0.00 0.00 0.00 3.01
4263 7015 1.865340 GAGACCAAACGAGTTCCACAC 59.135 52.381 0.00 0.00 0.00 3.82
4266 7018 1.133915 ACCAAACGAGTTCCACACCAT 60.134 47.619 0.00 0.00 0.00 3.55
4269 7021 2.813754 CAAACGAGTTCCACACCATGAT 59.186 45.455 0.00 0.00 0.00 2.45
4274 7026 4.023193 ACGAGTTCCACACCATGATTTTTC 60.023 41.667 0.00 0.00 0.00 2.29
4296 7057 1.132500 GTATCCACTTAGCCAGGCCT 58.868 55.000 8.22 0.00 0.00 5.19
4300 7061 0.618458 CCACTTAGCCAGGCCTAACA 59.382 55.000 3.98 0.00 0.00 2.41
4303 7064 1.702957 ACTTAGCCAGGCCTAACACAA 59.297 47.619 3.98 0.00 0.00 3.33
4307 7068 1.244019 GCCAGGCCTAACACAACCAG 61.244 60.000 3.98 0.00 0.00 4.00
4308 7069 1.244019 CCAGGCCTAACACAACCAGC 61.244 60.000 3.98 0.00 0.00 4.85
4310 7071 1.003118 CAGGCCTAACACAACCAGCTA 59.997 52.381 3.98 0.00 0.00 3.32
4314 7075 1.339727 CCTAACACAACCAGCTACCCC 60.340 57.143 0.00 0.00 0.00 4.95
4318 7079 0.958822 CACAACCAGCTACCCCAAAC 59.041 55.000 0.00 0.00 0.00 2.93
4320 7081 1.602605 AACCAGCTACCCCAAACGC 60.603 57.895 0.00 0.00 0.00 4.84
4321 7082 2.033448 CCAGCTACCCCAAACGCA 59.967 61.111 0.00 0.00 0.00 5.24
4322 7083 1.602323 CCAGCTACCCCAAACGCAA 60.602 57.895 0.00 0.00 0.00 4.85
4326 7087 0.955905 GCTACCCCAAACGCAAAAGA 59.044 50.000 0.00 0.00 0.00 2.52
4331 7092 0.593773 CCCAAACGCAAAAGACGTGG 60.594 55.000 0.00 0.00 44.30 4.94
4344 7105 1.005394 ACGTGGAGGCTACCAAACG 60.005 57.895 6.54 6.54 41.87 3.60
4356 7117 1.173913 ACCAAACGCCTCCTTATTGC 58.826 50.000 0.00 0.00 0.00 3.56
4364 7125 0.250081 CCTCCTTATTGCGAGAGGGC 60.250 60.000 6.37 0.00 41.90 5.19
4365 7126 0.755686 CTCCTTATTGCGAGAGGGCT 59.244 55.000 6.37 0.00 0.00 5.19
4366 7127 0.465705 TCCTTATTGCGAGAGGGCTG 59.534 55.000 6.37 0.00 0.00 4.85
4367 7128 0.533755 CCTTATTGCGAGAGGGCTGG 60.534 60.000 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 6.035435 CCACACGATCAAACATTTTTGTTTCA 59.965 34.615 4.35 0.00 42.51 2.69
29 30 3.882888 AGTTCACCACACGATCAAACATT 59.117 39.130 0.00 0.00 0.00 2.71
149 150 9.829507 TTTTCTACATCATGATTTTTGTTTGGT 57.170 25.926 5.16 0.08 0.00 3.67
297 303 9.593134 ACATGCTTACATTGTTTGTTTCTTAAA 57.407 25.926 0.00 0.00 39.87 1.52
299 305 9.891828 CTACATGCTTACATTGTTTGTTTCTTA 57.108 29.630 0.00 0.00 39.87 2.10
358 364 4.340617 TGGATGGACTGGGTGTATTTTTC 58.659 43.478 0.00 0.00 0.00 2.29
378 384 2.154854 TCGAGTTGTTCAGCTTCTGG 57.845 50.000 0.00 0.00 31.51 3.86
411 417 7.696872 GCTCAATATCCTACTTTTTCGTTTTCC 59.303 37.037 0.00 0.00 0.00 3.13
423 429 2.958818 TCCGGTGCTCAATATCCTACT 58.041 47.619 0.00 0.00 0.00 2.57
432 438 2.434185 GCGTCATCCGGTGCTCAA 60.434 61.111 0.00 0.00 36.94 3.02
464 470 5.270812 TCGTTTTTGTTTTTCTGTTTGCC 57.729 34.783 0.00 0.00 0.00 4.52
718 880 7.751047 CAATAAATGGAGTCAGCTCAAATTG 57.249 36.000 0.00 0.00 43.37 2.32
736 898 3.244561 TGGAATTTTTGCCGCCCAATAAA 60.245 39.130 0.00 0.00 32.49 1.40
835 997 4.124970 GGATCGGTACTTATGGTTGGAAC 58.875 47.826 0.00 0.00 0.00 3.62
836 998 3.135167 GGGATCGGTACTTATGGTTGGAA 59.865 47.826 0.00 0.00 0.00 3.53
837 999 2.701951 GGGATCGGTACTTATGGTTGGA 59.298 50.000 0.00 0.00 0.00 3.53
838 1000 2.224450 GGGGATCGGTACTTATGGTTGG 60.224 54.545 0.00 0.00 0.00 3.77
839 1001 2.547218 CGGGGATCGGTACTTATGGTTG 60.547 54.545 0.00 0.00 34.75 3.77
840 1002 1.690352 CGGGGATCGGTACTTATGGTT 59.310 52.381 0.00 0.00 34.75 3.67
841 1003 1.133388 TCGGGGATCGGTACTTATGGT 60.133 52.381 0.00 0.00 39.77 3.55
852 1014 3.681835 GACGGGGATCGGGGATCG 61.682 72.222 0.00 0.00 44.45 3.69
853 1015 3.311913 GGACGGGGATCGGGGATC 61.312 72.222 0.00 0.00 44.45 3.36
854 1016 3.707025 TTGGACGGGGATCGGGGAT 62.707 63.158 0.00 0.00 44.45 3.85
855 1017 4.401876 TTGGACGGGGATCGGGGA 62.402 66.667 0.00 0.00 44.45 4.81
856 1018 4.171103 GTTGGACGGGGATCGGGG 62.171 72.222 0.00 0.00 44.45 5.73
857 1019 4.524318 CGTTGGACGGGGATCGGG 62.524 72.222 0.00 0.00 44.45 5.14
878 1040 1.098050 GTGGTTGGCTCTATGCAAGG 58.902 55.000 0.00 0.00 45.15 3.61
898 1060 1.888512 TCGCTACCACGTTAAGAAGGT 59.111 47.619 0.00 0.00 36.24 3.50
902 1064 2.153645 TGACTCGCTACCACGTTAAGA 58.846 47.619 0.00 0.00 0.00 2.10
903 1065 2.095364 ACTGACTCGCTACCACGTTAAG 60.095 50.000 0.00 0.00 0.00 1.85
904 1066 1.881973 ACTGACTCGCTACCACGTTAA 59.118 47.619 0.00 0.00 0.00 2.01
905 1067 1.198408 CACTGACTCGCTACCACGTTA 59.802 52.381 0.00 0.00 0.00 3.18
906 1068 0.039437 CACTGACTCGCTACCACGTT 60.039 55.000 0.00 0.00 0.00 3.99
907 1069 0.887836 TCACTGACTCGCTACCACGT 60.888 55.000 0.00 0.00 0.00 4.49
909 1071 0.454620 CGTCACTGACTCGCTACCAC 60.455 60.000 7.58 0.00 0.00 4.16
910 1072 1.873863 CGTCACTGACTCGCTACCA 59.126 57.895 7.58 0.00 0.00 3.25
961 1132 2.105930 GTAGCTGAGCGGGCAGAG 59.894 66.667 0.00 0.00 38.14 3.35
965 1136 4.096003 TTGGGTAGCTGAGCGGGC 62.096 66.667 0.00 0.00 0.00 6.13
972 1143 1.517832 CCGGTCTCTTGGGTAGCTG 59.482 63.158 0.00 0.00 0.00 4.24
1329 1508 5.063060 GGTGTCGAGTGGTGTGTAATTAATC 59.937 44.000 0.00 0.00 0.00 1.75
1365 1545 4.464008 ACAAATCCAGAAGAGCTGTTCAA 58.536 39.130 24.03 10.48 43.33 2.69
1417 1597 4.036498 TCCGCCGAACAAAACAGATTAAAA 59.964 37.500 0.00 0.00 0.00 1.52
1450 2366 3.521560 ACGTACTTGCATCATGAACGAT 58.478 40.909 17.93 3.02 33.40 3.73
1451 2367 2.921121 GACGTACTTGCATCATGAACGA 59.079 45.455 17.93 5.11 33.40 3.85
1509 2425 4.572389 GGCATCGATCTTGTATCTTTGTGT 59.428 41.667 0.00 0.00 0.00 3.72
1611 2530 3.193263 CAGTATACTCCAGTGCAGCAAG 58.807 50.000 1.26 0.00 0.00 4.01
1628 2547 6.381707 TGGACTACAATAATGCCAGTACAGTA 59.618 38.462 0.00 0.00 33.19 2.74
1629 2548 5.188948 TGGACTACAATAATGCCAGTACAGT 59.811 40.000 0.00 0.00 33.19 3.55
1630 2549 5.670485 TGGACTACAATAATGCCAGTACAG 58.330 41.667 0.00 0.00 33.19 2.74
1631 2550 5.670485 CTGGACTACAATAATGCCAGTACA 58.330 41.667 0.00 0.00 38.41 2.90
1635 2554 4.769688 TGACTGGACTACAATAATGCCAG 58.230 43.478 0.00 0.00 46.30 4.85
1636 2555 4.835284 TGACTGGACTACAATAATGCCA 57.165 40.909 0.00 0.00 0.00 4.92
1637 2556 4.576463 CCTTGACTGGACTACAATAATGCC 59.424 45.833 0.00 0.00 0.00 4.40
1644 2563 1.429930 TGGCCTTGACTGGACTACAA 58.570 50.000 3.32 0.00 35.73 2.41
1671 2590 2.602878 CAGAAACGGCATGTACGTACT 58.397 47.619 25.12 14.70 44.83 2.73
1672 2591 1.657094 CCAGAAACGGCATGTACGTAC 59.343 52.381 18.90 18.90 44.83 3.67
1673 2592 1.999048 CCAGAAACGGCATGTACGTA 58.001 50.000 15.92 0.00 44.83 3.57
1685 2604 0.238553 GAGGTGCTTTCGCCAGAAAC 59.761 55.000 0.00 0.00 45.27 2.78
1692 2611 0.390472 AGCTACAGAGGTGCTTTCGC 60.390 55.000 0.00 0.00 32.61 4.70
1767 2686 0.036388 GAGGAGATGGTGAAACGGCA 60.036 55.000 0.00 0.00 38.12 5.69
1768 2687 0.744771 GGAGGAGATGGTGAAACGGC 60.745 60.000 0.00 0.00 38.12 5.68
1769 2688 0.905357 AGGAGGAGATGGTGAAACGG 59.095 55.000 0.00 0.00 38.12 4.44
1771 2690 5.590663 GGAAATAAGGAGGAGATGGTGAAAC 59.409 44.000 0.00 0.00 0.00 2.78
1862 2796 0.872021 GTGAGCGGTAGGAATCAGCG 60.872 60.000 0.00 0.00 39.76 5.18
2009 2943 1.365699 CGAATTGGTCTGGTTACCCG 58.634 55.000 0.00 0.00 38.90 5.28
2103 3037 3.826729 GCAGTTTCTTCCTAACCACCAAT 59.173 43.478 0.00 0.00 0.00 3.16
2104 3038 3.219281 GCAGTTTCTTCCTAACCACCAA 58.781 45.455 0.00 0.00 0.00 3.67
2112 3046 7.378181 GGAAATCATTTTGCAGTTTCTTCCTA 58.622 34.615 0.00 0.00 33.71 2.94
2113 3047 6.226052 GGAAATCATTTTGCAGTTTCTTCCT 58.774 36.000 0.00 0.00 33.71 3.36
2389 3327 5.833667 TCTCCATCCGTATCCCACATATATC 59.166 44.000 0.00 0.00 0.00 1.63
2390 3328 5.777449 TCTCCATCCGTATCCCACATATAT 58.223 41.667 0.00 0.00 0.00 0.86
2391 3329 5.201363 TCTCCATCCGTATCCCACATATA 57.799 43.478 0.00 0.00 0.00 0.86
2409 3347 3.628032 GGACAATCCTTTCGGAAATCTCC 59.372 47.826 3.24 0.00 44.02 3.71
2431 3369 2.725206 CGATCTCGACAAGCATGATCTG 59.275 50.000 0.00 0.00 43.02 2.90
2487 3425 7.792374 TTTTCATGAACTCTGACCTATATGC 57.208 36.000 7.89 0.00 0.00 3.14
2488 3426 9.551734 TCATTTTCATGAACTCTGACCTATATG 57.448 33.333 7.89 0.00 36.41 1.78
2521 3459 9.204570 AGAAAAACACTACATATGTACACTGTC 57.795 33.333 11.62 4.34 0.00 3.51
2522 3460 9.555727 AAGAAAAACACTACATATGTACACTGT 57.444 29.630 11.62 15.12 0.00 3.55
2537 3475 7.066525 TCCTGTTATCGACAAAAGAAAAACACT 59.933 33.333 0.00 0.00 37.93 3.55
2559 3691 7.439655 GTCAACCTAGACTATTAAGCAATCCTG 59.560 40.741 0.00 0.00 35.65 3.86
2575 3707 5.724854 ACTAATTAAGCCAGGTCAACCTAGA 59.275 40.000 0.33 0.00 46.65 2.43
2586 3718 8.910944 TGAGTACTAACCTACTAATTAAGCCAG 58.089 37.037 0.00 0.00 0.00 4.85
2588 3720 9.694137 CATGAGTACTAACCTACTAATTAAGCC 57.306 37.037 0.00 0.00 0.00 4.35
2650 3782 9.647797 TGTGTACGAACAACATCTCTAATAATT 57.352 29.630 0.00 0.00 37.36 1.40
2720 3852 5.161358 GTGCTTAAATTCCTTTGTAGTGGC 58.839 41.667 0.00 0.00 0.00 5.01
2752 3884 4.284746 TGTGTACTGTATCATGGACCAACA 59.715 41.667 0.00 0.00 0.00 3.33
2755 3887 3.835395 TGTGTGTACTGTATCATGGACCA 59.165 43.478 0.00 0.00 0.00 4.02
2757 3889 5.073311 AGTGTGTGTACTGTATCATGGAC 57.927 43.478 0.00 0.00 0.00 4.02
2761 3893 6.096673 TGTTGAGTGTGTGTACTGTATCAT 57.903 37.500 0.00 0.00 0.00 2.45
2773 3905 1.417517 TGCTCCTGATGTTGAGTGTGT 59.582 47.619 0.00 0.00 0.00 3.72
2778 3910 2.429971 TCTAGCTGCTCCTGATGTTGAG 59.570 50.000 4.91 0.00 0.00 3.02
2788 3920 2.409651 CGGACGTCTAGCTGCTCC 59.590 66.667 16.46 0.00 0.00 4.70
2791 3923 2.102553 GTCCGGACGTCTAGCTGC 59.897 66.667 20.85 0.00 0.00 5.25
2941 4073 9.119418 TGGGTCATCACAGTAACAATATTATTG 57.881 33.333 13.64 13.64 0.00 1.90
3004 4138 9.420551 GTACATAGTGTTTGCTAGTTAGTTCTT 57.579 33.333 0.00 0.00 0.00 2.52
3005 4139 7.754027 CGTACATAGTGTTTGCTAGTTAGTTCT 59.246 37.037 0.00 0.00 0.00 3.01
3006 4140 7.540055 ACGTACATAGTGTTTGCTAGTTAGTTC 59.460 37.037 0.00 0.00 0.00 3.01
3007 4141 7.327761 CACGTACATAGTGTTTGCTAGTTAGTT 59.672 37.037 0.00 0.00 35.08 2.24
3008 4142 6.805271 CACGTACATAGTGTTTGCTAGTTAGT 59.195 38.462 0.00 0.00 35.08 2.24
3009 4143 6.237490 GCACGTACATAGTGTTTGCTAGTTAG 60.237 42.308 0.00 0.00 41.36 2.34
3010 4144 5.574055 GCACGTACATAGTGTTTGCTAGTTA 59.426 40.000 0.00 0.00 41.36 2.24
3011 4145 4.387862 GCACGTACATAGTGTTTGCTAGTT 59.612 41.667 0.00 0.00 41.36 2.24
3014 4148 3.915536 TGCACGTACATAGTGTTTGCTA 58.084 40.909 0.00 0.00 41.36 3.49
3023 4157 3.181503 ACGAAGTACCTGCACGTACATAG 60.182 47.826 22.59 15.56 41.94 2.23
3027 4161 1.334054 CACGAAGTACCTGCACGTAC 58.666 55.000 15.66 15.66 41.61 3.67
3029 4163 1.006571 CCACGAAGTACCTGCACGT 60.007 57.895 0.00 0.00 41.61 4.49
3379 4513 2.045634 GATGGGTCAGCAGCAGCA 60.046 61.111 3.17 0.00 45.49 4.41
3391 4525 3.928769 CGACGCGTGCATGATGGG 61.929 66.667 20.70 1.91 0.00 4.00
3450 4586 1.001048 CCGAGACCGTTAGTTCACACA 60.001 52.381 0.00 0.00 0.00 3.72
3486 4622 2.124011 ATGCGCGCCATTAAATCAAG 57.876 45.000 30.77 0.00 0.00 3.02
3555 4691 9.965902 GATCATACCAAGTAAAATCCTCCATAT 57.034 33.333 0.00 0.00 0.00 1.78
3652 4788 9.378551 GTGGATGTACATTCTAAAACATGTCTA 57.621 33.333 15.27 0.00 35.24 2.59
3653 4789 8.103305 AGTGGATGTACATTCTAAAACATGTCT 58.897 33.333 15.27 0.00 35.24 3.41
3654 4790 8.268850 AGTGGATGTACATTCTAAAACATGTC 57.731 34.615 15.27 0.00 35.24 3.06
3655 4791 7.882791 TGAGTGGATGTACATTCTAAAACATGT 59.117 33.333 15.27 0.00 37.40 3.21
3656 4792 8.267620 TGAGTGGATGTACATTCTAAAACATG 57.732 34.615 15.27 0.00 32.87 3.21
3657 4793 9.466497 AATGAGTGGATGTACATTCTAAAACAT 57.534 29.630 15.27 10.19 35.34 2.71
3658 4794 8.862325 AATGAGTGGATGTACATTCTAAAACA 57.138 30.769 15.27 8.58 0.00 2.83
3661 4797 8.243426 GCAAAATGAGTGGATGTACATTCTAAA 58.757 33.333 15.27 0.00 32.84 1.85
3662 4798 7.611467 AGCAAAATGAGTGGATGTACATTCTAA 59.389 33.333 15.27 6.04 32.84 2.10
3663 4799 7.112122 AGCAAAATGAGTGGATGTACATTCTA 58.888 34.615 15.27 1.99 32.84 2.10
3664 4800 5.948162 AGCAAAATGAGTGGATGTACATTCT 59.052 36.000 15.27 11.31 32.84 2.40
3665 4801 6.094603 AGAGCAAAATGAGTGGATGTACATTC 59.905 38.462 10.30 8.72 32.84 2.67
3666 4802 5.948162 AGAGCAAAATGAGTGGATGTACATT 59.052 36.000 10.30 0.00 34.99 2.71
3667 4803 5.503927 AGAGCAAAATGAGTGGATGTACAT 58.496 37.500 8.43 8.43 0.00 2.29
3668 4804 4.910195 AGAGCAAAATGAGTGGATGTACA 58.090 39.130 0.00 0.00 0.00 2.90
3669 4805 8.715998 CATATAGAGCAAAATGAGTGGATGTAC 58.284 37.037 0.00 0.00 0.00 2.90
3670 4806 8.432013 ACATATAGAGCAAAATGAGTGGATGTA 58.568 33.333 0.00 0.00 0.00 2.29
3671 4807 7.285566 ACATATAGAGCAAAATGAGTGGATGT 58.714 34.615 0.00 0.00 0.00 3.06
3672 4808 7.741027 ACATATAGAGCAAAATGAGTGGATG 57.259 36.000 0.00 0.00 0.00 3.51
3673 4809 8.654997 ACTACATATAGAGCAAAATGAGTGGAT 58.345 33.333 0.00 0.00 32.23 3.41
3674 4810 8.023021 ACTACATATAGAGCAAAATGAGTGGA 57.977 34.615 0.00 0.00 32.23 4.02
3675 4811 7.386299 GGACTACATATAGAGCAAAATGAGTGG 59.614 40.741 0.00 0.00 32.23 4.00
3676 4812 7.386299 GGGACTACATATAGAGCAAAATGAGTG 59.614 40.741 0.00 0.00 32.23 3.51
3677 4813 7.071196 TGGGACTACATATAGAGCAAAATGAGT 59.929 37.037 0.00 0.00 32.23 3.41
3678 4814 7.445121 TGGGACTACATATAGAGCAAAATGAG 58.555 38.462 0.00 0.00 32.23 2.90
3679 4815 7.373617 TGGGACTACATATAGAGCAAAATGA 57.626 36.000 0.00 0.00 32.23 2.57
3680 4816 8.627208 ATTGGGACTACATATAGAGCAAAATG 57.373 34.615 0.00 0.00 32.23 2.32
3681 4817 9.071276 CAATTGGGACTACATATAGAGCAAAAT 57.929 33.333 0.00 0.00 32.23 1.82
3682 4818 8.271458 TCAATTGGGACTACATATAGAGCAAAA 58.729 33.333 5.42 0.00 32.23 2.44
3683 4819 7.801104 TCAATTGGGACTACATATAGAGCAAA 58.199 34.615 5.42 0.00 32.23 3.68
3684 4820 7.373617 TCAATTGGGACTACATATAGAGCAA 57.626 36.000 5.42 0.00 32.23 3.91
3685 4821 6.994421 TCAATTGGGACTACATATAGAGCA 57.006 37.500 5.42 0.00 32.23 4.26
3686 4822 8.854614 ATTTCAATTGGGACTACATATAGAGC 57.145 34.615 5.42 0.00 32.23 4.09
3693 4829 9.753674 TTTTAGAGATTTCAATTGGGACTACAT 57.246 29.630 5.42 0.00 0.00 2.29
3694 4830 9.581289 TTTTTAGAGATTTCAATTGGGACTACA 57.419 29.630 5.42 0.00 0.00 2.74
3697 4833 8.797438 GTCTTTTTAGAGATTTCAATTGGGACT 58.203 33.333 5.42 0.65 0.00 3.85
3698 4834 8.797438 AGTCTTTTTAGAGATTTCAATTGGGAC 58.203 33.333 5.42 0.00 0.00 4.46
3699 4835 8.940397 AGTCTTTTTAGAGATTTCAATTGGGA 57.060 30.769 5.42 0.00 0.00 4.37
3717 4853 9.338622 CCCTCCGTTCATAAATATAAGTCTTTT 57.661 33.333 0.00 0.00 0.00 2.27
3718 4854 8.711170 TCCCTCCGTTCATAAATATAAGTCTTT 58.289 33.333 0.00 0.00 0.00 2.52
3719 4855 8.258850 TCCCTCCGTTCATAAATATAAGTCTT 57.741 34.615 0.00 0.00 0.00 3.01
3720 4856 7.509659 ACTCCCTCCGTTCATAAATATAAGTCT 59.490 37.037 0.00 0.00 0.00 3.24
3721 4857 7.668492 ACTCCCTCCGTTCATAAATATAAGTC 58.332 38.462 0.00 0.00 0.00 3.01
3722 4858 7.613551 ACTCCCTCCGTTCATAAATATAAGT 57.386 36.000 0.00 0.00 0.00 2.24
3727 4863 9.543231 AGATATTACTCCCTCCGTTCATAAATA 57.457 33.333 0.00 0.00 0.00 1.40
3728 4864 8.437274 AGATATTACTCCCTCCGTTCATAAAT 57.563 34.615 0.00 0.00 0.00 1.40
3729 4865 7.850935 AGATATTACTCCCTCCGTTCATAAA 57.149 36.000 0.00 0.00 0.00 1.40
3730 4866 7.120285 CGTAGATATTACTCCCTCCGTTCATAA 59.880 40.741 0.00 0.00 0.00 1.90
3731 4867 6.596888 CGTAGATATTACTCCCTCCGTTCATA 59.403 42.308 0.00 0.00 0.00 2.15
3732 4868 5.415077 CGTAGATATTACTCCCTCCGTTCAT 59.585 44.000 0.00 0.00 0.00 2.57
3733 4869 4.758674 CGTAGATATTACTCCCTCCGTTCA 59.241 45.833 0.00 0.00 0.00 3.18
3734 4870 4.155644 CCGTAGATATTACTCCCTCCGTTC 59.844 50.000 0.00 0.00 0.00 3.95
3735 4871 4.077822 CCGTAGATATTACTCCCTCCGTT 58.922 47.826 0.00 0.00 0.00 4.44
3736 4872 3.073650 ACCGTAGATATTACTCCCTCCGT 59.926 47.826 0.00 0.00 0.00 4.69
3737 4873 3.439476 CACCGTAGATATTACTCCCTCCG 59.561 52.174 0.00 0.00 0.00 4.63
3738 4874 4.660168 TCACCGTAGATATTACTCCCTCC 58.340 47.826 0.00 0.00 0.00 4.30
3739 4875 6.837471 AATCACCGTAGATATTACTCCCTC 57.163 41.667 0.00 0.00 0.00 4.30
3740 4876 6.072064 CGAAATCACCGTAGATATTACTCCCT 60.072 42.308 0.00 0.00 0.00 4.20
3741 4877 6.091437 CGAAATCACCGTAGATATTACTCCC 58.909 44.000 0.00 0.00 0.00 4.30
3742 4878 5.572126 GCGAAATCACCGTAGATATTACTCC 59.428 44.000 0.00 0.00 0.00 3.85
3743 4879 6.147581 TGCGAAATCACCGTAGATATTACTC 58.852 40.000 0.00 0.00 0.00 2.59
3744 4880 6.080648 TGCGAAATCACCGTAGATATTACT 57.919 37.500 0.00 0.00 0.00 2.24
3745 4881 6.584942 TCATGCGAAATCACCGTAGATATTAC 59.415 38.462 0.00 0.00 0.00 1.89
3746 4882 6.683715 TCATGCGAAATCACCGTAGATATTA 58.316 36.000 0.00 0.00 0.00 0.98
3747 4883 5.538118 TCATGCGAAATCACCGTAGATATT 58.462 37.500 0.00 0.00 0.00 1.28
3748 4884 5.134202 TCATGCGAAATCACCGTAGATAT 57.866 39.130 0.00 0.00 0.00 1.63
3749 4885 4.577834 TCATGCGAAATCACCGTAGATA 57.422 40.909 0.00 0.00 0.00 1.98
3750 4886 3.452755 TCATGCGAAATCACCGTAGAT 57.547 42.857 0.00 0.00 0.00 1.98
3751 4887 2.927477 GTTCATGCGAAATCACCGTAGA 59.073 45.455 0.00 0.00 31.43 2.59
3752 4888 2.930040 AGTTCATGCGAAATCACCGTAG 59.070 45.455 0.00 0.00 31.43 3.51
3753 4889 2.967362 AGTTCATGCGAAATCACCGTA 58.033 42.857 0.00 0.00 31.43 4.02
3754 4890 1.808411 AGTTCATGCGAAATCACCGT 58.192 45.000 0.00 0.00 31.43 4.83
3755 4891 4.536364 ATTAGTTCATGCGAAATCACCG 57.464 40.909 0.00 0.00 30.75 4.94
3756 4892 5.853282 GCATATTAGTTCATGCGAAATCACC 59.147 40.000 0.00 0.00 38.31 4.02
3757 4893 6.901699 GCATATTAGTTCATGCGAAATCAC 57.098 37.500 0.00 0.00 38.31 3.06
3809 4945 3.135712 TCACACCACAGGTACAATGAACT 59.864 43.478 4.48 0.00 32.11 3.01
3812 4948 2.969262 TCTCACACCACAGGTACAATGA 59.031 45.455 4.48 0.00 32.11 2.57
3818 4954 1.003118 GCCATTCTCACACCACAGGTA 59.997 52.381 0.00 0.00 32.11 3.08
3828 4964 2.796593 GCAACAAAAGTGCCATTCTCAC 59.203 45.455 0.00 0.00 35.91 3.51
3841 4977 0.683973 AATGGATGGGCGCAACAAAA 59.316 45.000 10.83 0.00 0.00 2.44
3842 4978 0.683973 AAATGGATGGGCGCAACAAA 59.316 45.000 10.83 0.00 0.00 2.83
3850 4986 3.160269 CCTATTGGAGAAATGGATGGGC 58.840 50.000 0.00 0.00 34.57 5.36
3900 5038 9.820229 TTATGAAAATCAACTACGAAACATGTC 57.180 29.630 0.00 0.00 0.00 3.06
3918 5056 9.010029 GGTCAGGTTCAAGATTAGTTATGAAAA 57.990 33.333 0.00 0.00 33.93 2.29
3919 5057 8.383175 AGGTCAGGTTCAAGATTAGTTATGAAA 58.617 33.333 0.00 0.00 33.93 2.69
3920 5058 7.918076 AGGTCAGGTTCAAGATTAGTTATGAA 58.082 34.615 0.00 0.00 0.00 2.57
3921 5059 7.364762 GGAGGTCAGGTTCAAGATTAGTTATGA 60.365 40.741 0.00 0.00 0.00 2.15
3922 5060 6.763610 GGAGGTCAGGTTCAAGATTAGTTATG 59.236 42.308 0.00 0.00 0.00 1.90
3923 5061 6.443849 TGGAGGTCAGGTTCAAGATTAGTTAT 59.556 38.462 0.00 0.00 0.00 1.89
3924 5062 5.783360 TGGAGGTCAGGTTCAAGATTAGTTA 59.217 40.000 0.00 0.00 0.00 2.24
3925 5063 4.597507 TGGAGGTCAGGTTCAAGATTAGTT 59.402 41.667 0.00 0.00 0.00 2.24
3926 5064 4.020128 GTGGAGGTCAGGTTCAAGATTAGT 60.020 45.833 0.00 0.00 0.00 2.24
3927 5065 4.020218 TGTGGAGGTCAGGTTCAAGATTAG 60.020 45.833 0.00 0.00 0.00 1.73
3928 5066 3.907474 TGTGGAGGTCAGGTTCAAGATTA 59.093 43.478 0.00 0.00 0.00 1.75
3929 5067 2.711009 TGTGGAGGTCAGGTTCAAGATT 59.289 45.455 0.00 0.00 0.00 2.40
3930 5068 2.338809 TGTGGAGGTCAGGTTCAAGAT 58.661 47.619 0.00 0.00 0.00 2.40
3931 5069 1.801242 TGTGGAGGTCAGGTTCAAGA 58.199 50.000 0.00 0.00 0.00 3.02
3932 5070 2.038952 TGATGTGGAGGTCAGGTTCAAG 59.961 50.000 0.00 0.00 0.00 3.02
3933 5071 2.054021 TGATGTGGAGGTCAGGTTCAA 58.946 47.619 0.00 0.00 0.00 2.69
3934 5072 1.347707 GTGATGTGGAGGTCAGGTTCA 59.652 52.381 0.00 0.00 0.00 3.18
3935 5073 1.347707 TGTGATGTGGAGGTCAGGTTC 59.652 52.381 0.00 0.00 0.00 3.62
3936 5074 1.434188 TGTGATGTGGAGGTCAGGTT 58.566 50.000 0.00 0.00 0.00 3.50
3937 5075 1.434188 TTGTGATGTGGAGGTCAGGT 58.566 50.000 0.00 0.00 0.00 4.00
3938 5076 2.238144 AGATTGTGATGTGGAGGTCAGG 59.762 50.000 0.00 0.00 0.00 3.86
3939 5077 3.623906 AGATTGTGATGTGGAGGTCAG 57.376 47.619 0.00 0.00 0.00 3.51
3940 5078 4.080919 CCTTAGATTGTGATGTGGAGGTCA 60.081 45.833 0.00 0.00 0.00 4.02
3941 5079 4.162320 TCCTTAGATTGTGATGTGGAGGTC 59.838 45.833 0.00 0.00 0.00 3.85
3942 5080 4.104086 TCCTTAGATTGTGATGTGGAGGT 58.896 43.478 0.00 0.00 0.00 3.85
3943 5081 4.760530 TCCTTAGATTGTGATGTGGAGG 57.239 45.455 0.00 0.00 0.00 4.30
3944 5082 8.781196 CAAATATCCTTAGATTGTGATGTGGAG 58.219 37.037 0.00 0.00 33.67 3.86
3945 5083 7.720957 CCAAATATCCTTAGATTGTGATGTGGA 59.279 37.037 0.00 0.00 33.67 4.02
3946 5084 7.040201 CCCAAATATCCTTAGATTGTGATGTGG 60.040 40.741 0.00 0.00 33.67 4.17
3947 5085 7.522725 GCCCAAATATCCTTAGATTGTGATGTG 60.523 40.741 0.00 0.00 33.67 3.21
3948 5086 6.491403 GCCCAAATATCCTTAGATTGTGATGT 59.509 38.462 0.00 0.00 33.67 3.06
3949 5087 6.071728 GGCCCAAATATCCTTAGATTGTGATG 60.072 42.308 0.00 0.00 33.67 3.07
3950 5088 6.012745 GGCCCAAATATCCTTAGATTGTGAT 58.987 40.000 0.00 0.00 33.67 3.06
3951 5089 5.103728 TGGCCCAAATATCCTTAGATTGTGA 60.104 40.000 0.00 0.00 33.67 3.58
3952 5090 5.010012 GTGGCCCAAATATCCTTAGATTGTG 59.990 44.000 0.00 0.00 33.67 3.33
3953 5091 5.140454 GTGGCCCAAATATCCTTAGATTGT 58.860 41.667 0.00 0.00 33.67 2.71
3954 5092 4.524328 GGTGGCCCAAATATCCTTAGATTG 59.476 45.833 0.00 0.00 33.67 2.67
3955 5093 4.449229 GGGTGGCCCAAATATCCTTAGATT 60.449 45.833 0.00 0.00 44.65 2.40
3956 5094 3.076032 GGGTGGCCCAAATATCCTTAGAT 59.924 47.826 0.00 0.00 44.65 1.98
3957 5095 2.445525 GGGTGGCCCAAATATCCTTAGA 59.554 50.000 0.00 0.00 44.65 2.10
3958 5096 2.814097 CGGGTGGCCCAAATATCCTTAG 60.814 54.545 0.00 0.00 45.83 2.18
3959 5097 1.144093 CGGGTGGCCCAAATATCCTTA 59.856 52.381 0.00 0.00 45.83 2.69
3960 5098 0.106217 CGGGTGGCCCAAATATCCTT 60.106 55.000 0.00 0.00 45.83 3.36
3961 5099 0.991355 TCGGGTGGCCCAAATATCCT 60.991 55.000 0.00 0.00 45.83 3.24
3962 5100 0.112412 ATCGGGTGGCCCAAATATCC 59.888 55.000 0.00 0.00 45.83 2.59
3963 5101 1.995376 AATCGGGTGGCCCAAATATC 58.005 50.000 0.00 0.00 45.83 1.63
3964 5102 2.091333 AGAAATCGGGTGGCCCAAATAT 60.091 45.455 0.00 0.00 45.83 1.28
3965 5103 1.286553 AGAAATCGGGTGGCCCAAATA 59.713 47.619 0.00 0.00 45.83 1.40
3966 5104 0.041090 AGAAATCGGGTGGCCCAAAT 59.959 50.000 0.00 0.00 45.83 2.32
3967 5105 0.178947 AAGAAATCGGGTGGCCCAAA 60.179 50.000 0.00 0.00 45.83 3.28
3968 5106 0.610785 GAAGAAATCGGGTGGCCCAA 60.611 55.000 0.00 0.00 45.83 4.12
3969 5107 1.001393 GAAGAAATCGGGTGGCCCA 60.001 57.895 0.00 0.00 45.83 5.36
3970 5108 1.753078 GGAAGAAATCGGGTGGCCC 60.753 63.158 0.00 0.00 41.09 5.80
3971 5109 1.753078 GGGAAGAAATCGGGTGGCC 60.753 63.158 0.00 0.00 0.00 5.36
3972 5110 1.753078 GGGGAAGAAATCGGGTGGC 60.753 63.158 0.00 0.00 0.00 5.01
3973 5111 0.039035 TTGGGGAAGAAATCGGGTGG 59.961 55.000 0.00 0.00 0.00 4.61
3974 5112 1.173913 GTTGGGGAAGAAATCGGGTG 58.826 55.000 0.00 0.00 0.00 4.61
3975 5113 1.004394 GAGTTGGGGAAGAAATCGGGT 59.996 52.381 0.00 0.00 0.00 5.28
3976 5114 1.004277 TGAGTTGGGGAAGAAATCGGG 59.996 52.381 0.00 0.00 0.00 5.14
3977 5115 2.488153 GTTGAGTTGGGGAAGAAATCGG 59.512 50.000 0.00 0.00 0.00 4.18
3978 5116 2.159627 CGTTGAGTTGGGGAAGAAATCG 59.840 50.000 0.00 0.00 0.00 3.34
3999 5137 7.852516 AGACGAAACTTTACAGATGAGTTTTC 58.147 34.615 0.00 0.00 42.03 2.29
4010 5148 5.554822 AAACTGCAAGACGAAACTTTACA 57.445 34.783 0.00 0.00 37.43 2.41
4011 5149 4.664851 CGAAACTGCAAGACGAAACTTTAC 59.335 41.667 0.00 0.00 37.43 2.01
4012 5150 4.784079 GCGAAACTGCAAGACGAAACTTTA 60.784 41.667 0.00 0.00 37.43 1.85
4013 5151 3.680789 CGAAACTGCAAGACGAAACTTT 58.319 40.909 0.00 0.00 37.43 2.66
4016 5154 1.267832 TGCGAAACTGCAAGACGAAAC 60.268 47.619 0.00 0.00 43.02 2.78
4017 5155 1.010580 TGCGAAACTGCAAGACGAAA 58.989 45.000 0.00 0.00 43.02 3.46
4025 5163 0.730265 AAAAGTCGTGCGAAACTGCA 59.270 45.000 0.00 0.00 43.95 4.41
4026 5164 1.112459 CAAAAGTCGTGCGAAACTGC 58.888 50.000 0.00 0.00 0.00 4.40
4027 5165 2.452006 ACAAAAGTCGTGCGAAACTG 57.548 45.000 0.00 0.00 0.00 3.16
4028 5166 2.286025 GGTACAAAAGTCGTGCGAAACT 59.714 45.455 0.00 0.00 0.00 2.66
4029 5167 2.286025 AGGTACAAAAGTCGTGCGAAAC 59.714 45.455 0.00 0.00 0.00 2.78
4030 5168 2.540931 GAGGTACAAAAGTCGTGCGAAA 59.459 45.455 0.00 0.00 0.00 3.46
4031 5169 2.129607 GAGGTACAAAAGTCGTGCGAA 58.870 47.619 0.00 0.00 0.00 4.70
4032 5170 1.774639 GAGGTACAAAAGTCGTGCGA 58.225 50.000 0.00 0.00 0.00 5.10
4033 5171 0.433492 CGAGGTACAAAAGTCGTGCG 59.567 55.000 0.00 0.00 0.00 5.34
4034 5172 1.719780 CTCGAGGTACAAAAGTCGTGC 59.280 52.381 3.91 0.00 34.07 5.34
4035 5173 1.719780 GCTCGAGGTACAAAAGTCGTG 59.280 52.381 15.58 0.00 34.07 4.35
4036 5174 1.336609 GGCTCGAGGTACAAAAGTCGT 60.337 52.381 15.58 0.00 34.07 4.34
4038 5176 2.338500 CAGGCTCGAGGTACAAAAGTC 58.662 52.381 15.58 0.00 0.00 3.01
4039 5177 1.608283 GCAGGCTCGAGGTACAAAAGT 60.608 52.381 15.58 0.00 0.00 2.66
4040 5178 1.079503 GCAGGCTCGAGGTACAAAAG 58.920 55.000 15.58 0.00 0.00 2.27
4041 5179 0.321298 GGCAGGCTCGAGGTACAAAA 60.321 55.000 15.58 0.00 0.00 2.44
4042 5180 1.295423 GGCAGGCTCGAGGTACAAA 59.705 57.895 15.58 0.00 0.00 2.83
4044 5182 3.075005 GGGCAGGCTCGAGGTACA 61.075 66.667 15.58 0.00 0.00 2.90
4052 6804 1.815613 GAAGAAAAGAAGGGCAGGCTC 59.184 52.381 0.00 0.00 0.00 4.70
4056 6808 3.490348 TGAAGGAAGAAAAGAAGGGCAG 58.510 45.455 0.00 0.00 0.00 4.85
4061 6813 3.254411 GGGTGCTGAAGGAAGAAAAGAAG 59.746 47.826 0.00 0.00 0.00 2.85
4066 6818 1.149101 AGGGGTGCTGAAGGAAGAAA 58.851 50.000 0.00 0.00 0.00 2.52
4090 6842 1.493022 TGGCAAACTTACCTCACCTGT 59.507 47.619 0.00 0.00 0.00 4.00
4092 6844 1.542547 CGTGGCAAACTTACCTCACCT 60.543 52.381 0.00 0.00 0.00 4.00
4104 6856 3.134574 ACCTCTTATTCACGTGGCAAA 57.865 42.857 17.00 2.78 0.00 3.68
4106 6858 3.512329 TCTTACCTCTTATTCACGTGGCA 59.488 43.478 17.00 2.93 0.00 4.92
4107 6859 4.119442 TCTTACCTCTTATTCACGTGGC 57.881 45.455 17.00 0.00 0.00 5.01
4143 6895 3.167921 TGATGCTATTTGGTTGCATGC 57.832 42.857 11.82 11.82 46.80 4.06
4148 6900 4.496360 TGCAACATGATGCTATTTGGTTG 58.504 39.130 25.80 4.91 46.54 3.77
4156 6908 2.578786 CCCAGATGCAACATGATGCTA 58.421 47.619 25.80 14.28 46.54 3.49
4158 6910 0.387929 CCCCAGATGCAACATGATGC 59.612 55.000 20.11 20.11 46.58 3.91
4164 6916 1.459812 TTGCTCCCCAGATGCAACA 59.540 52.632 0.00 0.00 41.06 3.33
4165 6917 4.421365 TTGCTCCCCAGATGCAAC 57.579 55.556 0.00 0.00 41.06 4.17
4168 6920 1.440476 GCAATTGCTCCCCAGATGC 59.560 57.895 23.21 0.00 38.21 3.91
4176 6928 5.768317 TGTTTAGTAACAAGCAATTGCTCC 58.232 37.500 32.01 17.14 42.59 4.70
4200 6952 1.333619 GAGAAAACACACACGCATGGT 59.666 47.619 0.00 0.00 0.00 3.55
4201 6953 1.333308 TGAGAAAACACACACGCATGG 59.667 47.619 0.00 0.00 0.00 3.66
4206 6958 1.003545 CTGGCTGAGAAAACACACACG 60.004 52.381 0.00 0.00 0.00 4.49
4208 6960 1.679139 CCTGGCTGAGAAAACACACA 58.321 50.000 0.00 0.00 0.00 3.72
4213 6965 1.680249 CCCTAGCCTGGCTGAGAAAAC 60.680 57.143 30.83 0.00 40.10 2.43
4217 6969 1.075674 CTCCCTAGCCTGGCTGAGA 60.076 63.158 30.83 21.16 40.10 3.27
4218 6970 0.689080 TTCTCCCTAGCCTGGCTGAG 60.689 60.000 30.83 25.86 40.10 3.35
4219 6971 0.030705 ATTCTCCCTAGCCTGGCTGA 60.031 55.000 30.83 18.16 40.10 4.26
4220 6972 0.108207 CATTCTCCCTAGCCTGGCTG 59.892 60.000 30.83 19.25 40.10 4.85
4221 6973 1.704007 GCATTCTCCCTAGCCTGGCT 61.704 60.000 26.52 26.52 43.41 4.75
4222 6974 1.228094 GCATTCTCCCTAGCCTGGC 60.228 63.158 11.65 11.65 0.00 4.85
4223 6975 0.548031 TTGCATTCTCCCTAGCCTGG 59.452 55.000 0.00 0.00 0.00 4.45
4224 6976 1.487976 TCTTGCATTCTCCCTAGCCTG 59.512 52.381 0.00 0.00 0.00 4.85
4225 6977 1.767681 CTCTTGCATTCTCCCTAGCCT 59.232 52.381 0.00 0.00 0.00 4.58
4226 6978 1.765314 TCTCTTGCATTCTCCCTAGCC 59.235 52.381 0.00 0.00 0.00 3.93
4227 6979 2.484594 GGTCTCTTGCATTCTCCCTAGC 60.485 54.545 0.00 0.00 0.00 3.42
4228 6980 2.768527 TGGTCTCTTGCATTCTCCCTAG 59.231 50.000 0.00 0.00 0.00 3.02
4229 6981 2.832838 TGGTCTCTTGCATTCTCCCTA 58.167 47.619 0.00 0.00 0.00 3.53
4230 6982 1.661463 TGGTCTCTTGCATTCTCCCT 58.339 50.000 0.00 0.00 0.00 4.20
4242 6994 1.760613 TGTGGAACTCGTTTGGTCTCT 59.239 47.619 0.00 0.00 38.04 3.10
4248 7000 2.217750 TCATGGTGTGGAACTCGTTTG 58.782 47.619 0.00 0.00 38.04 2.93
4258 7010 5.163519 GGATACAGGAAAAATCATGGTGTGG 60.164 44.000 0.00 0.00 0.00 4.17
4296 7057 1.436326 TGGGGTAGCTGGTTGTGTTA 58.564 50.000 0.00 0.00 0.00 2.41
4300 7061 0.536460 CGTTTGGGGTAGCTGGTTGT 60.536 55.000 0.00 0.00 0.00 3.32
4303 7064 2.033602 GCGTTTGGGGTAGCTGGT 59.966 61.111 0.00 0.00 0.00 4.00
4307 7068 0.955905 TCTTTTGCGTTTGGGGTAGC 59.044 50.000 0.00 0.00 0.00 3.58
4308 7069 1.069500 CGTCTTTTGCGTTTGGGGTAG 60.069 52.381 0.00 0.00 0.00 3.18
4310 7071 1.033202 ACGTCTTTTGCGTTTGGGGT 61.033 50.000 0.00 0.00 39.79 4.95
4314 7075 1.596954 CCTCCACGTCTTTTGCGTTTG 60.597 52.381 0.00 0.00 40.90 2.93
4318 7079 0.669318 TAGCCTCCACGTCTTTTGCG 60.669 55.000 0.00 0.00 0.00 4.85
4320 7081 1.270625 TGGTAGCCTCCACGTCTTTTG 60.271 52.381 0.00 0.00 31.96 2.44
4321 7082 1.053424 TGGTAGCCTCCACGTCTTTT 58.947 50.000 0.00 0.00 31.96 2.27
4322 7083 1.053424 TTGGTAGCCTCCACGTCTTT 58.947 50.000 0.00 0.00 37.20 2.52
4326 7087 1.005394 CGTTTGGTAGCCTCCACGT 60.005 57.895 0.00 0.00 37.20 4.49
4344 7105 0.250081 CCCTCTCGCAATAAGGAGGC 60.250 60.000 0.00 0.00 42.71 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.