Multiple sequence alignment - TraesCS7D01G380900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G380900 chr7D 100.000 9944 0 0 1 9944 494747410 494757353 0.000000e+00 18364.0
1 TraesCS7D01G380900 chr7D 83.717 608 54 35 9135 9736 494767168 494767736 5.290000e-147 532.0
2 TraesCS7D01G380900 chr7D 92.611 203 15 0 9732 9934 494858710 494858912 9.770000e-75 292.0
3 TraesCS7D01G380900 chr7D 93.367 196 11 1 1155 1350 105206132 105206325 1.260000e-73 289.0
4 TraesCS7D01G380900 chr7B 95.919 7474 194 40 1842 9263 522720777 522728191 0.000000e+00 12009.0
5 TraesCS7D01G380900 chr7B 92.564 1802 79 29 1 1796 522719024 522720776 0.000000e+00 2534.0
6 TraesCS7D01G380900 chr7B 89.015 619 43 12 9338 9934 522728190 522728805 0.000000e+00 743.0
7 TraesCS7D01G380900 chr7B 89.236 288 18 4 1070 1351 750221719 750221999 2.060000e-91 348.0
8 TraesCS7D01G380900 chr7B 92.130 216 14 2 1134 1349 411384873 411385085 1.620000e-77 302.0
9 TraesCS7D01G380900 chr7B 93.491 169 10 1 2375 2543 568676616 568676449 5.960000e-62 250.0
10 TraesCS7D01G380900 chr7A 95.771 5320 157 24 933 6226 560304557 560309834 0.000000e+00 8516.0
11 TraesCS7D01G380900 chr7A 94.605 3114 94 21 6225 9301 560309938 560313014 0.000000e+00 4752.0
12 TraesCS7D01G380900 chr7A 90.241 789 33 17 90 856 560303552 560304318 0.000000e+00 990.0
13 TraesCS7D01G380900 chr7A 90.388 541 32 10 9334 9862 560313301 560313833 0.000000e+00 693.0
14 TraesCS7D01G380900 chr7A 90.625 288 14 4 1070 1351 706304580 706304300 4.390000e-98 370.0
15 TraesCS7D01G380900 chr7A 91.200 250 19 3 9686 9933 560867900 560868148 4.450000e-88 337.0
16 TraesCS7D01G380900 chr7A 84.848 297 30 5 9528 9810 560585500 560585795 1.630000e-72 285.0
17 TraesCS7D01G380900 chr7A 97.802 91 2 0 7844 7934 560585406 560585496 3.720000e-34 158.0
18 TraesCS7D01G380900 chr7A 90.244 41 4 0 4717 4757 471569836 471569876 5.000000e-03 54.7
19 TraesCS7D01G380900 chr4A 82.224 1502 190 39 6263 7724 723606428 723607892 0.000000e+00 1223.0
20 TraesCS7D01G380900 chr4A 82.619 1214 128 46 3920 5061 723603103 723604305 0.000000e+00 996.0
21 TraesCS7D01G380900 chr4A 84.078 358 40 13 8408 8755 723608815 723609165 7.450000e-86 329.0
22 TraesCS7D01G380900 chr4A 79.529 425 65 13 7676 8090 723607951 723608363 5.880000e-72 283.0
23 TraesCS7D01G380900 chr4A 80.137 292 41 14 5701 5979 723605890 723606177 1.690000e-47 202.0
24 TraesCS7D01G380900 chr4A 90.244 41 4 0 4723 4763 395039920 395039880 5.000000e-03 54.7
25 TraesCS7D01G380900 chr4A 90.244 41 4 0 4723 4763 625645547 625645507 5.000000e-03 54.7
26 TraesCS7D01G380900 chr2A 89.083 229 12 4 1070 1292 4811514 4811735 1.270000e-68 272.0
27 TraesCS7D01G380900 chr2A 90.244 41 4 0 4723 4763 628720831 628720791 5.000000e-03 54.7
28 TraesCS7D01G380900 chr3A 94.706 170 8 1 2373 2541 34532446 34532615 7.660000e-66 263.0
29 TraesCS7D01G380900 chr3B 94.118 170 9 1 2373 2541 42630815 42630984 3.560000e-64 257.0
30 TraesCS7D01G380900 chr5D 93.491 169 9 2 2374 2541 498719010 498718843 5.960000e-62 250.0
31 TraesCS7D01G380900 chr3D 93.064 173 8 3 2373 2541 25132932 25133104 5.960000e-62 250.0
32 TraesCS7D01G380900 chr3D 93.491 169 10 1 2375 2542 426451858 426452026 5.960000e-62 250.0
33 TraesCS7D01G380900 chr1D 93.491 169 10 1 2374 2541 175819834 175820002 5.960000e-62 250.0
34 TraesCS7D01G380900 chr4B 100.000 31 0 0 4727 4757 596770023 596770053 3.880000e-04 58.4
35 TraesCS7D01G380900 chr6A 90.244 41 4 0 4717 4757 554811993 554812033 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G380900 chr7D 494747410 494757353 9943 False 18364.000000 18364 100.000000 1 9944 1 chr7D.!!$F2 9943
1 TraesCS7D01G380900 chr7D 494767168 494767736 568 False 532.000000 532 83.717000 9135 9736 1 chr7D.!!$F3 601
2 TraesCS7D01G380900 chr7B 522719024 522728805 9781 False 5095.333333 12009 92.499333 1 9934 3 chr7B.!!$F3 9933
3 TraesCS7D01G380900 chr7A 560303552 560313833 10281 False 3737.750000 8516 92.751250 90 9862 4 chr7A.!!$F3 9772
4 TraesCS7D01G380900 chr4A 723603103 723609165 6062 False 606.600000 1223 81.717400 3920 8755 5 chr4A.!!$F1 4835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 829 0.104120 TCTCTCTCTCTCGCTCCTCG 59.896 60.000 0.00 0.00 40.15 4.63 F
801 830 1.498865 CTCTCTCTCTCGCTCCTCGC 61.499 65.000 0.00 0.00 38.27 5.03 F
1813 2006 0.032130 ACTACACGAGCACTGTGGTG 59.968 55.000 18.24 14.67 45.53 4.17 F
1819 2012 0.036952 CGAGCACTGTGGTGATTCCT 60.037 55.000 18.24 0.00 42.53 3.36 F
1878 2071 0.729116 CACTGAATCTTGGCGCGAAT 59.271 50.000 12.10 0.00 0.00 3.34 F
2918 3133 1.900498 GAGCAGGCATGGCATACCC 60.900 63.158 22.64 10.36 33.59 3.69 F
4277 4507 1.944024 CTTTTGTAACGTGTGCCAGGA 59.056 47.619 0.00 0.00 0.00 3.86 F
5026 5315 0.040425 GTTGTGCTACTTTGGCCGTG 60.040 55.000 0.00 0.00 0.00 4.94 F
5131 5852 2.233431 TGAAGCCAAAAATTCCCATCCG 59.767 45.455 0.00 0.00 0.00 4.18 F
5609 6903 3.055819 TGTCAGCTTTCTACCATCTCACC 60.056 47.826 0.00 0.00 0.00 4.02 F
6187 7526 3.214328 GTTGTCCTGTTGATGTTCCAGT 58.786 45.455 0.00 0.00 0.00 4.00 F
7153 8623 4.454728 TTTAGGATTGCATGCTTGTTCC 57.545 40.909 20.33 17.78 31.56 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1989 0.966179 ATCACCACAGTGCTCGTGTA 59.034 50.000 7.93 0.00 44.16 2.90 R
2062 2265 2.838202 TCCTACATGGGAAGAACACTCC 59.162 50.000 0.00 0.00 36.20 3.85 R
3410 3625 3.686241 ACAAATGATGTCCTGTGATGTCG 59.314 43.478 0.00 0.00 37.96 4.35 R
3545 3760 7.521748 GCATGGATCAAATGTTAGAGATGGAAG 60.522 40.741 8.83 0.00 0.00 3.46 R
3871 4086 3.589288 AGGAGCTGACCCAGAAATACTTT 59.411 43.478 0.00 0.00 32.44 2.66 R
4618 4876 5.352569 CGGAAGAAAGAACAATAGAGTGCAT 59.647 40.000 0.00 0.00 0.00 3.96 R
5798 7118 0.031857 CAATGCAAACCAGTTCCGCA 59.968 50.000 9.26 9.26 36.03 5.69 R
6981 8451 1.477553 CCACCCATGCACATTTAGCT 58.522 50.000 0.00 0.00 0.00 3.32 R
7030 8500 3.070302 TGGCACACTGACACACATAAGTA 59.930 43.478 0.00 0.00 24.43 2.24 R
7332 8802 2.355010 AGCCTTGGATAATGCCTGAC 57.645 50.000 0.00 0.00 0.00 3.51 R
7813 9410 1.217882 CCGCGTTAAAGCCTGGATAG 58.782 55.000 4.92 0.00 0.00 2.08 R
9085 10897 1.200252 TGGTGACAACAACCAACAACG 59.800 47.619 0.00 0.00 37.44 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 6.183360 ACCAAATTGGAAATCTTGCAACAAAC 60.183 34.615 20.25 0.00 43.81 2.93
43 44 5.655893 AATTGGAAATCTTGCAACAAACG 57.344 34.783 0.00 0.00 43.81 3.60
59 60 1.462616 AACGCCAGCATATTCAAGCA 58.537 45.000 0.00 0.00 0.00 3.91
62 63 1.683943 GCCAGCATATTCAAGCAGGA 58.316 50.000 0.00 0.00 39.51 3.86
142 143 5.732633 TCCATTTATGTGGGAGCAATTTTG 58.267 37.500 0.00 0.00 39.80 2.44
162 163 0.663153 GGCCGACATGAATGTTAGCC 59.337 55.000 16.98 16.98 45.54 3.93
172 173 6.512297 ACATGAATGTTAGCCTTTCGTTTTT 58.488 32.000 0.00 0.00 37.90 1.94
188 189 5.816919 TCGTTTTTCTGACCTTCAATCAAC 58.183 37.500 0.00 0.00 0.00 3.18
189 190 4.976116 CGTTTTTCTGACCTTCAATCAACC 59.024 41.667 0.00 0.00 0.00 3.77
190 191 5.449862 CGTTTTTCTGACCTTCAATCAACCA 60.450 40.000 0.00 0.00 0.00 3.67
191 192 6.337356 GTTTTTCTGACCTTCAATCAACCAA 58.663 36.000 0.00 0.00 0.00 3.67
192 193 6.729690 TTTTCTGACCTTCAATCAACCAAT 57.270 33.333 0.00 0.00 0.00 3.16
193 194 5.964958 TTCTGACCTTCAATCAACCAATC 57.035 39.130 0.00 0.00 0.00 2.67
194 195 4.984295 TCTGACCTTCAATCAACCAATCA 58.016 39.130 0.00 0.00 0.00 2.57
195 196 5.384336 TCTGACCTTCAATCAACCAATCAA 58.616 37.500 0.00 0.00 0.00 2.57
233 235 6.477742 ACAAAAAGAAAAGAAAAATCAGCGC 58.522 32.000 0.00 0.00 0.00 5.92
245 247 5.895216 AAAATCAGCGCAAAGAAAGAAAG 57.105 34.783 11.47 0.00 0.00 2.62
288 290 8.040727 GGAGGCAACACTAAAATCCATTAAAAT 58.959 33.333 0.00 0.00 41.41 1.82
615 636 5.063880 AGGCGTTACACTTGAATTTTCTCT 58.936 37.500 0.00 0.00 0.00 3.10
616 637 5.179555 AGGCGTTACACTTGAATTTTCTCTC 59.820 40.000 0.00 0.00 0.00 3.20
620 641 3.412386 ACACTTGAATTTTCTCTCCCCG 58.588 45.455 0.00 0.00 0.00 5.73
621 642 3.181443 ACACTTGAATTTTCTCTCCCCGT 60.181 43.478 0.00 0.00 0.00 5.28
622 643 4.041198 ACACTTGAATTTTCTCTCCCCGTA 59.959 41.667 0.00 0.00 0.00 4.02
623 644 4.392138 CACTTGAATTTTCTCTCCCCGTAC 59.608 45.833 0.00 0.00 0.00 3.67
624 645 3.241067 TGAATTTTCTCTCCCCGTACG 57.759 47.619 8.69 8.69 0.00 3.67
625 646 2.827322 TGAATTTTCTCTCCCCGTACGA 59.173 45.455 18.76 0.00 0.00 3.43
626 647 3.119245 TGAATTTTCTCTCCCCGTACGAG 60.119 47.826 18.76 2.34 0.00 4.18
787 816 1.546476 ACGACGCCATTTTCTCTCTCT 59.454 47.619 0.00 0.00 0.00 3.10
800 829 0.104120 TCTCTCTCTCTCGCTCCTCG 59.896 60.000 0.00 0.00 40.15 4.63
801 830 1.498865 CTCTCTCTCTCGCTCCTCGC 61.499 65.000 0.00 0.00 38.27 5.03
1182 1373 2.490217 CGCAAGTCCGGATCGACT 59.510 61.111 7.81 0.00 45.12 4.18
1356 1547 4.087892 ATCAAGGCCACGCTCGCT 62.088 61.111 5.01 0.00 0.00 4.93
1656 1847 1.812571 CTGTGGTGGTATGCTGGTTTC 59.187 52.381 0.00 0.00 0.00 2.78
1712 1905 4.676586 GCCGTTTCCGTTGCCGTG 62.677 66.667 0.00 0.00 0.00 4.94
1812 2005 0.750850 AACTACACGAGCACTGTGGT 59.249 50.000 12.95 12.95 41.64 4.16
1813 2006 0.032130 ACTACACGAGCACTGTGGTG 59.968 55.000 18.24 14.67 45.53 4.17
1814 2007 0.313987 CTACACGAGCACTGTGGTGA 59.686 55.000 18.24 3.21 45.61 4.02
1815 2008 0.966179 TACACGAGCACTGTGGTGAT 59.034 50.000 18.24 1.85 45.35 3.06
1816 2009 0.106708 ACACGAGCACTGTGGTGATT 59.893 50.000 18.24 0.00 42.53 2.57
1817 2010 0.792640 CACGAGCACTGTGGTGATTC 59.207 55.000 18.24 1.72 42.53 2.52
1818 2011 0.320771 ACGAGCACTGTGGTGATTCC 60.321 55.000 18.24 1.34 42.53 3.01
1819 2012 0.036952 CGAGCACTGTGGTGATTCCT 60.037 55.000 18.24 0.00 42.53 3.36
1820 2013 1.609061 CGAGCACTGTGGTGATTCCTT 60.609 52.381 18.24 0.00 42.53 3.36
1821 2014 2.508526 GAGCACTGTGGTGATTCCTTT 58.491 47.619 18.24 0.00 42.53 3.11
1822 2015 2.887152 GAGCACTGTGGTGATTCCTTTT 59.113 45.455 18.24 0.00 42.53 2.27
1823 2016 3.299503 AGCACTGTGGTGATTCCTTTTT 58.700 40.909 12.27 0.00 45.61 1.94
1878 2071 0.729116 CACTGAATCTTGGCGCGAAT 59.271 50.000 12.10 0.00 0.00 3.34
1901 2094 8.770010 AATGGGAATATGGGAAATTTACGTAA 57.230 30.769 3.29 3.29 0.00 3.18
2234 2447 4.251268 GGATGCACGTAGAAACTTTAGGT 58.749 43.478 0.00 0.00 0.00 3.08
2433 2648 4.354087 GGTGGGTCTTGGGAAGGATTATAT 59.646 45.833 0.00 0.00 0.00 0.86
2548 2763 3.195661 CAGGCCTGTCCTTCGTTTATAC 58.804 50.000 25.53 0.00 44.75 1.47
2918 3133 1.900498 GAGCAGGCATGGCATACCC 60.900 63.158 22.64 10.36 33.59 3.69
3025 3240 3.556843 GCCAATGCCTAATTGTTTGGTGT 60.557 43.478 0.00 0.00 43.66 4.16
3097 3312 4.760204 GGGCTGCTTTACTTTTAGACTTCA 59.240 41.667 0.00 0.00 0.00 3.02
3410 3625 3.430333 TCAGTTTCCAAAGGCGAAAAC 57.570 42.857 0.00 0.00 31.32 2.43
3545 3760 4.764172 AGTTAATGATGTGAGCTCTGGTC 58.236 43.478 16.19 10.17 0.00 4.02
3830 4045 7.882179 ACTAGCACTTTTGGAAAAATAATCGT 58.118 30.769 0.00 0.00 0.00 3.73
3871 4086 7.333528 AGAAGACAACTATGCAACTGAAAAA 57.666 32.000 0.00 0.00 0.00 1.94
4277 4507 1.944024 CTTTTGTAACGTGTGCCAGGA 59.056 47.619 0.00 0.00 0.00 3.86
4357 4590 5.810080 AGACAGAATATTAGCCAGGTACC 57.190 43.478 2.73 2.73 0.00 3.34
4362 4595 8.097791 ACAGAATATTAGCCAGGTACCTTTTA 57.902 34.615 13.15 2.03 0.00 1.52
4363 4596 8.724310 ACAGAATATTAGCCAGGTACCTTTTAT 58.276 33.333 13.15 4.48 0.00 1.40
4618 4876 3.137176 CCTTCTCTGCCATCTTATCCCAA 59.863 47.826 0.00 0.00 0.00 4.12
4642 4900 4.690748 TGCACTCTATTGTTCTTTCTTCCG 59.309 41.667 0.00 0.00 0.00 4.30
4663 4921 6.989659 TCCGAGGGACATTTATTATGTCTAC 58.010 40.000 15.21 10.02 45.60 2.59
5026 5315 0.040425 GTTGTGCTACTTTGGCCGTG 60.040 55.000 0.00 0.00 0.00 4.94
5131 5852 2.233431 TGAAGCCAAAAATTCCCATCCG 59.767 45.455 0.00 0.00 0.00 4.18
5155 5876 4.331968 TGGAACTTGACAGTCAACTTGTT 58.668 39.130 12.24 14.30 32.21 2.83
5266 5996 7.734538 ACTTTACCATCAATTTTAAATCGCG 57.265 32.000 0.00 0.00 0.00 5.87
5271 6001 4.734854 CCATCAATTTTAAATCGCGTCCTG 59.265 41.667 5.77 0.00 0.00 3.86
5312 6042 5.981088 AACTGGTATTCATCACATTGCAA 57.019 34.783 0.00 0.00 0.00 4.08
5328 6058 3.564053 TGCAATCACATAGGATCTGCA 57.436 42.857 0.00 0.00 38.13 4.41
5342 6072 3.736720 GATCTGCATCCAGCTAATGTGA 58.263 45.455 9.35 8.49 45.94 3.58
5551 6291 9.525826 AAGTCTTTTGAAGGAACATCATAGATT 57.474 29.630 0.00 0.00 35.43 2.40
5552 6292 9.525826 AGTCTTTTGAAGGAACATCATAGATTT 57.474 29.630 0.00 0.00 35.43 2.17
5609 6903 3.055819 TGTCAGCTTTCTACCATCTCACC 60.056 47.826 0.00 0.00 0.00 4.02
5655 6949 4.533707 TCTCCATCTGTTCACATCCTTTCT 59.466 41.667 0.00 0.00 0.00 2.52
5798 7118 5.365619 ACCTTTGTCTGTGTATTTCGACTT 58.634 37.500 0.00 0.00 0.00 3.01
5859 7184 9.946165 AACTTGTCTGTTAATTAGTTAAACTGC 57.054 29.630 0.00 0.00 31.94 4.40
6187 7526 3.214328 GTTGTCCTGTTGATGTTCCAGT 58.786 45.455 0.00 0.00 0.00 4.00
7121 8591 9.517868 TTTGCCAATCCAATGAATTTTATCTTT 57.482 25.926 0.00 0.00 0.00 2.52
7124 8594 9.333724 GCCAATCCAATGAATTTTATCTTTCAT 57.666 29.630 0.00 0.00 42.77 2.57
7153 8623 4.454728 TTTAGGATTGCATGCTTGTTCC 57.545 40.909 20.33 17.78 31.56 3.62
7187 8657 9.834628 TGTTTTGAATGATACTTTTATTCGTCC 57.165 29.630 0.00 0.00 34.40 4.79
7214 8684 7.450014 TGGTATTGCTTAGACATTTTCTTCCAA 59.550 33.333 0.00 0.00 35.55 3.53
7332 8802 6.388278 AGGTTCTAACAGTTAGCTCTTTACG 58.612 40.000 14.73 0.00 33.23 3.18
7471 8947 4.638865 TGCTCTTACTGATTACTCGCTGTA 59.361 41.667 0.00 0.00 0.00 2.74
7683 9168 7.555965 AGAAAACTTTCTTGGTGCTTGTAAAT 58.444 30.769 0.00 0.00 44.70 1.40
7762 9357 6.630443 GCGTCTGATGAAATGACATGATAAAC 59.370 38.462 0.00 0.00 0.00 2.01
7813 9410 8.190784 CCTTTTAATCATAGTGTTTCATGGTCC 58.809 37.037 0.00 0.00 0.00 4.46
7907 9504 4.948062 AAGGGTCTTTATTTACTGGCCT 57.052 40.909 3.32 0.00 0.00 5.19
8021 9623 7.934457 AGACATGCCAAATTATCATAGAACAC 58.066 34.615 0.00 0.00 0.00 3.32
8052 9654 6.150976 TCCAACTAACATAATTGGTGCTTCTG 59.849 38.462 2.39 0.00 42.95 3.02
8067 9669 6.013206 TGGTGCTTCTGTAGAGGGTTAATTTA 60.013 38.462 0.00 0.00 0.00 1.40
8072 9674 9.662947 GCTTCTGTAGAGGGTTAATTTAGTTTA 57.337 33.333 0.00 0.00 0.00 2.01
8193 9931 2.776536 AGGGGAGTTCTTGATCATCCTG 59.223 50.000 11.22 0.00 0.00 3.86
8198 9937 4.161189 GGAGTTCTTGATCATCCTGTCTGA 59.839 45.833 0.00 0.00 0.00 3.27
8265 10009 9.073475 TGTAGACACAGTTTGCCTTTTTAATAT 57.927 29.630 0.00 0.00 0.00 1.28
8522 10298 1.202486 TCGAAGTTGCTGACCTCGTTT 60.202 47.619 10.22 0.00 41.74 3.60
8607 10385 2.635427 AGCTATAAGCCCTTACCAGCTC 59.365 50.000 15.16 0.00 43.77 4.09
8735 10514 8.292448 CAGCAGAATGACAGTAATTTTAACAGT 58.708 33.333 0.00 0.00 39.69 3.55
8774 10579 0.317160 TAGGTTCTCGTGCCACACAG 59.683 55.000 0.00 0.00 33.40 3.66
9085 10897 9.688592 AATGATCATTCTTCTTCTTTTTGTGAC 57.311 29.630 15.36 0.00 0.00 3.67
9245 11061 4.291047 CATCGTTGCAGCTGGTCT 57.709 55.556 17.12 0.00 0.00 3.85
9270 11086 6.934048 AATGCTCAGCTTAATACTTCCTTC 57.066 37.500 0.00 0.00 0.00 3.46
9287 11103 5.223449 TCCTTCGACCTGAATTACTTGTT 57.777 39.130 0.00 0.00 35.63 2.83
9289 11105 4.378459 CCTTCGACCTGAATTACTTGTTGC 60.378 45.833 0.00 0.00 35.63 4.17
9294 11110 5.615544 CGACCTGAATTACTTGTTGCAGAAG 60.616 44.000 6.11 6.11 0.00 2.85
9330 11184 2.222027 GCCTCAAGTAATTCGGGATGG 58.778 52.381 0.00 0.00 0.00 3.51
9333 11187 3.495100 CCTCAAGTAATTCGGGATGGAGG 60.495 52.174 0.00 0.00 34.11 4.30
9335 11189 2.172717 CAAGTAATTCGGGATGGAGGGT 59.827 50.000 0.00 0.00 0.00 4.34
9377 11445 0.749649 TGTCCAAAAATGCACCGCTT 59.250 45.000 0.00 0.00 0.00 4.68
9379 11447 0.316841 TCCAAAAATGCACCGCTTCC 59.683 50.000 0.00 0.00 0.00 3.46
9406 11474 3.406764 AGAATGTGGTCTCAGCAGTTTC 58.593 45.455 0.00 0.00 0.00 2.78
9441 11514 1.081892 CACGTGCTCCATCTTCCTTG 58.918 55.000 0.82 0.00 0.00 3.61
9481 11554 5.770685 AGCTTCTGAACCTCTATTTTCCT 57.229 39.130 0.00 0.00 0.00 3.36
9522 11595 2.383442 TATAGTGGAGGAGGTCAGCC 57.617 55.000 0.00 0.00 0.00 4.85
9543 11616 1.010797 CGTATACTACACGGCGCGT 60.011 57.895 6.90 6.21 42.36 6.01
9547 11620 0.101759 ATACTACACGGCGCGTCATT 59.898 50.000 12.89 0.00 38.32 2.57
9568 11641 0.473755 TTGACCATGTGCACCACTCT 59.526 50.000 15.69 0.00 35.11 3.24
9569 11642 0.473755 TGACCATGTGCACCACTCTT 59.526 50.000 15.69 0.00 35.11 2.85
9570 11643 1.133823 TGACCATGTGCACCACTCTTT 60.134 47.619 15.69 0.00 35.11 2.52
9571 11644 1.956477 GACCATGTGCACCACTCTTTT 59.044 47.619 15.69 0.00 35.11 2.27
9595 11668 2.600792 GCAAACTTTCTGTGCTGTCTCG 60.601 50.000 0.00 0.00 35.36 4.04
9597 11670 0.390860 ACTTTCTGTGCTGTCTCGCT 59.609 50.000 0.00 0.00 0.00 4.93
9598 11671 0.788995 CTTTCTGTGCTGTCTCGCTG 59.211 55.000 0.00 0.00 0.00 5.18
9728 11819 1.817357 TTCTGCAGCTGGATGTTGAG 58.183 50.000 17.12 0.00 0.00 3.02
9736 11827 1.654954 CTGGATGTTGAGCAGCAGGC 61.655 60.000 0.00 0.00 45.30 4.85
9768 11859 1.135721 ACGTGTAGGCGAGGGAATTAC 59.864 52.381 0.00 0.00 35.59 1.89
9783 11874 6.180472 AGGGAATTACTTGTGATACCAGTTG 58.820 40.000 0.00 0.00 0.00 3.16
9800 11891 3.248602 CAGTTGCAGACTTGTACTTGTCC 59.751 47.826 12.78 3.13 36.10 4.02
9836 11927 6.127366 ACTGTTTCATTGGTTGATTTCAGTGT 60.127 34.615 0.00 0.00 37.90 3.55
9892 11983 0.179006 GCCCATGCTAGAAAGGGAGG 60.179 60.000 15.83 0.00 44.30 4.30
9902 11993 4.345257 GCTAGAAAGGGAGGTGTGATGATA 59.655 45.833 0.00 0.00 0.00 2.15
9934 12025 1.210155 CCGGTAACAGCAAGCAAGC 59.790 57.895 0.00 0.00 0.00 4.01
9935 12026 1.514678 CCGGTAACAGCAAGCAAGCA 61.515 55.000 0.00 0.00 36.85 3.91
9936 12027 0.310543 CGGTAACAGCAAGCAAGCAA 59.689 50.000 3.19 0.00 36.85 3.91
9937 12028 1.664016 CGGTAACAGCAAGCAAGCAAG 60.664 52.381 3.19 0.00 36.85 4.01
9938 12029 1.608590 GGTAACAGCAAGCAAGCAAGA 59.391 47.619 3.19 0.00 36.85 3.02
9939 12030 2.351157 GGTAACAGCAAGCAAGCAAGAG 60.351 50.000 3.19 0.00 36.85 2.85
9940 12031 1.683943 AACAGCAAGCAAGCAAGAGA 58.316 45.000 3.19 0.00 36.85 3.10
9941 12032 1.906990 ACAGCAAGCAAGCAAGAGAT 58.093 45.000 3.19 0.00 36.85 2.75
9942 12033 1.811359 ACAGCAAGCAAGCAAGAGATC 59.189 47.619 3.19 0.00 36.85 2.75
9943 12034 1.810755 CAGCAAGCAAGCAAGAGATCA 59.189 47.619 0.00 0.00 36.85 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 5.902981 CGTTTGTTGCAAGATTTCCAATTTG 59.097 36.000 0.00 0.00 0.00 2.32
25 26 1.792367 GGCGTTTGTTGCAAGATTTCC 59.208 47.619 0.00 0.00 0.00 3.13
31 32 0.598158 ATGCTGGCGTTTGTTGCAAG 60.598 50.000 0.00 0.00 37.20 4.01
42 43 0.309922 CCTGCTTGAATATGCTGGCG 59.690 55.000 0.00 0.00 38.56 5.69
43 44 1.683943 TCCTGCTTGAATATGCTGGC 58.316 50.000 0.00 0.00 42.28 4.85
68 69 5.269554 TCCAATGTTCAAGGTAGGGATTT 57.730 39.130 0.00 0.00 0.00 2.17
69 70 4.946160 TCCAATGTTCAAGGTAGGGATT 57.054 40.909 0.00 0.00 0.00 3.01
70 71 4.946160 TTCCAATGTTCAAGGTAGGGAT 57.054 40.909 0.00 0.00 0.00 3.85
71 72 4.733077 TTTCCAATGTTCAAGGTAGGGA 57.267 40.909 0.00 0.00 0.00 4.20
110 111 7.457852 TGCTCCCACATAAATGGAGTATACTAT 59.542 37.037 5.09 0.00 46.05 2.12
111 112 6.785466 TGCTCCCACATAAATGGAGTATACTA 59.215 38.462 5.09 0.00 46.05 1.82
112 113 5.606749 TGCTCCCACATAAATGGAGTATACT 59.393 40.000 4.68 4.68 46.05 2.12
113 114 5.865085 TGCTCCCACATAAATGGAGTATAC 58.135 41.667 6.64 0.00 46.05 1.47
139 140 1.626686 AACATTCATGTCGGCCCAAA 58.373 45.000 0.00 0.00 40.80 3.28
142 143 0.663153 GCTAACATTCATGTCGGCCC 59.337 55.000 0.00 0.00 40.80 5.80
162 163 6.494842 TGATTGAAGGTCAGAAAAACGAAAG 58.505 36.000 0.00 0.00 0.00 2.62
172 173 4.984295 TGATTGGTTGATTGAAGGTCAGA 58.016 39.130 0.00 0.00 0.00 3.27
188 189 9.784680 TTTTGTTTGTTTGATTTGATTGATTGG 57.215 25.926 0.00 0.00 0.00 3.16
216 217 5.888412 TCTTTGCGCTGATTTTTCTTTTC 57.112 34.783 9.73 0.00 0.00 2.29
217 218 6.534793 TCTTTCTTTGCGCTGATTTTTCTTTT 59.465 30.769 9.73 0.00 0.00 2.27
218 219 6.042143 TCTTTCTTTGCGCTGATTTTTCTTT 58.958 32.000 9.73 0.00 0.00 2.52
219 220 5.591099 TCTTTCTTTGCGCTGATTTTTCTT 58.409 33.333 9.73 0.00 0.00 2.52
220 221 5.186996 TCTTTCTTTGCGCTGATTTTTCT 57.813 34.783 9.73 0.00 0.00 2.52
221 222 5.888412 TTCTTTCTTTGCGCTGATTTTTC 57.112 34.783 9.73 0.00 0.00 2.29
222 223 5.234972 CCTTTCTTTCTTTGCGCTGATTTTT 59.765 36.000 9.73 0.00 0.00 1.94
233 235 7.867909 GGTTTTAGGTGATCCTTTCTTTCTTTG 59.132 37.037 0.00 0.00 42.12 2.77
245 247 2.092375 CCTCCCTGGTTTTAGGTGATCC 60.092 54.545 0.00 0.00 36.02 3.36
263 265 8.872845 CATTTTAATGGATTTTAGTGTTGCCTC 58.127 33.333 0.00 0.00 32.78 4.70
288 290 1.304381 GGTTGATTCAGGCTGGCCA 60.304 57.895 15.73 4.71 38.92 5.36
296 298 2.154462 GTGTGGGAGTGGTTGATTCAG 58.846 52.381 0.00 0.00 0.00 3.02
501 522 1.839894 GAAAGGAGGCGGATGGGAT 59.160 57.895 0.00 0.00 0.00 3.85
502 523 2.731571 CGAAAGGAGGCGGATGGGA 61.732 63.158 0.00 0.00 0.00 4.37
620 641 4.219846 TCGCTCGCTCGCTCGTAC 62.220 66.667 0.00 0.00 0.00 3.67
621 642 3.926413 CTCGCTCGCTCGCTCGTA 61.926 66.667 0.00 0.00 0.00 3.43
699 728 3.934391 GAGGCGACTGTCAACCCCG 62.934 68.421 0.00 0.00 44.43 5.73
702 731 2.047179 GGGAGGCGACTGTCAACC 60.047 66.667 0.00 8.56 44.43 3.77
706 735 4.500116 GCGAGGGAGGCGACTGTC 62.500 72.222 0.00 0.00 44.43 3.51
923 952 3.031417 TTTGGGGCCTAGCTCGCTC 62.031 63.158 0.84 1.48 0.00 5.03
927 956 0.986550 TAGGGTTTGGGGCCTAGCTC 60.987 60.000 0.84 0.00 0.00 4.09
1182 1373 4.367023 GTCTGGTGCACGGGCGTA 62.367 66.667 11.45 0.00 45.35 4.42
1296 1487 1.587043 GGAAGGGGCGCTTGAAGAAC 61.587 60.000 22.39 5.73 0.00 3.01
1356 1547 2.764128 CCTCCGCCCAGCCTCTTA 60.764 66.667 0.00 0.00 0.00 2.10
1656 1847 9.657419 ATTTTAAAATCCCATAGTTGAAGCTTG 57.343 29.630 2.10 0.00 0.00 4.01
1712 1905 2.278142 GCGAAATGCATGGCGGTC 60.278 61.111 19.12 4.61 45.45 4.79
1796 1989 0.966179 ATCACCACAGTGCTCGTGTA 59.034 50.000 7.93 0.00 44.16 2.90
1835 2028 9.436957 GTGACAAATCTAAGAGTGATCCTAAAA 57.563 33.333 0.00 0.00 0.00 1.52
1878 2071 8.634444 CAATTACGTAAATTTCCCATATTCCCA 58.366 33.333 12.81 0.00 35.54 4.37
1901 2094 6.006275 AGCCTATAACCACATCAAGACAAT 57.994 37.500 0.00 0.00 0.00 2.71
2061 2264 2.840651 CCTACATGGGAAGAACACTCCT 59.159 50.000 0.00 0.00 0.00 3.69
2062 2265 2.838202 TCCTACATGGGAAGAACACTCC 59.162 50.000 0.00 0.00 36.20 3.85
2234 2447 6.548622 ACCAAGAACACTGTACTAGTCTAACA 59.451 38.462 0.00 0.00 37.60 2.41
2295 2508 5.643777 AGGACATGTACTGCTGATTTGTTAC 59.356 40.000 10.64 0.00 0.00 2.50
2375 2589 3.314693 TCTAACACTGGGTCTGTCCTTT 58.685 45.455 0.00 0.00 36.25 3.11
2433 2648 2.966732 CGGGGTAAGGCTTGCCTCA 61.967 63.158 30.00 0.00 35.33 3.86
2548 2763 9.956720 CCTCAAAATCTACAGGCATTAATTAAG 57.043 33.333 3.94 0.00 0.00 1.85
2918 3133 4.063998 TCAATCCAGGATTCAGATCACG 57.936 45.455 12.23 0.00 33.77 4.35
3043 3258 5.003160 CACAACAGTACATTCTGATCCCAA 58.997 41.667 0.00 0.00 38.63 4.12
3097 3312 4.581824 ACATGAATGCATCGCCTAAATCTT 59.418 37.500 0.00 0.00 30.68 2.40
3381 3596 5.299279 CGCCTTTGGAAACTGATATGGTTAT 59.701 40.000 0.00 0.00 0.00 1.89
3410 3625 3.686241 ACAAATGATGTCCTGTGATGTCG 59.314 43.478 0.00 0.00 37.96 4.35
3545 3760 7.521748 GCATGGATCAAATGTTAGAGATGGAAG 60.522 40.741 8.83 0.00 0.00 3.46
3871 4086 3.589288 AGGAGCTGACCCAGAAATACTTT 59.411 43.478 0.00 0.00 32.44 2.66
4235 4465 9.816354 AAAAGATGCCGTAAATAATGCTTATTT 57.184 25.926 14.27 14.27 45.19 1.40
4277 4507 8.712228 AGGGAAACAAGATGAGAAAAATACTT 57.288 30.769 0.00 0.00 0.00 2.24
4357 4590 9.859427 TTGCAGTGGATGAAGAAATTATAAAAG 57.141 29.630 0.00 0.00 0.00 2.27
4362 4595 7.472334 AGTTTGCAGTGGATGAAGAAATTAT 57.528 32.000 0.00 0.00 0.00 1.28
4363 4596 6.899393 AGTTTGCAGTGGATGAAGAAATTA 57.101 33.333 0.00 0.00 0.00 1.40
4618 4876 5.352569 CGGAAGAAAGAACAATAGAGTGCAT 59.647 40.000 0.00 0.00 0.00 3.96
4663 4921 6.773976 TTATTTTACAGGATTTGGAGGCTG 57.226 37.500 0.00 0.00 0.00 4.85
5026 5315 4.346129 GGATGTCGAATCATTCAAGCAAC 58.654 43.478 0.00 0.00 0.00 4.17
5086 5376 6.358974 TCAGAAACACCAGATCATAGTTCA 57.641 37.500 0.00 0.00 0.00 3.18
5131 5852 4.156008 ACAAGTTGACTGTCAAGTTCCAAC 59.844 41.667 30.78 16.63 44.23 3.77
5266 5996 8.908678 GTTTTAATCGAAACATTTTACCAGGAC 58.091 33.333 0.00 0.00 38.92 3.85
5271 6001 8.806177 ACCAGTTTTAATCGAAACATTTTACC 57.194 30.769 0.00 0.00 40.98 2.85
5328 6058 6.570672 CATTTATGCTCACATTAGCTGGAT 57.429 37.500 0.00 0.00 43.19 3.41
5424 6154 1.086696 CAATGTGGCGAGTGGGTAAG 58.913 55.000 0.00 0.00 0.00 2.34
5427 6157 0.321298 GTACAATGTGGCGAGTGGGT 60.321 55.000 0.00 0.00 0.00 4.51
5516 6256 6.469782 TCCTTCAAAAGACTTCTGCAATTT 57.530 33.333 0.00 0.00 0.00 1.82
5551 6291 8.554490 AAGCTAAAGAGACCATCCTCTAATAA 57.446 34.615 0.00 0.00 42.31 1.40
5552 6292 9.080097 GTAAGCTAAAGAGACCATCCTCTAATA 57.920 37.037 0.00 0.00 42.31 0.98
5553 6293 7.565398 TGTAAGCTAAAGAGACCATCCTCTAAT 59.435 37.037 0.00 0.00 42.31 1.73
5723 7043 3.845178 TGTTCGTTTCTATCGCAGTCAT 58.155 40.909 0.00 0.00 0.00 3.06
5798 7118 0.031857 CAATGCAAACCAGTTCCGCA 59.968 50.000 9.26 9.26 36.03 5.69
5929 7257 5.585500 TTTTCTTGACACGATCGTTAAGG 57.415 39.130 20.14 10.04 34.26 2.69
5932 7260 4.992319 ACCATTTTCTTGACACGATCGTTA 59.008 37.500 20.14 5.20 0.00 3.18
6034 7365 6.952935 TGCAAAAGTCACACGTAAAAATTT 57.047 29.167 0.00 0.00 0.00 1.82
6036 7367 5.461737 CCATGCAAAAGTCACACGTAAAAAT 59.538 36.000 0.00 0.00 0.00 1.82
6047 7378 4.734398 ACTCAAAACCATGCAAAAGTCA 57.266 36.364 0.00 0.00 0.00 3.41
6105 7437 3.647590 TCATATGCAGATTGGAGGTAGCA 59.352 43.478 0.00 0.00 36.34 3.49
6187 7526 4.541705 TCAAAACATGAAAGAGGTTCCCA 58.458 39.130 0.00 0.00 34.30 4.37
6981 8451 1.477553 CCACCCATGCACATTTAGCT 58.522 50.000 0.00 0.00 0.00 3.32
7030 8500 3.070302 TGGCACACTGACACACATAAGTA 59.930 43.478 0.00 0.00 24.43 2.24
7085 8555 4.953940 TGGATTGGCAAAAAGCTTAGTT 57.046 36.364 3.01 0.00 44.79 2.24
7121 8591 9.135189 AGCATGCAATCCTAAATAGTAAAATGA 57.865 29.630 21.98 0.00 0.00 2.57
7124 8594 8.748412 ACAAGCATGCAATCCTAAATAGTAAAA 58.252 29.630 21.98 0.00 0.00 1.52
7153 8623 7.645058 AAGTATCATTCAAAACACCCCATAG 57.355 36.000 0.00 0.00 0.00 2.23
7187 8657 7.121168 TGGAAGAAAATGTCTAAGCAATACCAG 59.879 37.037 0.00 0.00 34.56 4.00
7214 8684 7.931948 CGTATAAAAGAGTTACATGGGGAAGAT 59.068 37.037 0.00 0.00 0.00 2.40
7332 8802 2.355010 AGCCTTGGATAATGCCTGAC 57.645 50.000 0.00 0.00 0.00 3.51
7477 8953 9.645059 TTTCAAATGTGTAAATGTCTGACAAAA 57.355 25.926 15.31 3.23 0.00 2.44
7478 8954 9.814899 ATTTCAAATGTGTAAATGTCTGACAAA 57.185 25.926 15.31 0.67 0.00 2.83
7511 8989 4.458989 ACAGTGATGGTAAACGATTGCAAT 59.541 37.500 12.83 12.83 0.00 3.56
7728 9319 7.281999 TGTCATTTCATCAGACGCCAATATAAA 59.718 33.333 0.00 0.00 35.09 1.40
7813 9410 1.217882 CCGCGTTAAAGCCTGGATAG 58.782 55.000 4.92 0.00 0.00 2.08
8052 9654 8.982685 GCGGTATAAACTAAATTAACCCTCTAC 58.017 37.037 0.00 0.00 0.00 2.59
8067 9669 9.730420 GTAATGAATTCAAATGCGGTATAAACT 57.270 29.630 13.09 0.00 0.00 2.66
8072 9674 6.959639 AGGTAATGAATTCAAATGCGGTAT 57.040 33.333 13.09 0.00 0.00 2.73
8140 9742 9.787435 TCAAACTCCAAAATACAGTACATAACT 57.213 29.630 0.00 0.00 39.81 2.24
8141 9743 9.821662 GTCAAACTCCAAAATACAGTACATAAC 57.178 33.333 0.00 0.00 0.00 1.89
8144 9746 7.308589 GCTGTCAAACTCCAAAATACAGTACAT 60.309 37.037 0.00 0.00 36.20 2.29
8193 9931 5.473504 ACCATTAATTGACACCAACTCAGAC 59.526 40.000 0.00 0.00 34.72 3.51
8198 9937 6.096673 GGAAACCATTAATTGACACCAACT 57.903 37.500 0.00 0.00 34.72 3.16
8522 10298 4.398044 GTGGTTCCAACTGAGAGAAACAAA 59.602 41.667 4.49 0.00 38.84 2.83
8607 10385 2.503061 CATCTGTCCAGGGCCTCG 59.497 66.667 0.95 0.00 0.00 4.63
8710 10488 8.396272 ACTGTTAAAATTACTGTCATTCTGCT 57.604 30.769 0.00 0.00 0.00 4.24
8735 10514 3.695830 AAAGGCCGACTGAGACAAATA 57.304 42.857 0.00 0.00 0.00 1.40
8774 10579 1.697082 GGGGAGGCCAGGTTAGCTAC 61.697 65.000 5.01 0.00 0.00 3.58
9085 10897 1.200252 TGGTGACAACAACCAACAACG 59.800 47.619 0.00 0.00 37.44 4.10
9245 11061 7.224753 CGAAGGAAGTATTAAGCTGAGCATTAA 59.775 37.037 7.39 9.14 0.00 1.40
9270 11086 3.745975 TCTGCAACAAGTAATTCAGGTCG 59.254 43.478 0.00 0.00 0.00 4.79
9312 11166 3.495100 CCCTCCATCCCGAATTACTTGAG 60.495 52.174 0.00 0.00 0.00 3.02
9313 11167 2.438021 CCCTCCATCCCGAATTACTTGA 59.562 50.000 0.00 0.00 0.00 3.02
9330 11184 7.094549 TGCATGTACTTAAAATGTTACACCCTC 60.095 37.037 0.00 0.00 0.00 4.30
9333 11187 8.859156 CATTGCATGTACTTAAAATGTTACACC 58.141 33.333 0.00 0.00 0.00 4.16
9335 11189 9.619316 GACATTGCATGTACTTAAAATGTTACA 57.381 29.630 16.11 0.00 45.03 2.41
9377 11445 1.825474 GAGACCACATTCTTCTCGGGA 59.175 52.381 0.00 0.00 0.00 5.14
9379 11447 2.886081 CTGAGACCACATTCTTCTCGG 58.114 52.381 0.00 0.00 38.96 4.63
9406 11474 1.216710 GTGAGAGAACGGGCCTGAG 59.783 63.158 21.41 5.09 0.00 3.35
9441 11514 4.783621 TCTGGATGGTGCAGCGGC 62.784 66.667 11.91 0.31 35.65 6.53
9481 11554 2.159212 TCGACACAACGGAACTTCAGAA 60.159 45.455 0.00 0.00 0.00 3.02
9543 11616 3.443329 GTGGTGCACATGGTCAATAATGA 59.557 43.478 20.43 0.00 34.08 2.57
9547 11620 2.305635 AGAGTGGTGCACATGGTCAATA 59.694 45.455 20.43 0.00 36.74 1.90
9568 11641 4.175516 CAGCACAGAAAGTTTGCAGAAAA 58.824 39.130 0.00 0.00 38.81 2.29
9569 11642 3.193267 ACAGCACAGAAAGTTTGCAGAAA 59.807 39.130 0.00 0.00 38.81 2.52
9570 11643 2.754552 ACAGCACAGAAAGTTTGCAGAA 59.245 40.909 0.00 0.00 38.81 3.02
9571 11644 2.355756 GACAGCACAGAAAGTTTGCAGA 59.644 45.455 0.00 0.00 38.81 4.26
9597 11670 3.864965 TCTCCACTCAGGGGAACTGCA 62.865 57.143 0.00 0.00 46.57 4.41
9598 11671 1.194781 TCTCCACTCAGGGGAACTGC 61.195 60.000 0.00 0.00 46.57 4.40
9736 11827 1.686566 CTACACGTGCATGTCGCTGG 61.687 60.000 17.22 0.00 43.06 4.85
9768 11859 3.668447 AGTCTGCAACTGGTATCACAAG 58.332 45.455 1.44 0.00 36.65 3.16
9783 11874 2.224305 ACAGGGACAAGTACAAGTCTGC 60.224 50.000 14.74 2.83 35.18 4.26
9800 11891 5.241506 ACCAATGAAACAGTGTCATTACAGG 59.758 40.000 17.26 16.23 42.47 4.00
9836 11927 1.911357 AGTGCCATCTCCTTGTCATGA 59.089 47.619 0.00 0.00 0.00 3.07
9888 11979 4.503714 TCCCTTTTATCATCACACCTCC 57.496 45.455 0.00 0.00 0.00 4.30
9892 11983 5.399013 CGGTTTTCCCTTTTATCATCACAC 58.601 41.667 0.00 0.00 36.42 3.82
9902 11993 0.178995 TACCGGCGGTTTTCCCTTTT 60.179 50.000 38.73 10.55 37.09 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.