Multiple sequence alignment - TraesCS7D01G380700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G380700 chr7D 100.000 6858 0 0 1 6858 493572751 493565894 0.000000e+00 12665.0
1 TraesCS7D01G380700 chr7D 95.050 101 5 0 267 367 493572385 493572485 7.120000e-35 159.0
2 TraesCS7D01G380700 chr7D 91.781 73 5 1 462 534 493659146 493659075 4.380000e-17 100.0
3 TraesCS7D01G380700 chr7B 93.494 5887 242 52 464 6291 522153841 522148037 0.000000e+00 8619.0
4 TraesCS7D01G380700 chr7B 88.760 258 23 2 6587 6844 522147614 522147363 1.860000e-80 311.0
5 TraesCS7D01G380700 chr7B 93.137 102 6 1 6384 6485 553654378 553654478 1.540000e-31 148.0
6 TraesCS7D01G380700 chr7B 87.387 111 8 1 6484 6588 522147809 522147699 9.340000e-24 122.0
7 TraesCS7D01G380700 chr7B 94.203 69 4 0 462 530 745674500 745674568 9.410000e-19 106.0
8 TraesCS7D01G380700 chr7A 94.922 4982 189 35 1203 6160 559397464 559392523 0.000000e+00 7740.0
9 TraesCS7D01G380700 chr7A 95.285 615 26 3 536 1149 559398491 559397879 0.000000e+00 972.0
10 TraesCS7D01G380700 chr7A 92.784 97 7 0 6389 6485 20698557 20698653 2.580000e-29 141.0
11 TraesCS7D01G380700 chr7A 92.553 94 7 0 6395 6488 641450295 641450202 1.200000e-27 135.0
12 TraesCS7D01G380700 chr7A 92.754 69 5 0 462 530 229032278 229032346 4.380000e-17 100.0
13 TraesCS7D01G380700 chr2A 92.800 625 37 7 2856 3474 515951645 515952267 0.000000e+00 898.0
14 TraesCS7D01G380700 chr2A 89.530 659 62 5 2822 3474 90419665 90420322 0.000000e+00 828.0
15 TraesCS7D01G380700 chr2A 80.408 245 35 12 2 237 436217494 436217254 2.540000e-39 174.0
16 TraesCS7D01G380700 chr2A 92.929 99 7 0 6389 6487 186403679 186403777 1.990000e-30 145.0
17 TraesCS7D01G380700 chr2D 92.480 625 39 6 2856 3474 380416531 380417153 0.000000e+00 887.0
18 TraesCS7D01G380700 chr2D 96.552 87 3 0 6399 6485 640827025 640827111 1.990000e-30 145.0
19 TraesCS7D01G380700 chr2D 95.588 68 3 0 463 530 326271279 326271212 7.270000e-20 110.0
20 TraesCS7D01G380700 chr2D 94.203 69 4 0 462 530 156559169 156559237 9.410000e-19 106.0
21 TraesCS7D01G380700 chr2D 100.000 34 0 0 373 406 584896484 584896517 5.740000e-06 63.9
22 TraesCS7D01G380700 chr2D 97.143 35 1 0 644 678 478110347 478110381 7.430000e-05 60.2
23 TraesCS7D01G380700 chr5B 91.801 622 44 5 2859 3474 455170856 455170236 0.000000e+00 859.0
24 TraesCS7D01G380700 chr5B 89.713 661 58 7 2821 3474 217612896 217612239 0.000000e+00 835.0
25 TraesCS7D01G380700 chr5B 95.714 70 3 0 462 531 670572058 670571989 5.620000e-21 113.0
26 TraesCS7D01G380700 chr1B 90.000 650 59 4 2832 3475 116128747 116129396 0.000000e+00 835.0
27 TraesCS7D01G380700 chr1B 85.470 234 27 6 6 237 656986335 656986563 3.200000e-58 237.0
28 TraesCS7D01G380700 chr1B 83.268 257 24 12 6 247 25824408 25824660 1.160000e-52 219.0
29 TraesCS7D01G380700 chr5A 89.530 659 62 6 2822 3474 483276609 483275952 0.000000e+00 828.0
30 TraesCS7D01G380700 chr5A 94.444 72 4 0 245 316 697740586 697740515 2.020000e-20 111.0
31 TraesCS7D01G380700 chr5A 92.000 75 4 2 396 468 697740503 697740577 3.380000e-18 104.0
32 TraesCS7D01G380700 chr1D 85.652 230 23 8 1 226 27547176 27546953 4.140000e-57 233.0
33 TraesCS7D01G380700 chr1D 81.116 233 29 12 6 227 220876303 220876075 9.140000e-39 172.0
34 TraesCS7D01G380700 chr1D 90.526 95 7 2 6395 6488 28159220 28159127 2.600000e-24 124.0
35 TraesCS7D01G380700 chr1D 89.691 97 10 0 6389 6485 189649142 189649238 2.600000e-24 124.0
36 TraesCS7D01G380700 chr1D 95.890 73 2 1 406 477 245982673 245982601 4.350000e-22 117.0
37 TraesCS7D01G380700 chr1D 92.857 70 3 1 463 530 493499992 493500061 4.380000e-17 100.0
38 TraesCS7D01G380700 chr1D 96.296 54 2 0 256 309 360363491 360363544 9.470000e-14 89.8
39 TraesCS7D01G380700 chr1D 81.081 111 17 4 254 362 447516692 447516584 1.230000e-12 86.1
40 TraesCS7D01G380700 chr1D 89.062 64 7 0 304 367 360363565 360363502 5.700000e-11 80.5
41 TraesCS7D01G380700 chr1D 93.023 43 2 1 365 406 369899356 369899314 2.070000e-05 62.1
42 TraesCS7D01G380700 chr4D 84.100 239 27 8 6 239 13099953 13100185 3.220000e-53 220.0
43 TraesCS7D01G380700 chr4D 81.928 249 32 11 1 239 400895589 400895344 1.510000e-46 198.0
44 TraesCS7D01G380700 chr4D 93.137 102 6 1 6386 6486 109074975 109074874 1.540000e-31 148.0
45 TraesCS7D01G380700 chr4D 89.691 97 10 0 6389 6485 59066367 59066463 2.600000e-24 124.0
46 TraesCS7D01G380700 chr4D 87.255 102 13 0 6382 6483 15859558 15859659 4.350000e-22 117.0
47 TraesCS7D01G380700 chr4D 87.755 98 10 2 6389 6485 379506582 379506678 5.620000e-21 113.0
48 TraesCS7D01G380700 chr4D 95.588 68 3 0 407 474 62309558 62309491 7.270000e-20 110.0
49 TraesCS7D01G380700 chr4D 89.535 86 6 3 6401 6485 125233235 125233152 9.410000e-19 106.0
50 TraesCS7D01G380700 chr4D 84.615 104 12 4 6389 6490 340289266 340289367 4.380000e-17 100.0
51 TraesCS7D01G380700 chr4D 97.222 36 1 0 371 406 26251339 26251304 2.070000e-05 62.1
52 TraesCS7D01G380700 chr4D 97.222 36 1 0 371 406 333770236 333770271 2.070000e-05 62.1
53 TraesCS7D01G380700 chr4D 92.683 41 2 1 362 401 451274371 451274331 2.670000e-04 58.4
54 TraesCS7D01G380700 chr6D 83.843 229 27 10 6 227 446440634 446440859 6.970000e-50 209.0
55 TraesCS7D01G380700 chr6D 90.722 97 9 0 6389 6485 428262041 428262137 5.580000e-26 130.0
56 TraesCS7D01G380700 chr6D 85.455 110 11 2 255 362 58433757 58433863 7.270000e-20 110.0
57 TraesCS7D01G380700 chr6D 90.476 84 7 1 6401 6483 470645581 470645498 7.270000e-20 110.0
58 TraesCS7D01G380700 chr6D 91.892 74 6 0 6395 6468 372879525 372879452 3.380000e-18 104.0
59 TraesCS7D01G380700 chr6D 86.813 91 12 0 6395 6485 100571039 100570949 1.220000e-17 102.0
60 TraesCS7D01G380700 chr6D 91.429 70 5 1 461 530 157650711 157650643 2.040000e-15 95.3
61 TraesCS7D01G380700 chr6D 90.769 65 3 2 467 531 454652693 454652754 4.410000e-12 84.2
62 TraesCS7D01G380700 chr6D 81.905 105 14 5 6387 6489 457543834 457543733 4.410000e-12 84.2
63 TraesCS7D01G380700 chr6D 95.745 47 2 0 484 530 37443987 37443941 7.380000e-10 76.8
64 TraesCS7D01G380700 chr6D 97.222 36 1 0 371 406 53672088 53672123 2.070000e-05 62.1
65 TraesCS7D01G380700 chr6D 97.222 36 1 0 371 406 397636676 397636711 2.070000e-05 62.1
66 TraesCS7D01G380700 chr6D 97.222 36 1 0 371 406 437180601 437180566 2.070000e-05 62.1
67 TraesCS7D01G380700 chr6D 97.222 36 1 0 371 406 467187210 467187245 2.070000e-05 62.1
68 TraesCS7D01G380700 chr3D 81.526 249 26 13 6 237 539708178 539707933 3.270000e-43 187.0
69 TraesCS7D01G380700 chr3D 92.784 97 7 0 6389 6485 22331253 22331349 2.580000e-29 141.0
70 TraesCS7D01G380700 chr3D 92.784 97 7 0 6389 6485 382104831 382104927 2.580000e-29 141.0
71 TraesCS7D01G380700 chr3D 95.455 66 2 1 407 472 560920375 560920439 3.380000e-18 104.0
72 TraesCS7D01G380700 chr6A 95.506 89 4 0 6399 6487 474450478 474450390 7.170000e-30 143.0
73 TraesCS7D01G380700 chr6A 95.506 89 2 2 6399 6486 35178056 35178143 2.580000e-29 141.0
74 TraesCS7D01G380700 chr6A 92.708 96 7 0 6395 6490 484491 484396 9.270000e-29 139.0
75 TraesCS7D01G380700 chr6A 93.182 44 1 2 365 406 66301480 66301523 5.740000e-06 63.9
76 TraesCS7D01G380700 chr6B 92.784 97 7 0 6389 6485 402692922 402693018 2.580000e-29 141.0
77 TraesCS7D01G380700 chr5D 92.784 97 7 0 6389 6485 1692952 1693048 2.580000e-29 141.0
78 TraesCS7D01G380700 chr5D 91.304 92 8 0 6395 6486 540237950 540237859 7.220000e-25 126.0
79 TraesCS7D01G380700 chr5D 89.000 100 11 0 6386 6485 338652426 338652525 2.600000e-24 124.0
80 TraesCS7D01G380700 chr5D 89.691 97 10 0 6389 6485 398867625 398867721 2.600000e-24 124.0
81 TraesCS7D01G380700 chr5D 86.325 117 11 5 6371 6485 329647060 329647173 9.340000e-24 122.0
82 TraesCS7D01G380700 chr5D 92.754 69 5 0 462 530 287682476 287682544 4.380000e-17 100.0
83 TraesCS7D01G380700 chr5D 88.571 70 5 3 464 530 544624658 544624589 1.590000e-11 82.4
84 TraesCS7D01G380700 chr5D 86.765 68 9 0 464 531 166627436 166627503 7.380000e-10 76.8
85 TraesCS7D01G380700 chr5D 91.304 46 3 1 361 406 40191275 40191319 2.070000e-05 62.1
86 TraesCS7D01G380700 chr5D 97.222 36 1 0 371 406 269020576 269020541 2.070000e-05 62.1
87 TraesCS7D01G380700 chr1A 92.784 97 7 0 6389 6485 561333698 561333794 2.580000e-29 141.0
88 TraesCS7D01G380700 chr1A 91.753 97 8 0 6389 6485 577759795 577759891 1.200000e-27 135.0
89 TraesCS7D01G380700 chr1A 94.286 70 4 0 407 476 542440337 542440406 2.620000e-19 108.0
90 TraesCS7D01G380700 chr1A 92.000 75 6 0 242 316 544388696 544388770 9.410000e-19 106.0
91 TraesCS7D01G380700 chr1A 100.000 34 0 0 373 406 513209458 513209491 5.740000e-06 63.9
92 TraesCS7D01G380700 chr4B 91.000 100 9 0 6387 6486 246455316 246455415 1.200000e-27 135.0
93 TraesCS7D01G380700 chr4B 94.203 69 4 0 462 530 559543337 559543269 9.410000e-19 106.0
94 TraesCS7D01G380700 chr4B 92.754 69 5 0 462 530 311115717 311115785 4.380000e-17 100.0
95 TraesCS7D01G380700 chr4B 87.838 74 6 3 316 388 652887502 652887573 4.410000e-12 84.2
96 TraesCS7D01G380700 chr4A 92.553 94 7 0 6395 6488 448406579 448406486 1.200000e-27 135.0
97 TraesCS7D01G380700 chr4A 92.754 69 5 0 462 530 20232154 20232222 4.380000e-17 100.0
98 TraesCS7D01G380700 chr4A 92.647 68 5 0 462 529 526627991 526627924 1.570000e-16 99.0
99 TraesCS7D01G380700 chr4A 92.647 68 4 1 255 322 15761588 15761522 5.660000e-16 97.1
100 TraesCS7D01G380700 chr3B 84.746 118 16 2 255 371 741301342 741301458 4.350000e-22 117.0
101 TraesCS7D01G380700 chr3B 84.348 115 17 1 254 367 741301468 741301354 2.020000e-20 111.0
102 TraesCS7D01G380700 chr3B 85.000 100 9 4 373 471 252934569 252934663 5.660000e-16 97.1
103 TraesCS7D01G380700 chr3B 81.579 114 17 3 258 367 252934655 252934542 2.630000e-14 91.6
104 TraesCS7D01G380700 chr3B 80.342 117 19 1 255 367 252934530 252934646 1.230000e-12 86.1
105 TraesCS7D01G380700 chr3A 95.775 71 2 1 246 316 235839443 235839512 5.620000e-21 113.0
106 TraesCS7D01G380700 chr3A 90.909 77 5 2 396 470 83731753 83731829 1.220000e-17 102.0
107 TraesCS7D01G380700 chr3A 83.838 99 12 3 371 468 75151727 75151822 2.630000e-14 91.6
108 TraesCS7D01G380700 chr2B 95.522 67 3 0 407 473 779865662 779865596 2.620000e-19 108.0
109 TraesCS7D01G380700 chr2B 90.244 82 5 2 235 316 483512871 483512949 3.380000e-18 104.0
110 TraesCS7D01G380700 chrUn 90.123 81 7 1 6405 6485 12939497 12939418 3.380000e-18 104.0
111 TraesCS7D01G380700 chrUn 92.857 70 4 1 6417 6485 214477753 214477684 4.380000e-17 100.0
112 TraesCS7D01G380700 chrUn 84.314 102 13 3 543 644 17478120 17478022 5.660000e-16 97.1
113 TraesCS7D01G380700 chrUn 91.304 69 6 0 462 530 199468881 199468949 2.040000e-15 95.3
114 TraesCS7D01G380700 chrUn 85.542 83 10 2 6404 6485 89753673 89753592 1.230000e-12 86.1
115 TraesCS7D01G380700 chrUn 81.553 103 15 4 6388 6488 2713896 2713996 1.590000e-11 82.4
116 TraesCS7D01G380700 chrUn 81.553 103 15 4 6388 6488 2717498 2717598 1.590000e-11 82.4
117 TraesCS7D01G380700 chrUn 81.553 103 15 4 6388 6488 2780376 2780476 1.590000e-11 82.4
118 TraesCS7D01G380700 chrUn 93.103 58 1 3 6429 6485 339555089 339555144 1.590000e-11 82.4
119 TraesCS7D01G380700 chrUn 86.486 74 6 4 6415 6486 21636744 21636673 2.050000e-10 78.7
120 TraesCS7D01G380700 chrUn 90.164 61 4 2 6429 6488 84102670 84102611 2.050000e-10 78.7
121 TraesCS7D01G380700 chrUn 95.349 43 2 0 6403 6445 225866367 225866325 1.230000e-07 69.4
122 TraesCS7D01G380700 chrUn 93.478 46 3 0 6400 6445 437758013 437758058 1.230000e-07 69.4
123 TraesCS7D01G380700 chrUn 100.000 33 0 0 369 401 76985763 76985795 2.070000e-05 62.1
124 TraesCS7D01G380700 chrUn 100.000 33 0 0 369 401 76996748 76996780 2.070000e-05 62.1
125 TraesCS7D01G380700 chrUn 100.000 33 0 0 369 401 77015883 77015915 2.070000e-05 62.1
126 TraesCS7D01G380700 chrUn 100.000 33 0 0 369 401 341413858 341413890 2.070000e-05 62.1
127 TraesCS7D01G380700 chrUn 100.000 33 0 0 369 401 399860359 399860327 2.070000e-05 62.1
128 TraesCS7D01G380700 chrUn 97.222 36 0 1 371 406 94865294 94865328 7.430000e-05 60.2
129 TraesCS7D01G380700 chrUn 97.059 34 1 0 373 406 96401023 96400990 2.670000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G380700 chr7D 493565894 493572751 6857 True 12665.000000 12665 100.000000 1 6858 1 chr7D.!!$R1 6857
1 TraesCS7D01G380700 chr7B 522147363 522153841 6478 True 3017.333333 8619 89.880333 464 6844 3 chr7B.!!$R1 6380
2 TraesCS7D01G380700 chr7A 559392523 559398491 5968 True 4356.000000 7740 95.103500 536 6160 2 chr7A.!!$R2 5624
3 TraesCS7D01G380700 chr2A 515951645 515952267 622 False 898.000000 898 92.800000 2856 3474 1 chr2A.!!$F3 618
4 TraesCS7D01G380700 chr2A 90419665 90420322 657 False 828.000000 828 89.530000 2822 3474 1 chr2A.!!$F1 652
5 TraesCS7D01G380700 chr2D 380416531 380417153 622 False 887.000000 887 92.480000 2856 3474 1 chr2D.!!$F2 618
6 TraesCS7D01G380700 chr5B 455170236 455170856 620 True 859.000000 859 91.801000 2859 3474 1 chr5B.!!$R2 615
7 TraesCS7D01G380700 chr5B 217612239 217612896 657 True 835.000000 835 89.713000 2821 3474 1 chr5B.!!$R1 653
8 TraesCS7D01G380700 chr1B 116128747 116129396 649 False 835.000000 835 90.000000 2832 3475 1 chr1B.!!$F2 643
9 TraesCS7D01G380700 chr5A 483275952 483276609 657 True 828.000000 828 89.530000 2822 3474 1 chr5A.!!$R1 652

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 220 0.034756 TGCTTGAGCCACGTGTACAT 59.965 50.000 15.65 0.00 41.18 2.29 F
907 910 0.100682 CGGCGAGAAGAAGGAATCGA 59.899 55.000 0.00 0.00 37.35 3.59 F
1200 1564 0.250553 CAACCCTAGCGAACCAACCA 60.251 55.000 0.00 0.00 0.00 3.67 F
1477 1841 0.407528 TGATGGGCAGCCCTTGTTTA 59.592 50.000 31.51 10.51 45.70 2.01 F
3116 3495 0.030705 ATGGAGCTTCTGGAGGCCTA 60.031 55.000 4.42 0.00 33.44 3.93 F
3248 3627 1.285667 TGGCCACACATCCATCTCAAT 59.714 47.619 0.00 0.00 0.00 2.57 F
3373 3753 2.224042 GCCTTTTAGCTTTTGTGGCACT 60.224 45.455 19.83 0.00 38.79 4.40 F
4833 5221 1.682854 CAACCAGCATGTTGACCAGTT 59.317 47.619 11.60 3.74 46.77 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 1841 1.136828 TTGGTGGCTCTGGTAACACT 58.863 50.000 0.00 0.00 46.17 3.55 R
2511 2880 0.098376 GCTGAGAAGAAATGCTGCGG 59.902 55.000 0.00 0.00 0.00 5.69 R
3116 3495 1.102978 GGTTTGGGCATATTCAGCGT 58.897 50.000 0.00 0.00 0.00 5.07 R
3248 3627 0.318699 GTGTAGCGGAGATGCGCATA 60.319 55.000 25.40 2.04 39.19 3.14 R
4422 4808 0.668535 AAGCGAAAGGTGAAACAGCC 59.331 50.000 0.00 0.00 43.76 4.85 R
4806 5194 2.363306 AACATGCTGGTTGAACCTCA 57.637 45.000 16.33 13.34 39.58 3.86 R
5034 5422 3.431725 GTGTTACCCGGCTGCTGC 61.432 66.667 7.10 7.10 38.76 5.25 R
6663 7334 0.110688 CATATTCCGTTCGCATGCCG 60.111 55.000 13.15 10.07 38.61 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.491323 AAGAATCGGGAAAAAGACTCTCT 57.509 39.130 0.00 0.00 0.00 3.10
23 24 6.607004 AAGAATCGGGAAAAAGACTCTCTA 57.393 37.500 0.00 0.00 0.00 2.43
24 25 6.215495 AGAATCGGGAAAAAGACTCTCTAG 57.785 41.667 0.00 0.00 0.00 2.43
25 26 5.128008 AGAATCGGGAAAAAGACTCTCTAGG 59.872 44.000 0.00 0.00 0.00 3.02
26 27 3.097614 TCGGGAAAAAGACTCTCTAGGG 58.902 50.000 0.00 0.00 0.00 3.53
27 28 2.418884 CGGGAAAAAGACTCTCTAGGGC 60.419 54.545 0.00 0.00 0.00 5.19
28 29 2.572104 GGGAAAAAGACTCTCTAGGGCA 59.428 50.000 0.00 0.00 0.00 5.36
29 30 3.369997 GGGAAAAAGACTCTCTAGGGCAG 60.370 52.174 0.00 0.00 0.00 4.85
30 31 3.266636 GAAAAAGACTCTCTAGGGCAGC 58.733 50.000 0.00 0.00 0.00 5.25
31 32 1.199615 AAAGACTCTCTAGGGCAGCC 58.800 55.000 1.26 1.26 0.00 4.85
32 33 1.040339 AAGACTCTCTAGGGCAGCCG 61.040 60.000 5.00 0.00 0.00 5.52
33 34 2.443016 ACTCTCTAGGGCAGCCGG 60.443 66.667 5.00 0.00 0.00 6.13
34 35 2.443016 CTCTCTAGGGCAGCCGGT 60.443 66.667 5.00 0.00 0.00 5.28
35 36 2.442272 TCTCTAGGGCAGCCGGTC 60.442 66.667 5.00 0.00 0.00 4.79
36 37 3.905678 CTCTAGGGCAGCCGGTCG 61.906 72.222 5.00 0.00 0.00 4.79
37 38 4.435970 TCTAGGGCAGCCGGTCGA 62.436 66.667 5.00 0.00 0.00 4.20
38 39 4.208686 CTAGGGCAGCCGGTCGAC 62.209 72.222 7.13 7.13 0.00 4.20
62 63 3.073101 GGCGGACGAACCCTAGGT 61.073 66.667 8.29 0.00 37.65 3.08
63 64 1.754234 GGCGGACGAACCCTAGGTA 60.754 63.158 8.29 0.00 33.12 3.08
64 65 1.435105 GCGGACGAACCCTAGGTAC 59.565 63.158 8.29 0.00 33.12 3.34
65 66 1.723870 CGGACGAACCCTAGGTACG 59.276 63.158 8.29 12.32 33.12 3.67
66 67 1.718757 CGGACGAACCCTAGGTACGG 61.719 65.000 18.63 3.39 33.12 4.02
67 68 0.394352 GGACGAACCCTAGGTACGGA 60.394 60.000 18.63 0.00 33.12 4.69
68 69 0.735471 GACGAACCCTAGGTACGGAC 59.265 60.000 18.63 0.00 33.12 4.79
69 70 1.026718 ACGAACCCTAGGTACGGACG 61.027 60.000 18.63 12.69 33.12 4.79
70 71 0.744414 CGAACCCTAGGTACGGACGA 60.744 60.000 8.29 0.00 33.12 4.20
71 72 0.735471 GAACCCTAGGTACGGACGAC 59.265 60.000 8.29 0.00 33.12 4.34
72 73 1.026718 AACCCTAGGTACGGACGACG 61.027 60.000 8.29 0.00 41.80 5.12
92 93 4.101448 GCCCCCAGCGACAGTCAT 62.101 66.667 0.41 0.00 0.00 3.06
93 94 2.124983 CCCCCAGCGACAGTCATG 60.125 66.667 0.41 0.00 0.00 3.07
94 95 2.124983 CCCCAGCGACAGTCATGG 60.125 66.667 13.00 13.00 0.00 3.66
95 96 2.659063 CCCCAGCGACAGTCATGGA 61.659 63.158 19.32 0.00 34.60 3.41
96 97 1.153489 CCCAGCGACAGTCATGGAG 60.153 63.158 19.32 8.78 34.60 3.86
97 98 1.153489 CCAGCGACAGTCATGGAGG 60.153 63.158 14.32 0.00 34.60 4.30
98 99 1.812922 CAGCGACAGTCATGGAGGC 60.813 63.158 0.41 0.00 0.00 4.70
99 100 2.512515 GCGACAGTCATGGAGGCC 60.513 66.667 0.00 0.00 0.00 5.19
100 101 2.202797 CGACAGTCATGGAGGCCG 60.203 66.667 0.00 0.00 0.00 6.13
101 102 2.710902 CGACAGTCATGGAGGCCGA 61.711 63.158 0.00 0.00 0.00 5.54
102 103 1.153549 GACAGTCATGGAGGCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
103 104 2.187946 CAGTCATGGAGGCCGACC 59.812 66.667 13.83 13.83 0.00 4.79
104 105 3.461773 AGTCATGGAGGCCGACCG 61.462 66.667 15.28 4.56 42.76 4.79
140 141 4.235762 GCGGCGGCTAGGATTGGA 62.236 66.667 9.78 0.00 35.83 3.53
141 142 2.743718 CGGCGGCTAGGATTGGAT 59.256 61.111 7.61 0.00 0.00 3.41
142 143 1.374758 CGGCGGCTAGGATTGGATC 60.375 63.158 7.61 0.00 0.00 3.36
143 144 1.374758 GGCGGCTAGGATTGGATCG 60.375 63.158 0.00 0.00 0.00 3.69
144 145 1.374758 GCGGCTAGGATTGGATCGG 60.375 63.158 0.00 0.00 0.00 4.18
145 146 2.050269 CGGCTAGGATTGGATCGGT 58.950 57.895 0.00 0.00 0.00 4.69
146 147 0.393077 CGGCTAGGATTGGATCGGTT 59.607 55.000 0.00 0.00 0.00 4.44
147 148 1.616865 CGGCTAGGATTGGATCGGTTA 59.383 52.381 0.00 0.00 0.00 2.85
148 149 2.352814 CGGCTAGGATTGGATCGGTTAG 60.353 54.545 0.00 0.00 0.00 2.34
149 150 2.028020 GGCTAGGATTGGATCGGTTAGG 60.028 54.545 0.00 0.00 0.00 2.69
150 151 2.613223 GCTAGGATTGGATCGGTTAGGC 60.613 54.545 0.00 0.00 0.00 3.93
151 152 1.807814 AGGATTGGATCGGTTAGGCT 58.192 50.000 0.00 0.00 0.00 4.58
152 153 1.417890 AGGATTGGATCGGTTAGGCTG 59.582 52.381 0.00 0.00 0.00 4.85
153 154 1.416401 GGATTGGATCGGTTAGGCTGA 59.584 52.381 0.00 0.00 36.82 4.26
154 155 2.039084 GGATTGGATCGGTTAGGCTGAT 59.961 50.000 0.00 0.00 45.41 2.90
155 156 3.260884 GGATTGGATCGGTTAGGCTGATA 59.739 47.826 0.00 0.00 42.93 2.15
156 157 3.746045 TTGGATCGGTTAGGCTGATAC 57.254 47.619 0.00 0.00 42.93 2.24
157 158 1.968493 TGGATCGGTTAGGCTGATACC 59.032 52.381 0.00 0.93 42.08 2.73
158 159 1.968493 GGATCGGTTAGGCTGATACCA 59.032 52.381 13.41 4.07 42.93 3.25
159 160 2.567615 GGATCGGTTAGGCTGATACCAT 59.432 50.000 13.41 7.54 42.93 3.55
160 161 3.589988 GATCGGTTAGGCTGATACCATG 58.410 50.000 13.41 0.00 42.93 3.66
161 162 2.394632 TCGGTTAGGCTGATACCATGT 58.605 47.619 13.41 0.00 32.12 3.21
162 163 2.769663 TCGGTTAGGCTGATACCATGTT 59.230 45.455 13.41 0.00 32.12 2.71
163 164 3.962063 TCGGTTAGGCTGATACCATGTTA 59.038 43.478 13.41 0.00 32.12 2.41
164 165 4.038763 TCGGTTAGGCTGATACCATGTTAG 59.961 45.833 13.41 0.08 32.12 2.34
165 166 4.038763 CGGTTAGGCTGATACCATGTTAGA 59.961 45.833 13.41 0.00 32.12 2.10
166 167 5.452776 CGGTTAGGCTGATACCATGTTAGAA 60.453 44.000 13.41 0.00 32.12 2.10
167 168 5.992217 GGTTAGGCTGATACCATGTTAGAAG 59.008 44.000 0.00 0.00 32.12 2.85
168 169 4.696479 AGGCTGATACCATGTTAGAAGG 57.304 45.455 0.00 0.00 0.00 3.46
169 170 4.298626 AGGCTGATACCATGTTAGAAGGA 58.701 43.478 0.00 0.00 0.00 3.36
170 171 4.910304 AGGCTGATACCATGTTAGAAGGAT 59.090 41.667 0.00 0.00 0.00 3.24
171 172 6.084738 AGGCTGATACCATGTTAGAAGGATA 58.915 40.000 0.00 0.00 0.00 2.59
172 173 6.212388 AGGCTGATACCATGTTAGAAGGATAG 59.788 42.308 0.00 0.00 0.00 2.08
173 174 6.211584 GGCTGATACCATGTTAGAAGGATAGA 59.788 42.308 0.00 0.00 0.00 1.98
174 175 7.093112 GGCTGATACCATGTTAGAAGGATAGAT 60.093 40.741 0.00 0.00 0.00 1.98
175 176 8.972127 GCTGATACCATGTTAGAAGGATAGATA 58.028 37.037 0.00 0.00 0.00 1.98
177 178 9.480861 TGATACCATGTTAGAAGGATAGATAGG 57.519 37.037 0.00 0.00 0.00 2.57
178 179 9.702253 GATACCATGTTAGAAGGATAGATAGGA 57.298 37.037 0.00 0.00 0.00 2.94
180 181 8.980832 ACCATGTTAGAAGGATAGATAGGAAT 57.019 34.615 0.00 0.00 0.00 3.01
181 182 9.398921 ACCATGTTAGAAGGATAGATAGGAATT 57.601 33.333 0.00 0.00 0.00 2.17
182 183 9.664332 CCATGTTAGAAGGATAGATAGGAATTG 57.336 37.037 0.00 0.00 0.00 2.32
183 184 9.664332 CATGTTAGAAGGATAGATAGGAATTGG 57.336 37.037 0.00 0.00 0.00 3.16
184 185 8.798975 TGTTAGAAGGATAGATAGGAATTGGT 57.201 34.615 0.00 0.00 0.00 3.67
185 186 8.651389 TGTTAGAAGGATAGATAGGAATTGGTG 58.349 37.037 0.00 0.00 0.00 4.17
186 187 6.694445 AGAAGGATAGATAGGAATTGGTGG 57.306 41.667 0.00 0.00 0.00 4.61
187 188 6.393897 AGAAGGATAGATAGGAATTGGTGGA 58.606 40.000 0.00 0.00 0.00 4.02
188 189 6.500049 AGAAGGATAGATAGGAATTGGTGGAG 59.500 42.308 0.00 0.00 0.00 3.86
189 190 5.731924 AGGATAGATAGGAATTGGTGGAGT 58.268 41.667 0.00 0.00 0.00 3.85
190 191 6.153924 AGGATAGATAGGAATTGGTGGAGTT 58.846 40.000 0.00 0.00 0.00 3.01
191 192 6.043706 AGGATAGATAGGAATTGGTGGAGTTG 59.956 42.308 0.00 0.00 0.00 3.16
192 193 6.183361 GGATAGATAGGAATTGGTGGAGTTGT 60.183 42.308 0.00 0.00 0.00 3.32
193 194 5.520748 AGATAGGAATTGGTGGAGTTGTT 57.479 39.130 0.00 0.00 0.00 2.83
194 195 5.256474 AGATAGGAATTGGTGGAGTTGTTG 58.744 41.667 0.00 0.00 0.00 3.33
195 196 3.312736 AGGAATTGGTGGAGTTGTTGT 57.687 42.857 0.00 0.00 0.00 3.32
196 197 3.642141 AGGAATTGGTGGAGTTGTTGTT 58.358 40.909 0.00 0.00 0.00 2.83
197 198 4.030216 AGGAATTGGTGGAGTTGTTGTTT 58.970 39.130 0.00 0.00 0.00 2.83
198 199 5.205056 AGGAATTGGTGGAGTTGTTGTTTA 58.795 37.500 0.00 0.00 0.00 2.01
199 200 5.838521 AGGAATTGGTGGAGTTGTTGTTTAT 59.161 36.000 0.00 0.00 0.00 1.40
200 201 6.326323 AGGAATTGGTGGAGTTGTTGTTTATT 59.674 34.615 0.00 0.00 0.00 1.40
201 202 6.423604 GGAATTGGTGGAGTTGTTGTTTATTG 59.576 38.462 0.00 0.00 0.00 1.90
202 203 4.314740 TGGTGGAGTTGTTGTTTATTGC 57.685 40.909 0.00 0.00 0.00 3.56
203 204 3.957497 TGGTGGAGTTGTTGTTTATTGCT 59.043 39.130 0.00 0.00 0.00 3.91
204 205 4.404073 TGGTGGAGTTGTTGTTTATTGCTT 59.596 37.500 0.00 0.00 0.00 3.91
205 206 4.744631 GGTGGAGTTGTTGTTTATTGCTTG 59.255 41.667 0.00 0.00 0.00 4.01
206 207 5.451242 GGTGGAGTTGTTGTTTATTGCTTGA 60.451 40.000 0.00 0.00 0.00 3.02
207 208 5.687285 GTGGAGTTGTTGTTTATTGCTTGAG 59.313 40.000 0.00 0.00 0.00 3.02
208 209 4.681483 GGAGTTGTTGTTTATTGCTTGAGC 59.319 41.667 0.00 0.00 42.50 4.26
209 210 4.620982 AGTTGTTGTTTATTGCTTGAGCC 58.379 39.130 0.00 0.00 41.18 4.70
210 211 4.099266 AGTTGTTGTTTATTGCTTGAGCCA 59.901 37.500 0.00 0.00 41.18 4.75
211 212 3.976169 TGTTGTTTATTGCTTGAGCCAC 58.024 40.909 0.00 0.00 41.18 5.01
212 213 2.979813 GTTGTTTATTGCTTGAGCCACG 59.020 45.455 0.00 0.00 41.18 4.94
213 214 2.226330 TGTTTATTGCTTGAGCCACGT 58.774 42.857 0.00 0.00 41.18 4.49
214 215 2.031245 TGTTTATTGCTTGAGCCACGTG 60.031 45.455 9.08 9.08 41.18 4.49
215 216 1.890876 TTATTGCTTGAGCCACGTGT 58.109 45.000 15.65 0.00 41.18 4.49
216 217 2.753055 TATTGCTTGAGCCACGTGTA 57.247 45.000 15.65 0.00 41.18 2.90
217 218 1.156736 ATTGCTTGAGCCACGTGTAC 58.843 50.000 15.65 6.24 41.18 2.90
218 219 0.179070 TTGCTTGAGCCACGTGTACA 60.179 50.000 15.65 8.52 41.18 2.90
219 220 0.034756 TGCTTGAGCCACGTGTACAT 59.965 50.000 15.65 0.00 41.18 2.29
220 221 1.273886 TGCTTGAGCCACGTGTACATA 59.726 47.619 15.65 0.00 41.18 2.29
221 222 2.093711 TGCTTGAGCCACGTGTACATAT 60.094 45.455 15.65 0.00 41.18 1.78
222 223 3.131400 TGCTTGAGCCACGTGTACATATA 59.869 43.478 15.65 0.00 41.18 0.86
223 224 4.202212 TGCTTGAGCCACGTGTACATATAT 60.202 41.667 15.65 0.00 41.18 0.86
224 225 5.010213 TGCTTGAGCCACGTGTACATATATA 59.990 40.000 15.65 0.00 41.18 0.86
225 226 6.100004 GCTTGAGCCACGTGTACATATATAT 58.900 40.000 15.65 0.00 34.31 0.86
226 227 7.094118 TGCTTGAGCCACGTGTACATATATATA 60.094 37.037 15.65 0.00 41.18 0.86
227 228 7.921214 GCTTGAGCCACGTGTACATATATATAT 59.079 37.037 15.65 0.00 34.31 0.86
230 231 9.063615 TGAGCCACGTGTACATATATATATAGG 57.936 37.037 15.65 11.87 0.00 2.57
231 232 9.281371 GAGCCACGTGTACATATATATATAGGA 57.719 37.037 18.72 1.76 0.00 2.94
232 233 9.286170 AGCCACGTGTACATATATATATAGGAG 57.714 37.037 18.72 9.00 0.00 3.69
233 234 9.064706 GCCACGTGTACATATATATATAGGAGT 57.935 37.037 18.72 13.32 0.00 3.85
252 253 9.914834 ATAGGAGTACAATACCAATTTAAAGCA 57.085 29.630 0.00 0.00 0.00 3.91
253 254 8.281212 AGGAGTACAATACCAATTTAAAGCAG 57.719 34.615 0.00 0.00 0.00 4.24
254 255 7.888546 AGGAGTACAATACCAATTTAAAGCAGT 59.111 33.333 0.00 0.00 0.00 4.40
255 256 9.169592 GGAGTACAATACCAATTTAAAGCAGTA 57.830 33.333 0.00 0.00 0.00 2.74
256 257 9.983804 GAGTACAATACCAATTTAAAGCAGTAC 57.016 33.333 0.00 0.00 0.00 2.73
257 258 9.734984 AGTACAATACCAATTTAAAGCAGTACT 57.265 29.630 0.00 0.00 34.26 2.73
258 259 9.983804 GTACAATACCAATTTAAAGCAGTACTC 57.016 33.333 0.00 0.00 0.00 2.59
259 260 8.051901 ACAATACCAATTTAAAGCAGTACTCC 57.948 34.615 0.00 0.00 0.00 3.85
260 261 7.122204 ACAATACCAATTTAAAGCAGTACTCCC 59.878 37.037 0.00 0.00 0.00 4.30
261 262 5.256806 ACCAATTTAAAGCAGTACTCCCT 57.743 39.130 0.00 0.00 0.00 4.20
262 263 5.254115 ACCAATTTAAAGCAGTACTCCCTC 58.746 41.667 0.00 0.00 0.00 4.30
263 264 5.014228 ACCAATTTAAAGCAGTACTCCCTCT 59.986 40.000 0.00 0.00 0.00 3.69
264 265 5.355350 CCAATTTAAAGCAGTACTCCCTCTG 59.645 44.000 0.00 0.00 35.12 3.35
265 266 5.763876 ATTTAAAGCAGTACTCCCTCTGT 57.236 39.130 0.00 0.00 34.57 3.41
266 267 6.869206 ATTTAAAGCAGTACTCCCTCTGTA 57.131 37.500 0.00 0.00 34.57 2.74
267 268 6.675413 TTTAAAGCAGTACTCCCTCTGTAA 57.325 37.500 0.00 0.00 34.57 2.41
268 269 6.675413 TTAAAGCAGTACTCCCTCTGTAAA 57.325 37.500 0.00 0.00 34.57 2.01
269 270 5.763876 AAAGCAGTACTCCCTCTGTAAAT 57.236 39.130 0.00 0.00 34.57 1.40
270 271 5.763876 AAGCAGTACTCCCTCTGTAAATT 57.236 39.130 0.00 0.00 34.57 1.82
271 272 6.869206 AAGCAGTACTCCCTCTGTAAATTA 57.131 37.500 0.00 0.00 34.57 1.40
272 273 6.869206 AGCAGTACTCCCTCTGTAAATTAA 57.131 37.500 0.00 0.00 34.57 1.40
273 274 7.439108 AGCAGTACTCCCTCTGTAAATTAAT 57.561 36.000 0.00 0.00 34.57 1.40
274 275 8.548880 AGCAGTACTCCCTCTGTAAATTAATA 57.451 34.615 0.00 0.00 34.57 0.98
275 276 9.160412 AGCAGTACTCCCTCTGTAAATTAATAT 57.840 33.333 0.00 0.00 34.57 1.28
282 283 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
283 284 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
284 285 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
300 301 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
301 302 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
302 303 7.474190 AGAGCGTTTAGATCACTACTTTAGTC 58.526 38.462 0.00 0.00 37.82 2.59
303 304 7.120873 AGAGCGTTTAGATCACTACTTTAGTCA 59.879 37.037 0.00 0.00 37.82 3.41
304 305 7.773149 AGCGTTTAGATCACTACTTTAGTCAT 58.227 34.615 0.00 0.00 36.76 3.06
305 306 7.916450 AGCGTTTAGATCACTACTTTAGTCATC 59.084 37.037 0.00 0.00 36.65 2.92
306 307 7.916450 GCGTTTAGATCACTACTTTAGTCATCT 59.084 37.037 5.26 5.26 46.42 2.90
312 313 7.916450 AGATCACTACTTTAGTCATCTAAACGC 59.084 37.037 0.00 0.00 43.56 4.84
313 314 7.154435 TCACTACTTTAGTCATCTAAACGCT 57.846 36.000 0.00 0.00 40.05 5.07
314 315 7.249147 TCACTACTTTAGTCATCTAAACGCTC 58.751 38.462 0.00 0.00 40.05 5.03
315 316 7.120873 TCACTACTTTAGTCATCTAAACGCTCT 59.879 37.037 0.00 0.00 40.05 4.09
316 317 8.396390 CACTACTTTAGTCATCTAAACGCTCTA 58.604 37.037 0.00 0.00 40.05 2.43
317 318 8.954350 ACTACTTTAGTCATCTAAACGCTCTAA 58.046 33.333 0.00 0.00 40.05 2.10
318 319 9.784680 CTACTTTAGTCATCTAAACGCTCTAAA 57.215 33.333 0.00 0.00 40.05 1.85
320 321 9.141400 ACTTTAGTCATCTAAACGCTCTAAAAG 57.859 33.333 0.00 0.00 40.05 2.27
321 322 7.521509 TTAGTCATCTAAACGCTCTAAAAGC 57.478 36.000 0.00 0.00 39.04 3.51
322 323 7.094631 TTAGTCATCTAAACGCTCTAAAAGCA 58.905 34.615 0.00 0.00 40.66 3.91
323 324 7.764443 TTAGTCATCTAAACGCTCTAAAAGCAT 59.236 33.333 0.00 0.00 40.66 3.79
343 344 9.944376 AAAGCATTTAGATGACTAAAGTAGTGA 57.056 29.630 0.00 0.00 46.97 3.41
345 346 9.757227 AGCATTTAGATGACTAAAGTAGTGATC 57.243 33.333 6.73 6.73 46.97 2.92
352 353 7.988904 ATGACTAAAGTAGTGATCTAAACGC 57.011 36.000 0.00 0.00 39.59 4.84
353 354 7.154435 TGACTAAAGTAGTGATCTAAACGCT 57.846 36.000 0.00 0.00 39.59 5.07
354 355 7.249147 TGACTAAAGTAGTGATCTAAACGCTC 58.751 38.462 0.00 0.00 39.59 5.03
355 356 7.120873 TGACTAAAGTAGTGATCTAAACGCTCT 59.879 37.037 0.00 0.00 39.59 4.09
356 357 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
357 358 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
358 359 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
390 391 9.622004 TTTGAGACTAAAGTAGTGATCTAAACG 57.378 33.333 0.00 0.00 39.59 3.60
391 392 7.249147 TGAGACTAAAGTAGTGATCTAAACGC 58.751 38.462 0.00 0.00 39.59 4.84
392 393 7.120873 TGAGACTAAAGTAGTGATCTAAACGCT 59.879 37.037 0.00 0.00 39.59 5.07
393 394 7.828712 AGACTAAAGTAGTGATCTAAACGCTT 58.171 34.615 0.00 0.00 39.59 4.68
394 395 8.305317 AGACTAAAGTAGTGATCTAAACGCTTT 58.695 33.333 0.00 3.97 39.59 3.51
395 396 8.828688 ACTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 37.69 2.27
396 397 9.918630 ACTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 37.69 1.52
429 430 9.918630 TTTGAGCGTTTAGATAACTAAAGTAGT 57.081 29.630 5.51 0.00 45.42 2.73
430 431 8.906636 TGAGCGTTTAGATAACTAAAGTAGTG 57.093 34.615 5.51 0.00 45.42 2.74
431 432 8.733458 TGAGCGTTTAGATAACTAAAGTAGTGA 58.267 33.333 5.51 0.00 45.42 3.41
432 433 9.733219 GAGCGTTTAGATAACTAAAGTAGTGAT 57.267 33.333 5.51 0.00 45.42 3.06
433 434 9.733219 AGCGTTTAGATAACTAAAGTAGTGATC 57.267 33.333 5.51 5.03 45.42 2.92
441 442 9.733219 GATAACTAAAGTAGTGATCTAAACGCT 57.267 33.333 5.75 0.00 41.55 5.07
442 443 9.733219 ATAACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.39 5.03
443 444 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
444 445 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
445 446 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
446 447 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
462 463 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
574 576 0.312729 ATTTTCCACGCGGGTCAAAC 59.687 50.000 12.47 0.00 38.11 2.93
673 675 1.376424 AAGTGCATGTGAGCTCGGG 60.376 57.895 9.64 0.00 33.52 5.14
680 682 2.865670 GCATGTGAGCTCGGGATTAGAG 60.866 54.545 9.64 0.00 38.68 2.43
684 686 1.253100 GAGCTCGGGATTAGAGGAGG 58.747 60.000 0.00 0.00 36.31 4.30
707 710 5.593968 GGCTTTCGAAAAAGAAAACCCTAA 58.406 37.500 12.41 0.00 43.90 2.69
907 910 0.100682 CGGCGAGAAGAAGGAATCGA 59.899 55.000 0.00 0.00 37.35 3.59
1200 1564 0.250553 CAACCCTAGCGAACCAACCA 60.251 55.000 0.00 0.00 0.00 3.67
1201 1565 0.475044 AACCCTAGCGAACCAACCAA 59.525 50.000 0.00 0.00 0.00 3.67
1261 1625 1.964373 TCGGTTGCTTCCTTTCGCC 60.964 57.895 0.00 0.00 0.00 5.54
1295 1659 1.069906 CGGAAGAGAAACCTGCGTTTG 60.070 52.381 0.00 0.00 42.34 2.93
1363 1727 2.066999 AAGAGCTCGGGGATGGTCC 61.067 63.158 8.37 0.00 35.23 4.46
1456 1820 3.232771 GTGAAGTACTTCGACGAGGTTC 58.767 50.000 26.35 12.95 42.28 3.62
1477 1841 0.407528 TGATGGGCAGCCCTTGTTTA 59.592 50.000 31.51 10.51 45.70 2.01
1498 1862 2.092103 AGTGTTACCAGAGCCACCAAAA 60.092 45.455 0.00 0.00 0.00 2.44
1592 1956 0.796312 CGGATCACGGGTTTCACTTG 59.204 55.000 0.00 0.00 39.42 3.16
1697 2062 9.371136 GTTGATCTCACTTGTACTGAATTCATA 57.629 33.333 8.96 1.35 0.00 2.15
1783 2149 3.326747 AGTGGTTCTATGCTTCGTTGAC 58.673 45.455 0.00 0.00 0.00 3.18
1785 2151 3.123621 GTGGTTCTATGCTTCGTTGACAG 59.876 47.826 0.00 0.00 0.00 3.51
1807 2173 1.066143 AGGAAGTGTAATGCAGACCCG 60.066 52.381 0.00 0.00 0.00 5.28
1864 2230 9.410556 TCTGCAGCAAAATTTACTTAAAGAATC 57.589 29.630 9.47 0.00 0.00 2.52
2212 2581 2.835705 CGGTCCATCGACGCTAGCT 61.836 63.158 13.93 0.00 40.17 3.32
2305 2674 6.663953 TGTATACCCTCTTCTATCCAGTATGC 59.336 42.308 0.00 0.00 31.97 3.14
2367 2736 7.307131 AGATTTTGTTCCATGTTCCATTTCT 57.693 32.000 0.00 0.00 0.00 2.52
2390 2759 7.466804 TCTTGGTCTGTTTGGGTTTATCTTAT 58.533 34.615 0.00 0.00 0.00 1.73
2511 2880 9.608617 CACATTCATTTCTGCATAACTATCATC 57.391 33.333 0.00 0.00 0.00 2.92
2777 3146 5.947228 TTAATCCTGTGAAAACTGCAGAG 57.053 39.130 23.35 4.91 32.39 3.35
2799 3168 7.968956 CAGAGATTTTCCTGTTTCATGATTCAG 59.031 37.037 16.08 16.08 0.00 3.02
2851 3220 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2854 3223 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2857 3226 3.816090 ACCACCACCACCACCACC 61.816 66.667 0.00 0.00 0.00 4.61
2873 3242 1.471327 CCACCACAACAACAAAGCCTG 60.471 52.381 0.00 0.00 0.00 4.85
3010 3379 4.597507 TCTTTGGTGATACTCCACTCCTTT 59.402 41.667 0.00 0.00 37.24 3.11
3116 3495 0.030705 ATGGAGCTTCTGGAGGCCTA 60.031 55.000 4.42 0.00 33.44 3.93
3197 3576 4.565652 GCTACCCCAACCCTATCACATATG 60.566 50.000 0.00 0.00 0.00 1.78
3248 3627 1.285667 TGGCCACACATCCATCTCAAT 59.714 47.619 0.00 0.00 0.00 2.57
3323 3703 4.022935 CACACTCAGTGCCATACAACATTT 60.023 41.667 4.13 0.00 42.15 2.32
3373 3753 2.224042 GCCTTTTAGCTTTTGTGGCACT 60.224 45.455 19.83 0.00 38.79 4.40
3582 3965 5.994887 TTGTTACTGTCTTTTGTGCGTAT 57.005 34.783 0.00 0.00 0.00 3.06
3794 4177 6.428465 TGCTTTAATGGTTTCTTACGTGATGA 59.572 34.615 0.00 0.00 0.00 2.92
3795 4178 7.120579 TGCTTTAATGGTTTCTTACGTGATGAT 59.879 33.333 0.00 0.00 0.00 2.45
3796 4179 7.429340 GCTTTAATGGTTTCTTACGTGATGATG 59.571 37.037 0.00 0.00 0.00 3.07
3948 4332 7.090173 GGCAAGCTAATCTTTCAATTGTTACA 58.910 34.615 5.13 0.00 31.27 2.41
4073 4457 5.568620 AACCAGGATGTCACTTCTAGTTT 57.431 39.130 0.00 0.00 0.00 2.66
4177 4561 8.723311 CAAGCAATTCAACATATGGTCAAAAAT 58.277 29.630 7.80 0.00 0.00 1.82
4321 4705 5.989168 TGTGAAATGTCATAGTTCGACAAGT 59.011 36.000 0.00 0.00 45.91 3.16
4378 4764 4.803088 TGAGTGTTACTTGCAAAACAATGC 59.197 37.500 18.57 11.82 46.58 3.56
4406 4792 7.624344 GCGTCAGATGCAGTTTAAAGATAAAGT 60.624 37.037 9.95 0.00 35.50 2.66
4422 4808 3.751479 AAAGTAGCCAAAGCCCAAAAG 57.249 42.857 0.00 0.00 41.25 2.27
4451 4837 5.108385 TCACCTTTCGCTTTCTGATTTTC 57.892 39.130 0.00 0.00 0.00 2.29
4754 5140 3.281727 TTTGATGGTCAGGTATGGAGC 57.718 47.619 0.00 0.00 0.00 4.70
4833 5221 1.682854 CAACCAGCATGTTGACCAGTT 59.317 47.619 11.60 3.74 46.77 3.16
4896 5284 5.010213 TGTTTTACATACAAACTTCCCTGGC 59.990 40.000 0.00 0.00 35.50 4.85
4995 5383 1.881973 GTTTGCTGCTGATGAGGTCAA 59.118 47.619 0.00 0.00 36.14 3.18
5034 5422 1.172180 TTGTTTCAGCTGAAGGGGCG 61.172 55.000 27.02 0.00 35.21 6.13
5058 5446 0.475044 AGCCGGGTAACACTTCCAAA 59.525 50.000 3.10 0.00 39.74 3.28
5128 5516 3.623703 TCACCATGAGTTTATGCTGCAT 58.376 40.909 20.18 20.18 0.00 3.96
5302 5700 5.066505 GTGAAAAGTTGGTGAATGACAGACT 59.933 40.000 0.00 0.00 0.00 3.24
5314 5712 7.029563 GTGAATGACAGACTTTTTGAACTTGT 58.970 34.615 0.00 0.00 0.00 3.16
5352 5750 1.089920 CTGATGCTTCTTTGACCCCG 58.910 55.000 0.88 0.00 0.00 5.73
5385 5783 7.656707 AATGTTTCTTTGATTGGCATACAAC 57.343 32.000 6.41 0.00 42.94 3.32
5401 5799 8.519526 TGGCATACAACTAAAAGTAAAATCAGG 58.480 33.333 0.00 0.00 0.00 3.86
5409 5807 2.109425 AGTAAAATCAGGTCGTGGGC 57.891 50.000 0.00 0.00 0.00 5.36
5423 5821 2.005921 TGGGCAATGTGCTCCCATA 58.994 52.632 0.00 0.00 45.08 2.74
5424 5822 0.557238 TGGGCAATGTGCTCCCATAT 59.443 50.000 0.00 0.00 45.08 1.78
5426 5824 2.041701 GGGCAATGTGCTCCCATATTT 58.958 47.619 0.00 0.00 44.28 1.40
5432 5830 5.750067 GCAATGTGCTCCCATATTTAAACAG 59.250 40.000 0.00 0.00 40.96 3.16
5520 5947 2.026729 TGTTTCTCGGTCATGGCCATTA 60.027 45.455 17.92 5.19 0.00 1.90
5537 5966 9.743581 ATGGCCATTATTTTTCTTTTGATTTCT 57.256 25.926 14.09 0.00 0.00 2.52
5712 6141 1.113517 GGGCTACCTATCACTCGGCA 61.114 60.000 0.00 0.00 0.00 5.69
5750 6179 0.878086 TGCGCGAACTGTGTCATCAA 60.878 50.000 12.10 0.00 0.00 2.57
5791 6220 3.777106 TCTGACATTGGCAACTCTTCT 57.223 42.857 0.00 0.00 37.61 2.85
5858 6287 4.098654 CCGTTACTCTCTTCCAGTCATGAT 59.901 45.833 0.00 0.00 0.00 2.45
5867 6296 6.552725 TCTCTTCCAGTCATGATTAGCATAGT 59.447 38.462 0.00 0.00 34.82 2.12
5874 6311 3.069443 TCATGATTAGCATAGTCGCACCA 59.931 43.478 0.00 0.00 34.82 4.17
5905 6342 1.094650 TGATGTACGCGGCATGCAAT 61.095 50.000 21.36 3.67 46.97 3.56
5926 6364 0.322816 TCTGTGAAGCATGCCCCTTC 60.323 55.000 15.66 12.53 39.26 3.46
6186 6634 8.141268 GGGAACAGAAATGTTAAAATCTGACAA 58.859 33.333 8.48 0.00 41.38 3.18
6204 6652 4.270245 ACAACTGGGTTGGCAAATTATG 57.730 40.909 0.00 0.00 46.50 1.90
6209 6657 4.244862 CTGGGTTGGCAAATTATGTTGTC 58.755 43.478 0.00 0.00 33.59 3.18
6232 6680 7.658167 TGTCGTGAGTATGACAATTTCCTTAAA 59.342 33.333 0.18 0.00 46.83 1.52
6234 6682 7.118680 TCGTGAGTATGACAATTTCCTTAAACC 59.881 37.037 0.00 0.00 0.00 3.27
6287 6736 8.067784 GCTTAAAAAGAAAACTATTTGCCAACC 58.932 33.333 0.00 0.00 0.00 3.77
6288 6737 6.597262 AAAAAGAAAACTATTTGCCAACCG 57.403 33.333 0.00 0.00 0.00 4.44
6292 6741 0.406361 AACTATTTGCCAACCGGGGA 59.594 50.000 6.32 0.00 37.04 4.81
6297 6746 0.185416 TTTGCCAACCGGGGAGTTAA 59.815 50.000 6.32 0.00 38.72 2.01
6298 6747 0.537828 TTGCCAACCGGGGAGTTAAC 60.538 55.000 6.32 0.00 38.72 2.01
6299 6748 1.676635 GCCAACCGGGGAGTTAACC 60.677 63.158 6.32 0.00 37.04 2.85
6302 6751 1.629861 CCAACCGGGGAGTTAACCTTA 59.370 52.381 6.32 0.00 0.00 2.69
6304 6753 0.897621 ACCGGGGAGTTAACCTTACG 59.102 55.000 6.32 2.86 0.00 3.18
6305 6754 0.897621 CCGGGGAGTTAACCTTACGT 59.102 55.000 0.88 0.00 0.00 3.57
6306 6755 1.404583 CCGGGGAGTTAACCTTACGTG 60.405 57.143 0.88 0.00 0.00 4.49
6307 6756 1.273327 CGGGGAGTTAACCTTACGTGT 59.727 52.381 0.88 0.00 0.00 4.49
6308 6757 2.691927 GGGGAGTTAACCTTACGTGTG 58.308 52.381 0.88 0.00 0.00 3.82
6309 6758 2.299867 GGGGAGTTAACCTTACGTGTGA 59.700 50.000 0.88 0.00 0.00 3.58
6310 6759 3.320626 GGGAGTTAACCTTACGTGTGAC 58.679 50.000 0.88 0.00 0.00 3.67
6313 6762 4.209911 GGAGTTAACCTTACGTGTGACAAC 59.790 45.833 0.88 0.00 0.00 3.32
6314 6763 4.122046 AGTTAACCTTACGTGTGACAACC 58.878 43.478 0.88 0.00 0.00 3.77
6315 6764 2.994186 AACCTTACGTGTGACAACCT 57.006 45.000 0.00 0.00 0.00 3.50
6316 6765 2.521105 ACCTTACGTGTGACAACCTC 57.479 50.000 0.00 0.00 0.00 3.85
6318 6767 3.225104 ACCTTACGTGTGACAACCTCTA 58.775 45.455 0.00 0.00 0.00 2.43
6319 6768 3.638160 ACCTTACGTGTGACAACCTCTAA 59.362 43.478 0.00 0.00 0.00 2.10
6320 6769 4.235360 CCTTACGTGTGACAACCTCTAAG 58.765 47.826 0.00 0.00 0.00 2.18
6321 6770 2.814280 ACGTGTGACAACCTCTAAGG 57.186 50.000 0.00 0.00 42.49 2.69
6324 6901 2.417719 GTGTGACAACCTCTAAGGCAG 58.582 52.381 0.00 0.00 39.63 4.85
6360 6937 4.569564 ACCGAACACCTTTATAGCGAAATC 59.430 41.667 0.00 0.00 0.00 2.17
6365 6944 4.881850 ACACCTTTATAGCGAAATCCAAGG 59.118 41.667 0.00 0.00 36.23 3.61
6369 6948 5.237344 CCTTTATAGCGAAATCCAAGGACAG 59.763 44.000 0.00 0.00 32.51 3.51
6374 6953 3.441572 AGCGAAATCCAAGGACAGAAATG 59.558 43.478 0.00 0.00 0.00 2.32
6378 6957 6.569610 GCGAAATCCAAGGACAGAAATGTTAA 60.570 38.462 0.00 0.00 0.00 2.01
6382 6961 9.546428 AAATCCAAGGACAGAAATGTTAAAAAG 57.454 29.630 0.00 0.00 0.00 2.27
6383 6962 7.889873 TCCAAGGACAGAAATGTTAAAAAGA 57.110 32.000 0.00 0.00 0.00 2.52
6384 6963 8.299990 TCCAAGGACAGAAATGTTAAAAAGAA 57.700 30.769 0.00 0.00 0.00 2.52
6475 7054 6.683974 AGTTGGATCATCTATTTTGGAACG 57.316 37.500 0.00 0.00 0.00 3.95
6476 7055 5.590259 AGTTGGATCATCTATTTTGGAACGG 59.410 40.000 0.00 0.00 0.00 4.44
6477 7056 5.366482 TGGATCATCTATTTTGGAACGGA 57.634 39.130 0.00 0.00 0.00 4.69
6478 7057 5.368145 TGGATCATCTATTTTGGAACGGAG 58.632 41.667 0.00 0.00 0.00 4.63
6479 7058 4.757149 GGATCATCTATTTTGGAACGGAGG 59.243 45.833 0.00 0.00 0.00 4.30
6480 7059 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
6481 7060 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6482 7061 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6510 7089 0.391228 TCTAGCGCAACCAAGTGACA 59.609 50.000 11.47 0.00 0.00 3.58
6531 7116 7.011482 GTGACATAAATGTGTATCCCTTCAGAC 59.989 40.741 0.00 0.00 41.95 3.51
6583 7168 8.492673 TTTATGTCGCTGATTCTGACTAATTT 57.507 30.769 0.00 0.00 33.81 1.82
6648 7319 7.977853 ACTTTGCTTGAATATGAATCCAATGAC 59.022 33.333 0.00 0.00 0.00 3.06
6649 7320 7.407393 TTGCTTGAATATGAATCCAATGACA 57.593 32.000 0.00 0.00 0.00 3.58
6661 7332 7.613585 TGAATCCAATGACATGCTTTTTATGT 58.386 30.769 0.00 0.00 41.21 2.29
6666 7337 2.797491 GACATGCTTTTTATGTCCGGC 58.203 47.619 0.00 0.00 45.40 6.13
6667 7338 2.163412 GACATGCTTTTTATGTCCGGCA 59.837 45.455 0.00 0.00 45.40 5.69
6668 7339 2.760092 ACATGCTTTTTATGTCCGGCAT 59.240 40.909 14.43 14.43 40.38 4.40
6669 7340 2.937469 TGCTTTTTATGTCCGGCATG 57.063 45.000 18.08 5.54 38.47 4.06
6670 7341 1.135141 TGCTTTTTATGTCCGGCATGC 60.135 47.619 9.90 9.90 38.47 4.06
6673 7344 1.454201 TTTTATGTCCGGCATGCGAA 58.546 45.000 12.44 9.52 38.47 4.70
6674 7345 0.730265 TTTATGTCCGGCATGCGAAC 59.270 50.000 12.44 10.01 38.47 3.95
6687 7358 3.431912 GCATGCGAACGGAATATGATACA 59.568 43.478 0.00 0.00 0.00 2.29
6695 7366 7.619366 GCGAACGGAATATGATACAAGTACATG 60.619 40.741 0.00 0.00 0.00 3.21
6723 7394 6.725246 AGAAACTTTGTTTGAGTACGAATGG 58.275 36.000 0.10 0.00 0.00 3.16
6838 7509 9.758651 GGAACAAAATGTAAGACCTTTTTATGT 57.241 29.630 0.00 0.00 0.00 2.29
6845 7516 7.859325 TGTAAGACCTTTTTATGTCCTATGC 57.141 36.000 0.00 0.00 31.76 3.14
6846 7517 7.398829 TGTAAGACCTTTTTATGTCCTATGCA 58.601 34.615 0.00 0.00 31.76 3.96
6847 7518 7.885922 TGTAAGACCTTTTTATGTCCTATGCAA 59.114 33.333 0.00 0.00 31.76 4.08
6848 7519 7.775053 AAGACCTTTTTATGTCCTATGCAAA 57.225 32.000 0.00 0.00 31.76 3.68
6849 7520 7.775053 AGACCTTTTTATGTCCTATGCAAAA 57.225 32.000 0.00 0.00 31.76 2.44
6850 7521 8.366359 AGACCTTTTTATGTCCTATGCAAAAT 57.634 30.769 0.00 0.00 31.76 1.82
6851 7522 8.470002 AGACCTTTTTATGTCCTATGCAAAATC 58.530 33.333 0.00 0.00 31.76 2.17
6852 7523 8.133024 ACCTTTTTATGTCCTATGCAAAATCA 57.867 30.769 0.00 0.00 0.00 2.57
6853 7524 8.592809 ACCTTTTTATGTCCTATGCAAAATCAA 58.407 29.630 0.00 0.00 0.00 2.57
6854 7525 9.434420 CCTTTTTATGTCCTATGCAAAATCAAA 57.566 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.491323 AGAGAGTCTTTTTCCCGATTCTT 57.509 39.130 0.00 0.00 0.00 2.52
2 3 5.353111 CCTAGAGAGTCTTTTTCCCGATTC 58.647 45.833 0.00 0.00 0.00 2.52
5 6 3.097614 CCCTAGAGAGTCTTTTTCCCGA 58.902 50.000 0.00 0.00 0.00 5.14
6 7 2.418884 GCCCTAGAGAGTCTTTTTCCCG 60.419 54.545 0.00 0.00 0.00 5.14
7 8 2.572104 TGCCCTAGAGAGTCTTTTTCCC 59.428 50.000 0.00 0.00 0.00 3.97
8 9 3.867857 CTGCCCTAGAGAGTCTTTTTCC 58.132 50.000 0.00 0.00 0.00 3.13
9 10 3.266636 GCTGCCCTAGAGAGTCTTTTTC 58.733 50.000 0.00 0.00 0.00 2.29
11 12 1.557371 GGCTGCCCTAGAGAGTCTTTT 59.443 52.381 7.66 0.00 0.00 2.27
14 15 1.454847 CGGCTGCCCTAGAGAGTCT 60.455 63.158 14.12 0.00 0.00 3.24
15 16 2.494530 CCGGCTGCCCTAGAGAGTC 61.495 68.421 14.12 0.00 0.00 3.36
18 19 2.442272 GACCGGCTGCCCTAGAGA 60.442 66.667 14.12 0.00 0.00 3.10
19 20 3.905678 CGACCGGCTGCCCTAGAG 61.906 72.222 14.12 0.00 0.00 2.43
20 21 4.435970 TCGACCGGCTGCCCTAGA 62.436 66.667 14.12 4.91 0.00 2.43
21 22 4.208686 GTCGACCGGCTGCCCTAG 62.209 72.222 14.12 4.71 0.00 3.02
43 44 4.203076 CTAGGGTTCGTCCGCCGG 62.203 72.222 0.00 0.00 37.11 6.13
44 45 4.203076 CCTAGGGTTCGTCCGCCG 62.203 72.222 0.00 0.00 37.00 6.46
45 46 1.754234 TACCTAGGGTTCGTCCGCC 60.754 63.158 14.81 0.00 37.09 6.13
46 47 1.435105 GTACCTAGGGTTCGTCCGC 59.565 63.158 14.81 0.00 37.09 5.54
47 48 1.718757 CCGTACCTAGGGTTCGTCCG 61.719 65.000 14.81 4.08 43.23 4.79
48 49 0.394352 TCCGTACCTAGGGTTCGTCC 60.394 60.000 14.81 0.00 43.23 4.79
49 50 0.735471 GTCCGTACCTAGGGTTCGTC 59.265 60.000 14.81 6.49 43.23 4.20
50 51 1.026718 CGTCCGTACCTAGGGTTCGT 61.027 60.000 14.81 0.00 43.23 3.85
51 52 0.744414 TCGTCCGTACCTAGGGTTCG 60.744 60.000 14.81 13.78 44.11 3.95
52 53 0.735471 GTCGTCCGTACCTAGGGTTC 59.265 60.000 14.81 1.88 37.09 3.62
53 54 1.026718 CGTCGTCCGTACCTAGGGTT 61.027 60.000 14.81 0.00 37.09 4.11
54 55 1.450312 CGTCGTCCGTACCTAGGGT 60.450 63.158 14.81 1.17 40.16 4.34
55 56 2.828128 GCGTCGTCCGTACCTAGGG 61.828 68.421 14.81 0.00 39.32 3.53
56 57 2.711924 GCGTCGTCCGTACCTAGG 59.288 66.667 7.41 7.41 39.32 3.02
57 58 2.322422 CGCGTCGTCCGTACCTAG 59.678 66.667 0.00 0.00 39.32 3.02
58 59 3.195002 CCGCGTCGTCCGTACCTA 61.195 66.667 4.92 0.00 39.32 3.08
75 76 4.101448 ATGACTGTCGCTGGGGGC 62.101 66.667 2.98 0.00 37.64 5.80
76 77 2.124983 CATGACTGTCGCTGGGGG 60.125 66.667 2.98 0.00 0.00 5.40
77 78 2.124983 CCATGACTGTCGCTGGGG 60.125 66.667 17.11 5.35 0.00 4.96
78 79 1.153489 CTCCATGACTGTCGCTGGG 60.153 63.158 21.85 12.64 0.00 4.45
79 80 1.153489 CCTCCATGACTGTCGCTGG 60.153 63.158 18.24 18.24 0.00 4.85
80 81 1.812922 GCCTCCATGACTGTCGCTG 60.813 63.158 2.98 3.49 0.00 5.18
81 82 2.581354 GCCTCCATGACTGTCGCT 59.419 61.111 2.98 0.00 0.00 4.93
82 83 2.512515 GGCCTCCATGACTGTCGC 60.513 66.667 0.00 0.00 0.00 5.19
83 84 2.202797 CGGCCTCCATGACTGTCG 60.203 66.667 0.00 0.00 0.00 4.35
84 85 1.153549 GTCGGCCTCCATGACTGTC 60.154 63.158 0.00 0.00 0.00 3.51
85 86 2.660064 GGTCGGCCTCCATGACTGT 61.660 63.158 0.00 0.00 33.21 3.55
86 87 2.187946 GGTCGGCCTCCATGACTG 59.812 66.667 0.00 0.00 33.21 3.51
87 88 3.461773 CGGTCGGCCTCCATGACT 61.462 66.667 3.66 0.00 33.21 3.41
123 124 3.537206 ATCCAATCCTAGCCGCCGC 62.537 63.158 0.00 0.00 0.00 6.53
124 125 1.374758 GATCCAATCCTAGCCGCCG 60.375 63.158 0.00 0.00 0.00 6.46
125 126 1.374758 CGATCCAATCCTAGCCGCC 60.375 63.158 0.00 0.00 0.00 6.13
126 127 1.374758 CCGATCCAATCCTAGCCGC 60.375 63.158 0.00 0.00 0.00 6.53
127 128 0.393077 AACCGATCCAATCCTAGCCG 59.607 55.000 0.00 0.00 0.00 5.52
128 129 2.028020 CCTAACCGATCCAATCCTAGCC 60.028 54.545 0.00 0.00 0.00 3.93
129 130 2.613223 GCCTAACCGATCCAATCCTAGC 60.613 54.545 0.00 0.00 0.00 3.42
130 131 2.900546 AGCCTAACCGATCCAATCCTAG 59.099 50.000 0.00 0.00 0.00 3.02
131 132 2.632996 CAGCCTAACCGATCCAATCCTA 59.367 50.000 0.00 0.00 0.00 2.94
132 133 1.417890 CAGCCTAACCGATCCAATCCT 59.582 52.381 0.00 0.00 0.00 3.24
133 134 1.416401 TCAGCCTAACCGATCCAATCC 59.584 52.381 0.00 0.00 0.00 3.01
134 135 2.910688 TCAGCCTAACCGATCCAATC 57.089 50.000 0.00 0.00 0.00 2.67
135 136 3.008049 GGTATCAGCCTAACCGATCCAAT 59.992 47.826 0.00 0.00 0.00 3.16
136 137 2.367567 GGTATCAGCCTAACCGATCCAA 59.632 50.000 0.00 0.00 0.00 3.53
137 138 1.968493 GGTATCAGCCTAACCGATCCA 59.032 52.381 0.00 0.00 0.00 3.41
138 139 1.968493 TGGTATCAGCCTAACCGATCC 59.032 52.381 0.00 0.00 35.98 3.36
139 140 3.006967 ACATGGTATCAGCCTAACCGATC 59.993 47.826 0.00 0.00 35.98 3.69
140 141 2.972713 ACATGGTATCAGCCTAACCGAT 59.027 45.455 0.00 0.00 35.98 4.18
141 142 2.394632 ACATGGTATCAGCCTAACCGA 58.605 47.619 0.00 0.00 35.98 4.69
142 143 2.910688 ACATGGTATCAGCCTAACCG 57.089 50.000 0.00 0.00 35.98 4.44
143 144 5.546621 TCTAACATGGTATCAGCCTAACC 57.453 43.478 0.00 0.00 0.00 2.85
144 145 5.992217 CCTTCTAACATGGTATCAGCCTAAC 59.008 44.000 0.00 0.00 0.00 2.34
145 146 5.903010 TCCTTCTAACATGGTATCAGCCTAA 59.097 40.000 0.00 0.00 0.00 2.69
146 147 5.464069 TCCTTCTAACATGGTATCAGCCTA 58.536 41.667 0.00 0.00 0.00 3.93
147 148 4.298626 TCCTTCTAACATGGTATCAGCCT 58.701 43.478 0.00 0.00 0.00 4.58
148 149 4.689612 TCCTTCTAACATGGTATCAGCC 57.310 45.455 0.00 0.00 0.00 4.85
149 150 7.233389 TCTATCCTTCTAACATGGTATCAGC 57.767 40.000 0.00 0.00 0.00 4.26
151 152 9.480861 CCTATCTATCCTTCTAACATGGTATCA 57.519 37.037 0.00 0.00 0.00 2.15
152 153 9.702253 TCCTATCTATCCTTCTAACATGGTATC 57.298 37.037 0.00 0.00 0.00 2.24
155 156 8.980832 ATTCCTATCTATCCTTCTAACATGGT 57.019 34.615 0.00 0.00 0.00 3.55
156 157 9.664332 CAATTCCTATCTATCCTTCTAACATGG 57.336 37.037 0.00 0.00 0.00 3.66
157 158 9.664332 CCAATTCCTATCTATCCTTCTAACATG 57.336 37.037 0.00 0.00 0.00 3.21
158 159 9.398921 ACCAATTCCTATCTATCCTTCTAACAT 57.601 33.333 0.00 0.00 0.00 2.71
159 160 8.651389 CACCAATTCCTATCTATCCTTCTAACA 58.349 37.037 0.00 0.00 0.00 2.41
160 161 8.097662 CCACCAATTCCTATCTATCCTTCTAAC 58.902 40.741 0.00 0.00 0.00 2.34
161 162 8.016652 TCCACCAATTCCTATCTATCCTTCTAA 58.983 37.037 0.00 0.00 0.00 2.10
162 163 7.544650 TCCACCAATTCCTATCTATCCTTCTA 58.455 38.462 0.00 0.00 0.00 2.10
163 164 6.393897 TCCACCAATTCCTATCTATCCTTCT 58.606 40.000 0.00 0.00 0.00 2.85
164 165 6.271159 ACTCCACCAATTCCTATCTATCCTTC 59.729 42.308 0.00 0.00 0.00 3.46
165 166 6.153924 ACTCCACCAATTCCTATCTATCCTT 58.846 40.000 0.00 0.00 0.00 3.36
166 167 5.731924 ACTCCACCAATTCCTATCTATCCT 58.268 41.667 0.00 0.00 0.00 3.24
167 168 6.183361 ACAACTCCACCAATTCCTATCTATCC 60.183 42.308 0.00 0.00 0.00 2.59
168 169 6.831976 ACAACTCCACCAATTCCTATCTATC 58.168 40.000 0.00 0.00 0.00 2.08
169 170 6.831664 ACAACTCCACCAATTCCTATCTAT 57.168 37.500 0.00 0.00 0.00 1.98
170 171 6.012858 ACAACAACTCCACCAATTCCTATCTA 60.013 38.462 0.00 0.00 0.00 1.98
171 172 5.222130 ACAACAACTCCACCAATTCCTATCT 60.222 40.000 0.00 0.00 0.00 1.98
172 173 5.010282 ACAACAACTCCACCAATTCCTATC 58.990 41.667 0.00 0.00 0.00 2.08
173 174 4.998051 ACAACAACTCCACCAATTCCTAT 58.002 39.130 0.00 0.00 0.00 2.57
174 175 4.447138 ACAACAACTCCACCAATTCCTA 57.553 40.909 0.00 0.00 0.00 2.94
175 176 3.312736 ACAACAACTCCACCAATTCCT 57.687 42.857 0.00 0.00 0.00 3.36
176 177 4.400529 AAACAACAACTCCACCAATTCC 57.599 40.909 0.00 0.00 0.00 3.01
177 178 6.073819 GCAATAAACAACAACTCCACCAATTC 60.074 38.462 0.00 0.00 0.00 2.17
178 179 5.757808 GCAATAAACAACAACTCCACCAATT 59.242 36.000 0.00 0.00 0.00 2.32
179 180 5.070313 AGCAATAAACAACAACTCCACCAAT 59.930 36.000 0.00 0.00 0.00 3.16
180 181 4.404073 AGCAATAAACAACAACTCCACCAA 59.596 37.500 0.00 0.00 0.00 3.67
181 182 3.957497 AGCAATAAACAACAACTCCACCA 59.043 39.130 0.00 0.00 0.00 4.17
182 183 4.584327 AGCAATAAACAACAACTCCACC 57.416 40.909 0.00 0.00 0.00 4.61
183 184 5.587289 TCAAGCAATAAACAACAACTCCAC 58.413 37.500 0.00 0.00 0.00 4.02
184 185 5.735922 GCTCAAGCAATAAACAACAACTCCA 60.736 40.000 0.00 0.00 41.59 3.86
185 186 4.681483 GCTCAAGCAATAAACAACAACTCC 59.319 41.667 0.00 0.00 41.59 3.85
186 187 4.681483 GGCTCAAGCAATAAACAACAACTC 59.319 41.667 4.13 0.00 44.36 3.01
187 188 4.099266 TGGCTCAAGCAATAAACAACAACT 59.901 37.500 4.13 0.00 44.36 3.16
188 189 4.209080 GTGGCTCAAGCAATAAACAACAAC 59.791 41.667 4.13 0.00 44.36 3.32
189 190 4.367450 GTGGCTCAAGCAATAAACAACAA 58.633 39.130 4.13 0.00 44.36 2.83
190 191 3.549827 CGTGGCTCAAGCAATAAACAACA 60.550 43.478 4.13 0.00 44.36 3.33
191 192 2.979813 CGTGGCTCAAGCAATAAACAAC 59.020 45.455 4.13 0.00 44.36 3.32
192 193 2.621055 ACGTGGCTCAAGCAATAAACAA 59.379 40.909 4.13 0.00 44.36 2.83
193 194 2.031245 CACGTGGCTCAAGCAATAAACA 60.031 45.455 7.95 0.00 44.36 2.83
194 195 2.031157 ACACGTGGCTCAAGCAATAAAC 60.031 45.455 21.57 0.00 44.36 2.01
195 196 2.226330 ACACGTGGCTCAAGCAATAAA 58.774 42.857 21.57 0.00 44.36 1.40
196 197 1.890876 ACACGTGGCTCAAGCAATAA 58.109 45.000 21.57 0.00 44.36 1.40
197 198 2.289133 TGTACACGTGGCTCAAGCAATA 60.289 45.455 21.57 0.00 44.36 1.90
198 199 1.156736 GTACACGTGGCTCAAGCAAT 58.843 50.000 21.57 0.00 44.36 3.56
199 200 0.179070 TGTACACGTGGCTCAAGCAA 60.179 50.000 21.57 0.00 44.36 3.91
200 201 0.034756 ATGTACACGTGGCTCAAGCA 59.965 50.000 21.57 7.80 44.36 3.91
201 202 2.004583 TATGTACACGTGGCTCAAGC 57.995 50.000 21.57 2.21 41.14 4.01
204 205 9.063615 CCTATATATATATGTACACGTGGCTCA 57.936 37.037 21.57 15.31 0.00 4.26
205 206 9.281371 TCCTATATATATATGTACACGTGGCTC 57.719 37.037 21.57 10.00 0.00 4.70
206 207 9.286170 CTCCTATATATATATGTACACGTGGCT 57.714 37.037 21.57 1.59 0.00 4.75
207 208 9.064706 ACTCCTATATATATATGTACACGTGGC 57.935 37.037 21.57 12.76 0.00 5.01
226 227 9.914834 TGCTTTAAATTGGTATTGTACTCCTAT 57.085 29.630 0.00 0.00 0.00 2.57
227 228 9.391006 CTGCTTTAAATTGGTATTGTACTCCTA 57.609 33.333 0.00 0.00 0.00 2.94
228 229 7.888546 ACTGCTTTAAATTGGTATTGTACTCCT 59.111 33.333 0.00 0.00 0.00 3.69
229 230 8.051901 ACTGCTTTAAATTGGTATTGTACTCC 57.948 34.615 0.00 0.00 0.00 3.85
230 231 9.983804 GTACTGCTTTAAATTGGTATTGTACTC 57.016 33.333 0.00 0.00 0.00 2.59
231 232 9.734984 AGTACTGCTTTAAATTGGTATTGTACT 57.265 29.630 0.00 0.00 33.35 2.73
232 233 9.983804 GAGTACTGCTTTAAATTGGTATTGTAC 57.016 33.333 0.00 0.00 0.00 2.90
233 234 9.169592 GGAGTACTGCTTTAAATTGGTATTGTA 57.830 33.333 7.20 0.00 0.00 2.41
234 235 7.122204 GGGAGTACTGCTTTAAATTGGTATTGT 59.878 37.037 14.52 0.00 0.00 2.71
235 236 7.339466 AGGGAGTACTGCTTTAAATTGGTATTG 59.661 37.037 14.52 0.00 0.00 1.90
236 237 7.410991 AGGGAGTACTGCTTTAAATTGGTATT 58.589 34.615 14.52 0.00 0.00 1.89
237 238 6.970191 AGGGAGTACTGCTTTAAATTGGTAT 58.030 36.000 14.52 0.00 0.00 2.73
238 239 6.214819 AGAGGGAGTACTGCTTTAAATTGGTA 59.785 38.462 14.52 0.00 0.00 3.25
239 240 5.014228 AGAGGGAGTACTGCTTTAAATTGGT 59.986 40.000 14.52 0.00 0.00 3.67
240 241 5.355350 CAGAGGGAGTACTGCTTTAAATTGG 59.645 44.000 14.52 0.00 0.00 3.16
241 242 5.940470 ACAGAGGGAGTACTGCTTTAAATTG 59.060 40.000 14.52 6.27 37.61 2.32
242 243 6.128138 ACAGAGGGAGTACTGCTTTAAATT 57.872 37.500 14.52 0.00 37.61 1.82
243 244 5.763876 ACAGAGGGAGTACTGCTTTAAAT 57.236 39.130 14.52 0.00 37.61 1.40
244 245 6.675413 TTACAGAGGGAGTACTGCTTTAAA 57.325 37.500 14.52 0.00 37.61 1.52
245 246 6.675413 TTTACAGAGGGAGTACTGCTTTAA 57.325 37.500 14.52 0.01 37.61 1.52
246 247 6.869206 ATTTACAGAGGGAGTACTGCTTTA 57.131 37.500 14.52 0.00 37.61 1.85
247 248 5.763876 ATTTACAGAGGGAGTACTGCTTT 57.236 39.130 14.52 3.04 37.61 3.51
248 249 5.763876 AATTTACAGAGGGAGTACTGCTT 57.236 39.130 14.52 6.52 37.61 3.91
249 250 6.869206 TTAATTTACAGAGGGAGTACTGCT 57.131 37.500 14.52 0.15 37.61 4.24
256 257 9.360093 CGCTCTTATATTAATTTACAGAGGGAG 57.640 37.037 20.74 5.24 40.49 4.30
257 258 8.867097 ACGCTCTTATATTAATTTACAGAGGGA 58.133 33.333 25.54 1.67 40.49 4.20
258 259 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
274 275 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
275 276 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
276 277 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
277 278 7.120873 TGACTAAAGTAGTGATCTAAACGCTCT 59.879 37.037 0.00 0.00 39.59 4.09
278 279 7.249147 TGACTAAAGTAGTGATCTAAACGCTC 58.751 38.462 0.00 0.00 39.59 5.03
279 280 7.154435 TGACTAAAGTAGTGATCTAAACGCT 57.846 36.000 0.00 0.00 39.59 5.07
280 281 7.988904 ATGACTAAAGTAGTGATCTAAACGC 57.011 36.000 0.00 0.00 39.59 4.84
287 288 7.916450 AGCGTTTAGATGACTAAAGTAGTGATC 59.084 37.037 6.73 6.73 45.85 2.92
288 289 7.773149 AGCGTTTAGATGACTAAAGTAGTGAT 58.227 34.615 0.00 0.00 45.42 3.06
289 290 7.120873 AGAGCGTTTAGATGACTAAAGTAGTGA 59.879 37.037 0.00 0.00 45.42 3.41
290 291 7.251994 AGAGCGTTTAGATGACTAAAGTAGTG 58.748 38.462 0.00 0.00 45.42 2.74
291 292 7.393841 AGAGCGTTTAGATGACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
292 293 9.784680 TTTAGAGCGTTTAGATGACTAAAGTAG 57.215 33.333 0.00 0.00 45.42 2.57
294 295 9.141400 CTTTTAGAGCGTTTAGATGACTAAAGT 57.859 33.333 0.00 0.00 45.42 2.66
295 296 8.111224 GCTTTTAGAGCGTTTAGATGACTAAAG 58.889 37.037 0.00 0.00 43.21 1.85
296 297 7.960793 GCTTTTAGAGCGTTTAGATGACTAAA 58.039 34.615 0.00 0.00 41.98 1.85
297 298 7.521509 GCTTTTAGAGCGTTTAGATGACTAA 57.478 36.000 0.00 0.00 42.46 2.24
317 318 9.944376 TCACTACTTTAGTCATCTAAATGCTTT 57.056 29.630 1.75 0.00 42.75 3.51
319 320 9.757227 GATCACTACTTTAGTCATCTAAATGCT 57.243 33.333 1.75 0.00 42.75 3.79
320 321 9.757227 AGATCACTACTTTAGTCATCTAAATGC 57.243 33.333 0.00 0.00 43.56 3.56
326 327 7.916450 GCGTTTAGATCACTACTTTAGTCATCT 59.084 37.037 5.26 5.26 46.42 2.90
327 328 7.916450 AGCGTTTAGATCACTACTTTAGTCATC 59.084 37.037 0.00 0.00 36.65 2.92
328 329 7.773149 AGCGTTTAGATCACTACTTTAGTCAT 58.227 34.615 0.00 0.00 36.76 3.06
329 330 7.120873 AGAGCGTTTAGATCACTACTTTAGTCA 59.879 37.037 0.00 0.00 37.82 3.41
330 331 7.474190 AGAGCGTTTAGATCACTACTTTAGTC 58.526 38.462 0.00 0.00 37.82 2.59
331 332 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
332 333 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
364 365 9.622004 CGTTTAGATCACTACTTTAGTCTCAAA 57.378 33.333 0.00 0.00 36.76 2.69
365 366 7.754027 GCGTTTAGATCACTACTTTAGTCTCAA 59.246 37.037 0.00 0.00 36.76 3.02
366 367 7.120873 AGCGTTTAGATCACTACTTTAGTCTCA 59.879 37.037 0.00 0.00 36.76 3.27
367 368 7.474190 AGCGTTTAGATCACTACTTTAGTCTC 58.526 38.462 0.00 0.00 36.76 3.36
368 369 7.393841 AGCGTTTAGATCACTACTTTAGTCT 57.606 36.000 0.00 0.00 36.76 3.24
369 370 8.463456 AAAGCGTTTAGATCACTACTTTAGTC 57.537 34.615 0.00 0.00 36.76 2.59
370 371 8.828688 AAAAGCGTTTAGATCACTACTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
403 404 9.918630 ACTACTTTAGTTATCTAAACGCTCAAA 57.081 29.630 2.47 0.00 40.05 2.69
404 405 9.350357 CACTACTTTAGTTATCTAAACGCTCAA 57.650 33.333 2.47 0.00 40.05 3.02
405 406 8.733458 TCACTACTTTAGTTATCTAAACGCTCA 58.267 33.333 2.47 0.00 40.05 4.26
406 407 9.733219 ATCACTACTTTAGTTATCTAAACGCTC 57.267 33.333 2.47 0.00 40.05 5.03
407 408 9.733219 GATCACTACTTTAGTTATCTAAACGCT 57.267 33.333 2.47 0.00 40.05 5.07
408 409 9.733219 AGATCACTACTTTAGTTATCTAAACGC 57.267 33.333 7.85 0.00 43.99 4.84
414 415 9.733219 GCGTTTAGATCACTACTTTAGTTATCT 57.267 33.333 12.46 12.46 46.18 1.98
415 416 9.733219 AGCGTTTAGATCACTACTTTAGTTATC 57.267 33.333 0.00 0.95 38.88 1.75
416 417 9.733219 GAGCGTTTAGATCACTACTTTAGTTAT 57.267 33.333 0.00 0.00 36.76 1.89
417 418 8.954350 AGAGCGTTTAGATCACTACTTTAGTTA 58.046 33.333 0.00 0.00 37.82 2.24
418 419 7.828712 AGAGCGTTTAGATCACTACTTTAGTT 58.171 34.615 0.00 0.00 37.82 2.24
419 420 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
420 421 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
436 437 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
437 438 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
438 439 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
447 448 9.802039 TGTTTTGTACTCCCTCTGTAAATTAAT 57.198 29.630 0.00 0.00 0.00 1.40
448 449 9.629878 TTGTTTTGTACTCCCTCTGTAAATTAA 57.370 29.630 0.00 0.00 0.00 1.40
449 450 9.280174 CTTGTTTTGTACTCCCTCTGTAAATTA 57.720 33.333 0.00 0.00 0.00 1.40
450 451 7.230712 CCTTGTTTTGTACTCCCTCTGTAAATT 59.769 37.037 0.00 0.00 0.00 1.82
451 452 6.715264 CCTTGTTTTGTACTCCCTCTGTAAAT 59.285 38.462 0.00 0.00 0.00 1.40
452 453 6.059484 CCTTGTTTTGTACTCCCTCTGTAAA 58.941 40.000 0.00 0.00 0.00 2.01
453 454 5.617252 CCTTGTTTTGTACTCCCTCTGTAA 58.383 41.667 0.00 0.00 0.00 2.41
454 455 4.504340 GCCTTGTTTTGTACTCCCTCTGTA 60.504 45.833 0.00 0.00 0.00 2.74
455 456 3.747708 GCCTTGTTTTGTACTCCCTCTGT 60.748 47.826 0.00 0.00 0.00 3.41
456 457 2.814336 GCCTTGTTTTGTACTCCCTCTG 59.186 50.000 0.00 0.00 0.00 3.35
457 458 2.441750 TGCCTTGTTTTGTACTCCCTCT 59.558 45.455 0.00 0.00 0.00 3.69
458 459 2.814336 CTGCCTTGTTTTGTACTCCCTC 59.186 50.000 0.00 0.00 0.00 4.30
459 460 2.489073 CCTGCCTTGTTTTGTACTCCCT 60.489 50.000 0.00 0.00 0.00 4.20
460 461 1.886542 CCTGCCTTGTTTTGTACTCCC 59.113 52.381 0.00 0.00 0.00 4.30
461 462 2.858745 TCCTGCCTTGTTTTGTACTCC 58.141 47.619 0.00 0.00 0.00 3.85
462 463 3.630312 TGTTCCTGCCTTGTTTTGTACTC 59.370 43.478 0.00 0.00 0.00 2.59
560 562 1.209127 GAATGTTTGACCCGCGTGG 59.791 57.895 8.42 8.42 41.37 4.94
673 675 3.821421 TTCGAAAGCCCTCCTCTAATC 57.179 47.619 0.00 0.00 0.00 1.75
680 682 4.049186 GTTTTCTTTTTCGAAAGCCCTCC 58.951 43.478 10.98 0.00 34.67 4.30
684 686 4.054780 AGGGTTTTCTTTTTCGAAAGCC 57.945 40.909 10.98 7.25 46.96 4.35
707 710 1.223417 CGTTACGTTTGCTTCCCCGT 61.223 55.000 0.00 0.00 37.33 5.28
907 910 1.374252 CGTGGGCTTGCGTCTACTT 60.374 57.895 0.00 0.00 0.00 2.24
1477 1841 1.136828 TTGGTGGCTCTGGTAACACT 58.863 50.000 0.00 0.00 46.17 3.55
1498 1862 5.887754 ACCACACCAATCAGTTAAGGTTAT 58.112 37.500 0.00 0.00 30.44 1.89
1592 1956 2.517450 CGACCAAGGATCGAAGCGC 61.517 63.158 0.00 0.00 42.25 5.92
1697 2062 8.348285 ACCAACAAACAAATGCTACTGTATAT 57.652 30.769 0.00 0.00 0.00 0.86
1783 2149 4.184629 GGTCTGCATTACACTTCCTACTG 58.815 47.826 0.00 0.00 0.00 2.74
1785 2151 3.532542 GGGTCTGCATTACACTTCCTAC 58.467 50.000 0.00 0.00 0.00 3.18
1807 2173 4.431661 ACTACGGCACTAAACTACTGAC 57.568 45.455 0.00 0.00 0.00 3.51
1864 2230 9.128107 CAAAGCATGTACAAGTTTTTATACCAG 57.872 33.333 9.77 0.00 0.00 4.00
1885 2251 5.910637 TTCACAAATCTCAAATGCAAAGC 57.089 34.783 0.00 0.00 0.00 3.51
2239 2608 2.221299 CCCAGGGAAAGTCGGTCCA 61.221 63.158 0.00 0.00 36.83 4.02
2305 2674 2.877043 GCAAGGGCTATTTGTCATGG 57.123 50.000 0.00 0.00 36.96 3.66
2367 2736 7.726291 TGAATAAGATAAACCCAAACAGACCAA 59.274 33.333 0.00 0.00 0.00 3.67
2390 2759 4.751767 AAACCCTGCAAAATCTTGTGAA 57.248 36.364 0.00 0.00 34.79 3.18
2511 2880 0.098376 GCTGAGAAGAAATGCTGCGG 59.902 55.000 0.00 0.00 0.00 5.69
2753 3122 6.149973 TCTCTGCAGTTTTCACAGGATTAATG 59.850 38.462 14.67 0.00 32.19 1.90
2799 3168 8.333186 GTTGTAAAACCAGATCGTATGGATTAC 58.667 37.037 6.49 13.12 40.51 1.89
2851 3220 1.639280 GCTTTGTTGTTGTGGTGGTG 58.361 50.000 0.00 0.00 0.00 4.17
2854 3223 1.476085 TCAGGCTTTGTTGTTGTGGTG 59.524 47.619 0.00 0.00 0.00 4.17
2857 3226 3.438360 GACTTCAGGCTTTGTTGTTGTG 58.562 45.455 0.00 0.00 0.00 3.33
2892 3261 3.108847 AGGTTTCAGCTCTAGCCTACT 57.891 47.619 0.00 0.00 43.38 2.57
3010 3379 5.825679 GCAGGAGTCTGTAAAGAGAGATCTA 59.174 44.000 0.00 0.00 42.78 1.98
3116 3495 1.102978 GGTTTGGGCATATTCAGCGT 58.897 50.000 0.00 0.00 0.00 5.07
3197 3576 4.438346 CGGGTCCGGAATGATGAC 57.562 61.111 5.23 0.00 35.56 3.06
3248 3627 0.318699 GTGTAGCGGAGATGCGCATA 60.319 55.000 25.40 2.04 39.19 3.14
3323 3703 4.183686 GACGGCGATTCGACCCGA 62.184 66.667 25.17 0.00 44.55 5.14
3557 3940 3.974401 CGCACAAAAGACAGTAACAATGG 59.026 43.478 0.00 0.00 0.00 3.16
3652 4035 4.572985 TCACCAAGCTGAAAACAAGATG 57.427 40.909 0.00 0.00 0.00 2.90
3794 4177 0.546122 TCCTGCCAAAGATACCGCAT 59.454 50.000 0.00 0.00 0.00 4.73
3795 4178 0.546122 ATCCTGCCAAAGATACCGCA 59.454 50.000 0.00 0.00 0.00 5.69
3796 4179 2.543777 TATCCTGCCAAAGATACCGC 57.456 50.000 0.00 0.00 0.00 5.68
4073 4457 6.291648 CTTCTCTAGCATGCCCAGAATATA 57.708 41.667 15.66 0.00 0.00 0.86
4122 4506 8.747471 TGCATGGAATCATTTATTGTTTACTGA 58.253 29.630 0.00 0.00 0.00 3.41
4239 4623 9.874205 CAAATTTCCACATTGTATTCTACCAAT 57.126 29.630 0.00 0.00 0.00 3.16
4422 4808 0.668535 AAGCGAAAGGTGAAACAGCC 59.331 50.000 0.00 0.00 43.76 4.85
4806 5194 2.363306 AACATGCTGGTTGAACCTCA 57.637 45.000 16.33 13.34 39.58 3.86
4833 5221 5.978919 GTGAGTCTGCAATGAAACAAAATCA 59.021 36.000 0.00 0.00 0.00 2.57
4896 5284 7.696755 TCATGTACGAATTGAAATCAGAATGG 58.303 34.615 0.00 0.00 36.16 3.16
5034 5422 3.431725 GTGTTACCCGGCTGCTGC 61.432 66.667 7.10 7.10 38.76 5.25
5058 5446 5.446143 TTGTTCGAGGTGTTATGCAATTT 57.554 34.783 0.00 0.00 0.00 1.82
5149 5537 8.552034 GCAAAGCTGATAGTTATAGGTTAACTG 58.448 37.037 5.42 0.00 38.16 3.16
5258 5646 5.800296 TCACGAAGGACCATTAAAAGATCA 58.200 37.500 0.00 0.00 0.00 2.92
5314 5712 9.123902 AGCATCAGTAACTCATTTATTTGCATA 57.876 29.630 0.00 0.00 0.00 3.14
5352 5750 8.282592 GCCAATCAAAGAAACATTTTCTTTACC 58.717 33.333 20.70 7.32 44.30 2.85
5385 5783 5.391629 GCCCACGACCTGATTTTACTTTTAG 60.392 44.000 0.00 0.00 0.00 1.85
5401 5799 2.690778 GGAGCACATTGCCCACGAC 61.691 63.158 0.00 0.00 46.52 4.34
5409 5807 5.750067 GCTGTTTAAATATGGGAGCACATTG 59.250 40.000 0.00 0.00 32.39 2.82
5424 5822 9.730420 GAAGTAAAAGAACTGATGCTGTTTAAA 57.270 29.630 0.00 0.00 0.00 1.52
5426 5824 8.677148 AGAAGTAAAAGAACTGATGCTGTTTA 57.323 30.769 0.00 0.00 0.00 2.01
5537 5966 8.615211 CATTAGTCAGTTAGCAAATAAGCATGA 58.385 33.333 0.00 0.00 36.85 3.07
5712 6141 3.503748 CGCAGGAAAAGAAGGTTTCTGAT 59.496 43.478 0.00 0.00 40.59 2.90
5750 6179 8.725148 GTCAGATCAGAGTGATAACAAACAAAT 58.275 33.333 0.00 0.00 37.20 2.32
5791 6220 1.216678 ACCTGTTGGTCAATGGGAACA 59.783 47.619 10.27 0.00 44.78 3.18
5858 6287 0.534873 TGCTGGTGCGACTATGCTAA 59.465 50.000 0.00 0.00 43.34 3.09
5874 6311 2.290287 TACATCAGGTGCGGGTGCT 61.290 57.895 0.00 0.00 43.34 4.40
5905 6342 1.303561 GGGGCATGCTTCACAGACA 60.304 57.895 18.92 0.00 0.00 3.41
6023 6462 6.073765 ACGCCGACATCATGATTAATTAGTTC 60.074 38.462 5.16 0.00 0.00 3.01
6092 6540 2.637382 TGTTCAAGGTATCCTGACAGCA 59.363 45.455 0.00 0.00 32.13 4.41
6186 6634 3.645687 ACAACATAATTTGCCAACCCAGT 59.354 39.130 0.00 0.00 0.00 4.00
6209 6657 7.094975 TGGTTTAAGGAAATTGTCATACTCACG 60.095 37.037 0.00 0.00 0.00 4.35
6226 6674 2.873133 TTTGCCGTGTTGGTTTAAGG 57.127 45.000 0.00 0.00 41.21 2.69
6232 6680 0.673437 CTTGGATTTGCCGTGTTGGT 59.327 50.000 0.00 0.00 41.21 3.67
6234 6682 2.791383 TTCTTGGATTTGCCGTGTTG 57.209 45.000 0.00 0.00 40.66 3.33
6273 6722 0.406361 TCCCCGGTTGGCAAATAGTT 59.594 50.000 0.00 0.00 0.00 2.24
6287 6736 1.273327 ACACGTAAGGTTAACTCCCCG 59.727 52.381 5.42 6.20 46.39 5.73
6288 6737 2.299867 TCACACGTAAGGTTAACTCCCC 59.700 50.000 5.42 0.00 46.39 4.81
6292 6741 4.122046 GGTTGTCACACGTAAGGTTAACT 58.878 43.478 5.42 0.00 46.39 2.24
6297 6746 2.037144 AGAGGTTGTCACACGTAAGGT 58.963 47.619 0.00 0.00 46.39 3.50
6298 6747 2.814280 AGAGGTTGTCACACGTAAGG 57.186 50.000 0.00 0.00 46.39 2.69
6299 6748 5.379304 GCCTTAGAGGTTGTCACACGTAAG 61.379 50.000 0.00 0.00 37.80 2.34
6302 6751 1.270147 GCCTTAGAGGTTGTCACACGT 60.270 52.381 0.00 0.00 37.80 4.49
6304 6753 2.417719 CTGCCTTAGAGGTTGTCACAC 58.582 52.381 0.00 0.00 37.80 3.82
6305 6754 1.270839 GCTGCCTTAGAGGTTGTCACA 60.271 52.381 0.00 0.00 37.80 3.58
6306 6755 1.443802 GCTGCCTTAGAGGTTGTCAC 58.556 55.000 0.00 0.00 37.80 3.67
6307 6756 0.324943 GGCTGCCTTAGAGGTTGTCA 59.675 55.000 12.43 0.00 37.80 3.58
6308 6757 0.615850 AGGCTGCCTTAGAGGTTGTC 59.384 55.000 17.22 0.00 37.80 3.18
6309 6758 1.068121 AAGGCTGCCTTAGAGGTTGT 58.932 50.000 31.49 4.90 42.74 3.32
6310 6759 3.965888 AAGGCTGCCTTAGAGGTTG 57.034 52.632 31.49 0.00 42.74 3.77
6330 6907 0.458260 AAAGGTGTTCGGTTTGTGCC 59.542 50.000 0.00 0.00 0.00 5.01
6340 6917 6.431198 TTGGATTTCGCTATAAAGGTGTTC 57.569 37.500 0.00 0.00 0.00 3.18
6360 6937 8.940768 TTTCTTTTTAACATTTCTGTCCTTGG 57.059 30.769 0.00 0.00 33.36 3.61
6449 7028 8.673711 CGTTCCAAAATAGATGATCCAACTTTA 58.326 33.333 0.00 0.00 0.00 1.85
6450 7029 7.362920 CCGTTCCAAAATAGATGATCCAACTTT 60.363 37.037 0.00 0.00 0.00 2.66
6451 7030 6.095440 CCGTTCCAAAATAGATGATCCAACTT 59.905 38.462 0.00 0.00 0.00 2.66
6452 7031 5.590259 CCGTTCCAAAATAGATGATCCAACT 59.410 40.000 0.00 0.00 0.00 3.16
6453 7032 5.588648 TCCGTTCCAAAATAGATGATCCAAC 59.411 40.000 0.00 0.00 0.00 3.77
6454 7033 5.750524 TCCGTTCCAAAATAGATGATCCAA 58.249 37.500 0.00 0.00 0.00 3.53
6455 7034 5.366482 TCCGTTCCAAAATAGATGATCCA 57.634 39.130 0.00 0.00 0.00 3.41
6456 7035 4.757149 CCTCCGTTCCAAAATAGATGATCC 59.243 45.833 0.00 0.00 0.00 3.36
6457 7036 4.757149 CCCTCCGTTCCAAAATAGATGATC 59.243 45.833 0.00 0.00 0.00 2.92
6458 7037 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
6459 7038 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6460 7039 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6461 7040 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6462 7041 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6463 7042 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6464 7043 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
6465 7044 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
6466 7045 4.376225 AAATACTCCCTCCGTTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
6467 7046 4.376225 AAAATACTCCCTCCGTTCCAAA 57.624 40.909 0.00 0.00 0.00 3.28
6468 7047 4.376225 AAAAATACTCCCTCCGTTCCAA 57.624 40.909 0.00 0.00 0.00 3.53
6491 7070 0.391228 TGTCACTTGGTTGCGCTAGA 59.609 50.000 9.73 0.00 0.00 2.43
6492 7071 1.442769 ATGTCACTTGGTTGCGCTAG 58.557 50.000 9.73 0.63 0.00 3.42
6496 7075 3.913763 CACATTTATGTCACTTGGTTGCG 59.086 43.478 0.00 0.00 39.39 4.85
6510 7089 5.611374 CCGTCTGAAGGGATACACATTTAT 58.389 41.667 1.28 0.00 39.74 1.40
6531 7116 1.068127 GCACACCCTATGTACTACCCG 59.932 57.143 0.00 0.00 40.64 5.28
6562 7147 9.764363 ATATTAAATTAGTCAGAATCAGCGACA 57.236 29.630 0.00 0.00 31.92 4.35
6648 7319 2.937469 TGCCGGACATAAAAAGCATG 57.063 45.000 5.05 0.00 0.00 4.06
6649 7320 2.481795 GCATGCCGGACATAAAAAGCAT 60.482 45.455 5.05 0.00 41.40 3.79
6663 7334 0.110688 CATATTCCGTTCGCATGCCG 60.111 55.000 13.15 10.07 38.61 5.69
6665 7336 3.431912 TGTATCATATTCCGTTCGCATGC 59.568 43.478 7.91 7.91 0.00 4.06
6666 7337 5.177511 ACTTGTATCATATTCCGTTCGCATG 59.822 40.000 0.00 0.00 0.00 4.06
6667 7338 5.297547 ACTTGTATCATATTCCGTTCGCAT 58.702 37.500 0.00 0.00 0.00 4.73
6668 7339 4.689071 ACTTGTATCATATTCCGTTCGCA 58.311 39.130 0.00 0.00 0.00 5.10
6669 7340 5.688621 TGTACTTGTATCATATTCCGTTCGC 59.311 40.000 0.00 0.00 0.00 4.70
6670 7341 7.381408 ACATGTACTTGTATCATATTCCGTTCG 59.619 37.037 12.39 0.00 0.00 3.95
6673 7344 8.958119 AAACATGTACTTGTATCATATTCCGT 57.042 30.769 14.18 0.00 0.00 4.69
6695 7366 9.712359 ATTCGTACTCAAACAAAGTTTCTAAAC 57.288 29.630 0.00 0.00 39.17 2.01
6714 7385 9.512435 GGTACATGTATCATATACCATTCGTAC 57.488 37.037 11.38 0.00 36.18 3.67
6723 7394 5.107133 GTGCCGGGTACATGTATCATATAC 58.893 45.833 17.73 7.57 0.00 1.47
6755 7426 5.499139 TTTTCATCAAACTCAGTCACACC 57.501 39.130 0.00 0.00 0.00 4.16
6797 7468 7.827236 ACATTTTGTTCCGGAGATAGTATTTGA 59.173 33.333 3.34 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.