Multiple sequence alignment - TraesCS7D01G381100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G381100 chr7D 100.000 3800 0 0 3353 7152 495309342 495313141 0.000000e+00 7018.0
1 TraesCS7D01G381100 chr7D 100.000 2868 0 0 1 2868 495305990 495308857 0.000000e+00 5297.0
2 TraesCS7D01G381100 chr7D 92.998 1628 110 4 3499 5124 206687888 206689513 0.000000e+00 2372.0
3 TraesCS7D01G381100 chr7D 89.339 666 60 9 2205 2868 613367990 613368646 0.000000e+00 826.0
4 TraesCS7D01G381100 chr7D 90.526 570 45 4 177 743 518953895 518953332 0.000000e+00 745.0
5 TraesCS7D01G381100 chr7D 89.535 172 15 3 1532 1702 5492045 5492214 1.560000e-51 215.0
6 TraesCS7D01G381100 chr7D 89.412 170 16 2 1532 1700 246603800 246603632 5.620000e-51 213.0
7 TraesCS7D01G381100 chr7D 92.958 142 9 1 3355 3496 629466519 629466379 9.400000e-49 206.0
8 TraesCS7D01G381100 chr7D 94.737 76 3 1 2793 2868 629466651 629466577 4.530000e-22 117.0
9 TraesCS7D01G381100 chr7D 95.122 41 2 0 7047 7087 40530032 40530072 1.670000e-06 65.8
10 TraesCS7D01G381100 chr7B 90.998 1933 131 25 5235 7152 523165903 523167807 0.000000e+00 2566.0
11 TraesCS7D01G381100 chr7B 93.101 1638 98 10 3499 5124 366044882 366046516 0.000000e+00 2385.0
12 TraesCS7D01G381100 chr7B 91.750 800 37 9 744 1534 523164565 523165344 0.000000e+00 1085.0
13 TraesCS7D01G381100 chr7B 90.047 633 52 8 2152 2782 226430893 226431516 0.000000e+00 809.0
14 TraesCS7D01G381100 chr7B 93.784 370 21 2 1702 2069 523165346 523165715 8.110000e-154 555.0
15 TraesCS7D01G381100 chr7B 84.390 205 26 6 1532 1732 328512155 328511953 5.660000e-46 196.0
16 TraesCS7D01G381100 chr7B 94.118 68 4 0 5129 5196 226430955 226430888 3.530000e-18 104.0
17 TraesCS7D01G381100 chr7B 95.122 41 2 0 7047 7087 51157783 51157743 1.670000e-06 65.8
18 TraesCS7D01G381100 chr1D 94.298 1631 90 3 3499 5127 322389205 322387576 0.000000e+00 2494.0
19 TraesCS7D01G381100 chr1D 90.476 735 52 11 2151 2868 322390383 322389650 0.000000e+00 953.0
20 TraesCS7D01G381100 chr1D 90.141 568 47 5 177 743 9220718 9220159 0.000000e+00 730.0
21 TraesCS7D01G381100 chr1D 99.441 179 1 0 1 179 58411240 58411418 6.920000e-85 326.0
22 TraesCS7D01G381100 chr1D 97.849 186 3 1 1 185 434526922 434527107 3.220000e-83 320.0
23 TraesCS7D01G381100 chr1D 90.385 156 13 2 1542 1696 220154288 220154134 3.380000e-48 204.0
24 TraesCS7D01G381100 chr1D 88.623 167 17 2 1531 1696 307007372 307007537 1.220000e-47 202.0
25 TraesCS7D01G381100 chr1D 92.199 141 11 0 3354 3494 12545237 12545097 4.380000e-47 200.0
26 TraesCS7D01G381100 chr2D 91.779 1788 129 14 3355 5127 582525612 582523828 0.000000e+00 2471.0
27 TraesCS7D01G381100 chr2D 89.932 735 56 10 2151 2868 582524187 582523454 0.000000e+00 931.0
28 TraesCS7D01G381100 chr2D 87.544 570 58 7 177 743 517035994 517036553 0.000000e+00 647.0
29 TraesCS7D01G381100 chr2D 97.861 187 4 0 1 187 643408379 643408193 2.490000e-84 324.0
30 TraesCS7D01G381100 chr2D 89.474 171 16 2 1529 1698 47658286 47658455 1.560000e-51 215.0
31 TraesCS7D01G381100 chr2D 92.053 151 12 0 3355 3505 587240227 587240077 5.620000e-51 213.0
32 TraesCS7D01G381100 chr2D 89.222 167 16 2 1531 1696 367778413 367778248 2.610000e-49 207.0
33 TraesCS7D01G381100 chr2D 77.165 127 23 5 6966 7087 21122666 21122541 1.290000e-07 69.4
34 TraesCS7D01G381100 chr3D 92.608 1718 111 5 3422 5124 1212880 1214596 0.000000e+00 2455.0
35 TraesCS7D01G381100 chr3D 92.875 1628 114 2 3499 5124 96682570 96684197 0.000000e+00 2362.0
36 TraesCS7D01G381100 chr3D 90.756 1720 123 16 3354 5056 605261087 605262787 0.000000e+00 2263.0
37 TraesCS7D01G381100 chr3D 86.408 721 77 16 2152 2866 605260324 605261029 0.000000e+00 769.0
38 TraesCS7D01G381100 chr3D 89.792 480 41 6 2390 2868 562568322 562567850 6.130000e-170 608.0
39 TraesCS7D01G381100 chr3D 95.918 196 6 2 1 195 590130801 590130607 4.160000e-82 316.0
40 TraesCS7D01G381100 chr3D 93.689 206 11 1 1 204 603898202 603898407 2.510000e-79 307.0
41 TraesCS7D01G381100 chr3D 91.391 151 13 0 3355 3505 678761 678611 2.610000e-49 207.0
42 TraesCS7D01G381100 chr3D 89.222 167 16 2 1531 1696 145972544 145972709 2.610000e-49 207.0
43 TraesCS7D01G381100 chr3D 93.243 74 4 1 5126 5199 182650406 182650478 2.730000e-19 108.0
44 TraesCS7D01G381100 chr3D 78.519 135 23 4 6958 7087 11129680 11129547 4.600000e-12 84.2
45 TraesCS7D01G381100 chr3D 95.122 41 2 0 7047 7087 454814383 454814343 1.670000e-06 65.8
46 TraesCS7D01G381100 chr5D 93.742 1630 100 2 3500 5127 70159830 70158201 0.000000e+00 2444.0
47 TraesCS7D01G381100 chr5D 89.986 719 55 5 2152 2868 70160877 70160174 0.000000e+00 913.0
48 TraesCS7D01G381100 chr5D 88.072 612 54 13 2152 2752 164648012 164648615 0.000000e+00 708.0
49 TraesCS7D01G381100 chr5D 87.542 594 42 14 177 744 50480162 50480749 0.000000e+00 658.0
50 TraesCS7D01G381100 chr5D 96.891 193 4 2 1 192 113874476 113874667 8.950000e-84 322.0
51 TraesCS7D01G381100 chr5D 98.870 177 2 0 1 177 109501786 109501962 4.160000e-82 316.0
52 TraesCS7D01G381100 chr5D 89.349 169 16 2 1529 1696 121910414 121910247 2.020000e-50 211.0
53 TraesCS7D01G381100 chr5D 88.623 167 17 2 1531 1696 225722458 225722293 1.220000e-47 202.0
54 TraesCS7D01G381100 chr5D 88.024 167 18 2 1532 1697 400903154 400903319 5.660000e-46 196.0
55 TraesCS7D01G381100 chr5D 86.517 178 20 4 1529 1705 94987760 94987934 7.320000e-45 193.0
56 TraesCS7D01G381100 chr5D 85.792 183 21 5 1531 1710 15217174 15216994 9.470000e-44 189.0
57 TraesCS7D01G381100 chr5D 94.872 39 2 0 7047 7085 123319675 123319637 2.150000e-05 62.1
58 TraesCS7D01G381100 chr5D 92.683 41 3 0 7047 7087 35113422 35113382 7.750000e-05 60.2
59 TraesCS7D01G381100 chr5D 97.143 35 1 0 7047 7081 490373743 490373777 7.750000e-05 60.2
60 TraesCS7D01G381100 chr6D 94.434 1581 83 5 3549 5124 411943992 411945572 0.000000e+00 2427.0
61 TraesCS7D01G381100 chr6D 94.196 1568 88 3 3559 5124 159346896 159348462 0.000000e+00 2388.0
62 TraesCS7D01G381100 chr6D 93.849 1577 93 4 3554 5127 305357040 305355465 0.000000e+00 2372.0
63 TraesCS7D01G381100 chr6D 88.292 726 60 10 2145 2868 157207459 157206757 0.000000e+00 846.0
64 TraesCS7D01G381100 chr6D 88.307 573 54 7 177 747 381519332 381519893 0.000000e+00 675.0
65 TraesCS7D01G381100 chr6D 89.286 168 16 2 1531 1697 218407209 218407375 7.270000e-50 209.0
66 TraesCS7D01G381100 chr6D 87.640 178 18 4 1529 1705 161556340 161556514 3.380000e-48 204.0
67 TraesCS7D01G381100 chr6D 88.554 166 17 2 1532 1696 104041326 104041162 4.380000e-47 200.0
68 TraesCS7D01G381100 chr6D 89.677 155 14 2 1543 1696 349141634 349141787 5.660000e-46 196.0
69 TraesCS7D01G381100 chr6D 88.024 167 18 2 1531 1696 353570125 353570290 5.660000e-46 196.0
70 TraesCS7D01G381100 chr6D 89.241 158 15 2 1543 1699 355973844 355973688 5.660000e-46 196.0
71 TraesCS7D01G381100 chr6D 87.574 169 18 3 1532 1698 308588156 308587989 7.320000e-45 193.0
72 TraesCS7D01G381100 chr6D 85.443 158 20 2 588 744 450559982 450559827 2.060000e-35 161.0
73 TraesCS7D01G381100 chr6D 87.786 131 12 3 620 749 40065426 40065299 4.470000e-32 150.0
74 TraesCS7D01G381100 chr6D 93.151 73 5 0 5120 5192 157207382 157207454 2.730000e-19 108.0
75 TraesCS7D01G381100 chr6D 96.825 63 2 0 5129 5191 16383695 16383633 9.810000e-19 106.0
76 TraesCS7D01G381100 chr6D 96.825 63 2 0 5129 5191 63835509 63835447 9.810000e-19 106.0
77 TraesCS7D01G381100 chr6D 96.825 63 2 0 5129 5191 63837530 63837468 9.810000e-19 106.0
78 TraesCS7D01G381100 chr6D 93.056 72 5 0 5120 5191 63843736 63843807 9.810000e-19 106.0
79 TraesCS7D01G381100 chr6D 93.056 72 5 0 5120 5191 63845762 63845833 9.810000e-19 106.0
80 TraesCS7D01G381100 chr6D 93.056 72 5 0 5120 5191 157205186 157205257 9.810000e-19 106.0
81 TraesCS7D01G381100 chr1A 90.578 1783 147 12 3357 5124 324849009 324850785 0.000000e+00 2342.0
82 TraesCS7D01G381100 chr1A 91.729 532 39 2 177 707 506240299 506240826 0.000000e+00 734.0
83 TraesCS7D01G381100 chr1A 88.554 166 17 2 1532 1696 11628172 11628336 4.380000e-47 200.0
84 TraesCS7D01G381100 chr1A 87.861 173 18 3 1532 1703 295312717 295312887 4.380000e-47 200.0
85 TraesCS7D01G381100 chr1A 86.932 176 21 2 1529 1703 90767547 90767721 5.660000e-46 196.0
86 TraesCS7D01G381100 chr7A 90.570 1527 129 7 3355 4867 699826356 699827881 0.000000e+00 2008.0
87 TraesCS7D01G381100 chr7A 92.071 1072 56 17 5192 6256 561050442 561051491 0.000000e+00 1482.0
88 TraesCS7D01G381100 chr7A 92.317 794 38 13 754 1534 561048967 561049750 0.000000e+00 1107.0
89 TraesCS7D01G381100 chr7A 89.455 569 53 3 177 744 17561244 17560682 0.000000e+00 712.0
90 TraesCS7D01G381100 chr7A 86.054 631 77 8 2176 2798 367001475 367000848 0.000000e+00 667.0
91 TraesCS7D01G381100 chr7A 92.838 377 22 4 1695 2068 561049748 561050122 6.310000e-150 542.0
92 TraesCS7D01G381100 chr7A 87.500 160 17 2 588 746 701155262 701155105 1.580000e-41 182.0
93 TraesCS7D01G381100 chr4D 90.621 725 44 8 2152 2853 55290940 55291663 0.000000e+00 941.0
94 TraesCS7D01G381100 chr4D 84.840 719 64 24 2152 2868 360949265 360948590 0.000000e+00 682.0
95 TraesCS7D01G381100 chr4D 86.856 388 42 7 3357 3738 225289437 225289053 6.630000e-115 425.0
96 TraesCS7D01G381100 chr4D 98.361 183 3 0 1 183 138139366 138139548 8.950000e-84 322.0
97 TraesCS7D01G381100 chr4D 96.859 191 3 3 1 190 464780072 464780260 4.160000e-82 316.0
98 TraesCS7D01G381100 chr4D 86.432 199 24 3 547 744 410302060 410301864 1.560000e-51 215.0
99 TraesCS7D01G381100 chr4D 88.304 171 18 2 1529 1698 455927825 455927656 3.380000e-48 204.0
100 TraesCS7D01G381100 chr4D 88.024 167 18 2 1531 1696 25900724 25900889 5.660000e-46 196.0
101 TraesCS7D01G381100 chr4D 88.024 167 18 2 1531 1696 489832630 489832795 5.660000e-46 196.0
102 TraesCS7D01G381100 chr4D 85.714 161 20 2 588 747 502721065 502720907 4.440000e-37 167.0
103 TraesCS7D01G381100 chr4B 87.569 724 71 16 2152 2868 216796344 216795633 0.000000e+00 821.0
104 TraesCS7D01G381100 chr4B 85.340 573 67 11 177 743 16377601 16378162 1.730000e-160 577.0
105 TraesCS7D01G381100 chr4B 90.683 161 13 2 1542 1701 429242074 429241915 5.620000e-51 213.0
106 TraesCS7D01G381100 chr4B 89.222 167 16 2 1531 1696 112187672 112187507 2.610000e-49 207.0
107 TraesCS7D01G381100 chr4B 89.157 166 16 2 1532 1696 83689200 83689036 9.400000e-49 206.0
108 TraesCS7D01G381100 chr4B 88.235 170 18 2 1531 1699 9545289 9545121 1.220000e-47 202.0
109 TraesCS7D01G381100 chr3B 88.514 592 37 10 177 743 398584174 398584759 0.000000e+00 688.0
110 TraesCS7D01G381100 chr3B 96.040 101 3 1 2768 2868 462664851 462664950 5.740000e-36 163.0
111 TraesCS7D01G381100 chr2A 81.157 743 89 26 2152 2868 587281238 587280521 3.770000e-152 549.0
112 TraesCS7D01G381100 chr5A 88.953 172 17 2 1529 1699 505768813 505768643 2.020000e-50 211.0
113 TraesCS7D01G381100 chr4A 87.709 179 20 2 1529 1706 534233757 534233934 2.610000e-49 207.0
114 TraesCS7D01G381100 chr4A 96.875 32 1 0 6474 6505 238413178 238413147 4.000000e-03 54.7
115 TraesCS7D01G381100 chr6A 88.623 167 17 2 1531 1696 458217709 458217874 1.220000e-47 202.0
116 TraesCS7D01G381100 chrUn 87.952 166 18 2 1532 1696 396163889 396163725 2.040000e-45 195.0
117 TraesCS7D01G381100 chrUn 88.535 157 16 2 1543 1698 178722492 178722337 9.470000e-44 189.0
118 TraesCS7D01G381100 chrUn 86.034 179 21 4 1529 1705 321005254 321005430 9.470000e-44 189.0
119 TraesCS7D01G381100 chrUn 87.425 167 18 3 1531 1696 325796116 325796280 9.470000e-44 189.0
120 TraesCS7D01G381100 chrUn 86.034 179 21 4 1529 1705 450105845 450106021 9.470000e-44 189.0
121 TraesCS7D01G381100 chrUn 86.391 169 20 3 1532 1699 69696111 69696277 1.580000e-41 182.0
122 TraesCS7D01G381100 chrUn 86.145 166 21 2 1532 1696 61801442 61801606 2.050000e-40 178.0
123 TraesCS7D01G381100 chrUn 86.228 167 18 5 1532 1696 21033226 21033063 7.370000e-40 176.0
124 TraesCS7D01G381100 chrUn 88.276 145 16 1 1555 1699 135090809 135090952 9.540000e-39 172.0
125 TraesCS7D01G381100 chrUn 85.629 167 19 5 1532 1696 103212505 103212668 3.430000e-38 171.0
126 TraesCS7D01G381100 chrUn 86.290 124 15 1 620 743 48741814 48741693 4.500000e-27 134.0
127 TraesCS7D01G381100 chrUn 85.938 128 15 3 617 743 218363942 218363817 4.500000e-27 134.0
128 TraesCS7D01G381100 chr2B 97.143 35 1 0 7047 7081 5108459 5108493 7.750000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G381100 chr7D 495305990 495313141 7151 False 6157.500000 7018 100.000000 1 7152 2 chr7D.!!$F5 7151
1 TraesCS7D01G381100 chr7D 206687888 206689513 1625 False 2372.000000 2372 92.998000 3499 5124 1 chr7D.!!$F3 1625
2 TraesCS7D01G381100 chr7D 613367990 613368646 656 False 826.000000 826 89.339000 2205 2868 1 chr7D.!!$F4 663
3 TraesCS7D01G381100 chr7D 518953332 518953895 563 True 745.000000 745 90.526000 177 743 1 chr7D.!!$R2 566
4 TraesCS7D01G381100 chr7B 366044882 366046516 1634 False 2385.000000 2385 93.101000 3499 5124 1 chr7B.!!$F2 1625
5 TraesCS7D01G381100 chr7B 523164565 523167807 3242 False 1402.000000 2566 92.177333 744 7152 3 chr7B.!!$F3 6408
6 TraesCS7D01G381100 chr7B 226430893 226431516 623 False 809.000000 809 90.047000 2152 2782 1 chr7B.!!$F1 630
7 TraesCS7D01G381100 chr1D 322387576 322390383 2807 True 1723.500000 2494 92.387000 2151 5127 2 chr1D.!!$R4 2976
8 TraesCS7D01G381100 chr1D 9220159 9220718 559 True 730.000000 730 90.141000 177 743 1 chr1D.!!$R1 566
9 TraesCS7D01G381100 chr2D 582523454 582525612 2158 True 1701.000000 2471 90.855500 2151 5127 2 chr2D.!!$R5 2976
10 TraesCS7D01G381100 chr2D 517035994 517036553 559 False 647.000000 647 87.544000 177 743 1 chr2D.!!$F2 566
11 TraesCS7D01G381100 chr3D 1212880 1214596 1716 False 2455.000000 2455 92.608000 3422 5124 1 chr3D.!!$F1 1702
12 TraesCS7D01G381100 chr3D 96682570 96684197 1627 False 2362.000000 2362 92.875000 3499 5124 1 chr3D.!!$F2 1625
13 TraesCS7D01G381100 chr3D 605260324 605262787 2463 False 1516.000000 2263 88.582000 2152 5056 2 chr3D.!!$F6 2904
14 TraesCS7D01G381100 chr5D 70158201 70160877 2676 True 1678.500000 2444 91.864000 2152 5127 2 chr5D.!!$R6 2975
15 TraesCS7D01G381100 chr5D 164648012 164648615 603 False 708.000000 708 88.072000 2152 2752 1 chr5D.!!$F5 600
16 TraesCS7D01G381100 chr5D 50480162 50480749 587 False 658.000000 658 87.542000 177 744 1 chr5D.!!$F1 567
17 TraesCS7D01G381100 chr6D 411943992 411945572 1580 False 2427.000000 2427 94.434000 3549 5124 1 chr6D.!!$F7 1575
18 TraesCS7D01G381100 chr6D 159346896 159348462 1566 False 2388.000000 2388 94.196000 3559 5124 1 chr6D.!!$F1 1565
19 TraesCS7D01G381100 chr6D 305355465 305357040 1575 True 2372.000000 2372 93.849000 3554 5127 1 chr6D.!!$R5 1573
20 TraesCS7D01G381100 chr6D 157206757 157207459 702 True 846.000000 846 88.292000 2145 2868 1 chr6D.!!$R4 723
21 TraesCS7D01G381100 chr6D 381519332 381519893 561 False 675.000000 675 88.307000 177 747 1 chr6D.!!$F6 570
22 TraesCS7D01G381100 chr1A 324849009 324850785 1776 False 2342.000000 2342 90.578000 3357 5124 1 chr1A.!!$F4 1767
23 TraesCS7D01G381100 chr1A 506240299 506240826 527 False 734.000000 734 91.729000 177 707 1 chr1A.!!$F5 530
24 TraesCS7D01G381100 chr7A 699826356 699827881 1525 False 2008.000000 2008 90.570000 3355 4867 1 chr7A.!!$F1 1512
25 TraesCS7D01G381100 chr7A 561048967 561051491 2524 False 1043.666667 1482 92.408667 754 6256 3 chr7A.!!$F2 5502
26 TraesCS7D01G381100 chr7A 17560682 17561244 562 True 712.000000 712 89.455000 177 744 1 chr7A.!!$R1 567
27 TraesCS7D01G381100 chr7A 367000848 367001475 627 True 667.000000 667 86.054000 2176 2798 1 chr7A.!!$R2 622
28 TraesCS7D01G381100 chr4D 55290940 55291663 723 False 941.000000 941 90.621000 2152 2853 1 chr4D.!!$F2 701
29 TraesCS7D01G381100 chr4D 360948590 360949265 675 True 682.000000 682 84.840000 2152 2868 1 chr4D.!!$R2 716
30 TraesCS7D01G381100 chr4B 216795633 216796344 711 True 821.000000 821 87.569000 2152 2868 1 chr4B.!!$R4 716
31 TraesCS7D01G381100 chr4B 16377601 16378162 561 False 577.000000 577 85.340000 177 743 1 chr4B.!!$F1 566
32 TraesCS7D01G381100 chr3B 398584174 398584759 585 False 688.000000 688 88.514000 177 743 1 chr3B.!!$F1 566
33 TraesCS7D01G381100 chr2A 587280521 587281238 717 True 549.000000 549 81.157000 2152 2868 1 chr2A.!!$R1 716

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.108186 TGCATCTTGGTGAGCGTAGG 60.108 55.0 0.00 0.0 0.00 3.18 F
1118 1148 0.036010 ATCTTGGCCGTCTTCCACAG 60.036 55.0 0.00 0.0 32.45 3.66 F
2383 2667 0.616679 TAACCCTAGCCGCCTCTTGT 60.617 55.0 0.00 0.0 0.00 3.16 F
2551 2836 0.032815 TTTCGATCGTGTCTGCACCA 59.967 50.0 15.94 0.0 42.39 4.17 F
4193 4628 0.104409 ACCTTCCCTTCACCTCCACT 60.104 55.0 0.00 0.0 0.00 4.00 F
5124 8237 0.039978 CCAGGTAGCATCGTAGCTCG 60.040 60.0 7.58 0.0 45.26 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1263 1.144936 GTTGATGCGGGAGGAGAGG 59.855 63.158 0.0 0.0 0.00 3.69 R
2437 2721 0.876342 GGGTTGACGGAGATGCGATC 60.876 60.000 0.0 0.0 0.00 3.69 R
4174 4609 0.104409 AGTGGAGGTGAAGGGAAGGT 60.104 55.000 0.0 0.0 0.00 3.50 R
4427 4863 0.390603 CCCTGCGTGTAAACATCCGA 60.391 55.000 0.0 0.0 0.00 4.55 R
5177 8290 0.035036 TCCGTTTGTTATGACCGGCA 59.965 50.000 0.0 0.0 38.54 5.69 R
7117 12617 0.030908 GCAACCCGGTAGAGAGATCG 59.969 60.000 0.0 0.0 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.064079 TGATTTGGATCACGGCGAG 57.936 52.632 16.62 5.72 37.37 5.03
24 25 0.249120 TGATTTGGATCACGGCGAGT 59.751 50.000 16.62 0.00 37.37 4.18
25 26 1.478916 TGATTTGGATCACGGCGAGTA 59.521 47.619 16.62 0.00 37.37 2.59
26 27 1.859080 GATTTGGATCACGGCGAGTAC 59.141 52.381 16.62 4.40 32.33 2.73
27 28 0.457166 TTTGGATCACGGCGAGTACG 60.457 55.000 16.62 0.00 42.93 3.67
28 29 1.307355 TTGGATCACGGCGAGTACGA 61.307 55.000 16.62 1.74 42.66 3.43
29 30 1.298190 GGATCACGGCGAGTACGAC 60.298 63.158 16.62 0.00 45.02 4.34
30 31 1.712977 GGATCACGGCGAGTACGACT 61.713 60.000 16.62 0.00 46.46 4.18
31 32 0.316032 GATCACGGCGAGTACGACTC 60.316 60.000 16.62 0.00 46.46 3.36
32 33 1.712977 ATCACGGCGAGTACGACTCC 61.713 60.000 16.62 0.00 46.46 3.85
33 34 3.494336 ACGGCGAGTACGACTCCG 61.494 66.667 16.62 17.85 46.46 4.63
52 53 2.073056 CGTCATCCACGTTCATTGGAA 58.927 47.619 0.00 0.00 46.37 3.53
53 54 2.159707 CGTCATCCACGTTCATTGGAAC 60.160 50.000 0.00 0.00 46.37 3.62
71 72 2.331805 GCTTCCGCTCGCGATCTA 59.668 61.111 10.36 0.00 42.83 1.98
72 73 2.011881 GCTTCCGCTCGCGATCTAC 61.012 63.158 10.36 0.00 42.83 2.59
73 74 1.355563 CTTCCGCTCGCGATCTACA 59.644 57.895 10.36 0.00 42.83 2.74
74 75 0.248498 CTTCCGCTCGCGATCTACAA 60.248 55.000 10.36 0.00 42.83 2.41
75 76 0.248498 TTCCGCTCGCGATCTACAAG 60.248 55.000 10.36 0.00 42.83 3.16
76 77 1.658717 CCGCTCGCGATCTACAAGG 60.659 63.158 10.36 0.00 42.83 3.61
77 78 1.658717 CGCTCGCGATCTACAAGGG 60.659 63.158 10.36 0.00 42.83 3.95
78 79 1.437986 GCTCGCGATCTACAAGGGT 59.562 57.895 10.36 0.00 0.00 4.34
79 80 0.666913 GCTCGCGATCTACAAGGGTA 59.333 55.000 10.36 0.00 0.00 3.69
80 81 1.269998 GCTCGCGATCTACAAGGGTAT 59.730 52.381 10.36 0.00 0.00 2.73
81 82 2.922758 GCTCGCGATCTACAAGGGTATG 60.923 54.545 10.36 0.00 0.00 2.39
82 83 2.293677 CTCGCGATCTACAAGGGTATGT 59.706 50.000 10.36 0.00 37.32 2.29
83 84 3.479489 TCGCGATCTACAAGGGTATGTA 58.521 45.455 3.71 0.00 34.75 2.29
92 93 4.408182 ACAAGGGTATGTAGATGCACTC 57.592 45.455 0.00 0.00 25.83 3.51
93 94 3.134804 ACAAGGGTATGTAGATGCACTCC 59.865 47.826 0.00 0.00 25.83 3.85
94 95 3.336509 AGGGTATGTAGATGCACTCCT 57.663 47.619 0.00 0.00 0.00 3.69
95 96 3.658725 AGGGTATGTAGATGCACTCCTT 58.341 45.455 0.00 0.00 0.00 3.36
96 97 4.040755 AGGGTATGTAGATGCACTCCTTT 58.959 43.478 0.00 0.00 0.00 3.11
97 98 4.101741 AGGGTATGTAGATGCACTCCTTTC 59.898 45.833 0.00 0.00 0.00 2.62
98 99 4.381411 GGTATGTAGATGCACTCCTTTCC 58.619 47.826 0.00 0.00 0.00 3.13
99 100 3.567478 ATGTAGATGCACTCCTTTCCC 57.433 47.619 0.00 0.00 0.00 3.97
100 101 1.559682 TGTAGATGCACTCCTTTCCCC 59.440 52.381 0.00 0.00 0.00 4.81
101 102 1.840635 GTAGATGCACTCCTTTCCCCT 59.159 52.381 0.00 0.00 0.00 4.79
102 103 0.915364 AGATGCACTCCTTTCCCCTC 59.085 55.000 0.00 0.00 0.00 4.30
103 104 0.462759 GATGCACTCCTTTCCCCTCG 60.463 60.000 0.00 0.00 0.00 4.63
104 105 1.201429 ATGCACTCCTTTCCCCTCGT 61.201 55.000 0.00 0.00 0.00 4.18
105 106 1.375326 GCACTCCTTTCCCCTCGTT 59.625 57.895 0.00 0.00 0.00 3.85
106 107 0.955919 GCACTCCTTTCCCCTCGTTG 60.956 60.000 0.00 0.00 0.00 4.10
107 108 0.955919 CACTCCTTTCCCCTCGTTGC 60.956 60.000 0.00 0.00 0.00 4.17
108 109 1.128188 ACTCCTTTCCCCTCGTTGCT 61.128 55.000 0.00 0.00 0.00 3.91
109 110 0.902531 CTCCTTTCCCCTCGTTGCTA 59.097 55.000 0.00 0.00 0.00 3.49
110 111 0.902531 TCCTTTCCCCTCGTTGCTAG 59.097 55.000 0.00 0.00 0.00 3.42
111 112 0.613777 CCTTTCCCCTCGTTGCTAGT 59.386 55.000 0.00 0.00 0.00 2.57
112 113 1.829222 CCTTTCCCCTCGTTGCTAGTA 59.171 52.381 0.00 0.00 0.00 1.82
113 114 2.159085 CCTTTCCCCTCGTTGCTAGTAG 60.159 54.545 0.00 0.00 0.00 2.57
114 115 2.519771 TTCCCCTCGTTGCTAGTAGA 57.480 50.000 0.00 0.00 0.00 2.59
115 116 1.760192 TCCCCTCGTTGCTAGTAGAC 58.240 55.000 0.00 0.00 0.00 2.59
116 117 1.284198 TCCCCTCGTTGCTAGTAGACT 59.716 52.381 0.00 0.00 0.00 3.24
117 118 1.677052 CCCCTCGTTGCTAGTAGACTC 59.323 57.143 0.00 0.00 0.00 3.36
118 119 1.677052 CCCTCGTTGCTAGTAGACTCC 59.323 57.143 0.00 0.00 0.00 3.85
119 120 2.366533 CCTCGTTGCTAGTAGACTCCA 58.633 52.381 0.00 0.00 0.00 3.86
120 121 2.952978 CCTCGTTGCTAGTAGACTCCAT 59.047 50.000 0.00 0.00 0.00 3.41
121 122 4.135306 CCTCGTTGCTAGTAGACTCCATA 58.865 47.826 0.00 0.00 0.00 2.74
122 123 4.214545 CCTCGTTGCTAGTAGACTCCATAG 59.785 50.000 0.00 0.00 0.00 2.23
123 124 5.032327 TCGTTGCTAGTAGACTCCATAGA 57.968 43.478 0.00 0.00 0.00 1.98
124 125 5.622180 TCGTTGCTAGTAGACTCCATAGAT 58.378 41.667 0.00 0.00 0.00 1.98
125 126 5.470437 TCGTTGCTAGTAGACTCCATAGATG 59.530 44.000 0.00 0.00 0.00 2.90
126 127 5.465935 GTTGCTAGTAGACTCCATAGATGC 58.534 45.833 0.00 0.00 0.00 3.91
127 128 4.729868 TGCTAGTAGACTCCATAGATGCA 58.270 43.478 0.00 0.00 0.00 3.96
128 129 5.328565 TGCTAGTAGACTCCATAGATGCAT 58.671 41.667 0.00 0.00 0.00 3.96
129 130 5.417266 TGCTAGTAGACTCCATAGATGCATC 59.583 44.000 19.37 19.37 0.00 3.91
130 131 5.652014 GCTAGTAGACTCCATAGATGCATCT 59.348 44.000 30.85 30.85 40.86 2.90
131 132 6.152661 GCTAGTAGACTCCATAGATGCATCTT 59.847 42.308 32.94 18.09 38.32 2.40
132 133 6.343716 AGTAGACTCCATAGATGCATCTTG 57.656 41.667 32.94 26.28 38.32 3.02
133 134 4.620589 AGACTCCATAGATGCATCTTGG 57.379 45.455 32.94 32.05 38.32 3.61
134 135 3.972638 AGACTCCATAGATGCATCTTGGT 59.027 43.478 33.33 24.71 38.32 3.67
135 136 4.063689 GACTCCATAGATGCATCTTGGTG 58.936 47.826 33.33 32.47 38.32 4.17
136 137 3.713248 ACTCCATAGATGCATCTTGGTGA 59.287 43.478 35.34 26.11 38.32 4.02
137 138 4.202336 ACTCCATAGATGCATCTTGGTGAG 60.202 45.833 35.34 31.32 38.32 3.51
138 139 2.812591 CCATAGATGCATCTTGGTGAGC 59.187 50.000 32.94 0.94 38.32 4.26
139 140 2.229675 TAGATGCATCTTGGTGAGCG 57.770 50.000 32.94 0.00 38.32 5.03
140 141 0.251354 AGATGCATCTTGGTGAGCGT 59.749 50.000 23.75 0.00 31.97 5.07
141 142 1.482182 AGATGCATCTTGGTGAGCGTA 59.518 47.619 23.75 0.00 31.97 4.42
142 143 1.863454 GATGCATCTTGGTGAGCGTAG 59.137 52.381 19.70 0.00 0.00 3.51
143 144 0.108186 TGCATCTTGGTGAGCGTAGG 60.108 55.000 0.00 0.00 0.00 3.18
144 145 0.175760 GCATCTTGGTGAGCGTAGGA 59.824 55.000 0.00 0.00 0.00 2.94
145 146 1.405526 GCATCTTGGTGAGCGTAGGAA 60.406 52.381 0.00 0.00 0.00 3.36
146 147 2.935238 GCATCTTGGTGAGCGTAGGAAA 60.935 50.000 0.00 0.00 0.00 3.13
147 148 3.334691 CATCTTGGTGAGCGTAGGAAAA 58.665 45.455 0.00 0.00 0.00 2.29
148 149 3.695830 TCTTGGTGAGCGTAGGAAAAT 57.304 42.857 0.00 0.00 0.00 1.82
149 150 4.015872 TCTTGGTGAGCGTAGGAAAATT 57.984 40.909 0.00 0.00 0.00 1.82
150 151 4.394729 TCTTGGTGAGCGTAGGAAAATTT 58.605 39.130 0.00 0.00 0.00 1.82
151 152 4.825085 TCTTGGTGAGCGTAGGAAAATTTT 59.175 37.500 2.28 2.28 0.00 1.82
152 153 5.998981 TCTTGGTGAGCGTAGGAAAATTTTA 59.001 36.000 2.75 0.00 0.00 1.52
153 154 6.487331 TCTTGGTGAGCGTAGGAAAATTTTAA 59.513 34.615 2.75 0.00 0.00 1.52
154 155 6.636562 TGGTGAGCGTAGGAAAATTTTAAA 57.363 33.333 2.75 0.00 0.00 1.52
155 156 7.040473 TGGTGAGCGTAGGAAAATTTTAAAA 57.960 32.000 2.75 2.51 0.00 1.52
156 157 7.662897 TGGTGAGCGTAGGAAAATTTTAAAAT 58.337 30.769 7.64 7.64 0.00 1.82
157 158 8.145122 TGGTGAGCGTAGGAAAATTTTAAAATT 58.855 29.630 18.40 18.40 40.15 1.82
158 159 9.628746 GGTGAGCGTAGGAAAATTTTAAAATTA 57.371 29.630 23.01 7.61 37.62 1.40
162 163 9.869757 AGCGTAGGAAAATTTTAAAATTATGCT 57.130 25.926 23.01 22.85 37.62 3.79
263 266 9.435570 ACCCACAAATCACTATACTTATAGAGT 57.564 33.333 9.79 0.00 42.55 3.24
284 287 7.213678 AGAGTATTGCAAGAGCTAATCTAACC 58.786 38.462 4.94 0.00 42.74 2.85
305 308 5.824421 ACCATGAGAGATGAAAGGACAAAT 58.176 37.500 0.00 0.00 0.00 2.32
318 321 7.334858 TGAAAGGACAAATTTGCTAACCTTTT 58.665 30.769 30.03 21.86 43.30 2.27
407 410 6.001449 TCAAGAGGAAGAGGAAGAAAACAA 57.999 37.500 0.00 0.00 0.00 2.83
412 415 5.766590 AGGAAGAGGAAGAAAACAAAGGAA 58.233 37.500 0.00 0.00 0.00 3.36
432 439 1.773541 AGGGGAAAGGGGAAGAACAT 58.226 50.000 0.00 0.00 0.00 2.71
458 466 0.602905 CGGGCTCGACAAAGAGGTTT 60.603 55.000 0.00 0.00 38.63 3.27
459 467 1.337447 CGGGCTCGACAAAGAGGTTTA 60.337 52.381 0.00 0.00 38.63 2.01
460 468 2.677037 CGGGCTCGACAAAGAGGTTTAT 60.677 50.000 0.00 0.00 38.63 1.40
461 469 3.429822 CGGGCTCGACAAAGAGGTTTATA 60.430 47.826 0.00 0.00 38.63 0.98
533 541 2.758979 GTGAATCTCTAGTCCCGGTTCA 59.241 50.000 0.00 0.00 0.00 3.18
544 552 3.520317 AGTCCCGGTTCATATAACCAACA 59.480 43.478 0.00 0.00 40.28 3.33
608 616 1.541147 CCACCACGTCTTTAGTACCGA 59.459 52.381 0.00 0.00 0.00 4.69
655 664 2.499205 CCGCCGCCTAGTCATTGA 59.501 61.111 0.00 0.00 0.00 2.57
657 666 0.742990 CCGCCGCCTAGTCATTGAAA 60.743 55.000 0.00 0.00 0.00 2.69
660 669 1.006832 CCGCCTAGTCATTGAAACCG 58.993 55.000 0.00 0.00 0.00 4.44
661 670 1.404986 CCGCCTAGTCATTGAAACCGA 60.405 52.381 0.00 0.00 0.00 4.69
699 708 1.944709 GTGCCGGTTCAGTTACAAACT 59.055 47.619 1.90 0.00 44.06 2.66
714 723 7.686434 AGTTACAAACTGGGACTATAATGTGT 58.314 34.615 0.00 0.00 41.01 3.72
752 761 6.206634 CCTTTTTCTACTAGTGAACAATGGCA 59.793 38.462 5.39 0.00 0.00 4.92
807 816 6.565234 AGTCGATTACATGGAGTTTAGTCTG 58.435 40.000 0.00 0.00 0.00 3.51
813 822 4.973168 ACATGGAGTTTAGTCTGCTGAAA 58.027 39.130 0.00 0.00 0.00 2.69
824 833 2.290641 GTCTGCTGAAAACACACCGAAT 59.709 45.455 0.00 0.00 0.00 3.34
825 834 2.948979 TCTGCTGAAAACACACCGAATT 59.051 40.909 0.00 0.00 0.00 2.17
852 861 4.222145 ACCTTAATCGAGGCACTAAACTCA 59.778 41.667 0.00 0.00 41.55 3.41
866 875 5.176774 CACTAAACTCACTTGCATCGTTACA 59.823 40.000 0.00 0.00 0.00 2.41
872 881 3.055747 TCACTTGCATCGTTACACCCATA 60.056 43.478 0.00 0.00 0.00 2.74
949 965 2.501881 CGGTTACACGCAACAAATAGC 58.498 47.619 0.00 0.00 0.00 2.97
1118 1148 0.036010 ATCTTGGCCGTCTTCCACAG 60.036 55.000 0.00 0.00 32.45 3.66
1384 1417 1.278238 CTACAAACTCGATCCCGTGC 58.722 55.000 0.00 0.00 37.05 5.34
1393 1426 1.691976 TCGATCCCGTGCTAATTCCAT 59.308 47.619 0.00 0.00 37.05 3.41
1439 1475 7.585210 GTCGTACAGAGGTTTATTTTTGTGTTC 59.415 37.037 0.00 0.00 0.00 3.18
1534 1572 5.876357 TGATTTTTGGTTCTGGCTAGTACT 58.124 37.500 6.79 0.00 0.00 2.73
1535 1573 5.938125 TGATTTTTGGTTCTGGCTAGTACTC 59.062 40.000 0.00 0.00 0.00 2.59
1536 1574 5.562298 TTTTTGGTTCTGGCTAGTACTCT 57.438 39.130 0.00 0.00 0.00 3.24
1537 1575 4.803098 TTTGGTTCTGGCTAGTACTCTC 57.197 45.455 0.00 0.00 0.00 3.20
1540 1578 4.417437 TGGTTCTGGCTAGTACTCTCTTT 58.583 43.478 0.00 0.00 0.00 2.52
1541 1579 4.220821 TGGTTCTGGCTAGTACTCTCTTTG 59.779 45.833 0.00 0.00 0.00 2.77
1542 1580 4.221041 GGTTCTGGCTAGTACTCTCTTTGT 59.779 45.833 0.00 0.00 0.00 2.83
1543 1581 5.279556 GGTTCTGGCTAGTACTCTCTTTGTT 60.280 44.000 0.00 0.00 0.00 2.83
1544 1582 5.646577 TCTGGCTAGTACTCTCTTTGTTC 57.353 43.478 0.00 0.00 0.00 3.18
1545 1583 4.463186 TCTGGCTAGTACTCTCTTTGTTCC 59.537 45.833 0.00 0.00 0.00 3.62
1546 1584 3.514309 TGGCTAGTACTCTCTTTGTTCCC 59.486 47.826 0.00 0.00 0.00 3.97
1547 1585 3.514309 GGCTAGTACTCTCTTTGTTCCCA 59.486 47.826 0.00 0.00 0.00 4.37
1548 1586 4.020485 GGCTAGTACTCTCTTTGTTCCCAA 60.020 45.833 0.00 0.00 0.00 4.12
1549 1587 5.512576 GGCTAGTACTCTCTTTGTTCCCAAA 60.513 44.000 0.00 0.00 38.22 3.28
1550 1588 6.174049 GCTAGTACTCTCTTTGTTCCCAAAT 58.826 40.000 0.00 0.00 39.72 2.32
1551 1589 6.314152 GCTAGTACTCTCTTTGTTCCCAAATC 59.686 42.308 0.00 0.00 39.72 2.17
1552 1590 6.441088 AGTACTCTCTTTGTTCCCAAATCT 57.559 37.500 0.00 0.00 39.72 2.40
1553 1591 7.554959 AGTACTCTCTTTGTTCCCAAATCTA 57.445 36.000 0.00 0.00 39.72 1.98
1554 1592 7.616313 AGTACTCTCTTTGTTCCCAAATCTAG 58.384 38.462 0.00 0.00 39.72 2.43
1555 1593 6.441088 ACTCTCTTTGTTCCCAAATCTAGT 57.559 37.500 0.00 0.00 39.72 2.57
1556 1594 6.468543 ACTCTCTTTGTTCCCAAATCTAGTC 58.531 40.000 0.00 0.00 39.72 2.59
1557 1595 6.271159 ACTCTCTTTGTTCCCAAATCTAGTCT 59.729 38.462 0.00 0.00 39.72 3.24
1558 1596 7.079451 TCTCTTTGTTCCCAAATCTAGTCTT 57.921 36.000 0.00 0.00 39.72 3.01
1559 1597 7.518188 TCTCTTTGTTCCCAAATCTAGTCTTT 58.482 34.615 0.00 0.00 39.72 2.52
1560 1598 7.998964 TCTCTTTGTTCCCAAATCTAGTCTTTT 59.001 33.333 0.00 0.00 39.72 2.27
1561 1599 8.533569 TCTTTGTTCCCAAATCTAGTCTTTTT 57.466 30.769 0.00 0.00 39.72 1.94
1562 1600 9.635404 TCTTTGTTCCCAAATCTAGTCTTTTTA 57.365 29.630 0.00 0.00 39.72 1.52
1563 1601 9.899226 CTTTGTTCCCAAATCTAGTCTTTTTAG 57.101 33.333 0.00 0.00 39.72 1.85
1564 1602 9.635404 TTTGTTCCCAAATCTAGTCTTTTTAGA 57.365 29.630 0.00 0.00 35.67 2.10
1565 1603 8.848474 TGTTCCCAAATCTAGTCTTTTTAGAG 57.152 34.615 0.00 0.00 31.17 2.43
1566 1604 8.656806 TGTTCCCAAATCTAGTCTTTTTAGAGA 58.343 33.333 0.00 0.00 31.17 3.10
1567 1605 9.674068 GTTCCCAAATCTAGTCTTTTTAGAGAT 57.326 33.333 0.00 0.00 31.17 2.75
1578 1616 8.171164 AGTCTTTTTAGAGATTTCAACAAGGG 57.829 34.615 0.00 0.00 0.00 3.95
1579 1617 7.998964 AGTCTTTTTAGAGATTTCAACAAGGGA 59.001 33.333 0.00 0.00 0.00 4.20
1580 1618 8.076781 GTCTTTTTAGAGATTTCAACAAGGGAC 58.923 37.037 0.00 0.00 0.00 4.46
1582 1620 9.284968 CTTTTTAGAGATTTCAACAAGGGACTA 57.715 33.333 0.00 0.00 38.49 2.59
1583 1621 8.617290 TTTTAGAGATTTCAACAAGGGACTAC 57.383 34.615 0.00 0.00 38.49 2.73
1584 1622 5.825593 AGAGATTTCAACAAGGGACTACA 57.174 39.130 0.00 0.00 38.49 2.74
1585 1623 6.380079 AGAGATTTCAACAAGGGACTACAT 57.620 37.500 0.00 0.00 38.49 2.29
1586 1624 7.496346 AGAGATTTCAACAAGGGACTACATA 57.504 36.000 0.00 0.00 38.49 2.29
1587 1625 7.331791 AGAGATTTCAACAAGGGACTACATAC 58.668 38.462 0.00 0.00 38.49 2.39
1588 1626 6.106673 AGATTTCAACAAGGGACTACATACG 58.893 40.000 0.00 0.00 38.49 3.06
1589 1627 5.471556 TTTCAACAAGGGACTACATACGA 57.528 39.130 0.00 0.00 38.49 3.43
1590 1628 5.471556 TTCAACAAGGGACTACATACGAA 57.528 39.130 0.00 0.00 38.49 3.85
1591 1629 5.471556 TCAACAAGGGACTACATACGAAA 57.528 39.130 0.00 0.00 38.49 3.46
1592 1630 6.045072 TCAACAAGGGACTACATACGAAAT 57.955 37.500 0.00 0.00 38.49 2.17
1593 1631 7.172868 TCAACAAGGGACTACATACGAAATA 57.827 36.000 0.00 0.00 38.49 1.40
1594 1632 7.613585 TCAACAAGGGACTACATACGAAATAA 58.386 34.615 0.00 0.00 38.49 1.40
1595 1633 8.095792 TCAACAAGGGACTACATACGAAATAAA 58.904 33.333 0.00 0.00 38.49 1.40
1596 1634 8.723311 CAACAAGGGACTACATACGAAATAAAA 58.277 33.333 0.00 0.00 38.49 1.52
1597 1635 8.851541 ACAAGGGACTACATACGAAATAAAAA 57.148 30.769 0.00 0.00 38.49 1.94
1598 1636 9.457436 ACAAGGGACTACATACGAAATAAAAAT 57.543 29.630 0.00 0.00 38.49 1.82
1599 1637 9.716507 CAAGGGACTACATACGAAATAAAAATG 57.283 33.333 0.00 0.00 38.49 2.32
1600 1638 9.675464 AAGGGACTACATACGAAATAAAAATGA 57.325 29.630 0.00 0.00 38.49 2.57
1601 1639 9.326413 AGGGACTACATACGAAATAAAAATGAG 57.674 33.333 0.00 0.00 36.02 2.90
1602 1640 9.106070 GGGACTACATACGAAATAAAAATGAGT 57.894 33.333 0.00 0.00 0.00 3.41
1603 1641 9.916397 GGACTACATACGAAATAAAAATGAGTG 57.084 33.333 0.00 0.00 0.00 3.51
1655 1693 7.615582 ACATCTGTATGTTGTAGTCCATTTG 57.384 36.000 0.00 0.00 44.07 2.32
1656 1694 7.394016 ACATCTGTATGTTGTAGTCCATTTGA 58.606 34.615 0.00 0.00 44.07 2.69
1657 1695 7.882791 ACATCTGTATGTTGTAGTCCATTTGAA 59.117 33.333 0.00 0.00 44.07 2.69
1658 1696 8.729756 CATCTGTATGTTGTAGTCCATTTGAAA 58.270 33.333 0.00 0.00 0.00 2.69
1659 1697 8.862325 TCTGTATGTTGTAGTCCATTTGAAAT 57.138 30.769 0.00 0.00 0.00 2.17
1660 1698 9.295825 TCTGTATGTTGTAGTCCATTTGAAATT 57.704 29.630 0.00 0.00 0.00 1.82
1661 1699 9.912634 CTGTATGTTGTAGTCCATTTGAAATTT 57.087 29.630 0.00 0.00 0.00 1.82
1662 1700 9.906660 TGTATGTTGTAGTCCATTTGAAATTTC 57.093 29.630 11.41 11.41 0.00 2.17
1672 1710 9.764363 AGTCCATTTGAAATTTCTAAAAAGACC 57.236 29.630 23.13 14.15 0.00 3.85
1673 1711 9.764363 GTCCATTTGAAATTTCTAAAAAGACCT 57.236 29.630 18.64 0.00 0.00 3.85
1691 1729 8.515695 AAAGACCTATATTTAAAAACGGAGGG 57.484 34.615 0.00 0.00 0.00 4.30
1692 1730 7.441903 AGACCTATATTTAAAAACGGAGGGA 57.558 36.000 0.00 0.00 0.00 4.20
1693 1731 7.506971 AGACCTATATTTAAAAACGGAGGGAG 58.493 38.462 0.00 0.00 0.00 4.30
1694 1732 7.126879 AGACCTATATTTAAAAACGGAGGGAGT 59.873 37.037 0.00 0.00 0.00 3.85
1695 1733 8.322905 ACCTATATTTAAAAACGGAGGGAGTA 57.677 34.615 0.00 0.00 0.00 2.59
1696 1734 8.206867 ACCTATATTTAAAAACGGAGGGAGTAC 58.793 37.037 0.00 0.00 0.00 2.73
1697 1735 8.206189 CCTATATTTAAAAACGGAGGGAGTACA 58.794 37.037 0.00 0.00 0.00 2.90
1698 1736 9.774413 CTATATTTAAAAACGGAGGGAGTACAT 57.226 33.333 0.00 0.00 0.00 2.29
1700 1738 9.774413 ATATTTAAAAACGGAGGGAGTACATAG 57.226 33.333 0.00 0.00 0.00 2.23
1701 1739 6.610075 TTAAAAACGGAGGGAGTACATAGT 57.390 37.500 0.00 0.00 0.00 2.12
1702 1740 7.716799 TTAAAAACGGAGGGAGTACATAGTA 57.283 36.000 0.00 0.00 0.00 1.82
1703 1741 6.803366 AAAAACGGAGGGAGTACATAGTAT 57.197 37.500 0.00 0.00 0.00 2.12
1704 1742 7.902920 AAAAACGGAGGGAGTACATAGTATA 57.097 36.000 0.00 0.00 0.00 1.47
1705 1743 8.488308 AAAAACGGAGGGAGTACATAGTATAT 57.512 34.615 0.00 0.00 0.00 0.86
1706 1744 7.463961 AAACGGAGGGAGTACATAGTATATG 57.536 40.000 0.00 0.00 0.00 1.78
1781 1819 8.969121 TCATCATGTCATTTGTTTTCACATAC 57.031 30.769 0.00 0.00 31.06 2.39
1867 1908 7.759489 AGGAAATACAGAGCACACAAAATTA 57.241 32.000 0.00 0.00 0.00 1.40
1888 1929 1.904287 TTGTTCTGCTGCCCGTAATT 58.096 45.000 0.00 0.00 0.00 1.40
1898 1939 6.993308 TCTGCTGCCCGTAATTGTTATATTTA 59.007 34.615 0.00 0.00 0.00 1.40
2017 2058 9.167311 GATACTGTTAAATGGACTGAACTTCAT 57.833 33.333 0.00 0.00 0.00 2.57
2055 2096 8.451908 ACTATTTGATAGCAGTTAAATGGACC 57.548 34.615 4.91 0.00 36.30 4.46
2078 2145 6.315393 ACCGAACTTCAAATATTGACGCTAAT 59.685 34.615 0.00 0.00 39.87 1.73
2096 2163 6.928492 ACGCTAATTGAAAATTTGTTGGTCAT 59.072 30.769 0.00 0.00 0.00 3.06
2104 2171 7.440198 TGAAAATTTGTTGGTCATCTTATGCA 58.560 30.769 0.00 0.00 0.00 3.96
2109 2176 5.823209 TGTTGGTCATCTTATGCATTGAG 57.177 39.130 3.54 3.80 0.00 3.02
2161 2444 5.533528 ACTTGGTTTAACTGTGTTATGACCC 59.466 40.000 14.88 5.42 0.00 4.46
2170 2453 5.676552 ACTGTGTTATGACCCGCATATTAA 58.323 37.500 0.00 0.00 39.15 1.40
2258 2541 4.084013 CCCATCGTTATTAGGATCGTTTGC 60.084 45.833 0.00 0.00 0.00 3.68
2316 2599 9.378504 AGAGGAGATGTATCAATCTAATCAAGT 57.621 33.333 0.00 0.00 37.03 3.16
2344 2627 8.947055 AAAATAATCATTATTTGCTCGGCTTT 57.053 26.923 14.85 0.00 43.14 3.51
2383 2667 0.616679 TAACCCTAGCCGCCTCTTGT 60.617 55.000 0.00 0.00 0.00 3.16
2462 2746 2.182858 ATCTCCGTCAACCCTCCCCT 62.183 60.000 0.00 0.00 0.00 4.79
2465 2749 1.063654 TCCGTCAACCCTCCCCTTTT 61.064 55.000 0.00 0.00 0.00 2.27
2477 2762 3.593096 CTCCCCTTTTCGTACAACCTAC 58.407 50.000 0.00 0.00 0.00 3.18
2489 2774 0.899720 CAACCTACGCCCTAGACCAA 59.100 55.000 0.00 0.00 0.00 3.67
2534 2819 2.463752 TGGTATCAGGTAGCTCGGTTT 58.536 47.619 0.00 0.00 0.00 3.27
2540 2825 0.381089 AGGTAGCTCGGTTTCGATCG 59.619 55.000 9.36 9.36 45.04 3.69
2546 2831 1.260206 CTCGGTTTCGATCGTGTCTG 58.740 55.000 15.94 11.07 45.04 3.51
2551 2836 0.032815 TTTCGATCGTGTCTGCACCA 59.967 50.000 15.94 0.00 42.39 4.17
2561 2846 2.195683 CTGCACCACCACCCAACT 59.804 61.111 0.00 0.00 0.00 3.16
2563 2848 2.194597 GCACCACCACCCAACTCA 59.805 61.111 0.00 0.00 0.00 3.41
2567 2852 2.978010 CACCACCCAACTCACCGC 60.978 66.667 0.00 0.00 0.00 5.68
2569 2854 1.839747 ACCACCCAACTCACCGCTA 60.840 57.895 0.00 0.00 0.00 4.26
2571 2856 1.375523 CACCCAACTCACCGCTACC 60.376 63.158 0.00 0.00 0.00 3.18
2573 2858 2.125673 CCAACTCACCGCTACCCG 60.126 66.667 0.00 0.00 0.00 5.28
2601 2886 3.474570 GCCGGTGCCTCTCTCCAT 61.475 66.667 1.90 0.00 0.00 3.41
2629 2914 3.075005 GCTCTCCCCACCGCACTA 61.075 66.667 0.00 0.00 0.00 2.74
2642 2942 1.215647 GCACTACTGGACTCCACCG 59.784 63.158 0.00 0.00 0.00 4.94
2650 2950 3.311110 GACTCCACCGGCCAGACA 61.311 66.667 0.00 0.00 0.00 3.41
2688 2988 2.499685 GCCCGTCGCCATCTACTT 59.500 61.111 0.00 0.00 0.00 2.24
2689 2989 1.883084 GCCCGTCGCCATCTACTTG 60.883 63.158 0.00 0.00 0.00 3.16
2716 3016 0.326618 AGATGACCGGGGTCCTCAAT 60.327 55.000 20.51 6.94 43.97 2.57
2728 3028 1.546476 GTCCTCAATGACCTCGTCACT 59.454 52.381 0.00 0.00 45.65 3.41
3589 4022 2.858974 CCCCACTCCACCCTGGTT 60.859 66.667 0.00 0.00 39.03 3.67
3665 4098 3.090219 GCAGGGAGGCGTACCGATT 62.090 63.158 1.00 0.00 42.76 3.34
3709 4142 2.509422 GTCCCCAATACCGGCCTC 59.491 66.667 0.00 0.00 0.00 4.70
3735 4168 4.241555 GATCATCGCCGCCACCCT 62.242 66.667 0.00 0.00 0.00 4.34
3773 4206 3.390521 CAGGCGGCACCCACTCTA 61.391 66.667 13.08 0.00 40.58 2.43
3851 4285 4.235762 GCGCCCCAATCCTCGCTA 62.236 66.667 0.00 0.00 43.70 4.26
3993 4428 1.166531 GCAGTTCTTTCACGGGCAGT 61.167 55.000 0.00 0.00 0.00 4.40
4087 4522 3.842923 CGAGCAGGACGAGGGCAT 61.843 66.667 0.00 0.00 0.00 4.40
4135 4570 1.884235 CTCTGCCTCCTTCGTTTTGT 58.116 50.000 0.00 0.00 0.00 2.83
4193 4628 0.104409 ACCTTCCCTTCACCTCCACT 60.104 55.000 0.00 0.00 0.00 4.00
4205 4640 2.127708 ACCTCCACTGTTCAGGACTTT 58.872 47.619 8.48 0.00 0.00 2.66
4248 4684 4.129737 CCACTCGTCGGGCGTGAT 62.130 66.667 11.27 0.00 42.13 3.06
4354 4790 1.119684 AGACGGCCATGTACTATGCA 58.880 50.000 2.24 0.00 0.00 3.96
4426 4862 2.978824 GCTGGGTCGCTACCTTGA 59.021 61.111 7.43 0.00 45.95 3.02
4427 4863 1.522569 GCTGGGTCGCTACCTTGAT 59.477 57.895 7.43 0.00 45.95 2.57
4437 4873 3.382227 TCGCTACCTTGATCGGATGTTTA 59.618 43.478 0.00 0.00 0.00 2.01
4705 5148 2.427453 GCTAGTTGATCACCTCGAGGAA 59.573 50.000 37.69 24.12 38.94 3.36
4836 5280 8.329502 GCCCAGGTTATCTTATCATTATTAGGT 58.670 37.037 0.00 0.00 0.00 3.08
4964 8073 1.338020 CATTATTTGCTCGGCTTCCCC 59.662 52.381 0.00 0.00 0.00 4.81
5084 8197 1.489560 CCGTCAACCCTCCCCTTTCT 61.490 60.000 0.00 0.00 0.00 2.52
5113 8226 1.896465 CTATGCCCTAGACCAGGTAGC 59.104 57.143 0.00 0.00 43.80 3.58
5117 8230 0.962489 CCCTAGACCAGGTAGCATCG 59.038 60.000 0.00 0.00 43.80 3.84
5124 8237 0.039978 CCAGGTAGCATCGTAGCTCG 60.040 60.000 7.58 0.00 45.26 5.03
5128 8241 3.058155 CAGGTAGCATCGTAGCTCGTATT 60.058 47.826 7.58 0.00 45.26 1.89
5129 8242 4.153655 CAGGTAGCATCGTAGCTCGTATTA 59.846 45.833 7.58 0.00 45.26 0.98
5130 8243 4.758674 AGGTAGCATCGTAGCTCGTATTAA 59.241 41.667 7.58 0.00 45.26 1.40
5131 8244 5.415077 AGGTAGCATCGTAGCTCGTATTAAT 59.585 40.000 7.58 0.00 45.26 1.40
5132 8245 5.512082 GGTAGCATCGTAGCTCGTATTAATG 59.488 44.000 7.58 0.00 45.26 1.90
5133 8246 5.372547 AGCATCGTAGCTCGTATTAATGA 57.627 39.130 0.00 0.00 42.18 2.57
5134 8247 5.955488 AGCATCGTAGCTCGTATTAATGAT 58.045 37.500 0.00 0.00 42.18 2.45
5135 8248 7.085052 AGCATCGTAGCTCGTATTAATGATA 57.915 36.000 0.00 0.00 42.18 2.15
5136 8249 7.535997 AGCATCGTAGCTCGTATTAATGATAA 58.464 34.615 0.00 0.00 42.18 1.75
5137 8250 7.698550 AGCATCGTAGCTCGTATTAATGATAAG 59.301 37.037 0.00 0.00 42.18 1.73
5138 8251 7.696872 GCATCGTAGCTCGTATTAATGATAAGA 59.303 37.037 0.00 0.00 40.80 2.10
5139 8252 9.723447 CATCGTAGCTCGTATTAATGATAAGAT 57.277 33.333 0.00 0.00 40.80 2.40
5148 8261 9.431887 TCGTATTAATGATAAGATAACTTGGGC 57.568 33.333 0.00 0.00 37.53 5.36
5149 8262 8.665685 CGTATTAATGATAAGATAACTTGGGCC 58.334 37.037 0.00 0.00 37.53 5.80
5150 8263 9.515226 GTATTAATGATAAGATAACTTGGGCCA 57.485 33.333 0.00 0.00 37.53 5.36
5154 8267 8.409358 AATGATAAGATAACTTGGGCCATAAC 57.591 34.615 7.26 0.00 37.53 1.89
5155 8268 7.149202 TGATAAGATAACTTGGGCCATAACT 57.851 36.000 7.26 0.00 37.53 2.24
5156 8269 7.224297 TGATAAGATAACTTGGGCCATAACTC 58.776 38.462 7.26 1.02 37.53 3.01
5157 8270 5.450818 AAGATAACTTGGGCCATAACTCA 57.549 39.130 7.26 0.00 34.80 3.41
5158 8271 4.781934 AGATAACTTGGGCCATAACTCAC 58.218 43.478 7.26 0.00 0.00 3.51
5159 8272 4.475016 AGATAACTTGGGCCATAACTCACT 59.525 41.667 7.26 0.00 0.00 3.41
5160 8273 2.496899 ACTTGGGCCATAACTCACTG 57.503 50.000 7.26 0.00 0.00 3.66
5161 8274 1.004745 ACTTGGGCCATAACTCACTGG 59.995 52.381 7.26 0.00 35.53 4.00
5162 8275 0.331278 TTGGGCCATAACTCACTGGG 59.669 55.000 7.26 0.00 32.90 4.45
5166 8279 2.710096 GCCATAACTCACTGGGCTAA 57.290 50.000 0.00 0.00 41.39 3.09
5167 8280 2.999331 GCCATAACTCACTGGGCTAAA 58.001 47.619 0.00 0.00 41.39 1.85
5168 8281 2.683362 GCCATAACTCACTGGGCTAAAC 59.317 50.000 0.00 0.00 41.39 2.01
5169 8282 3.279434 CCATAACTCACTGGGCTAAACC 58.721 50.000 0.00 0.00 37.93 3.27
5181 8294 2.433436 GGCTAAACCCCTAATATGCCG 58.567 52.381 0.00 0.00 0.00 5.69
5182 8295 2.433436 GCTAAACCCCTAATATGCCGG 58.567 52.381 0.00 0.00 0.00 6.13
5183 8296 2.224695 GCTAAACCCCTAATATGCCGGT 60.225 50.000 1.90 0.00 0.00 5.28
5184 8297 2.651382 AAACCCCTAATATGCCGGTC 57.349 50.000 1.90 0.00 0.00 4.79
5185 8298 1.513858 AACCCCTAATATGCCGGTCA 58.486 50.000 1.90 1.38 0.00 4.02
5186 8299 1.742308 ACCCCTAATATGCCGGTCAT 58.258 50.000 14.43 14.43 39.17 3.06
5187 8300 2.910544 ACCCCTAATATGCCGGTCATA 58.089 47.619 17.22 17.22 41.52 2.15
5188 8301 3.253220 ACCCCTAATATGCCGGTCATAA 58.747 45.455 18.34 6.45 40.73 1.90
5189 8302 3.008704 ACCCCTAATATGCCGGTCATAAC 59.991 47.826 18.34 0.00 40.73 1.89
5190 8303 3.008594 CCCCTAATATGCCGGTCATAACA 59.991 47.826 18.34 10.64 40.73 2.41
5191 8304 4.505918 CCCCTAATATGCCGGTCATAACAA 60.506 45.833 18.34 9.08 40.73 2.83
5192 8305 5.067273 CCCTAATATGCCGGTCATAACAAA 58.933 41.667 18.34 2.72 40.73 2.83
5193 8306 5.048991 CCCTAATATGCCGGTCATAACAAAC 60.049 44.000 18.34 0.00 40.73 2.93
5194 8307 4.545823 AATATGCCGGTCATAACAAACG 57.454 40.909 18.34 0.00 40.73 3.60
5225 8338 7.692460 TGATTTCATCAGAGTAATGCAAAGT 57.308 32.000 0.00 0.00 33.59 2.66
5302 8459 0.881118 TTCGCAATGCCTTGTTCTCC 59.119 50.000 0.00 0.00 34.69 3.71
5307 8464 2.231964 GCAATGCCTTGTTCTCCATTCA 59.768 45.455 3.59 0.00 34.69 2.57
5357 8514 3.501828 TCGTTATTTGTCAAGCTGCACAT 59.498 39.130 1.02 0.00 0.00 3.21
5413 8571 4.914177 AATTGAACATTTTCCATGCCCT 57.086 36.364 0.00 0.00 0.00 5.19
5458 8617 0.519077 GTTTGAAGAGCCTTCGCCTG 59.481 55.000 9.47 0.00 34.57 4.85
5494 8653 0.385598 TCTCACTCGACGAGTTTGCG 60.386 55.000 27.28 16.18 41.37 4.85
5570 8729 4.664150 GAGCTACTAGTGGATTGCTCTT 57.336 45.455 10.90 0.00 42.28 2.85
5655 8814 6.542821 TCAGGATGAACAAACAATACTTCCT 58.457 36.000 0.00 0.00 45.97 3.36
5703 8862 3.426309 ATGCCGAGGGGATTGCAGG 62.426 63.158 0.00 0.00 37.12 4.85
5734 8893 3.177920 CGCTCACTGCAGCTCGTC 61.178 66.667 15.27 0.00 43.06 4.20
5841 9000 0.437295 GTCAAAATGGACGACGACGG 59.563 55.000 12.58 0.00 44.46 4.79
5917 9076 1.422950 GCGCCCGTATCAAAACGCTA 61.423 55.000 0.00 0.00 42.81 4.26
5927 9086 0.794473 CAAAACGCTACGACTTCCCC 59.206 55.000 0.00 0.00 0.00 4.81
5929 9088 1.809567 AAACGCTACGACTTCCCCGT 61.810 55.000 0.00 0.00 43.26 5.28
5939 9098 3.338126 CTTCCCCGTGACTCGACCG 62.338 68.421 0.00 0.00 42.86 4.79
5978 9137 0.036388 TCAAAGCCCTAGGTTCGCTG 60.036 55.000 11.29 2.35 31.92 5.18
6139 9836 1.596477 GCTTCCTAGGAGCATGCGG 60.596 63.158 21.42 7.17 0.00 5.69
6142 9839 2.016393 TTCCTAGGAGCATGCGGACG 62.016 60.000 12.26 1.06 0.00 4.79
6327 11815 7.029563 AGTAAATTTGCGCTCTATTTTTCCTG 58.970 34.615 9.73 0.00 0.00 3.86
6346 11834 4.690748 TCCTGTGAGCGAAGAGTAAATTTG 59.309 41.667 0.00 0.00 0.00 2.32
6375 11863 5.016051 CAGGTCAATACTGCAGACACTAT 57.984 43.478 23.35 4.58 34.04 2.12
6378 11866 7.041721 CAGGTCAATACTGCAGACACTATTTA 58.958 38.462 23.35 2.72 34.04 1.40
6475 11964 3.923017 AGACATGCAACAAAGTAAGGC 57.077 42.857 0.00 0.00 0.00 4.35
6483 11972 3.552890 GCAACAAAGTAAGGCCTCCTTTG 60.553 47.826 34.50 34.50 41.69 2.77
6484 11973 3.876309 ACAAAGTAAGGCCTCCTTTGA 57.124 42.857 38.71 12.22 41.69 2.69
6491 11980 1.553706 AGGCCTCCTTTGATTTGCAG 58.446 50.000 0.00 0.00 0.00 4.41
6511 12011 7.707624 TGCAGGAATTTTATGGGATATGATC 57.292 36.000 0.00 0.00 0.00 2.92
6549 12049 1.036707 TTACAGCTTGTTTGGCACCC 58.963 50.000 0.00 0.00 0.00 4.61
6576 12076 5.736951 TTTGGGTCGGAATTCATGAAATT 57.263 34.783 13.09 7.46 40.34 1.82
6614 12114 2.037511 CACCAACATGTTTGATTGCCCT 59.962 45.455 16.01 0.00 0.00 5.19
6623 12123 2.302733 GTTTGATTGCCCTGGAATTGGT 59.697 45.455 0.00 0.00 0.00 3.67
6642 12142 6.462552 TTGGTTGTCAGAATTCATTTCACA 57.537 33.333 8.44 0.00 36.75 3.58
6654 12154 7.671398 AGAATTCATTTCACAGTTCCATAGGTT 59.329 33.333 8.44 0.00 36.75 3.50
6677 12177 4.690280 TCGAACCGGTACTTAAACCAAATC 59.310 41.667 8.00 0.00 39.71 2.17
6680 12180 4.329392 ACCGGTACTTAAACCAAATCCTG 58.671 43.478 4.49 0.00 39.71 3.86
6698 12198 2.887152 CCTGGCCAATAAGCTACCATTC 59.113 50.000 7.01 0.00 0.00 2.67
6715 12215 3.893813 CCATTCCCCAAATCCAATCTCTC 59.106 47.826 0.00 0.00 0.00 3.20
6728 12228 0.179004 ATCTCTCTCGACGCCCTCAT 60.179 55.000 0.00 0.00 0.00 2.90
6731 12231 0.394488 TCTCTCGACGCCCTCATCTT 60.394 55.000 0.00 0.00 0.00 2.40
6761 12261 1.592223 CCTCGTCTCCTTCCACCAC 59.408 63.158 0.00 0.00 0.00 4.16
6780 12280 3.654020 GCCGCCCATGAGATTCGC 61.654 66.667 0.00 0.00 0.00 4.70
6800 12300 4.697756 TCGCCGCCAGTCCAAAGG 62.698 66.667 0.00 0.00 0.00 3.11
6829 12329 2.687200 CGGAGTCCATCCCCCACA 60.687 66.667 10.49 0.00 46.50 4.17
6839 12339 1.578215 ATCCCCCACAAGCAGAGCAT 61.578 55.000 0.00 0.00 0.00 3.79
6845 12345 2.012673 CCACAAGCAGAGCATCCTAAC 58.987 52.381 0.00 0.00 33.66 2.34
6850 12350 1.135915 AGCAGAGCATCCTAACGTCAG 59.864 52.381 0.00 0.00 33.66 3.51
6882 12382 0.678395 CACCGATCCCATCTCTCCAG 59.322 60.000 0.00 0.00 0.00 3.86
6902 12402 1.614241 CCCCCTCTTGTACCTCACCG 61.614 65.000 0.00 0.00 0.00 4.94
6905 12405 1.218316 CTCTTGTACCTCACCGCCC 59.782 63.158 0.00 0.00 0.00 6.13
6962 12462 4.844085 TCTCCTACAAATCAAGTTCCCAGA 59.156 41.667 0.00 0.00 0.00 3.86
6979 12479 3.744942 CCCAGAATCACTATGAAGATGCG 59.255 47.826 0.00 0.00 0.00 4.73
6982 12482 6.162079 CCAGAATCACTATGAAGATGCGTAT 58.838 40.000 0.00 0.00 0.00 3.06
6983 12483 6.090493 CCAGAATCACTATGAAGATGCGTATG 59.910 42.308 0.00 0.00 0.00 2.39
6992 12492 4.631131 TGAAGATGCGTATGGGTTAGATG 58.369 43.478 0.00 0.00 0.00 2.90
7005 12505 4.408921 TGGGTTAGATGTGATCCTTACCAG 59.591 45.833 7.05 0.00 0.00 4.00
7014 12514 1.137086 GATCCTTACCAGCTCGAGCAA 59.863 52.381 36.87 21.86 45.16 3.91
7015 12515 1.195115 TCCTTACCAGCTCGAGCAAT 58.805 50.000 36.87 23.74 45.16 3.56
7017 12517 1.293924 CTTACCAGCTCGAGCAATGG 58.706 55.000 36.87 34.63 45.16 3.16
7030 12530 2.163211 GAGCAATGGAAGAAGAGTTGGC 59.837 50.000 0.00 0.00 0.00 4.52
7035 12535 1.202927 TGGAAGAAGAGTTGGCCAAGG 60.203 52.381 21.21 0.00 0.00 3.61
7038 12538 1.439543 AGAAGAGTTGGCCAAGGACT 58.560 50.000 21.21 14.21 0.00 3.85
7040 12540 0.538287 AAGAGTTGGCCAAGGACTGC 60.538 55.000 21.21 5.83 0.00 4.40
7045 12545 2.514824 GGCCAAGGACTGCCGATC 60.515 66.667 0.00 0.00 38.00 3.69
7072 12572 3.267483 TCCCGCAGCTAGAATTTACAAC 58.733 45.455 0.00 0.00 0.00 3.32
7081 12581 5.014228 AGCTAGAATTTACAACCTCCCAACT 59.986 40.000 0.00 0.00 0.00 3.16
7082 12582 5.123979 GCTAGAATTTACAACCTCCCAACTG 59.876 44.000 0.00 0.00 0.00 3.16
7084 12584 1.600023 TTTACAACCTCCCAACTGCG 58.400 50.000 0.00 0.00 0.00 5.18
7098 12598 1.343069 ACTGCGAGAGTTTCTCCCTT 58.657 50.000 0.79 0.00 40.34 3.95
7117 12617 5.048991 TCCCTTAAACGAAGATTGAAAGCAC 60.049 40.000 0.00 0.00 37.33 4.40
7120 12620 4.749245 AAACGAAGATTGAAAGCACGAT 57.251 36.364 0.00 0.00 0.00 3.73
7140 12640 2.813908 CTCTACCGGGTTGCACGC 60.814 66.667 4.31 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.801395 CGTACTCGCCGTGATCCAAAT 60.801 52.381 0.00 0.00 0.00 2.32
8 9 0.457166 CGTACTCGCCGTGATCCAAA 60.457 55.000 0.00 0.00 0.00 3.28
11 12 1.298190 GTCGTACTCGCCGTGATCC 60.298 63.158 0.00 0.00 36.96 3.36
12 13 0.316032 GAGTCGTACTCGCCGTGATC 60.316 60.000 0.00 0.00 35.28 2.92
13 14 1.712977 GGAGTCGTACTCGCCGTGAT 61.713 60.000 8.33 0.00 45.96 3.06
14 15 2.393768 GGAGTCGTACTCGCCGTGA 61.394 63.158 8.33 0.00 45.96 4.35
15 16 2.099831 GGAGTCGTACTCGCCGTG 59.900 66.667 8.33 0.00 45.96 4.94
16 17 3.494336 CGGAGTCGTACTCGCCGT 61.494 66.667 16.94 0.00 45.96 5.68
33 34 3.471495 GTTCCAATGAACGTGGATGAC 57.529 47.619 0.00 0.00 44.62 3.06
55 56 0.248498 TTGTAGATCGCGAGCGGAAG 60.248 55.000 19.77 0.00 40.25 3.46
56 57 0.248498 CTTGTAGATCGCGAGCGGAA 60.248 55.000 19.77 11.67 40.25 4.30
57 58 1.355563 CTTGTAGATCGCGAGCGGA 59.644 57.895 19.77 8.43 40.25 5.54
58 59 1.658717 CCTTGTAGATCGCGAGCGG 60.659 63.158 19.77 9.89 40.25 5.52
59 60 1.658717 CCCTTGTAGATCGCGAGCG 60.659 63.158 19.77 11.64 41.35 5.03
60 61 0.666913 TACCCTTGTAGATCGCGAGC 59.333 55.000 18.21 18.21 0.00 5.03
61 62 2.293677 ACATACCCTTGTAGATCGCGAG 59.706 50.000 16.66 0.00 0.00 5.03
62 63 2.304092 ACATACCCTTGTAGATCGCGA 58.696 47.619 13.09 13.09 0.00 5.87
63 64 2.795175 ACATACCCTTGTAGATCGCG 57.205 50.000 0.00 0.00 0.00 5.87
69 70 5.509840 GGAGTGCATCTACATACCCTTGTAG 60.510 48.000 5.47 5.47 46.85 2.74
70 71 4.344102 GGAGTGCATCTACATACCCTTGTA 59.656 45.833 0.00 0.00 0.00 2.41
71 72 3.134804 GGAGTGCATCTACATACCCTTGT 59.865 47.826 0.00 0.00 0.00 3.16
72 73 3.389329 AGGAGTGCATCTACATACCCTTG 59.611 47.826 0.00 0.00 0.00 3.61
73 74 3.658725 AGGAGTGCATCTACATACCCTT 58.341 45.455 0.00 0.00 0.00 3.95
74 75 3.336509 AGGAGTGCATCTACATACCCT 57.663 47.619 0.00 0.00 0.00 4.34
75 76 4.381411 GAAAGGAGTGCATCTACATACCC 58.619 47.826 0.00 0.00 0.00 3.69
76 77 4.381411 GGAAAGGAGTGCATCTACATACC 58.619 47.826 0.00 0.00 0.00 2.73
77 78 4.381411 GGGAAAGGAGTGCATCTACATAC 58.619 47.826 0.00 0.00 0.00 2.39
78 79 3.391296 GGGGAAAGGAGTGCATCTACATA 59.609 47.826 0.00 0.00 0.00 2.29
79 80 2.173569 GGGGAAAGGAGTGCATCTACAT 59.826 50.000 0.00 0.00 0.00 2.29
80 81 1.559682 GGGGAAAGGAGTGCATCTACA 59.440 52.381 0.00 0.00 0.00 2.74
81 82 1.840635 AGGGGAAAGGAGTGCATCTAC 59.159 52.381 0.00 0.00 0.00 2.59
82 83 2.119495 GAGGGGAAAGGAGTGCATCTA 58.881 52.381 0.00 0.00 0.00 1.98
83 84 0.915364 GAGGGGAAAGGAGTGCATCT 59.085 55.000 0.00 0.00 0.00 2.90
84 85 0.462759 CGAGGGGAAAGGAGTGCATC 60.463 60.000 0.00 0.00 0.00 3.91
85 86 1.201429 ACGAGGGGAAAGGAGTGCAT 61.201 55.000 0.00 0.00 0.00 3.96
86 87 1.415672 AACGAGGGGAAAGGAGTGCA 61.416 55.000 0.00 0.00 0.00 4.57
87 88 0.955919 CAACGAGGGGAAAGGAGTGC 60.956 60.000 0.00 0.00 0.00 4.40
88 89 0.955919 GCAACGAGGGGAAAGGAGTG 60.956 60.000 0.00 0.00 0.00 3.51
89 90 1.128188 AGCAACGAGGGGAAAGGAGT 61.128 55.000 0.00 0.00 0.00 3.85
90 91 0.902531 TAGCAACGAGGGGAAAGGAG 59.097 55.000 0.00 0.00 0.00 3.69
91 92 0.902531 CTAGCAACGAGGGGAAAGGA 59.097 55.000 0.00 0.00 0.00 3.36
92 93 0.613777 ACTAGCAACGAGGGGAAAGG 59.386 55.000 0.00 0.00 0.00 3.11
93 94 2.758979 TCTACTAGCAACGAGGGGAAAG 59.241 50.000 0.00 0.00 0.00 2.62
94 95 2.494870 GTCTACTAGCAACGAGGGGAAA 59.505 50.000 0.00 0.00 0.00 3.13
95 96 2.097825 GTCTACTAGCAACGAGGGGAA 58.902 52.381 0.00 0.00 0.00 3.97
96 97 1.284198 AGTCTACTAGCAACGAGGGGA 59.716 52.381 0.00 0.00 0.00 4.81
97 98 1.677052 GAGTCTACTAGCAACGAGGGG 59.323 57.143 0.00 0.00 0.00 4.79
98 99 1.677052 GGAGTCTACTAGCAACGAGGG 59.323 57.143 0.00 0.00 0.00 4.30
99 100 2.366533 TGGAGTCTACTAGCAACGAGG 58.633 52.381 0.00 0.00 0.00 4.63
100 101 5.057819 TCTATGGAGTCTACTAGCAACGAG 58.942 45.833 0.00 0.00 0.00 4.18
101 102 5.032327 TCTATGGAGTCTACTAGCAACGA 57.968 43.478 0.00 0.00 0.00 3.85
102 103 5.694816 CATCTATGGAGTCTACTAGCAACG 58.305 45.833 0.00 0.00 0.00 4.10
103 104 5.010112 TGCATCTATGGAGTCTACTAGCAAC 59.990 44.000 0.00 0.00 0.00 4.17
104 105 5.140454 TGCATCTATGGAGTCTACTAGCAA 58.860 41.667 0.00 0.00 0.00 3.91
105 106 4.729868 TGCATCTATGGAGTCTACTAGCA 58.270 43.478 0.00 0.00 0.00 3.49
106 107 5.652014 AGATGCATCTATGGAGTCTACTAGC 59.348 44.000 27.73 0.00 34.85 3.42
107 108 7.362834 CCAAGATGCATCTATGGAGTCTACTAG 60.363 44.444 32.66 15.10 37.31 2.57
108 109 6.435591 CCAAGATGCATCTATGGAGTCTACTA 59.564 42.308 32.66 0.00 37.31 1.82
109 110 5.245751 CCAAGATGCATCTATGGAGTCTACT 59.754 44.000 32.66 14.71 37.31 2.57
110 111 5.011533 ACCAAGATGCATCTATGGAGTCTAC 59.988 44.000 37.45 12.81 37.92 2.59
111 112 5.011431 CACCAAGATGCATCTATGGAGTCTA 59.989 44.000 37.45 0.00 37.92 2.59
112 113 3.972638 ACCAAGATGCATCTATGGAGTCT 59.027 43.478 37.45 24.67 37.92 3.24
113 114 4.063689 CACCAAGATGCATCTATGGAGTC 58.936 47.826 37.45 14.82 37.92 3.36
114 115 3.713248 TCACCAAGATGCATCTATGGAGT 59.287 43.478 37.45 25.35 37.92 3.85
115 116 4.316645 CTCACCAAGATGCATCTATGGAG 58.683 47.826 37.45 32.98 37.92 3.86
116 117 3.495629 GCTCACCAAGATGCATCTATGGA 60.496 47.826 37.45 27.44 37.92 3.41
117 118 2.812591 GCTCACCAAGATGCATCTATGG 59.187 50.000 33.40 33.40 39.18 2.74
118 119 2.479275 CGCTCACCAAGATGCATCTATG 59.521 50.000 28.92 24.39 35.76 2.23
119 120 2.103771 ACGCTCACCAAGATGCATCTAT 59.896 45.455 28.92 16.11 35.76 1.98
120 121 1.482182 ACGCTCACCAAGATGCATCTA 59.518 47.619 28.92 12.50 35.76 1.98
121 122 0.251354 ACGCTCACCAAGATGCATCT 59.749 50.000 23.75 23.75 39.22 2.90
122 123 1.863454 CTACGCTCACCAAGATGCATC 59.137 52.381 19.37 19.37 0.00 3.91
123 124 1.473965 CCTACGCTCACCAAGATGCAT 60.474 52.381 0.00 0.00 0.00 3.96
124 125 0.108186 CCTACGCTCACCAAGATGCA 60.108 55.000 0.00 0.00 0.00 3.96
125 126 0.175760 TCCTACGCTCACCAAGATGC 59.824 55.000 0.00 0.00 0.00 3.91
126 127 2.672961 TTCCTACGCTCACCAAGATG 57.327 50.000 0.00 0.00 0.00 2.90
127 128 3.695830 TTTTCCTACGCTCACCAAGAT 57.304 42.857 0.00 0.00 0.00 2.40
128 129 3.695830 ATTTTCCTACGCTCACCAAGA 57.304 42.857 0.00 0.00 0.00 3.02
129 130 4.766404 AAATTTTCCTACGCTCACCAAG 57.234 40.909 0.00 0.00 0.00 3.61
130 131 6.636562 TTAAAATTTTCCTACGCTCACCAA 57.363 33.333 6.72 0.00 0.00 3.67
131 132 6.636562 TTTAAAATTTTCCTACGCTCACCA 57.363 33.333 6.72 0.00 0.00 4.17
132 133 8.528917 AATTTTAAAATTTTCCTACGCTCACC 57.471 30.769 18.40 0.00 35.16 4.02
136 137 9.869757 AGCATAATTTTAAAATTTTCCTACGCT 57.130 25.926 26.56 19.58 39.24 5.07
155 156 9.515020 CAAAATTGTTGGTAATCGTAGCATAAT 57.485 29.630 0.00 0.00 37.56 1.28
156 157 8.731605 TCAAAATTGTTGGTAATCGTAGCATAA 58.268 29.630 0.00 0.00 37.56 1.90
157 158 8.178964 GTCAAAATTGTTGGTAATCGTAGCATA 58.821 33.333 0.00 0.00 37.56 3.14
158 159 7.027161 GTCAAAATTGTTGGTAATCGTAGCAT 58.973 34.615 0.00 0.00 37.56 3.79
159 160 6.375377 GTCAAAATTGTTGGTAATCGTAGCA 58.625 36.000 0.00 0.00 35.94 3.49
160 161 5.798434 GGTCAAAATTGTTGGTAATCGTAGC 59.202 40.000 0.00 0.00 0.00 3.58
161 162 7.094975 TGAGGTCAAAATTGTTGGTAATCGTAG 60.095 37.037 0.00 0.00 0.00 3.51
162 163 6.711194 TGAGGTCAAAATTGTTGGTAATCGTA 59.289 34.615 0.00 0.00 0.00 3.43
163 164 5.533154 TGAGGTCAAAATTGTTGGTAATCGT 59.467 36.000 0.00 0.00 0.00 3.73
164 165 6.007936 TGAGGTCAAAATTGTTGGTAATCG 57.992 37.500 0.00 0.00 0.00 3.34
165 166 7.214467 TCTGAGGTCAAAATTGTTGGTAATC 57.786 36.000 0.00 0.00 0.00 1.75
166 167 7.781324 ATCTGAGGTCAAAATTGTTGGTAAT 57.219 32.000 0.00 0.00 0.00 1.89
167 168 7.432869 CAATCTGAGGTCAAAATTGTTGGTAA 58.567 34.615 6.59 0.00 0.00 2.85
168 169 6.516527 GCAATCTGAGGTCAAAATTGTTGGTA 60.517 38.462 12.73 0.00 31.52 3.25
169 170 5.739935 GCAATCTGAGGTCAAAATTGTTGGT 60.740 40.000 12.73 0.00 31.52 3.67
170 171 4.687483 GCAATCTGAGGTCAAAATTGTTGG 59.313 41.667 12.73 0.00 31.52 3.77
171 172 5.291178 TGCAATCTGAGGTCAAAATTGTTG 58.709 37.500 12.73 0.00 31.52 3.33
172 173 5.534207 TGCAATCTGAGGTCAAAATTGTT 57.466 34.783 12.73 0.00 31.52 2.83
173 174 5.733620 ATGCAATCTGAGGTCAAAATTGT 57.266 34.783 12.73 0.00 31.52 2.71
174 175 9.806203 TTTATATGCAATCTGAGGTCAAAATTG 57.194 29.630 0.00 9.09 0.00 2.32
263 266 7.508687 TCATGGTTAGATTAGCTCTTGCAATA 58.491 34.615 0.00 0.00 42.74 1.90
282 285 4.916041 TTGTCCTTTCATCTCTCATGGT 57.084 40.909 0.00 0.00 0.00 3.55
284 287 6.530534 GCAAATTTGTCCTTTCATCTCTCATG 59.469 38.462 19.03 0.00 0.00 3.07
305 308 6.097554 TCCAAGTGATCAAAAAGGTTAGCAAA 59.902 34.615 0.00 0.00 0.00 3.68
318 321 2.091720 CCCCATCCATCCAAGTGATCAA 60.092 50.000 0.00 0.00 0.00 2.57
407 410 1.433199 CTTCCCCTTTCCCCTTTCCTT 59.567 52.381 0.00 0.00 0.00 3.36
412 415 1.541275 TGTTCTTCCCCTTTCCCCTT 58.459 50.000 0.00 0.00 0.00 3.95
458 466 9.824216 GGTACTGAAGGGCATCCTATATATATA 57.176 37.037 2.49 2.49 44.07 0.86
459 467 7.451877 CGGTACTGAAGGGCATCCTATATATAT 59.548 40.741 0.00 0.00 44.07 0.86
460 468 6.776116 CGGTACTGAAGGGCATCCTATATATA 59.224 42.308 0.00 0.00 44.07 0.86
461 469 5.598830 CGGTACTGAAGGGCATCCTATATAT 59.401 44.000 0.00 0.00 44.07 0.86
473 481 2.063774 ACCAACCGGTACTGAAGGG 58.936 57.895 8.00 3.70 46.71 3.95
533 541 7.052248 GCACCTTTAGTACCTGTTGGTTATAT 58.948 38.462 0.00 0.00 46.05 0.86
544 552 1.628846 CCACCAGCACCTTTAGTACCT 59.371 52.381 0.00 0.00 0.00 3.08
576 584 2.203337 TGGTGGCAGGCTTGTGTC 60.203 61.111 0.00 0.00 0.00 3.67
624 632 1.396996 GCGGCGGCGATCATTAATATT 59.603 47.619 36.87 0.00 0.00 1.28
625 633 1.006832 GCGGCGGCGATCATTAATAT 58.993 50.000 36.87 0.00 0.00 1.28
628 636 2.089887 TAGGCGGCGGCGATCATTAA 62.090 55.000 36.87 9.19 41.24 1.40
649 658 4.391830 GCTCATTAGTGTCGGTTTCAATGA 59.608 41.667 0.00 0.00 32.93 2.57
655 664 3.120321 TGTGCTCATTAGTGTCGGTTT 57.880 42.857 0.00 0.00 0.00 3.27
657 666 3.334583 AATGTGCTCATTAGTGTCGGT 57.665 42.857 12.14 0.00 41.76 4.69
690 699 7.916914 ACACATTATAGTCCCAGTTTGTAAC 57.083 36.000 0.00 0.00 0.00 2.50
714 723 9.720769 CTAGTAGAAAAAGGGTCTAATGTGAAA 57.279 33.333 0.00 0.00 29.37 2.69
724 733 7.094762 CCATTGTTCACTAGTAGAAAAAGGGTC 60.095 40.741 21.30 7.48 38.63 4.46
725 734 6.715264 CCATTGTTCACTAGTAGAAAAAGGGT 59.285 38.462 21.30 5.69 38.63 4.34
778 787 8.838365 ACTAAACTCCATGTAATCGACTACTAG 58.162 37.037 5.55 0.00 0.00 2.57
779 788 8.743085 ACTAAACTCCATGTAATCGACTACTA 57.257 34.615 5.55 0.00 0.00 1.82
780 789 7.556996 AGACTAAACTCCATGTAATCGACTACT 59.443 37.037 5.55 0.00 0.00 2.57
781 790 7.644551 CAGACTAAACTCCATGTAATCGACTAC 59.355 40.741 0.00 0.00 0.00 2.73
782 791 7.681304 GCAGACTAAACTCCATGTAATCGACTA 60.681 40.741 0.00 0.00 0.00 2.59
783 792 6.565234 CAGACTAAACTCCATGTAATCGACT 58.435 40.000 0.00 0.00 0.00 4.18
795 804 4.574828 TGTGTTTTCAGCAGACTAAACTCC 59.425 41.667 7.62 1.21 32.99 3.85
807 816 5.051307 GGTTAAAATTCGGTGTGTTTTCAGC 60.051 40.000 0.00 0.00 0.00 4.26
813 822 7.041235 TCGATTAAGGTTAAAATTCGGTGTGTT 60.041 33.333 4.85 0.00 0.00 3.32
824 833 7.662669 AGTTTAGTGCCTCGATTAAGGTTAAAA 59.337 33.333 0.00 0.00 38.79 1.52
825 834 7.163441 AGTTTAGTGCCTCGATTAAGGTTAAA 58.837 34.615 0.00 0.00 38.79 1.52
852 861 2.489938 ATGGGTGTAACGATGCAAGT 57.510 45.000 0.00 0.00 38.12 3.16
866 875 3.119029 GCATGCATTGACTTTGTATGGGT 60.119 43.478 14.21 0.00 37.57 4.51
872 881 2.409975 GCTTGCATGCATTGACTTTGT 58.590 42.857 23.37 0.00 0.00 2.83
901 910 0.323178 TAGTCCTCCGGTGTGTCCTC 60.323 60.000 0.00 0.00 0.00 3.71
949 965 1.144936 GGAAGGCAGGATCCGAGTG 59.855 63.158 5.98 0.00 0.00 3.51
1059 1078 2.182030 CAGTTCCTCGTCTCCGCC 59.818 66.667 0.00 0.00 0.00 6.13
1060 1079 2.182030 CCAGTTCCTCGTCTCCGC 59.818 66.667 0.00 0.00 0.00 5.54
1061 1080 2.885861 CCCAGTTCCTCGTCTCCG 59.114 66.667 0.00 0.00 0.00 4.63
1062 1081 2.579738 GCCCAGTTCCTCGTCTCC 59.420 66.667 0.00 0.00 0.00 3.71
1063 1082 2.182030 CGCCCAGTTCCTCGTCTC 59.818 66.667 0.00 0.00 0.00 3.36
1064 1083 3.382832 CCGCCCAGTTCCTCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
1065 1084 3.379445 TCCGCCCAGTTCCTCGTC 61.379 66.667 0.00 0.00 0.00 4.20
1066 1085 3.692406 GTCCGCCCAGTTCCTCGT 61.692 66.667 0.00 0.00 0.00 4.18
1067 1086 3.019003 ATGTCCGCCCAGTTCCTCG 62.019 63.158 0.00 0.00 0.00 4.63
1068 1087 1.450312 CATGTCCGCCCAGTTCCTC 60.450 63.158 0.00 0.00 0.00 3.71
1069 1088 2.671070 CATGTCCGCCCAGTTCCT 59.329 61.111 0.00 0.00 0.00 3.36
1233 1263 1.144936 GTTGATGCGGGAGGAGAGG 59.855 63.158 0.00 0.00 0.00 3.69
1303 1333 1.226575 CGTACTCGCCGCAGAATGA 60.227 57.895 0.00 0.00 39.69 2.57
1410 1443 7.375017 CACAAAAATAAACCTCTGTACGACAAC 59.625 37.037 0.00 0.00 0.00 3.32
1412 1445 6.539464 ACACAAAAATAAACCTCTGTACGACA 59.461 34.615 0.00 0.00 0.00 4.35
1413 1446 6.951643 ACACAAAAATAAACCTCTGTACGAC 58.048 36.000 0.00 0.00 0.00 4.34
1415 1448 6.854381 GGAACACAAAAATAAACCTCTGTACG 59.146 38.462 0.00 0.00 0.00 3.67
1416 1449 6.854381 CGGAACACAAAAATAAACCTCTGTAC 59.146 38.462 0.00 0.00 0.00 2.90
1455 1491 5.234543 GCTAGCTAACAAGGGAAAATCGTAG 59.765 44.000 7.70 0.00 0.00 3.51
1540 1578 8.656806 TCTCTAAAAAGACTAGATTTGGGAACA 58.343 33.333 0.00 0.00 39.83 3.18
1541 1579 9.674068 ATCTCTAAAAAGACTAGATTTGGGAAC 57.326 33.333 0.00 0.00 0.00 3.62
1552 1590 9.284968 CCCTTGTTGAAATCTCTAAAAAGACTA 57.715 33.333 0.00 0.00 0.00 2.59
1553 1591 7.998964 TCCCTTGTTGAAATCTCTAAAAAGACT 59.001 33.333 0.00 0.00 0.00 3.24
1554 1592 8.076781 GTCCCTTGTTGAAATCTCTAAAAAGAC 58.923 37.037 0.00 0.00 0.00 3.01
1555 1593 7.998964 AGTCCCTTGTTGAAATCTCTAAAAAGA 59.001 33.333 0.00 0.00 0.00 2.52
1556 1594 8.171164 AGTCCCTTGTTGAAATCTCTAAAAAG 57.829 34.615 0.00 0.00 0.00 2.27
1557 1595 9.063615 GTAGTCCCTTGTTGAAATCTCTAAAAA 57.936 33.333 0.00 0.00 0.00 1.94
1558 1596 8.215050 TGTAGTCCCTTGTTGAAATCTCTAAAA 58.785 33.333 0.00 0.00 0.00 1.52
1559 1597 7.741785 TGTAGTCCCTTGTTGAAATCTCTAAA 58.258 34.615 0.00 0.00 0.00 1.85
1560 1598 7.311092 TGTAGTCCCTTGTTGAAATCTCTAA 57.689 36.000 0.00 0.00 0.00 2.10
1561 1599 6.928348 TGTAGTCCCTTGTTGAAATCTCTA 57.072 37.500 0.00 0.00 0.00 2.43
1562 1600 5.825593 TGTAGTCCCTTGTTGAAATCTCT 57.174 39.130 0.00 0.00 0.00 3.10
1563 1601 6.255887 CGTATGTAGTCCCTTGTTGAAATCTC 59.744 42.308 0.00 0.00 0.00 2.75
1564 1602 6.070995 TCGTATGTAGTCCCTTGTTGAAATCT 60.071 38.462 0.00 0.00 0.00 2.40
1565 1603 6.103997 TCGTATGTAGTCCCTTGTTGAAATC 58.896 40.000 0.00 0.00 0.00 2.17
1566 1604 6.045072 TCGTATGTAGTCCCTTGTTGAAAT 57.955 37.500 0.00 0.00 0.00 2.17
1567 1605 5.471556 TCGTATGTAGTCCCTTGTTGAAA 57.528 39.130 0.00 0.00 0.00 2.69
1568 1606 5.471556 TTCGTATGTAGTCCCTTGTTGAA 57.528 39.130 0.00 0.00 0.00 2.69
1569 1607 5.471556 TTTCGTATGTAGTCCCTTGTTGA 57.528 39.130 0.00 0.00 0.00 3.18
1570 1608 7.837202 TTATTTCGTATGTAGTCCCTTGTTG 57.163 36.000 0.00 0.00 0.00 3.33
1571 1609 8.851541 TTTTATTTCGTATGTAGTCCCTTGTT 57.148 30.769 0.00 0.00 0.00 2.83
1572 1610 8.851541 TTTTTATTTCGTATGTAGTCCCTTGT 57.148 30.769 0.00 0.00 0.00 3.16
1573 1611 9.716507 CATTTTTATTTCGTATGTAGTCCCTTG 57.283 33.333 0.00 0.00 0.00 3.61
1574 1612 9.675464 TCATTTTTATTTCGTATGTAGTCCCTT 57.325 29.630 0.00 0.00 0.00 3.95
1575 1613 9.326413 CTCATTTTTATTTCGTATGTAGTCCCT 57.674 33.333 0.00 0.00 0.00 4.20
1576 1614 9.106070 ACTCATTTTTATTTCGTATGTAGTCCC 57.894 33.333 0.00 0.00 0.00 4.46
1577 1615 9.916397 CACTCATTTTTATTTCGTATGTAGTCC 57.084 33.333 0.00 0.00 0.00 3.85
1629 1667 9.330063 CAAATGGACTACAACATACAGATGTAT 57.670 33.333 0.00 0.00 45.93 2.29
1630 1668 8.536175 TCAAATGGACTACAACATACAGATGTA 58.464 33.333 0.00 0.00 45.93 2.29
1632 1670 7.848223 TCAAATGGACTACAACATACAGATG 57.152 36.000 0.00 0.00 39.16 2.90
1633 1671 8.862325 TTTCAAATGGACTACAACATACAGAT 57.138 30.769 0.00 0.00 0.00 2.90
1634 1672 8.862325 ATTTCAAATGGACTACAACATACAGA 57.138 30.769 0.00 0.00 0.00 3.41
1635 1673 9.912634 AAATTTCAAATGGACTACAACATACAG 57.087 29.630 0.00 0.00 0.00 2.74
1636 1674 9.906660 GAAATTTCAAATGGACTACAACATACA 57.093 29.630 13.40 0.00 0.00 2.29
1646 1684 9.764363 GGTCTTTTTAGAAATTTCAAATGGACT 57.236 29.630 19.99 0.00 0.00 3.85
1647 1685 9.764363 AGGTCTTTTTAGAAATTTCAAATGGAC 57.236 29.630 19.99 20.72 0.00 4.02
1665 1703 8.963725 CCCTCCGTTTTTAAATATAGGTCTTTT 58.036 33.333 0.00 0.00 0.00 2.27
1666 1704 8.330993 TCCCTCCGTTTTTAAATATAGGTCTTT 58.669 33.333 0.00 0.00 0.00 2.52
1667 1705 7.864770 TCCCTCCGTTTTTAAATATAGGTCTT 58.135 34.615 0.00 0.00 0.00 3.01
1668 1706 7.126879 ACTCCCTCCGTTTTTAAATATAGGTCT 59.873 37.037 0.00 0.00 0.00 3.85
1669 1707 7.278135 ACTCCCTCCGTTTTTAAATATAGGTC 58.722 38.462 0.00 0.00 0.00 3.85
1670 1708 7.204243 ACTCCCTCCGTTTTTAAATATAGGT 57.796 36.000 0.00 0.00 0.00 3.08
1671 1709 8.206189 TGTACTCCCTCCGTTTTTAAATATAGG 58.794 37.037 0.00 0.00 0.00 2.57
1672 1710 9.774413 ATGTACTCCCTCCGTTTTTAAATATAG 57.226 33.333 0.00 0.00 0.00 1.31
1674 1712 9.774413 CTATGTACTCCCTCCGTTTTTAAATAT 57.226 33.333 0.00 0.00 0.00 1.28
1675 1713 8.761689 ACTATGTACTCCCTCCGTTTTTAAATA 58.238 33.333 0.00 0.00 0.00 1.40
1676 1714 7.627311 ACTATGTACTCCCTCCGTTTTTAAAT 58.373 34.615 0.00 0.00 0.00 1.40
1677 1715 7.008021 ACTATGTACTCCCTCCGTTTTTAAA 57.992 36.000 0.00 0.00 0.00 1.52
1678 1716 6.610075 ACTATGTACTCCCTCCGTTTTTAA 57.390 37.500 0.00 0.00 0.00 1.52
1679 1717 7.902920 ATACTATGTACTCCCTCCGTTTTTA 57.097 36.000 0.00 0.00 0.00 1.52
1680 1718 6.803366 ATACTATGTACTCCCTCCGTTTTT 57.197 37.500 0.00 0.00 0.00 1.94
1681 1719 7.508296 ACATATACTATGTACTCCCTCCGTTTT 59.492 37.037 0.00 0.00 0.00 2.43
1682 1720 7.008941 ACATATACTATGTACTCCCTCCGTTT 58.991 38.462 0.00 0.00 0.00 3.60
1683 1721 6.433404 CACATATACTATGTACTCCCTCCGTT 59.567 42.308 0.00 0.00 0.00 4.44
1684 1722 5.944599 CACATATACTATGTACTCCCTCCGT 59.055 44.000 0.00 0.00 0.00 4.69
1685 1723 5.944599 ACACATATACTATGTACTCCCTCCG 59.055 44.000 0.00 0.00 0.00 4.63
1686 1724 7.778185 AACACATATACTATGTACTCCCTCC 57.222 40.000 0.00 0.00 0.00 4.30
1699 1737 9.627123 ATGTTAGGTGCAATTAACACATATACT 57.373 29.630 20.35 6.27 41.15 2.12
1702 1740 8.965819 TGAATGTTAGGTGCAATTAACACATAT 58.034 29.630 20.35 11.10 41.15 1.78
1703 1741 8.341892 TGAATGTTAGGTGCAATTAACACATA 57.658 30.769 20.35 6.99 41.15 2.29
1704 1742 7.225784 TGAATGTTAGGTGCAATTAACACAT 57.774 32.000 20.35 14.65 41.15 3.21
1705 1743 6.641169 TGAATGTTAGGTGCAATTAACACA 57.359 33.333 20.35 14.41 41.15 3.72
1706 1744 7.938563 TTTGAATGTTAGGTGCAATTAACAC 57.061 32.000 20.35 12.66 41.15 3.32
1867 1908 1.904287 TTACGGGCAGCAGAACAAAT 58.096 45.000 0.00 0.00 0.00 2.32
1875 1916 7.663905 AGATAAATATAACAATTACGGGCAGCA 59.336 33.333 0.00 0.00 0.00 4.41
1888 1929 6.704493 GGGCGACAGTCAAGATAAATATAACA 59.296 38.462 0.41 0.00 0.00 2.41
1898 1939 3.845781 ATTATGGGCGACAGTCAAGAT 57.154 42.857 0.41 0.00 0.00 2.40
1988 2029 7.036220 AGTTCAGTCCATTTAACAGTATCGAG 58.964 38.462 0.00 0.00 0.00 4.04
2041 2082 3.500680 TGAAGTTCGGTCCATTTAACTGC 59.499 43.478 0.00 0.00 32.69 4.40
2043 2084 6.894339 ATTTGAAGTTCGGTCCATTTAACT 57.106 33.333 0.00 0.00 33.72 2.24
2055 2096 7.902917 TCAATTAGCGTCAATATTTGAAGTTCG 59.097 33.333 0.00 0.82 42.15 3.95
2078 2145 7.930325 TGCATAAGATGACCAACAAATTTTCAA 59.070 29.630 0.00 0.00 0.00 2.69
2145 2428 3.620427 ATGCGGGTCATAACACAGTTA 57.380 42.857 0.00 0.00 32.59 2.24
2236 2519 4.750098 AGCAAACGATCCTAATAACGATGG 59.250 41.667 0.00 0.00 0.00 3.51
2237 2520 5.907197 AGCAAACGATCCTAATAACGATG 57.093 39.130 0.00 0.00 0.00 3.84
2258 2541 6.844097 AGAGAGGTTTACTTGACTCCTAAG 57.156 41.667 0.00 0.00 0.00 2.18
2319 2602 8.947055 AAAGCCGAGCAAATAATGATTATTTT 57.053 26.923 17.88 7.34 42.32 1.82
2322 2605 6.204688 TCGAAAGCCGAGCAAATAATGATTAT 59.795 34.615 0.00 0.00 43.23 1.28
2323 2606 5.525745 TCGAAAGCCGAGCAAATAATGATTA 59.474 36.000 0.00 0.00 43.23 1.75
2344 2627 2.036731 TCTCCCGGCTTCCTTCGA 59.963 61.111 0.00 0.00 0.00 3.71
2351 2635 1.993948 GGGTTAGGTCTCCCGGCTT 60.994 63.158 0.00 0.00 33.97 4.35
2388 2672 1.358725 CGATGAAAAAGAGGCGGCGA 61.359 55.000 12.98 0.00 0.00 5.54
2437 2721 0.876342 GGGTTGACGGAGATGCGATC 60.876 60.000 0.00 0.00 0.00 3.69
2462 2746 1.344114 AGGGCGTAGGTTGTACGAAAA 59.656 47.619 8.69 0.00 42.94 2.29
2465 2749 1.065491 TCTAGGGCGTAGGTTGTACGA 60.065 52.381 13.77 0.00 42.94 3.43
2477 2762 1.614413 GATCCTACTTGGTCTAGGGCG 59.386 57.143 0.00 0.00 37.07 6.13
2540 2825 2.594592 GGGTGGTGGTGCAGACAC 60.595 66.667 11.94 11.94 46.66 3.67
2546 2831 2.193536 GTGAGTTGGGTGGTGGTGC 61.194 63.158 0.00 0.00 0.00 5.01
2551 2836 1.839747 TAGCGGTGAGTTGGGTGGT 60.840 57.895 0.00 0.00 0.00 4.16
2561 2846 3.376078 GGTGACGGGTAGCGGTGA 61.376 66.667 10.08 0.00 0.00 4.02
2563 2848 3.688159 GTGGTGACGGGTAGCGGT 61.688 66.667 4.65 4.65 0.00 5.68
2567 2852 4.789075 CGCGGTGGTGACGGGTAG 62.789 72.222 0.00 0.00 39.12 3.18
2588 2873 2.279120 CGCGATGGAGAGAGGCAC 60.279 66.667 0.00 0.00 0.00 5.01
2612 2897 3.075005 TAGTGCGGTGGGGAGAGC 61.075 66.667 0.00 0.00 0.00 4.09
2626 2911 1.982938 GCCGGTGGAGTCCAGTAGT 60.983 63.158 13.61 0.00 32.34 2.73
2628 2913 2.682494 GGCCGGTGGAGTCCAGTA 60.682 66.667 13.61 0.00 32.34 2.74
2629 2914 4.954118 TGGCCGGTGGAGTCCAGT 62.954 66.667 13.61 0.00 32.34 4.00
2716 3016 2.910479 ACGGCAGTGACGAGGTCA 60.910 61.111 28.44 0.00 40.50 4.02
2846 3146 1.442148 GTGGTGTAGAGGCCCGATC 59.558 63.158 0.00 0.00 0.00 3.69
3570 4003 4.675303 CCAGGGTGGAGTGGGGGA 62.675 72.222 0.00 0.00 40.96 4.81
3589 4022 2.587753 GCAGCTGCGGCGGTATAA 60.588 61.111 25.23 0.00 44.37 0.98
3665 4098 2.606961 CGGAAAGCGCACTTGCTGA 61.607 57.895 11.47 0.00 46.60 4.26
3735 4168 0.607217 TCTCCAGCCGACGTGTAGAA 60.607 55.000 0.00 0.00 0.00 2.10
3759 4192 2.125512 CTGTAGAGTGGGTGCCGC 60.126 66.667 0.00 0.00 0.00 6.53
3773 4206 2.722201 GGAGGGATCGCCGAACTGT 61.722 63.158 6.09 0.00 33.83 3.55
3851 4285 4.070552 GGCTCGGAGGTGCGAAGT 62.071 66.667 7.20 0.00 0.00 3.01
3884 4318 2.184579 GGCGGTGTCTGAGTAGGC 59.815 66.667 0.00 0.00 0.00 3.93
3887 4321 4.111016 CGCGGCGGTGTCTGAGTA 62.111 66.667 15.84 0.00 0.00 2.59
4174 4609 0.104409 AGTGGAGGTGAAGGGAAGGT 60.104 55.000 0.00 0.00 0.00 3.50
4193 4628 0.534203 GGTCGGCAAAGTCCTGAACA 60.534 55.000 0.00 0.00 0.00 3.18
4423 4859 2.670905 CTGCGTGTAAACATCCGATCAA 59.329 45.455 0.00 0.00 0.00 2.57
4426 4862 1.651987 CCTGCGTGTAAACATCCGAT 58.348 50.000 0.00 0.00 0.00 4.18
4427 4863 0.390603 CCCTGCGTGTAAACATCCGA 60.391 55.000 0.00 0.00 0.00 4.55
4538 4980 0.685785 TTGAAGCACAACCCTTGGCA 60.686 50.000 0.00 0.00 33.18 4.92
4747 5190 2.597217 CTCCCCGCCTGCACAAAA 60.597 61.111 0.00 0.00 0.00 2.44
4836 5280 7.896383 AACAATAAGATAATTGGGCTAAGCA 57.104 32.000 2.05 0.00 40.48 3.91
4923 8029 5.571784 TGATTGCTTCTTGCTTGATTAGG 57.428 39.130 0.00 0.00 43.37 2.69
4964 8073 2.873557 TAGGTCTCCCGGCTCCCTTG 62.874 65.000 0.00 0.00 35.12 3.61
5056 8169 1.810030 GGGTTGACGGAGATGCGAC 60.810 63.158 0.00 0.00 0.00 5.19
5084 8197 2.954318 GTCTAGGGCATAGGTTGTACGA 59.046 50.000 6.32 0.00 31.83 3.43
5113 8226 9.723447 ATCTTATCATTAATACGAGCTACGATG 57.277 33.333 11.64 5.57 45.77 3.84
5124 8237 9.515226 TGGCCCAAGTTATCTTATCATTAATAC 57.485 33.333 0.00 0.00 32.07 1.89
5128 8241 9.515226 GTTATGGCCCAAGTTATCTTATCATTA 57.485 33.333 0.00 0.00 32.07 1.90
5129 8242 8.227507 AGTTATGGCCCAAGTTATCTTATCATT 58.772 33.333 0.00 0.00 32.07 2.57
5130 8243 7.759607 AGTTATGGCCCAAGTTATCTTATCAT 58.240 34.615 0.00 0.00 32.07 2.45
5131 8244 7.147391 TGAGTTATGGCCCAAGTTATCTTATCA 60.147 37.037 0.00 0.00 32.07 2.15
5132 8245 7.173390 GTGAGTTATGGCCCAAGTTATCTTATC 59.827 40.741 0.00 0.00 32.07 1.75
5133 8246 6.998673 GTGAGTTATGGCCCAAGTTATCTTAT 59.001 38.462 0.00 0.00 32.07 1.73
5134 8247 6.157994 AGTGAGTTATGGCCCAAGTTATCTTA 59.842 38.462 0.00 0.00 32.07 2.10
5135 8248 5.044846 AGTGAGTTATGGCCCAAGTTATCTT 60.045 40.000 0.00 0.00 0.00 2.40
5136 8249 4.475016 AGTGAGTTATGGCCCAAGTTATCT 59.525 41.667 0.00 0.00 0.00 1.98
5137 8250 4.576463 CAGTGAGTTATGGCCCAAGTTATC 59.424 45.833 0.00 0.00 0.00 1.75
5138 8251 4.526970 CAGTGAGTTATGGCCCAAGTTAT 58.473 43.478 0.00 0.00 0.00 1.89
5139 8252 3.308117 CCAGTGAGTTATGGCCCAAGTTA 60.308 47.826 0.00 0.00 0.00 2.24
5140 8253 2.555227 CCAGTGAGTTATGGCCCAAGTT 60.555 50.000 0.00 0.00 0.00 2.66
5141 8254 1.004745 CCAGTGAGTTATGGCCCAAGT 59.995 52.381 0.00 0.00 0.00 3.16
5142 8255 1.683011 CCCAGTGAGTTATGGCCCAAG 60.683 57.143 0.00 0.00 35.10 3.61
5143 8256 0.331278 CCCAGTGAGTTATGGCCCAA 59.669 55.000 0.00 0.00 35.10 4.12
5144 8257 1.998530 CCCAGTGAGTTATGGCCCA 59.001 57.895 0.00 0.00 35.10 5.36
5145 8258 1.453928 GCCCAGTGAGTTATGGCCC 60.454 63.158 0.00 0.00 36.07 5.80
5146 8259 0.837272 TAGCCCAGTGAGTTATGGCC 59.163 55.000 0.00 0.00 43.18 5.36
5147 8260 2.683362 GTTTAGCCCAGTGAGTTATGGC 59.317 50.000 0.00 0.00 42.48 4.40
5148 8261 3.279434 GGTTTAGCCCAGTGAGTTATGG 58.721 50.000 0.00 0.00 36.27 2.74
5161 8274 2.433436 CGGCATATTAGGGGTTTAGCC 58.567 52.381 0.00 0.00 37.54 3.93
5162 8275 2.224695 ACCGGCATATTAGGGGTTTAGC 60.225 50.000 0.00 0.00 0.00 3.09
5163 8276 3.071892 TGACCGGCATATTAGGGGTTTAG 59.928 47.826 0.00 0.00 0.00 1.85
5164 8277 3.047115 TGACCGGCATATTAGGGGTTTA 58.953 45.455 0.00 0.00 0.00 2.01
5165 8278 1.847737 TGACCGGCATATTAGGGGTTT 59.152 47.619 0.00 0.00 0.00 3.27
5166 8279 1.513858 TGACCGGCATATTAGGGGTT 58.486 50.000 0.00 0.00 0.00 4.11
5167 8280 1.742308 ATGACCGGCATATTAGGGGT 58.258 50.000 0.00 0.00 34.82 4.95
5168 8281 3.008594 TGTTATGACCGGCATATTAGGGG 59.991 47.826 16.09 0.00 39.15 4.79
5169 8282 4.280436 TGTTATGACCGGCATATTAGGG 57.720 45.455 16.09 0.00 39.15 3.53
5170 8283 5.333798 CGTTTGTTATGACCGGCATATTAGG 60.334 44.000 16.09 7.10 39.15 2.69
5171 8284 5.333798 CCGTTTGTTATGACCGGCATATTAG 60.334 44.000 16.09 7.72 39.15 1.73
5172 8285 4.512198 CCGTTTGTTATGACCGGCATATTA 59.488 41.667 16.09 8.23 39.15 0.98
5173 8286 3.314080 CCGTTTGTTATGACCGGCATATT 59.686 43.478 16.09 0.00 39.15 1.28
5174 8287 2.875933 CCGTTTGTTATGACCGGCATAT 59.124 45.455 16.09 5.40 39.15 1.78
5175 8288 2.093606 TCCGTTTGTTATGACCGGCATA 60.094 45.455 0.00 7.99 38.44 3.14
5176 8289 1.091537 CCGTTTGTTATGACCGGCAT 58.908 50.000 14.43 14.43 41.08 4.40
5177 8290 0.035036 TCCGTTTGTTATGACCGGCA 59.965 50.000 0.00 0.00 38.54 5.69
5178 8291 0.445043 GTCCGTTTGTTATGACCGGC 59.555 55.000 0.00 0.00 38.54 6.13
5179 8292 1.461897 GTGTCCGTTTGTTATGACCGG 59.538 52.381 0.00 0.00 39.98 5.28
5180 8293 1.461897 GGTGTCCGTTTGTTATGACCG 59.538 52.381 0.00 0.00 0.00 4.79
5181 8294 2.482721 CAGGTGTCCGTTTGTTATGACC 59.517 50.000 0.00 0.00 0.00 4.02
5182 8295 3.395639 TCAGGTGTCCGTTTGTTATGAC 58.604 45.455 0.00 0.00 0.00 3.06
5183 8296 3.755112 TCAGGTGTCCGTTTGTTATGA 57.245 42.857 0.00 0.00 0.00 2.15
5184 8297 5.049060 TGAAATCAGGTGTCCGTTTGTTATG 60.049 40.000 0.00 0.00 0.00 1.90
5185 8298 5.067273 TGAAATCAGGTGTCCGTTTGTTAT 58.933 37.500 0.00 0.00 0.00 1.89
5186 8299 4.452825 TGAAATCAGGTGTCCGTTTGTTA 58.547 39.130 0.00 0.00 0.00 2.41
5187 8300 3.283751 TGAAATCAGGTGTCCGTTTGTT 58.716 40.909 0.00 0.00 0.00 2.83
5188 8301 2.925724 TGAAATCAGGTGTCCGTTTGT 58.074 42.857 0.00 0.00 0.00 2.83
5189 8302 4.083581 GATGAAATCAGGTGTCCGTTTG 57.916 45.455 0.00 0.00 44.70 2.93
5254 8411 4.788679 TGATCACAGATTCATGCTTGGAT 58.211 39.130 0.00 0.00 0.00 3.41
5294 8451 8.828644 CAATTCAACAAAATGAATGGAGAACAA 58.171 29.630 3.52 0.00 46.57 2.83
5393 8551 4.041938 ACAAGGGCATGGAAAATGTTCAAT 59.958 37.500 0.00 0.00 35.25 2.57
5413 8571 4.262420 GGAGCCCTGCAAAGATAAAAACAA 60.262 41.667 0.00 0.00 0.00 2.83
5494 8653 6.052360 CAGAGGAAACCTTCTTATTAGCTCC 58.948 44.000 0.00 0.00 31.76 4.70
5570 8729 4.461450 ACACCTCAGGATATAGAGAGCA 57.539 45.455 0.00 0.00 33.74 4.26
5655 8814 3.517296 TGTTGCCCCATTTCTGTTCTA 57.483 42.857 0.00 0.00 0.00 2.10
5734 8893 2.280524 TTGGTGAGGTCGTTGGCG 60.281 61.111 0.00 0.00 39.92 5.69
5797 8956 1.356624 GCAATGGCGTATGTCCAGC 59.643 57.895 4.73 0.88 36.98 4.85
5917 9076 2.623915 CGAGTCACGGGGAAGTCGT 61.624 63.158 5.36 0.00 41.93 4.34
5927 9086 1.004595 TAGTCATCGGTCGAGTCACG 58.995 55.000 0.00 0.00 44.09 4.35
5929 9088 1.339342 TGGTAGTCATCGGTCGAGTCA 60.339 52.381 0.00 0.00 0.00 3.41
5978 9137 2.363683 CCTGATTTCTTCCTCTGTGCC 58.636 52.381 0.00 0.00 0.00 5.01
6061 9758 2.070783 GGACTGCGGTAAAAATCGTCA 58.929 47.619 0.00 0.00 0.00 4.35
6139 9836 3.428316 GGTCTTCTCATCAGAGGAACGTC 60.428 52.174 0.00 0.00 42.34 4.34
6142 9839 4.442753 GGATGGTCTTCTCATCAGAGGAAC 60.443 50.000 6.43 0.00 41.83 3.62
6300 11788 7.027161 GGAAAAATAGAGCGCAAATTTACTCA 58.973 34.615 11.47 4.73 0.00 3.41
6327 11815 4.083802 AGTGCAAATTTACTCTTCGCTCAC 60.084 41.667 0.00 0.00 0.00 3.51
6346 11834 2.907910 CAGTATTGACCTGCAAGTGC 57.092 50.000 0.00 0.00 40.42 4.40
6356 11844 8.648557 TCATAAATAGTGTCTGCAGTATTGAC 57.351 34.615 14.67 4.75 45.48 3.18
6399 11887 7.067372 ACACATGTCATATGTTTCATTCCGAAT 59.933 33.333 1.90 0.00 32.32 3.34
6400 11888 6.374053 ACACATGTCATATGTTTCATTCCGAA 59.626 34.615 1.90 0.00 0.00 4.30
6401 11889 5.879777 ACACATGTCATATGTTTCATTCCGA 59.120 36.000 1.90 0.00 0.00 4.55
6402 11890 5.967088 CACACATGTCATATGTTTCATTCCG 59.033 40.000 1.90 0.00 0.00 4.30
6472 11961 1.553706 CTGCAAATCAAAGGAGGCCT 58.446 50.000 3.86 3.86 33.87 5.19
6475 11964 4.813750 AATTCCTGCAAATCAAAGGAGG 57.186 40.909 0.00 0.00 43.90 4.30
6483 11972 8.587608 TCATATCCCATAAAATTCCTGCAAATC 58.412 33.333 0.00 0.00 0.00 2.17
6484 11973 8.495160 TCATATCCCATAAAATTCCTGCAAAT 57.505 30.769 0.00 0.00 0.00 2.32
6511 12011 9.190317 AGCTGTAAAGAAAATTTTCCTATAGGG 57.810 33.333 24.01 12.13 37.92 3.53
6523 12023 5.523552 GTGCCAAACAAGCTGTAAAGAAAAT 59.476 36.000 0.00 0.00 0.00 1.82
6535 12035 0.609662 ATGATGGGTGCCAAACAAGC 59.390 50.000 0.00 0.00 36.95 4.01
6549 12049 4.338964 TCATGAATTCCGACCCAAATGATG 59.661 41.667 2.27 0.00 0.00 3.07
6576 12076 5.105187 TGTTGGTGTTGGAATTCACAATTGA 60.105 36.000 13.59 0.00 36.43 2.57
6591 12091 3.465871 GGCAATCAAACATGTTGGTGTT 58.534 40.909 12.82 6.23 43.78 3.32
6614 12114 6.669125 AATGAATTCTGACAACCAATTCCA 57.331 33.333 7.05 0.00 36.20 3.53
6623 12123 6.320926 TGGAACTGTGAAATGAATTCTGACAA 59.679 34.615 7.05 0.00 38.92 3.18
6654 12154 3.742433 TTGGTTTAAGTACCGGTTCGA 57.258 42.857 15.04 0.00 41.28 3.71
6677 12177 2.664402 ATGGTAGCTTATTGGCCAGG 57.336 50.000 5.11 0.00 32.28 4.45
6680 12180 2.239400 GGGAATGGTAGCTTATTGGCC 58.761 52.381 0.00 0.00 0.00 5.36
6682 12182 3.593442 TGGGGAATGGTAGCTTATTGG 57.407 47.619 0.00 0.00 0.00 3.16
6698 12198 2.435805 TCGAGAGAGATTGGATTTGGGG 59.564 50.000 0.00 0.00 34.84 4.96
6715 12215 1.880340 GCAAGATGAGGGCGTCGAG 60.880 63.158 0.00 0.00 35.16 4.04
6761 12261 2.974698 GAATCTCATGGGCGGCGG 60.975 66.667 9.78 0.00 0.00 6.13
6771 12271 2.202610 CGGCGACAGCGAATCTCA 60.203 61.111 0.00 0.00 46.35 3.27
6780 12280 4.680237 TTGGACTGGCGGCGACAG 62.680 66.667 39.13 39.13 45.62 3.51
6793 12293 4.033776 CGGCCTGCCTCCTTTGGA 62.034 66.667 6.60 0.00 0.00 3.53
6819 12319 1.751927 GCTCTGCTTGTGGGGGATG 60.752 63.158 0.00 0.00 0.00 3.51
6822 12322 1.751927 GATGCTCTGCTTGTGGGGG 60.752 63.158 0.00 0.00 0.00 5.40
6829 12329 1.550524 TGACGTTAGGATGCTCTGCTT 59.449 47.619 0.00 0.00 0.00 3.91
6839 12339 1.550130 CCCTTGGCCTGACGTTAGGA 61.550 60.000 29.09 7.13 40.42 2.94
6845 12345 2.359975 GGTTCCCTTGGCCTGACG 60.360 66.667 3.32 0.00 0.00 4.35
6869 12369 2.040464 GGGGCTGGAGAGATGGGA 60.040 66.667 0.00 0.00 0.00 4.37
6871 12371 2.040043 AGGGGGCTGGAGAGATGG 60.040 66.667 0.00 0.00 0.00 3.51
6882 12382 1.602771 GTGAGGTACAAGAGGGGGC 59.397 63.158 0.00 0.00 0.00 5.80
6905 12405 6.364435 GTGTTTTCTACTACGTTTCCCACTAG 59.636 42.308 0.00 0.00 0.00 2.57
6937 12437 6.012508 TCTGGGAACTTGATTTGTAGGAGAAT 60.013 38.462 0.00 0.00 0.00 2.40
6947 12447 7.405292 TCATAGTGATTCTGGGAACTTGATTT 58.595 34.615 0.00 0.00 0.00 2.17
6962 12462 5.221722 ACCCATACGCATCTTCATAGTGATT 60.222 40.000 0.00 0.00 0.00 2.57
6979 12479 6.042781 TGGTAAGGATCACATCTAACCCATAC 59.957 42.308 0.00 0.00 0.00 2.39
6982 12482 4.367166 TGGTAAGGATCACATCTAACCCA 58.633 43.478 0.00 0.00 0.00 4.51
6983 12483 4.743955 GCTGGTAAGGATCACATCTAACCC 60.744 50.000 0.00 0.00 0.00 4.11
6992 12492 1.537135 GCTCGAGCTGGTAAGGATCAC 60.537 57.143 29.88 0.00 38.21 3.06
7005 12505 1.932511 CTCTTCTTCCATTGCTCGAGC 59.067 52.381 30.42 30.42 42.50 5.03
7014 12514 2.556114 CCTTGGCCAACTCTTCTTCCAT 60.556 50.000 16.05 0.00 0.00 3.41
7015 12515 1.202927 CCTTGGCCAACTCTTCTTCCA 60.203 52.381 16.05 0.00 0.00 3.53
7017 12517 2.155279 GTCCTTGGCCAACTCTTCTTC 58.845 52.381 16.05 0.00 0.00 2.87
7030 12530 1.153289 CTGGATCGGCAGTCCTTGG 60.153 63.158 6.70 0.00 36.68 3.61
7035 12535 0.250081 GGGAATCTGGATCGGCAGTC 60.250 60.000 0.00 0.00 0.00 3.51
7038 12538 2.821685 CGGGAATCTGGATCGGCA 59.178 61.111 0.00 0.00 0.00 5.69
7040 12540 1.301244 CTGCGGGAATCTGGATCGG 60.301 63.158 0.00 0.00 0.00 4.18
7041 12541 1.958205 GCTGCGGGAATCTGGATCG 60.958 63.158 0.00 0.00 0.00 3.69
7043 12543 0.683973 CTAGCTGCGGGAATCTGGAT 59.316 55.000 0.00 0.00 0.00 3.41
7045 12545 0.465705 TTCTAGCTGCGGGAATCTGG 59.534 55.000 0.00 0.00 0.00 3.86
7084 12584 5.780984 TCTTCGTTTAAGGGAGAAACTCTC 58.219 41.667 0.00 0.00 37.08 3.20
7098 12598 5.637810 AGATCGTGCTTTCAATCTTCGTTTA 59.362 36.000 0.00 0.00 0.00 2.01
7117 12617 0.030908 GCAACCCGGTAGAGAGATCG 59.969 60.000 0.00 0.00 0.00 3.69
7120 12620 1.592400 CGTGCAACCCGGTAGAGAGA 61.592 60.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.