Multiple sequence alignment - TraesCS7D01G380600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G380600 chr7D 100.000 5058 0 0 1 5058 493566624 493561567 0.000000e+00 9341
1 TraesCS7D01G380600 chr7D 82.973 370 43 13 4708 5058 493205072 493204704 2.940000e-82 316
2 TraesCS7D01G380600 chr7D 80.340 412 46 21 4668 5058 491871956 491872353 3.860000e-71 279
3 TraesCS7D01G380600 chr7B 93.679 2389 102 21 2132 4508 522145888 522143537 0.000000e+00 3530
4 TraesCS7D01G380600 chr7B 90.925 1697 108 14 460 2134 522147614 522145942 0.000000e+00 2239
5 TraesCS7D01G380600 chr7B 87.406 397 32 9 4669 5056 522143479 522143092 1.670000e-119 440
6 TraesCS7D01G380600 chr7B 82.071 396 49 14 4683 5058 521149211 521149604 8.170000e-83 318
7 TraesCS7D01G380600 chr7B 80.000 415 57 17 4668 5058 521195809 521196221 2.980000e-72 283
8 TraesCS7D01G380600 chr7B 93.373 166 9 2 1 164 522148202 522148037 1.410000e-60 244
9 TraesCS7D01G380600 chr7B 93.137 102 6 1 257 358 553654378 553654478 1.130000e-31 148
10 TraesCS7D01G380600 chr7B 87.387 111 8 1 357 461 522147809 522147699 6.880000e-24 122
11 TraesCS7D01G380600 chr7A 92.651 2395 109 30 2132 4508 559390916 559388571 0.000000e+00 3386
12 TraesCS7D01G380600 chr7A 91.458 1358 64 11 764 2101 559392313 559390988 0.000000e+00 1818
13 TraesCS7D01G380600 chr7A 84.367 371 37 13 4708 5058 559363170 559362801 1.350000e-90 344
14 TraesCS7D01G380600 chr7A 80.435 414 55 17 4668 5058 558108502 558108912 4.950000e-75 292
15 TraesCS7D01G380600 chr7A 91.878 197 16 0 4862 5058 559388364 559388168 4.990000e-70 276
16 TraesCS7D01G380600 chr4D 93.137 102 6 1 259 359 109074975 109074874 1.130000e-31 148
17 TraesCS7D01G380600 chr2A 92.929 99 7 0 262 360 186403679 186403777 1.470000e-30 145
18 TraesCS7D01G380600 chr6B 92.784 97 7 0 262 358 402692922 402693018 1.900000e-29 141
19 TraesCS7D01G380600 chr5D 92.784 97 7 0 262 358 1692952 1693048 1.900000e-29 141
20 TraesCS7D01G380600 chr3D 92.784 97 7 0 262 358 22331253 22331349 1.900000e-29 141
21 TraesCS7D01G380600 chr3D 92.784 97 7 0 262 358 382104831 382104927 1.900000e-29 141
22 TraesCS7D01G380600 chr1A 92.784 97 7 0 262 358 561333698 561333794 1.900000e-29 141
23 TraesCS7D01G380600 chr6A 92.708 96 7 0 268 363 484491 484396 6.830000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G380600 chr7D 493561567 493566624 5057 True 9341.000000 9341 100.000000 1 5058 1 chr7D.!!$R2 5057
1 TraesCS7D01G380600 chr7B 522143092 522148202 5110 True 1315.000000 3530 90.554000 1 5056 5 chr7B.!!$R1 5055
2 TraesCS7D01G380600 chr7A 559388168 559392313 4145 True 1826.666667 3386 91.995667 764 5058 3 chr7A.!!$R2 4294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 172 0.185416 TTTGCCAACCGGGGAGTTAA 59.815 50.0 6.32 0.0 38.72 2.01 F
1488 1742 0.254747 ATACCCATTCCCACACACCG 59.745 55.0 0.00 0.0 0.00 4.94 F
1703 1958 0.178990 GCCTGAGGAAAACCCACTGT 60.179 55.0 0.65 0.0 37.41 3.55 F
3337 3656 0.249826 GCTAGATCACTGCCAGAGCC 60.250 60.0 0.00 0.0 38.69 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1683 1938 1.073199 AGTGGGTTTTCCTCAGGCG 59.927 57.895 0.00 0.0 40.46 5.52 R
3364 3683 2.159170 GCAGTACAGAGGCTACTGAAGG 60.159 54.545 17.19 7.1 42.58 3.46 R
3596 3915 0.681887 TCCTCCAATCACCGCGAGTA 60.682 55.000 8.23 0.0 0.00 2.59 R
4831 5189 0.109365 CGGCGGCAACATGATTTGAA 60.109 50.000 10.53 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 8.141268 GGGAACAGAAATGTTAAAATCTGACAA 58.859 33.333 8.48 0.00 41.38 3.18
77 78 4.270245 ACAACTGGGTTGGCAAATTATG 57.730 40.909 0.00 0.00 46.50 1.90
82 83 4.244862 CTGGGTTGGCAAATTATGTTGTC 58.755 43.478 0.00 0.00 33.59 3.18
105 106 7.658167 TGTCGTGAGTATGACAATTTCCTTAAA 59.342 33.333 0.18 0.00 46.83 1.52
107 108 7.118680 TCGTGAGTATGACAATTTCCTTAAACC 59.881 37.037 0.00 0.00 0.00 3.27
160 162 8.067784 GCTTAAAAAGAAAACTATTTGCCAACC 58.932 33.333 0.00 0.00 0.00 3.77
161 163 6.597262 AAAAAGAAAACTATTTGCCAACCG 57.403 33.333 0.00 0.00 0.00 4.44
165 167 0.406361 AACTATTTGCCAACCGGGGA 59.594 50.000 6.32 0.00 37.04 4.81
170 172 0.185416 TTTGCCAACCGGGGAGTTAA 59.815 50.000 6.32 0.00 38.72 2.01
171 173 0.537828 TTGCCAACCGGGGAGTTAAC 60.538 55.000 6.32 0.00 38.72 2.01
172 174 1.676635 GCCAACCGGGGAGTTAACC 60.677 63.158 6.32 0.00 37.04 2.85
175 177 1.629861 CCAACCGGGGAGTTAACCTTA 59.370 52.381 6.32 0.00 0.00 2.69
177 179 0.897621 ACCGGGGAGTTAACCTTACG 59.102 55.000 6.32 2.86 0.00 3.18
178 180 0.897621 CCGGGGAGTTAACCTTACGT 59.102 55.000 0.88 0.00 0.00 3.57
179 181 1.404583 CCGGGGAGTTAACCTTACGTG 60.405 57.143 0.88 0.00 0.00 4.49
180 182 1.273327 CGGGGAGTTAACCTTACGTGT 59.727 52.381 0.88 0.00 0.00 4.49
181 183 2.691927 GGGGAGTTAACCTTACGTGTG 58.308 52.381 0.88 0.00 0.00 3.82
182 184 2.299867 GGGGAGTTAACCTTACGTGTGA 59.700 50.000 0.88 0.00 0.00 3.58
183 185 3.320626 GGGAGTTAACCTTACGTGTGAC 58.679 50.000 0.88 0.00 0.00 3.67
186 188 4.209911 GGAGTTAACCTTACGTGTGACAAC 59.790 45.833 0.88 0.00 0.00 3.32
187 189 4.122046 AGTTAACCTTACGTGTGACAACC 58.878 43.478 0.88 0.00 0.00 3.77
188 190 2.994186 AACCTTACGTGTGACAACCT 57.006 45.000 0.00 0.00 0.00 3.50
189 191 2.521105 ACCTTACGTGTGACAACCTC 57.479 50.000 0.00 0.00 0.00 3.85
191 193 3.225104 ACCTTACGTGTGACAACCTCTA 58.775 45.455 0.00 0.00 0.00 2.43
192 194 3.638160 ACCTTACGTGTGACAACCTCTAA 59.362 43.478 0.00 0.00 0.00 2.10
193 195 4.235360 CCTTACGTGTGACAACCTCTAAG 58.765 47.826 0.00 0.00 0.00 2.18
194 196 2.814280 ACGTGTGACAACCTCTAAGG 57.186 50.000 0.00 0.00 42.49 2.69
197 327 2.417719 GTGTGACAACCTCTAAGGCAG 58.582 52.381 0.00 0.00 39.63 4.85
233 363 4.569564 ACCGAACACCTTTATAGCGAAATC 59.430 41.667 0.00 0.00 0.00 2.17
238 370 4.881850 ACACCTTTATAGCGAAATCCAAGG 59.118 41.667 0.00 0.00 36.23 3.61
242 374 5.237344 CCTTTATAGCGAAATCCAAGGACAG 59.763 44.000 0.00 0.00 32.51 3.51
247 379 3.441572 AGCGAAATCCAAGGACAGAAATG 59.558 43.478 0.00 0.00 0.00 2.32
251 383 6.569610 GCGAAATCCAAGGACAGAAATGTTAA 60.570 38.462 0.00 0.00 0.00 2.01
255 387 9.546428 AAATCCAAGGACAGAAATGTTAAAAAG 57.454 29.630 0.00 0.00 0.00 2.27
256 388 7.889873 TCCAAGGACAGAAATGTTAAAAAGA 57.110 32.000 0.00 0.00 0.00 2.52
257 389 8.299990 TCCAAGGACAGAAATGTTAAAAAGAA 57.700 30.769 0.00 0.00 0.00 2.52
348 480 6.683974 AGTTGGATCATCTATTTTGGAACG 57.316 37.500 0.00 0.00 0.00 3.95
349 481 5.590259 AGTTGGATCATCTATTTTGGAACGG 59.410 40.000 0.00 0.00 0.00 4.44
350 482 5.366482 TGGATCATCTATTTTGGAACGGA 57.634 39.130 0.00 0.00 0.00 4.69
351 483 5.368145 TGGATCATCTATTTTGGAACGGAG 58.632 41.667 0.00 0.00 0.00 4.63
352 484 4.757149 GGATCATCTATTTTGGAACGGAGG 59.243 45.833 0.00 0.00 0.00 4.30
353 485 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
354 486 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
355 487 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
383 515 0.391228 TCTAGCGCAACCAAGTGACA 59.609 50.000 11.47 0.00 0.00 3.58
404 542 7.011482 GTGACATAAATGTGTATCCCTTCAGAC 59.989 40.741 0.00 0.00 41.95 3.51
456 594 8.492673 TTTATGTCGCTGATTCTGACTAATTT 57.507 30.769 0.00 0.00 33.81 1.82
521 745 7.977853 ACTTTGCTTGAATATGAATCCAATGAC 59.022 33.333 0.00 0.00 0.00 3.06
522 746 7.407393 TTGCTTGAATATGAATCCAATGACA 57.593 32.000 0.00 0.00 0.00 3.58
534 758 7.613585 TGAATCCAATGACATGCTTTTTATGT 58.386 30.769 0.00 0.00 41.21 2.29
539 763 2.797491 GACATGCTTTTTATGTCCGGC 58.203 47.619 0.00 0.00 45.40 6.13
540 764 2.163412 GACATGCTTTTTATGTCCGGCA 59.837 45.455 0.00 0.00 45.40 5.69
541 765 2.760092 ACATGCTTTTTATGTCCGGCAT 59.240 40.909 14.43 14.43 40.38 4.40
542 766 2.937469 TGCTTTTTATGTCCGGCATG 57.063 45.000 18.08 5.54 38.47 4.06
543 767 1.135141 TGCTTTTTATGTCCGGCATGC 60.135 47.619 9.90 9.90 38.47 4.06
546 770 1.454201 TTTTATGTCCGGCATGCGAA 58.546 45.000 12.44 9.52 38.47 4.70
547 771 0.730265 TTTATGTCCGGCATGCGAAC 59.270 50.000 12.44 10.01 38.47 3.95
560 784 3.431912 GCATGCGAACGGAATATGATACA 59.568 43.478 0.00 0.00 0.00 2.29
568 792 7.619366 GCGAACGGAATATGATACAAGTACATG 60.619 40.741 0.00 0.00 0.00 3.21
596 820 6.725246 AGAAACTTTGTTTGAGTACGAATGG 58.275 36.000 0.10 0.00 0.00 3.16
711 935 9.758651 GGAACAAAATGTAAGACCTTTTTATGT 57.241 29.630 0.00 0.00 0.00 2.29
720 946 7.885922 TGTAAGACCTTTTTATGTCCTATGCAA 59.114 33.333 0.00 0.00 31.76 4.08
724 950 8.470002 AGACCTTTTTATGTCCTATGCAAAATC 58.530 33.333 0.00 0.00 31.76 2.17
727 953 9.434420 CCTTTTTATGTCCTATGCAAAATCAAA 57.566 29.630 0.00 0.00 0.00 2.69
741 967 8.630278 TGCAAAATCAAAAATTTGGTCAAATG 57.370 26.923 9.37 0.14 40.57 2.32
744 970 9.235537 CAAAATCAAAAATTTGGTCAAATGGAC 57.764 29.630 9.37 0.00 46.20 4.02
860 1104 4.630894 AAGACTGCACAAAACGAAATCA 57.369 36.364 0.00 0.00 0.00 2.57
972 1218 1.293498 GGCACAGATCACCACTCGT 59.707 57.895 0.00 0.00 0.00 4.18
1125 1377 2.663196 GTGGTGAAGGGGAGGTCG 59.337 66.667 0.00 0.00 0.00 4.79
1323 1576 1.281287 GGGTTCCCCTGTTCCTAGTTC 59.719 57.143 0.00 0.00 41.34 3.01
1338 1591 1.396653 AGTTCAGCCATTAGCCATGC 58.603 50.000 0.00 0.00 45.47 4.06
1488 1742 0.254747 ATACCCATTCCCACACACCG 59.745 55.000 0.00 0.00 0.00 4.94
1497 1751 3.339547 CCACACACCGGGAAGAAAT 57.660 52.632 6.32 0.00 0.00 2.17
1525 1779 4.392047 TGATTGCAACTCATGTCTTCAGT 58.608 39.130 0.00 0.00 0.00 3.41
1548 1802 4.152045 TGGAATTCGACAAAATTGCAATGC 59.848 37.500 13.82 0.00 41.92 3.56
1589 1843 4.980573 TGGAAACTAAGCTGTATTGTGGT 58.019 39.130 0.00 0.00 0.00 4.16
1617 1871 3.517296 TTCCCCATTCTGTTAGTTGCA 57.483 42.857 0.00 0.00 0.00 4.08
1622 1876 4.201910 CCCCATTCTGTTAGTTGCATAACG 60.202 45.833 5.89 2.23 41.71 3.18
1626 1880 4.794278 TCTGTTAGTTGCATAACGGAGA 57.206 40.909 14.88 6.82 43.06 3.71
1666 1920 4.920927 CCGTACAATGGGAAAACATGAAAC 59.079 41.667 0.00 0.00 0.00 2.78
1683 1938 3.423154 CGGGAAACAGCTCGGCAC 61.423 66.667 0.00 0.00 0.00 5.01
1703 1958 0.178990 GCCTGAGGAAAACCCACTGT 60.179 55.000 0.65 0.00 37.41 3.55
1715 1970 4.335647 CACTGTCCGCCCCTGCTT 62.336 66.667 0.00 0.00 34.43 3.91
1761 2016 1.134098 CAAATCCTAGCACCATCCCGT 60.134 52.381 0.00 0.00 0.00 5.28
1779 2034 6.249035 TCCCGTCAAACATTCAAAGTTATC 57.751 37.500 0.00 0.00 0.00 1.75
1796 2051 4.649674 AGTTATCACATCCCATACTGACGT 59.350 41.667 0.00 0.00 0.00 4.34
1819 2074 3.996150 AACATCAGTGCCACAAAAGAG 57.004 42.857 0.00 0.00 0.00 2.85
1899 2154 8.467598 TGTAAAAGTATTCTCTACTACTGCCAG 58.532 37.037 0.00 0.00 0.00 4.85
1993 2248 6.441274 ACAAGAAAGTCACTGCATTTATGTG 58.559 36.000 0.00 0.00 0.00 3.21
1995 2250 7.040201 ACAAGAAAGTCACTGCATTTATGTGAT 60.040 33.333 8.74 0.00 41.78 3.06
1996 2251 7.458409 AGAAAGTCACTGCATTTATGTGATT 57.542 32.000 8.74 2.60 41.78 2.57
1997 2252 8.565896 AGAAAGTCACTGCATTTATGTGATTA 57.434 30.769 8.74 0.00 41.78 1.75
1998 2253 9.182214 AGAAAGTCACTGCATTTATGTGATTAT 57.818 29.630 8.74 0.00 41.78 1.28
1999 2254 9.229784 GAAAGTCACTGCATTTATGTGATTATG 57.770 33.333 8.74 0.00 41.78 1.90
2000 2255 7.870509 AGTCACTGCATTTATGTGATTATGT 57.129 32.000 8.74 0.00 41.78 2.29
2001 2256 7.923888 AGTCACTGCATTTATGTGATTATGTC 58.076 34.615 8.74 0.00 41.78 3.06
2002 2257 7.553760 AGTCACTGCATTTATGTGATTATGTCA 59.446 33.333 8.74 0.00 41.78 3.58
2077 2332 0.521735 GGAACCGCACAAGGACAATC 59.478 55.000 0.00 0.00 34.73 2.67
2098 2353 5.050126 TCGAGTGTATGAGATTAGGTCCT 57.950 43.478 0.00 0.00 0.00 3.85
2120 2375 5.220989 CCTCATTATGTGACTGCAAAGATGG 60.221 44.000 0.00 0.00 32.22 3.51
2183 2494 8.793592 AGGTTCACCAATAAACTCTTGTATTTC 58.206 33.333 0.00 0.00 38.89 2.17
2263 2575 9.265901 ACGATCCATTCTATAACTTTGAGATTG 57.734 33.333 0.00 0.00 0.00 2.67
2402 2714 9.959721 AATAGCTGACTTAAATTCCTGACTTAA 57.040 29.630 0.00 0.00 0.00 1.85
2449 2761 7.600752 TCTTAACTTTTGGGTTGACTTGTTTTG 59.399 33.333 0.00 0.00 0.00 2.44
2456 2768 5.205056 TGGGTTGACTTGTTTTGTCCTATT 58.795 37.500 0.00 0.00 33.83 1.73
2457 2769 5.300792 TGGGTTGACTTGTTTTGTCCTATTC 59.699 40.000 0.00 0.00 33.83 1.75
2461 2773 5.070001 TGACTTGTTTTGTCCTATTCTGGG 58.930 41.667 0.00 0.00 33.83 4.45
2463 2775 4.827284 ACTTGTTTTGTCCTATTCTGGGTG 59.173 41.667 0.00 0.00 0.00 4.61
2793 3107 9.991906 TCTGTTTATGGTTTATACTGTATAGGC 57.008 33.333 7.52 5.28 0.00 3.93
2986 3301 6.936900 CCTTCTTTTCTCAATCACAGTAGGAA 59.063 38.462 0.00 0.00 0.00 3.36
3336 3655 0.463204 TGCTAGATCACTGCCAGAGC 59.537 55.000 0.00 0.00 40.48 4.09
3337 3656 0.249826 GCTAGATCACTGCCAGAGCC 60.250 60.000 0.00 0.00 38.69 4.70
3338 3657 0.392336 CTAGATCACTGCCAGAGCCC 59.608 60.000 0.00 0.00 38.69 5.19
3339 3658 0.325577 TAGATCACTGCCAGAGCCCA 60.326 55.000 0.00 0.00 38.69 5.36
3340 3659 1.153208 GATCACTGCCAGAGCCCAG 60.153 63.158 0.00 0.00 38.69 4.45
3341 3660 1.614525 ATCACTGCCAGAGCCCAGA 60.615 57.895 0.00 0.00 38.69 3.86
3342 3661 1.624479 ATCACTGCCAGAGCCCAGAG 61.624 60.000 0.00 0.00 38.69 3.35
3350 3669 0.615331 CAGAGCCCAGAGGTGCTTAA 59.385 55.000 0.00 0.00 38.11 1.85
3364 3683 4.275936 AGGTGCTTAACATGTCACACTTTC 59.724 41.667 15.04 0.82 0.00 2.62
3435 3754 5.452077 GGTCTCACCTGTTACTTATAGCCTG 60.452 48.000 0.00 0.00 34.73 4.85
3651 3971 3.883830 AGTCTGCATTCTGAGTCGAAT 57.116 42.857 0.00 0.00 34.07 3.34
3897 4227 3.003394 TCGAGTCCATGGATTTGCATT 57.997 42.857 19.62 0.00 0.00 3.56
3955 4285 2.950309 CAGATTTCAGAGGAATGCTGGG 59.050 50.000 0.00 0.00 33.97 4.45
4015 4345 2.696707 TGGGACTTACGTCAAAGACACT 59.303 45.455 5.10 0.00 42.05 3.55
4062 4392 1.268625 CAAGCGTCCCAAGTAAAACCC 59.731 52.381 0.00 0.00 0.00 4.11
4132 4462 5.427157 TGGGAGCATGTAACCTATTACTTCA 59.573 40.000 0.00 0.00 41.24 3.02
4135 4465 5.930135 AGCATGTAACCTATTACTTCAGGG 58.070 41.667 0.00 0.00 41.24 4.45
4142 4472 5.216665 ACCTATTACTTCAGGGGACACTA 57.783 43.478 0.00 0.00 36.15 2.74
4190 4520 1.821332 GGCTCTGGCTGGGATTTCG 60.821 63.158 0.00 0.00 38.73 3.46
4239 4572 2.061028 GCTGTTGTATGCCTGTTTTGC 58.939 47.619 0.00 0.00 0.00 3.68
4243 4576 3.636300 TGTTGTATGCCTGTTTTGCTTCT 59.364 39.130 0.00 0.00 0.00 2.85
4248 4581 3.829886 TGCCTGTTTTGCTTCTTATCG 57.170 42.857 0.00 0.00 0.00 2.92
4251 4584 3.058224 GCCTGTTTTGCTTCTTATCGTGT 60.058 43.478 0.00 0.00 0.00 4.49
4258 4595 5.607119 TTGCTTCTTATCGTGTTTCCTTC 57.393 39.130 0.00 0.00 0.00 3.46
4272 4609 0.920438 TCCTTCGGTAGAGCCTCTCT 59.080 55.000 0.00 0.24 43.83 3.10
4292 4629 1.593265 CTCCCCAACTTGCAATGCC 59.407 57.895 1.53 0.00 0.00 4.40
4326 4663 3.003394 TGGTTCCTCCAGCAATGTATG 57.997 47.619 0.00 0.00 41.93 2.39
4349 4686 6.629128 TGGGATGCAATGTAACAAAACTATG 58.371 36.000 0.00 0.00 0.00 2.23
4504 4841 7.871853 TCTTATTTGCAGTAGTCAGAAAAACC 58.128 34.615 0.00 0.00 0.00 3.27
4508 4845 2.155155 GCAGTAGTCAGAAAAACCGTCG 59.845 50.000 0.00 0.00 0.00 5.12
4509 4846 3.635331 CAGTAGTCAGAAAAACCGTCGA 58.365 45.455 0.00 0.00 0.00 4.20
4510 4847 4.235360 CAGTAGTCAGAAAAACCGTCGAT 58.765 43.478 0.00 0.00 0.00 3.59
4511 4848 4.684703 CAGTAGTCAGAAAAACCGTCGATT 59.315 41.667 0.00 0.00 0.00 3.34
4512 4849 5.176958 CAGTAGTCAGAAAAACCGTCGATTT 59.823 40.000 0.00 0.00 0.00 2.17
4514 4851 3.875134 AGTCAGAAAAACCGTCGATTTGT 59.125 39.130 0.00 0.00 0.00 2.83
4515 4852 4.334481 AGTCAGAAAAACCGTCGATTTGTT 59.666 37.500 0.00 0.00 0.00 2.83
4516 4853 4.436523 GTCAGAAAAACCGTCGATTTGTTG 59.563 41.667 0.00 0.00 0.00 3.33
4517 4854 4.095185 TCAGAAAAACCGTCGATTTGTTGT 59.905 37.500 0.00 0.00 0.00 3.32
4521 4858 4.625972 AAACCGTCGATTTGTTGTTTCT 57.374 36.364 0.00 0.00 0.00 2.52
4523 4860 5.738118 AACCGTCGATTTGTTGTTTCTTA 57.262 34.783 0.00 0.00 0.00 2.10
4524 4861 5.086888 ACCGTCGATTTGTTGTTTCTTAC 57.913 39.130 0.00 0.00 0.00 2.34
4525 4862 4.812626 ACCGTCGATTTGTTGTTTCTTACT 59.187 37.500 0.00 0.00 0.00 2.24
4526 4863 5.295045 ACCGTCGATTTGTTGTTTCTTACTT 59.705 36.000 0.00 0.00 0.00 2.24
4527 4864 5.844396 CCGTCGATTTGTTGTTTCTTACTTC 59.156 40.000 0.00 0.00 0.00 3.01
4528 4865 5.844396 CGTCGATTTGTTGTTTCTTACTTCC 59.156 40.000 0.00 0.00 0.00 3.46
4529 4866 6.292703 CGTCGATTTGTTGTTTCTTACTTCCT 60.293 38.462 0.00 0.00 0.00 3.36
4530 4867 6.851330 GTCGATTTGTTGTTTCTTACTTCCTG 59.149 38.462 0.00 0.00 0.00 3.86
4531 4868 6.017440 TCGATTTGTTGTTTCTTACTTCCTGG 60.017 38.462 0.00 0.00 0.00 4.45
4532 4869 4.911514 TTGTTGTTTCTTACTTCCTGGC 57.088 40.909 0.00 0.00 0.00 4.85
4533 4870 3.892284 TGTTGTTTCTTACTTCCTGGCA 58.108 40.909 0.00 0.00 0.00 4.92
4534 4871 4.469657 TGTTGTTTCTTACTTCCTGGCAT 58.530 39.130 0.00 0.00 0.00 4.40
4535 4872 4.278170 TGTTGTTTCTTACTTCCTGGCATG 59.722 41.667 0.00 0.00 0.00 4.06
4536 4873 2.819608 TGTTTCTTACTTCCTGGCATGC 59.180 45.455 9.90 9.90 0.00 4.06
4537 4874 2.128771 TTCTTACTTCCTGGCATGCC 57.871 50.000 30.54 30.54 0.00 4.40
4538 4875 0.107703 TCTTACTTCCTGGCATGCCG 60.108 55.000 30.87 23.82 39.42 5.69
4539 4876 1.077787 TTACTTCCTGGCATGCCGG 60.078 57.895 34.88 34.88 42.03 6.13
4540 4877 3.697439 TACTTCCTGGCATGCCGGC 62.697 63.158 36.15 22.73 41.06 6.13
4552 4889 4.221422 GCCGGCGTGCTCCTCATA 62.221 66.667 12.58 0.00 0.00 2.15
4553 4890 2.737180 CCGGCGTGCTCCTCATAT 59.263 61.111 6.01 0.00 0.00 1.78
4554 4891 1.069765 CCGGCGTGCTCCTCATATT 59.930 57.895 6.01 0.00 0.00 1.28
4555 4892 0.317160 CCGGCGTGCTCCTCATATTA 59.683 55.000 6.01 0.00 0.00 0.98
4556 4893 1.419374 CGGCGTGCTCCTCATATTAC 58.581 55.000 0.00 0.00 0.00 1.89
4557 4894 1.000163 CGGCGTGCTCCTCATATTACT 60.000 52.381 0.00 0.00 0.00 2.24
4558 4895 2.408050 GGCGTGCTCCTCATATTACTG 58.592 52.381 0.00 0.00 0.00 2.74
4559 4896 2.408050 GCGTGCTCCTCATATTACTGG 58.592 52.381 0.00 0.00 0.00 4.00
4560 4897 2.035961 GCGTGCTCCTCATATTACTGGA 59.964 50.000 0.00 0.00 0.00 3.86
4561 4898 3.492656 GCGTGCTCCTCATATTACTGGAA 60.493 47.826 0.00 0.00 0.00 3.53
4562 4899 4.051922 CGTGCTCCTCATATTACTGGAAC 58.948 47.826 0.00 0.00 0.00 3.62
4563 4900 4.381411 GTGCTCCTCATATTACTGGAACC 58.619 47.826 0.00 0.00 0.00 3.62
4564 4901 4.037222 TGCTCCTCATATTACTGGAACCA 58.963 43.478 0.00 0.00 0.00 3.67
4565 4902 4.660303 TGCTCCTCATATTACTGGAACCAT 59.340 41.667 0.00 0.00 0.00 3.55
4566 4903 5.132648 TGCTCCTCATATTACTGGAACCATT 59.867 40.000 0.00 0.00 0.00 3.16
4567 4904 5.471456 GCTCCTCATATTACTGGAACCATTG 59.529 44.000 0.00 0.00 0.00 2.82
4568 4905 6.575244 TCCTCATATTACTGGAACCATTGT 57.425 37.500 0.00 0.00 0.00 2.71
4569 4906 6.356556 TCCTCATATTACTGGAACCATTGTG 58.643 40.000 0.00 0.00 0.00 3.33
4570 4907 6.069673 TCCTCATATTACTGGAACCATTGTGT 60.070 38.462 0.00 0.00 0.00 3.72
4571 4908 7.126573 TCCTCATATTACTGGAACCATTGTGTA 59.873 37.037 0.00 0.00 0.00 2.90
4572 4909 7.773224 CCTCATATTACTGGAACCATTGTGTAA 59.227 37.037 6.09 6.09 0.00 2.41
4573 4910 9.173021 CTCATATTACTGGAACCATTGTGTAAA 57.827 33.333 7.24 0.96 0.00 2.01
4574 4911 9.693739 TCATATTACTGGAACCATTGTGTAAAT 57.306 29.630 7.24 0.00 0.00 1.40
4575 4912 9.950680 CATATTACTGGAACCATTGTGTAAATC 57.049 33.333 7.24 0.00 0.00 2.17
4576 4913 9.693739 ATATTACTGGAACCATTGTGTAAATCA 57.306 29.630 7.24 0.00 0.00 2.57
4577 4914 8.593945 ATTACTGGAACCATTGTGTAAATCAT 57.406 30.769 7.24 0.00 0.00 2.45
4578 4915 9.693739 ATTACTGGAACCATTGTGTAAATCATA 57.306 29.630 7.24 0.00 0.00 2.15
4579 4916 9.693739 TTACTGGAACCATTGTGTAAATCATAT 57.306 29.630 0.00 0.00 0.00 1.78
4581 4918 9.866655 ACTGGAACCATTGTGTAAATCATATAT 57.133 29.630 0.00 0.00 0.00 0.86
4583 4920 9.076781 TGGAACCATTGTGTAAATCATATATGG 57.923 33.333 12.78 0.00 34.95 2.74
4584 4921 9.077885 GGAACCATTGTGTAAATCATATATGGT 57.922 33.333 12.78 2.28 38.82 3.55
4585 4922 9.897744 GAACCATTGTGTAAATCATATATGGTG 57.102 33.333 12.78 0.00 38.11 4.17
4586 4923 8.995027 ACCATTGTGTAAATCATATATGGTGT 57.005 30.769 12.78 3.23 37.49 4.16
4587 4924 8.849168 ACCATTGTGTAAATCATATATGGTGTG 58.151 33.333 12.78 0.00 37.49 3.82
4588 4925 8.849168 CCATTGTGTAAATCATATATGGTGTGT 58.151 33.333 12.78 0.00 0.00 3.72
4589 4926 9.882996 CATTGTGTAAATCATATATGGTGTGTC 57.117 33.333 12.78 0.42 0.00 3.67
4590 4927 9.625747 ATTGTGTAAATCATATATGGTGTGTCA 57.374 29.630 12.78 2.89 0.00 3.58
4591 4928 9.625747 TTGTGTAAATCATATATGGTGTGTCAT 57.374 29.630 12.78 0.00 0.00 3.06
4592 4929 9.271828 TGTGTAAATCATATATGGTGTGTCATC 57.728 33.333 12.78 2.47 0.00 2.92
4593 4930 8.435430 GTGTAAATCATATATGGTGTGTCATCG 58.565 37.037 12.78 0.00 0.00 3.84
4594 4931 8.147704 TGTAAATCATATATGGTGTGTCATCGT 58.852 33.333 12.78 0.00 0.00 3.73
4595 4932 7.658179 AAATCATATATGGTGTGTCATCGTC 57.342 36.000 12.78 0.00 0.00 4.20
4596 4933 5.782893 TCATATATGGTGTGTCATCGTCA 57.217 39.130 12.78 0.00 0.00 4.35
4597 4934 6.345096 TCATATATGGTGTGTCATCGTCAT 57.655 37.500 12.78 0.00 0.00 3.06
4598 4935 7.461182 TCATATATGGTGTGTCATCGTCATA 57.539 36.000 12.78 0.00 0.00 2.15
4599 4936 7.891561 TCATATATGGTGTGTCATCGTCATAA 58.108 34.615 12.78 0.00 0.00 1.90
4600 4937 7.812669 TCATATATGGTGTGTCATCGTCATAAC 59.187 37.037 12.78 0.00 0.00 1.89
4601 4938 3.669251 TGGTGTGTCATCGTCATAACA 57.331 42.857 0.00 0.00 0.00 2.41
4602 4939 3.996480 TGGTGTGTCATCGTCATAACAA 58.004 40.909 0.00 0.00 0.00 2.83
4603 4940 4.574892 TGGTGTGTCATCGTCATAACAAT 58.425 39.130 0.00 0.00 0.00 2.71
4604 4941 4.391523 TGGTGTGTCATCGTCATAACAATG 59.608 41.667 0.00 0.00 0.00 2.82
4605 4942 4.391830 GGTGTGTCATCGTCATAACAATGT 59.608 41.667 0.00 0.00 0.00 2.71
4606 4943 5.445939 GGTGTGTCATCGTCATAACAATGTC 60.446 44.000 0.00 0.00 0.00 3.06
4607 4944 5.120053 GTGTGTCATCGTCATAACAATGTCA 59.880 40.000 0.00 0.00 0.00 3.58
4608 4945 5.874261 TGTGTCATCGTCATAACAATGTCAT 59.126 36.000 0.00 0.00 0.00 3.06
4609 4946 6.035975 TGTGTCATCGTCATAACAATGTCATC 59.964 38.462 0.00 0.00 0.00 2.92
4610 4947 5.231991 TGTCATCGTCATAACAATGTCATCG 59.768 40.000 0.00 0.00 0.00 3.84
4611 4948 5.232202 GTCATCGTCATAACAATGTCATCGT 59.768 40.000 0.00 0.00 0.00 3.73
4612 4949 5.458779 TCATCGTCATAACAATGTCATCGTC 59.541 40.000 0.00 0.00 0.00 4.20
4613 4950 4.739195 TCGTCATAACAATGTCATCGTCA 58.261 39.130 0.00 0.00 0.00 4.35
4614 4951 4.798387 TCGTCATAACAATGTCATCGTCAG 59.202 41.667 0.00 0.00 0.00 3.51
4615 4952 4.026558 CGTCATAACAATGTCATCGTCAGG 60.027 45.833 0.00 0.00 0.00 3.86
4616 4953 4.870426 GTCATAACAATGTCATCGTCAGGT 59.130 41.667 0.00 0.00 0.00 4.00
4617 4954 6.040247 GTCATAACAATGTCATCGTCAGGTA 58.960 40.000 0.00 0.00 0.00 3.08
4618 4955 6.701841 GTCATAACAATGTCATCGTCAGGTAT 59.298 38.462 0.00 0.00 0.00 2.73
4619 4956 7.224753 GTCATAACAATGTCATCGTCAGGTATT 59.775 37.037 0.00 0.00 0.00 1.89
4620 4957 8.417884 TCATAACAATGTCATCGTCAGGTATTA 58.582 33.333 0.00 0.00 0.00 0.98
4621 4958 6.903883 AACAATGTCATCGTCAGGTATTAC 57.096 37.500 0.00 0.00 0.00 1.89
4622 4959 5.357257 ACAATGTCATCGTCAGGTATTACC 58.643 41.667 4.57 4.57 38.99 2.85
4623 4960 3.703286 TGTCATCGTCAGGTATTACCG 57.297 47.619 7.21 3.24 44.90 4.02
4624 4961 3.018856 TGTCATCGTCAGGTATTACCGT 58.981 45.455 7.21 0.00 44.90 4.83
4625 4962 3.444742 TGTCATCGTCAGGTATTACCGTT 59.555 43.478 7.21 0.00 44.90 4.44
4626 4963 3.795101 GTCATCGTCAGGTATTACCGTTG 59.205 47.826 7.21 1.84 44.90 4.10
4627 4964 3.695556 TCATCGTCAGGTATTACCGTTGA 59.304 43.478 7.21 4.19 44.90 3.18
4628 4965 4.340097 TCATCGTCAGGTATTACCGTTGAT 59.660 41.667 7.21 7.05 44.90 2.57
4629 4966 4.724074 TCGTCAGGTATTACCGTTGATT 57.276 40.909 7.21 0.00 44.90 2.57
4630 4967 5.075858 TCGTCAGGTATTACCGTTGATTT 57.924 39.130 7.21 0.00 44.90 2.17
4631 4968 5.481105 TCGTCAGGTATTACCGTTGATTTT 58.519 37.500 7.21 0.00 44.90 1.82
4632 4969 5.933463 TCGTCAGGTATTACCGTTGATTTTT 59.067 36.000 7.21 0.00 44.90 1.94
4654 4991 2.708861 TCTTTCTTGCCCTGGAACTGTA 59.291 45.455 0.00 0.00 0.00 2.74
4664 5001 4.082190 GCCCTGGAACTGTATTTTCCTTTC 60.082 45.833 0.00 0.00 42.79 2.62
4666 5003 5.325239 CCTGGAACTGTATTTTCCTTTCCT 58.675 41.667 2.95 0.00 42.79 3.36
4671 5019 9.020731 TGGAACTGTATTTTCCTTTCCTTTATC 57.979 33.333 2.95 0.00 42.79 1.75
4690 5038 0.462789 CCTGAAGCATCCAAATGGCC 59.537 55.000 0.00 0.00 33.19 5.36
4695 5043 1.587066 AGCATCCAAATGGCCCAATT 58.413 45.000 0.00 0.00 33.19 2.32
4713 5061 4.752101 CCAATTGCCTTCTATACCTCTTCG 59.248 45.833 0.00 0.00 0.00 3.79
4725 5073 8.789825 TCTATACCTCTTCGTATCCTCAATAC 57.210 38.462 0.00 0.00 37.47 1.89
4726 5074 8.604184 TCTATACCTCTTCGTATCCTCAATACT 58.396 37.037 0.00 0.00 38.50 2.12
4758 5107 1.271379 AGTCGTGTGAGCCATTCGTAA 59.729 47.619 0.00 0.00 0.00 3.18
4768 5120 4.622701 AGCCATTCGTAAAGCTCATTTC 57.377 40.909 0.00 0.00 32.01 2.17
4783 5135 7.380423 AGCTCATTTCTGGGTACAAGTATAT 57.620 36.000 0.00 0.00 0.00 0.86
4785 5137 8.368668 AGCTCATTTCTGGGTACAAGTATATAC 58.631 37.037 4.60 4.60 0.00 1.47
4786 5138 8.368668 GCTCATTTCTGGGTACAAGTATATACT 58.631 37.037 9.71 9.71 38.39 2.12
4810 5168 7.977293 ACTACAATAACAATATCTGCGTGTGTA 59.023 33.333 0.00 0.00 0.00 2.90
4831 5189 4.737855 ATAGCAGAACGGACAATGTAGT 57.262 40.909 0.00 0.00 0.00 2.73
4835 5193 3.496884 GCAGAACGGACAATGTAGTTCAA 59.503 43.478 25.14 0.00 43.71 2.69
4841 5199 6.182039 ACGGACAATGTAGTTCAAATCATG 57.818 37.500 0.00 0.00 0.00 3.07
4843 5201 6.206634 ACGGACAATGTAGTTCAAATCATGTT 59.793 34.615 0.00 0.00 0.00 2.71
4844 5202 6.524239 CGGACAATGTAGTTCAAATCATGTTG 59.476 38.462 0.00 0.00 0.00 3.33
4845 5203 6.308766 GGACAATGTAGTTCAAATCATGTTGC 59.691 38.462 0.00 0.00 0.00 4.17
4846 5204 6.158598 ACAATGTAGTTCAAATCATGTTGCC 58.841 36.000 0.00 0.00 0.00 4.52
4847 5205 4.418013 TGTAGTTCAAATCATGTTGCCG 57.582 40.909 0.00 0.00 0.00 5.69
4848 5206 2.352503 AGTTCAAATCATGTTGCCGC 57.647 45.000 0.00 0.00 0.00 6.53
4849 5207 1.067635 AGTTCAAATCATGTTGCCGCC 60.068 47.619 0.00 0.00 0.00 6.13
4850 5208 0.109365 TTCAAATCATGTTGCCGCCG 60.109 50.000 0.00 0.00 0.00 6.46
4851 5209 2.160221 CAAATCATGTTGCCGCCGC 61.160 57.895 0.00 0.00 0.00 6.53
4852 5210 3.681961 AAATCATGTTGCCGCCGCG 62.682 57.895 5.59 5.59 38.08 6.46
4876 5234 2.604686 TGGAGGCTTCAGCTCCGT 60.605 61.111 0.00 0.00 39.55 4.69
4879 5237 1.004440 GAGGCTTCAGCTCCGTTGT 60.004 57.895 0.00 0.00 41.70 3.32
4885 5243 2.061773 CTTCAGCTCCGTTGTAGTGTG 58.938 52.381 0.00 0.00 0.00 3.82
5053 5411 1.137675 TCGTGCATGAGGATCTTCAGG 59.862 52.381 14.49 14.49 34.92 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.559698 TTTGCCGACTCAGAATGGAA 57.440 45.000 0.00 0.00 36.16 3.53
21 22 0.875059 CTGTTCCCTTTTGCCGACTC 59.125 55.000 0.00 0.00 0.00 3.36
59 60 3.645687 ACAACATAATTTGCCAACCCAGT 59.354 39.130 0.00 0.00 0.00 4.00
82 83 7.094975 TGGTTTAAGGAAATTGTCATACTCACG 60.095 37.037 0.00 0.00 0.00 4.35
99 100 2.873133 TTTGCCGTGTTGGTTTAAGG 57.127 45.000 0.00 0.00 41.21 2.69
105 106 0.673437 CTTGGATTTGCCGTGTTGGT 59.327 50.000 0.00 0.00 41.21 3.67
107 108 2.791383 TTCTTGGATTTGCCGTGTTG 57.209 45.000 0.00 0.00 40.66 3.33
146 148 0.406361 TCCCCGGTTGGCAAATAGTT 59.594 50.000 0.00 0.00 0.00 2.24
160 162 1.273327 ACACGTAAGGTTAACTCCCCG 59.727 52.381 5.42 6.20 46.39 5.73
161 163 2.299867 TCACACGTAAGGTTAACTCCCC 59.700 50.000 5.42 0.00 46.39 4.81
165 167 4.122046 GGTTGTCACACGTAAGGTTAACT 58.878 43.478 5.42 0.00 46.39 2.24
170 172 2.037144 AGAGGTTGTCACACGTAAGGT 58.963 47.619 0.00 0.00 46.39 3.50
171 173 2.814280 AGAGGTTGTCACACGTAAGG 57.186 50.000 0.00 0.00 46.39 2.69
172 174 5.379304 GCCTTAGAGGTTGTCACACGTAAG 61.379 50.000 0.00 0.00 37.80 2.34
175 177 1.270147 GCCTTAGAGGTTGTCACACGT 60.270 52.381 0.00 0.00 37.80 4.49
177 179 2.417719 CTGCCTTAGAGGTTGTCACAC 58.582 52.381 0.00 0.00 37.80 3.82
178 180 1.270839 GCTGCCTTAGAGGTTGTCACA 60.271 52.381 0.00 0.00 37.80 3.58
179 181 1.443802 GCTGCCTTAGAGGTTGTCAC 58.556 55.000 0.00 0.00 37.80 3.67
180 182 0.324943 GGCTGCCTTAGAGGTTGTCA 59.675 55.000 12.43 0.00 37.80 3.58
181 183 0.615850 AGGCTGCCTTAGAGGTTGTC 59.384 55.000 17.22 0.00 37.80 3.18
182 184 1.068121 AAGGCTGCCTTAGAGGTTGT 58.932 50.000 31.49 4.90 42.74 3.32
183 185 3.965888 AAGGCTGCCTTAGAGGTTG 57.034 52.632 31.49 0.00 42.74 3.77
203 333 0.458260 AAAGGTGTTCGGTTTGTGCC 59.542 50.000 0.00 0.00 0.00 5.01
213 343 6.431198 TTGGATTTCGCTATAAAGGTGTTC 57.569 37.500 0.00 0.00 0.00 3.18
233 363 8.940768 TTTCTTTTTAACATTTCTGTCCTTGG 57.059 30.769 0.00 0.00 33.36 3.61
322 454 8.673711 CGTTCCAAAATAGATGATCCAACTTTA 58.326 33.333 0.00 0.00 0.00 1.85
323 455 7.362920 CCGTTCCAAAATAGATGATCCAACTTT 60.363 37.037 0.00 0.00 0.00 2.66
324 456 6.095440 CCGTTCCAAAATAGATGATCCAACTT 59.905 38.462 0.00 0.00 0.00 2.66
325 457 5.590259 CCGTTCCAAAATAGATGATCCAACT 59.410 40.000 0.00 0.00 0.00 3.16
326 458 5.588648 TCCGTTCCAAAATAGATGATCCAAC 59.411 40.000 0.00 0.00 0.00 3.77
327 459 5.750524 TCCGTTCCAAAATAGATGATCCAA 58.249 37.500 0.00 0.00 0.00 3.53
328 460 5.366482 TCCGTTCCAAAATAGATGATCCA 57.634 39.130 0.00 0.00 0.00 3.41
329 461 4.757149 CCTCCGTTCCAAAATAGATGATCC 59.243 45.833 0.00 0.00 0.00 3.36
330 462 4.757149 CCCTCCGTTCCAAAATAGATGATC 59.243 45.833 0.00 0.00 0.00 2.92
331 463 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
332 464 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
333 465 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
334 466 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
335 467 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
336 468 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
337 469 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
338 470 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
339 471 4.376225 AAATACTCCCTCCGTTCCAAAA 57.624 40.909 0.00 0.00 0.00 2.44
340 472 4.376225 AAAATACTCCCTCCGTTCCAAA 57.624 40.909 0.00 0.00 0.00 3.28
341 473 4.376225 AAAAATACTCCCTCCGTTCCAA 57.624 40.909 0.00 0.00 0.00 3.53
364 496 0.391228 TGTCACTTGGTTGCGCTAGA 59.609 50.000 9.73 0.00 0.00 2.43
365 497 1.442769 ATGTCACTTGGTTGCGCTAG 58.557 50.000 9.73 0.63 0.00 3.42
369 501 3.913763 CACATTTATGTCACTTGGTTGCG 59.086 43.478 0.00 0.00 39.39 4.85
383 515 5.611374 CCGTCTGAAGGGATACACATTTAT 58.389 41.667 1.28 0.00 39.74 1.40
404 542 1.068127 GCACACCCTATGTACTACCCG 59.932 57.143 0.00 0.00 40.64 5.28
435 573 9.764363 ATATTAAATTAGTCAGAATCAGCGACA 57.236 29.630 0.00 0.00 31.92 4.35
521 745 2.937469 TGCCGGACATAAAAAGCATG 57.063 45.000 5.05 0.00 0.00 4.06
522 746 2.481795 GCATGCCGGACATAAAAAGCAT 60.482 45.455 5.05 0.00 41.40 3.79
536 760 0.110688 CATATTCCGTTCGCATGCCG 60.111 55.000 13.15 10.07 38.61 5.69
538 762 3.431912 TGTATCATATTCCGTTCGCATGC 59.568 43.478 7.91 7.91 0.00 4.06
539 763 5.177511 ACTTGTATCATATTCCGTTCGCATG 59.822 40.000 0.00 0.00 0.00 4.06
540 764 5.297547 ACTTGTATCATATTCCGTTCGCAT 58.702 37.500 0.00 0.00 0.00 4.73
541 765 4.689071 ACTTGTATCATATTCCGTTCGCA 58.311 39.130 0.00 0.00 0.00 5.10
542 766 5.688621 TGTACTTGTATCATATTCCGTTCGC 59.311 40.000 0.00 0.00 0.00 4.70
543 767 7.381408 ACATGTACTTGTATCATATTCCGTTCG 59.619 37.037 12.39 0.00 0.00 3.95
546 770 8.958119 AAACATGTACTTGTATCATATTCCGT 57.042 30.769 14.18 0.00 0.00 4.69
568 792 9.712359 ATTCGTACTCAAACAAAGTTTCTAAAC 57.288 29.630 0.00 0.00 39.17 2.01
587 811 9.512435 GGTACATGTATCATATACCATTCGTAC 57.488 37.037 11.38 0.00 36.18 3.67
596 820 5.107133 GTGCCGGGTACATGTATCATATAC 58.893 45.833 17.73 7.57 0.00 1.47
628 852 5.499139 TTTTCATCAAACTCAGTCACACC 57.501 39.130 0.00 0.00 0.00 4.16
670 894 7.827236 ACATTTTGTTCCGGAGATAGTATTTGA 59.173 33.333 3.34 0.00 0.00 2.69
711 935 7.935755 TGACCAAATTTTTGATTTTGCATAGGA 59.064 29.630 4.63 0.00 40.55 2.94
758 984 2.025793 TCCCAAGTCTGTTTGACCACAA 60.026 45.455 0.00 0.00 46.46 3.33
801 1031 2.024273 ACTCCCTCCGTTTCAGATAGGA 60.024 50.000 0.00 0.00 0.00 2.94
802 1032 2.101582 CACTCCCTCCGTTTCAGATAGG 59.898 54.545 0.00 0.00 0.00 2.57
865 1109 1.940613 GTCGGAGCTTCTTGTGTTTGT 59.059 47.619 0.00 0.00 0.00 2.83
995 1241 4.662961 CGGCGCGCTCCATATCCA 62.663 66.667 32.29 0.00 0.00 3.41
1323 1576 1.961394 AGATTGCATGGCTAATGGCTG 59.039 47.619 0.00 0.00 41.46 4.85
1338 1591 1.751927 GCTCAGGGGGCACAGATTG 60.752 63.158 0.00 0.00 0.00 2.67
1488 1742 3.511146 TGCAATCAAGGTGATTTCTTCCC 59.489 43.478 0.70 0.00 44.03 3.97
1497 1751 3.489355 ACATGAGTTGCAATCAAGGTGA 58.511 40.909 0.59 0.00 31.93 4.02
1525 1779 4.152045 GCATTGCAATTTTGTCGAATTCCA 59.848 37.500 9.83 0.00 0.00 3.53
1548 1802 7.989741 AGTTTCCAGATAAACCTATGATGTGAG 59.010 37.037 0.00 0.00 39.66 3.51
1607 1861 4.260139 TGTCTCCGTTATGCAACTAACA 57.740 40.909 10.09 0.00 32.27 2.41
1617 1871 4.319261 GCGAACTTTGTTTGTCTCCGTTAT 60.319 41.667 0.00 0.00 0.00 1.89
1622 1876 3.105937 GTTGCGAACTTTGTTTGTCTCC 58.894 45.455 0.00 0.00 0.00 3.71
1626 1880 1.200484 ACGGTTGCGAACTTTGTTTGT 59.800 42.857 0.00 0.00 0.00 2.83
1666 1920 3.423154 GTGCCGAGCTGTTTCCCG 61.423 66.667 0.00 0.00 0.00 5.14
1683 1938 1.073199 AGTGGGTTTTCCTCAGGCG 59.927 57.895 0.00 0.00 40.46 5.52
1715 1970 2.550606 CGTCCAATTGTCTTTTTCCGGA 59.449 45.455 0.00 0.00 0.00 5.14
1761 2016 7.232330 TGGGATGTGATAACTTTGAATGTTTGA 59.768 33.333 1.70 0.00 0.00 2.69
1796 2051 4.203226 TCTTTTGTGGCACTGATGTTACA 58.797 39.130 19.83 0.00 0.00 2.41
1819 2074 7.056844 AGCCTACTAGATTGATTGGTAGAAC 57.943 40.000 0.00 0.00 33.77 3.01
1899 2154 5.873164 CACAGGTCCAGGTATTAACACTAAC 59.127 44.000 0.00 0.00 0.00 2.34
1995 2250 8.856103 TCCAGAATCTGATACGTAATGACATAA 58.144 33.333 12.53 0.00 32.44 1.90
1996 2251 8.404107 TCCAGAATCTGATACGTAATGACATA 57.596 34.615 12.53 0.00 32.44 2.29
1997 2252 7.290110 TCCAGAATCTGATACGTAATGACAT 57.710 36.000 12.53 0.00 32.44 3.06
1998 2253 6.709018 TCCAGAATCTGATACGTAATGACA 57.291 37.500 12.53 0.00 32.44 3.58
1999 2254 7.598278 AGATCCAGAATCTGATACGTAATGAC 58.402 38.462 12.53 0.00 43.35 3.06
2000 2255 7.767250 AGATCCAGAATCTGATACGTAATGA 57.233 36.000 12.53 0.00 43.35 2.57
2001 2256 8.303156 AGAAGATCCAGAATCTGATACGTAATG 58.697 37.037 12.53 0.00 44.26 1.90
2002 2257 8.303156 CAGAAGATCCAGAATCTGATACGTAAT 58.697 37.037 12.53 0.00 44.26 1.89
2064 2319 1.512926 ACACTCGATTGTCCTTGTGC 58.487 50.000 2.04 0.00 0.00 4.57
2077 2332 4.822350 TGAGGACCTAATCTCATACACTCG 59.178 45.833 0.00 0.00 35.37 4.18
2098 2353 4.096833 GCCATCTTTGCAGTCACATAATGA 59.903 41.667 0.00 0.00 33.79 2.57
2120 2375 5.792741 ACATTCTGGATATCTGCTTCTAGC 58.207 41.667 2.05 0.00 42.82 3.42
2183 2494 8.350238 CTGATCATCAGTACAGAGTACAAATG 57.650 38.462 6.48 11.12 39.58 2.32
2263 2575 4.114073 CTGCAGAGATTGTCATGAGAGAC 58.886 47.826 8.42 0.00 38.99 3.36
2334 2646 3.307242 GTGAGACGATAAATCCAGTGCAC 59.693 47.826 9.40 9.40 0.00 4.57
2336 2648 2.866762 GGTGAGACGATAAATCCAGTGC 59.133 50.000 0.00 0.00 0.00 4.40
2420 2732 7.489160 ACAAGTCAACCCAAAAGTTAAGAATC 58.511 34.615 0.00 0.00 0.00 2.52
2449 2761 5.070685 AGTTCAAAACACCCAGAATAGGAC 58.929 41.667 0.00 0.00 0.00 3.85
2456 2768 2.733956 AGCAAGTTCAAAACACCCAGA 58.266 42.857 0.00 0.00 0.00 3.86
2457 2769 3.548014 CGTAGCAAGTTCAAAACACCCAG 60.548 47.826 0.00 0.00 0.00 4.45
2461 2773 3.955771 TCCGTAGCAAGTTCAAAACAC 57.044 42.857 0.00 0.00 0.00 3.32
2463 2775 4.453136 TGGTATCCGTAGCAAGTTCAAAAC 59.547 41.667 0.00 0.00 35.52 2.43
2546 2859 4.563976 GCACATGCATATTTGAAGTTGGAC 59.436 41.667 0.00 0.00 41.59 4.02
2697 3011 2.807967 GTGAGCTGACATGTTAAGCACA 59.192 45.455 26.85 24.39 39.47 4.57
2698 3012 2.807967 TGTGAGCTGACATGTTAAGCAC 59.192 45.455 26.85 22.70 39.47 4.40
2793 3107 3.944055 ATGCCTGCTATACTAAGACGG 57.056 47.619 0.00 0.00 0.00 4.79
2856 3170 3.981071 ATACAGAACTAGGCTTGCACA 57.019 42.857 0.00 0.00 0.00 4.57
3336 3655 2.290260 TGACATGTTAAGCACCTCTGGG 60.290 50.000 0.00 0.00 38.88 4.45
3337 3656 2.744202 GTGACATGTTAAGCACCTCTGG 59.256 50.000 0.00 0.00 0.00 3.86
3338 3657 3.187227 GTGTGACATGTTAAGCACCTCTG 59.813 47.826 11.61 0.00 0.00 3.35
3339 3658 3.071602 AGTGTGACATGTTAAGCACCTCT 59.928 43.478 11.61 8.06 0.00 3.69
3340 3659 3.403038 AGTGTGACATGTTAAGCACCTC 58.597 45.455 11.61 6.36 0.00 3.85
3341 3660 3.492102 AGTGTGACATGTTAAGCACCT 57.508 42.857 11.61 6.72 0.00 4.00
3342 3661 4.537015 GAAAGTGTGACATGTTAAGCACC 58.463 43.478 11.61 4.96 0.00 5.01
3350 3669 4.156455 ACTGAAGGAAAGTGTGACATGT 57.844 40.909 0.00 0.00 0.00 3.21
3364 3683 2.159170 GCAGTACAGAGGCTACTGAAGG 60.159 54.545 17.19 7.10 42.58 3.46
3435 3754 5.415701 TCCACTCATTTCTTCATTAACAGGC 59.584 40.000 0.00 0.00 0.00 4.85
3596 3915 0.681887 TCCTCCAATCACCGCGAGTA 60.682 55.000 8.23 0.00 0.00 2.59
3651 3971 5.265191 AGATATAGGCGAGCTCCAAGATTA 58.735 41.667 8.47 0.00 0.00 1.75
3712 4033 2.776330 CTCGTGAAGAGCGAGTCTTAC 58.224 52.381 6.56 1.02 46.21 2.34
3720 4041 2.343843 CACATCTTTCTCGTGAAGAGCG 59.656 50.000 0.00 0.00 46.44 5.03
3897 4227 6.830114 AAATTCGCCGTTTGTTAAAATTCA 57.170 29.167 0.00 0.00 0.00 2.57
3955 4285 2.519302 ACACCACTGGCCACAAGC 60.519 61.111 0.00 0.00 42.60 4.01
4062 4392 5.353678 CAGGATTTAAGGAGAACAAGAGCTG 59.646 44.000 0.00 0.00 0.00 4.24
4105 4435 4.796110 AATAGGTTACATGCTCCCACAT 57.204 40.909 0.00 0.00 0.00 3.21
4121 4451 4.039366 GCTAGTGTCCCCTGAAGTAATAGG 59.961 50.000 0.00 0.00 0.00 2.57
4132 4462 0.106619 CTCCTACGCTAGTGTCCCCT 60.107 60.000 13.25 0.00 0.00 4.79
4135 4465 1.603326 GCTACTCCTACGCTAGTGTCC 59.397 57.143 13.25 0.00 0.00 4.02
4142 4472 0.684805 AGCAAGGCTACTCCTACGCT 60.685 55.000 0.00 2.94 46.94 5.07
4158 4488 0.767375 AGAGCCTCAGAAACCAAGCA 59.233 50.000 0.00 0.00 0.00 3.91
4237 4570 3.678072 CGAAGGAAACACGATAAGAAGCA 59.322 43.478 0.00 0.00 35.12 3.91
4251 4584 2.291670 AGAGAGGCTCTACCGAAGGAAA 60.292 50.000 18.75 0.00 45.99 3.13
4258 4595 4.251246 AGCAGAGAGGCTCTACCG 57.749 61.111 18.75 9.87 46.52 4.02
4272 4609 1.818959 GCATTGCAAGTTGGGGAGCA 61.819 55.000 4.94 0.00 34.79 4.26
4292 4629 3.618351 AGGAACCAGCAGAATGAAGATG 58.382 45.455 0.00 0.00 39.69 2.90
4326 4663 6.862209 TCATAGTTTTGTTACATTGCATCCC 58.138 36.000 0.00 0.00 0.00 3.85
4487 4824 2.155155 CGACGGTTTTTCTGACTACTGC 59.845 50.000 0.00 0.00 0.00 4.40
4504 4841 5.844396 GGAAGTAAGAAACAACAAATCGACG 59.156 40.000 0.00 0.00 0.00 5.12
4508 4845 5.920840 GCCAGGAAGTAAGAAACAACAAATC 59.079 40.000 0.00 0.00 0.00 2.17
4509 4846 5.362430 TGCCAGGAAGTAAGAAACAACAAAT 59.638 36.000 0.00 0.00 0.00 2.32
4510 4847 4.707448 TGCCAGGAAGTAAGAAACAACAAA 59.293 37.500 0.00 0.00 0.00 2.83
4511 4848 4.274147 TGCCAGGAAGTAAGAAACAACAA 58.726 39.130 0.00 0.00 0.00 2.83
4512 4849 3.892284 TGCCAGGAAGTAAGAAACAACA 58.108 40.909 0.00 0.00 0.00 3.33
4514 4851 3.255642 GCATGCCAGGAAGTAAGAAACAA 59.744 43.478 6.36 0.00 0.00 2.83
4515 4852 2.819608 GCATGCCAGGAAGTAAGAAACA 59.180 45.455 6.36 0.00 0.00 2.83
4516 4853 2.164422 GGCATGCCAGGAAGTAAGAAAC 59.836 50.000 32.08 0.00 35.81 2.78
4517 4854 2.446435 GGCATGCCAGGAAGTAAGAAA 58.554 47.619 32.08 0.00 35.81 2.52
4521 4858 1.077787 CCGGCATGCCAGGAAGTAA 60.078 57.895 34.93 0.00 35.37 2.24
4535 4872 2.996168 AATATGAGGAGCACGCCGGC 62.996 60.000 19.07 19.07 0.00 6.13
4536 4873 0.317160 TAATATGAGGAGCACGCCGG 59.683 55.000 0.00 0.00 0.00 6.13
4537 4874 1.000163 AGTAATATGAGGAGCACGCCG 60.000 52.381 0.00 0.00 0.00 6.46
4538 4875 2.408050 CAGTAATATGAGGAGCACGCC 58.592 52.381 0.00 0.00 0.00 5.68
4539 4876 2.035961 TCCAGTAATATGAGGAGCACGC 59.964 50.000 0.00 0.00 0.00 5.34
4540 4877 4.051922 GTTCCAGTAATATGAGGAGCACG 58.948 47.826 0.00 0.00 32.41 5.34
4541 4878 4.141711 TGGTTCCAGTAATATGAGGAGCAC 60.142 45.833 0.00 0.00 33.60 4.40
4542 4879 4.037222 TGGTTCCAGTAATATGAGGAGCA 58.963 43.478 0.00 0.00 33.60 4.26
4543 4880 4.689612 TGGTTCCAGTAATATGAGGAGC 57.310 45.455 0.00 0.00 0.00 4.70
4544 4881 6.484643 CACAATGGTTCCAGTAATATGAGGAG 59.515 42.308 0.00 0.00 0.00 3.69
4545 4882 6.069673 ACACAATGGTTCCAGTAATATGAGGA 60.070 38.462 0.00 0.00 0.00 3.71
4546 4883 6.122277 ACACAATGGTTCCAGTAATATGAGG 58.878 40.000 0.00 0.00 0.00 3.86
4547 4884 8.731275 TTACACAATGGTTCCAGTAATATGAG 57.269 34.615 0.00 0.00 0.00 2.90
4548 4885 9.693739 ATTTACACAATGGTTCCAGTAATATGA 57.306 29.630 0.00 0.00 0.00 2.15
4549 4886 9.950680 GATTTACACAATGGTTCCAGTAATATG 57.049 33.333 0.00 0.00 0.00 1.78
4550 4887 9.693739 TGATTTACACAATGGTTCCAGTAATAT 57.306 29.630 0.00 0.00 0.00 1.28
4551 4888 9.693739 ATGATTTACACAATGGTTCCAGTAATA 57.306 29.630 0.00 0.00 0.00 0.98
4552 4889 8.593945 ATGATTTACACAATGGTTCCAGTAAT 57.406 30.769 0.00 0.00 0.00 1.89
4553 4890 9.693739 ATATGATTTACACAATGGTTCCAGTAA 57.306 29.630 0.00 0.00 0.00 2.24
4555 4892 9.866655 ATATATGATTTACACAATGGTTCCAGT 57.133 29.630 0.00 0.00 0.00 4.00
4557 4894 9.076781 CCATATATGATTTACACAATGGTTCCA 57.923 33.333 14.54 0.00 33.96 3.53
4558 4895 9.077885 ACCATATATGATTTACACAATGGTTCC 57.922 33.333 14.54 0.00 41.55 3.62
4559 4896 9.897744 CACCATATATGATTTACACAATGGTTC 57.102 33.333 14.54 0.00 41.96 3.62
4560 4897 9.420118 ACACCATATATGATTTACACAATGGTT 57.580 29.630 14.54 0.00 41.96 3.67
4561 4898 8.849168 CACACCATATATGATTTACACAATGGT 58.151 33.333 14.54 0.00 43.29 3.55
4562 4899 8.849168 ACACACCATATATGATTTACACAATGG 58.151 33.333 14.54 0.00 39.35 3.16
4563 4900 9.882996 GACACACCATATATGATTTACACAATG 57.117 33.333 14.54 0.00 0.00 2.82
4564 4901 9.625747 TGACACACCATATATGATTTACACAAT 57.374 29.630 14.54 0.00 0.00 2.71
4565 4902 9.625747 ATGACACACCATATATGATTTACACAA 57.374 29.630 14.54 0.00 0.00 3.33
4566 4903 9.271828 GATGACACACCATATATGATTTACACA 57.728 33.333 14.54 6.56 0.00 3.72
4567 4904 8.435430 CGATGACACACCATATATGATTTACAC 58.565 37.037 14.54 1.48 0.00 2.90
4568 4905 8.147704 ACGATGACACACCATATATGATTTACA 58.852 33.333 14.54 7.42 0.00 2.41
4569 4906 8.534333 ACGATGACACACCATATATGATTTAC 57.466 34.615 14.54 2.35 0.00 2.01
4570 4907 8.364142 TGACGATGACACACCATATATGATTTA 58.636 33.333 14.54 0.00 0.00 1.40
4571 4908 7.216494 TGACGATGACACACCATATATGATTT 58.784 34.615 14.54 0.00 0.00 2.17
4572 4909 6.758254 TGACGATGACACACCATATATGATT 58.242 36.000 14.54 0.00 0.00 2.57
4573 4910 6.345096 TGACGATGACACACCATATATGAT 57.655 37.500 14.54 0.00 0.00 2.45
4574 4911 5.782893 TGACGATGACACACCATATATGA 57.217 39.130 14.54 0.00 0.00 2.15
4575 4912 7.598493 TGTTATGACGATGACACACCATATATG 59.402 37.037 5.68 5.68 0.00 1.78
4576 4913 7.666623 TGTTATGACGATGACACACCATATAT 58.333 34.615 0.00 0.00 0.00 0.86
4577 4914 7.045126 TGTTATGACGATGACACACCATATA 57.955 36.000 0.00 0.00 0.00 0.86
4578 4915 5.912892 TGTTATGACGATGACACACCATAT 58.087 37.500 0.00 0.00 0.00 1.78
4579 4916 5.331876 TGTTATGACGATGACACACCATA 57.668 39.130 0.00 0.00 0.00 2.74
4580 4917 4.200838 TGTTATGACGATGACACACCAT 57.799 40.909 0.00 0.00 0.00 3.55
4581 4918 3.669251 TGTTATGACGATGACACACCA 57.331 42.857 0.00 0.00 0.00 4.17
4582 4919 4.391830 ACATTGTTATGACGATGACACACC 59.608 41.667 21.43 0.00 46.44 4.16
4583 4920 5.120053 TGACATTGTTATGACGATGACACAC 59.880 40.000 21.43 9.48 46.44 3.82
4584 4921 5.233988 TGACATTGTTATGACGATGACACA 58.766 37.500 21.43 15.05 46.44 3.72
4585 4922 5.778161 TGACATTGTTATGACGATGACAC 57.222 39.130 21.43 13.20 46.44 3.67
4587 4924 5.232202 ACGATGACATTGTTATGACGATGAC 59.768 40.000 21.43 16.33 46.44 3.06
4588 4925 5.348164 ACGATGACATTGTTATGACGATGA 58.652 37.500 21.43 3.73 46.44 2.92
4590 4927 5.348164 TGACGATGACATTGTTATGACGAT 58.652 37.500 9.74 0.00 35.65 3.73
4591 4928 4.739195 TGACGATGACATTGTTATGACGA 58.261 39.130 9.74 0.00 35.65 4.20
4592 4929 4.026558 CCTGACGATGACATTGTTATGACG 60.027 45.833 9.74 0.59 35.65 4.35
4593 4930 4.870426 ACCTGACGATGACATTGTTATGAC 59.130 41.667 9.74 0.00 35.65 3.06
4594 4931 5.084818 ACCTGACGATGACATTGTTATGA 57.915 39.130 9.74 0.00 35.65 2.15
4595 4932 7.482654 AATACCTGACGATGACATTGTTATG 57.517 36.000 9.74 5.69 37.79 1.90
4596 4933 7.656137 GGTAATACCTGACGATGACATTGTTAT 59.344 37.037 9.74 1.55 34.73 1.89
4597 4934 6.982141 GGTAATACCTGACGATGACATTGTTA 59.018 38.462 9.74 5.03 34.73 2.41
4598 4935 5.815740 GGTAATACCTGACGATGACATTGTT 59.184 40.000 9.74 0.00 34.73 2.83
4599 4936 5.357257 GGTAATACCTGACGATGACATTGT 58.643 41.667 8.12 8.12 34.73 2.71
4600 4937 4.444388 CGGTAATACCTGACGATGACATTG 59.556 45.833 7.95 0.75 35.66 2.82
4601 4938 4.098960 ACGGTAATACCTGACGATGACATT 59.901 41.667 7.95 0.00 35.66 2.71
4602 4939 3.635373 ACGGTAATACCTGACGATGACAT 59.365 43.478 7.95 0.00 35.66 3.06
4603 4940 3.018856 ACGGTAATACCTGACGATGACA 58.981 45.455 7.95 0.00 35.66 3.58
4604 4941 3.705043 ACGGTAATACCTGACGATGAC 57.295 47.619 7.95 0.00 35.66 3.06
4605 4942 3.695556 TCAACGGTAATACCTGACGATGA 59.304 43.478 7.95 2.27 35.66 2.92
4606 4943 4.036567 TCAACGGTAATACCTGACGATG 57.963 45.455 7.95 0.00 35.66 3.84
4607 4944 4.931661 ATCAACGGTAATACCTGACGAT 57.068 40.909 7.95 1.91 35.66 3.73
4608 4945 4.724074 AATCAACGGTAATACCTGACGA 57.276 40.909 7.95 0.00 35.66 4.20
4609 4946 5.789710 AAAATCAACGGTAATACCTGACG 57.210 39.130 7.95 0.00 35.66 4.35
4629 4966 4.030216 AGTTCCAGGGCAAGAAAGAAAAA 58.970 39.130 0.00 0.00 0.00 1.94
4630 4967 3.384467 CAGTTCCAGGGCAAGAAAGAAAA 59.616 43.478 0.00 0.00 0.00 2.29
4631 4968 2.958355 CAGTTCCAGGGCAAGAAAGAAA 59.042 45.455 0.00 0.00 0.00 2.52
4632 4969 2.091885 ACAGTTCCAGGGCAAGAAAGAA 60.092 45.455 0.00 0.00 0.00 2.52
4633 4970 1.494721 ACAGTTCCAGGGCAAGAAAGA 59.505 47.619 0.00 0.00 0.00 2.52
4634 4971 1.986882 ACAGTTCCAGGGCAAGAAAG 58.013 50.000 0.00 0.00 0.00 2.62
4635 4972 3.806949 ATACAGTTCCAGGGCAAGAAA 57.193 42.857 0.00 0.00 0.00 2.52
4636 4973 3.806949 AATACAGTTCCAGGGCAAGAA 57.193 42.857 0.00 0.00 0.00 2.52
4637 4974 3.806949 AAATACAGTTCCAGGGCAAGA 57.193 42.857 0.00 0.00 0.00 3.02
4638 4975 3.193479 GGAAAATACAGTTCCAGGGCAAG 59.807 47.826 0.00 0.00 43.52 4.01
4642 4979 4.462834 GGAAAGGAAAATACAGTTCCAGGG 59.537 45.833 6.01 0.00 46.01 4.45
4643 4980 5.325239 AGGAAAGGAAAATACAGTTCCAGG 58.675 41.667 6.01 0.00 46.01 4.45
4647 4984 9.244292 AGGATAAAGGAAAGGAAAATACAGTTC 57.756 33.333 0.00 0.00 0.00 3.01
4654 4991 6.725834 TGCTTCAGGATAAAGGAAAGGAAAAT 59.274 34.615 0.00 0.00 0.00 1.82
4664 5001 5.221382 CCATTTGGATGCTTCAGGATAAAGG 60.221 44.000 1.64 0.00 37.39 3.11
4666 5003 4.099881 GCCATTTGGATGCTTCAGGATAAA 59.900 41.667 0.00 0.00 37.39 1.40
4671 5019 0.462789 GGCCATTTGGATGCTTCAGG 59.537 55.000 0.00 0.00 37.39 3.86
4690 5038 4.752101 CGAAGAGGTATAGAAGGCAATTGG 59.248 45.833 7.72 0.00 0.00 3.16
4695 5043 4.765856 GGATACGAAGAGGTATAGAAGGCA 59.234 45.833 0.00 0.00 33.39 4.75
4700 5048 8.604184 AGTATTGAGGATACGAAGAGGTATAGA 58.396 37.037 0.00 0.00 44.38 1.98
4701 5049 8.795842 AGTATTGAGGATACGAAGAGGTATAG 57.204 38.462 0.00 0.00 44.38 1.31
4725 5073 7.919091 TGGCTCACACGACTATAGTAAATAAAG 59.081 37.037 5.09 1.85 0.00 1.85
4726 5074 7.774134 TGGCTCACACGACTATAGTAAATAAA 58.226 34.615 5.09 0.00 0.00 1.40
4737 5086 0.885879 ACGAATGGCTCACACGACTA 59.114 50.000 0.00 0.00 0.00 2.59
4758 5107 4.373156 ACTTGTACCCAGAAATGAGCTT 57.627 40.909 0.00 0.00 0.00 3.74
4783 5135 7.977293 ACACACGCAGATATTGTTATTGTAGTA 59.023 33.333 0.00 0.00 0.00 1.82
4785 5137 7.234187 ACACACGCAGATATTGTTATTGTAG 57.766 36.000 0.00 0.00 0.00 2.74
4786 5138 8.880878 ATACACACGCAGATATTGTTATTGTA 57.119 30.769 0.00 0.00 0.00 2.41
4788 5140 7.952101 GCTATACACACGCAGATATTGTTATTG 59.048 37.037 0.00 0.00 0.00 1.90
4789 5141 7.655732 TGCTATACACACGCAGATATTGTTATT 59.344 33.333 0.00 0.00 0.00 1.40
4810 5168 4.737855 ACTACATTGTCCGTTCTGCTAT 57.262 40.909 0.00 0.00 0.00 2.97
4819 5177 6.182039 ACATGATTTGAACTACATTGTCCG 57.818 37.500 0.00 0.00 0.00 4.79
4831 5189 0.109365 CGGCGGCAACATGATTTGAA 60.109 50.000 10.53 0.00 0.00 2.69
4835 5193 4.178214 CGCGGCGGCAACATGATT 62.178 61.111 15.84 0.00 39.92 2.57
4849 5207 4.749310 AGCCTCCACTGAAGCGCG 62.749 66.667 0.00 0.00 32.98 6.86
4850 5208 2.359230 AAGCCTCCACTGAAGCGC 60.359 61.111 0.00 0.00 32.98 5.92
4851 5209 1.004560 TGAAGCCTCCACTGAAGCG 60.005 57.895 0.00 0.00 32.98 4.68
4852 5210 1.304509 GCTGAAGCCTCCACTGAAGC 61.305 60.000 0.00 0.00 34.31 3.86
4853 5211 0.324285 AGCTGAAGCCTCCACTGAAG 59.676 55.000 0.00 0.00 43.38 3.02
4854 5212 0.322975 GAGCTGAAGCCTCCACTGAA 59.677 55.000 0.00 0.00 43.38 3.02
4864 5222 1.071605 CACTACAACGGAGCTGAAGC 58.928 55.000 0.00 0.00 42.49 3.86
4894 5252 2.636412 CGTCTGGGAGAAGACCGCA 61.636 63.158 0.00 0.00 43.09 5.69
4895 5253 2.182030 CGTCTGGGAGAAGACCGC 59.818 66.667 0.00 0.00 43.09 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.