Multiple sequence alignment - TraesCS7D01G380400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G380400 chr7D 100.000 3018 0 0 1 3018 493202179 493205196 0.000000e+00 5574.0
1 TraesCS7D01G380400 chr7D 91.542 1407 87 24 1503 2900 491873373 491871990 0.000000e+00 1910.0
2 TraesCS7D01G380400 chr7D 89.181 1405 110 31 1503 2894 493560542 493561917 0.000000e+00 1714.0
3 TraesCS7D01G380400 chr7D 100.000 458 0 0 3259 3716 493205437 493205894 0.000000e+00 846.0
4 TraesCS7D01G380400 chr7D 85.630 508 43 12 970 1474 491874002 491873522 1.190000e-139 507.0
5 TraesCS7D01G380400 chr7D 88.930 271 21 3 1166 1433 493559980 493560244 3.580000e-85 326.0
6 TraesCS7D01G380400 chr7D 87.500 280 18 11 678 956 491877573 491877310 1.300000e-79 307.0
7 TraesCS7D01G380400 chr7D 85.106 94 8 5 3259 3349 32822428 32822338 1.420000e-14 91.6
8 TraesCS7D01G380400 chr7D 100.000 28 0 0 662 689 491881602 491881575 7.000000e-03 52.8
9 TraesCS7D01G380400 chr7B 89.337 2776 156 61 196 2894 522140728 522143440 0.000000e+00 3358.0
10 TraesCS7D01G380400 chr7B 91.566 1411 89 22 1503 2900 521197236 521195843 0.000000e+00 1919.0
11 TraesCS7D01G380400 chr7B 91.181 1406 103 18 1504 2900 521150623 521149230 0.000000e+00 1890.0
12 TraesCS7D01G380400 chr7B 85.276 815 57 27 678 1474 521198146 521197377 0.000000e+00 782.0
13 TraesCS7D01G380400 chr7B 85.239 691 49 25 678 1352 521151507 521150854 0.000000e+00 662.0
14 TraesCS7D01G380400 chr7B 87.500 416 35 12 3313 3716 409710514 409710104 7.270000e-127 464.0
15 TraesCS7D01G380400 chr7A 95.762 1581 63 4 1432 3011 559361710 559363287 0.000000e+00 2545.0
16 TraesCS7D01G380400 chr7A 91.012 1413 103 19 1504 2900 558109940 558108536 0.000000e+00 1884.0
17 TraesCS7D01G380400 chr7A 93.841 828 48 1 1527 2351 559386882 559387709 0.000000e+00 1243.0
18 TraesCS7D01G380400 chr7A 89.594 567 26 17 562 1105 559360903 559361459 0.000000e+00 689.0
19 TraesCS7D01G380400 chr7A 85.007 687 55 28 678 1352 558110824 558110174 0.000000e+00 654.0
20 TraesCS7D01G380400 chr7A 88.563 341 25 7 1 334 559360280 559360613 5.780000e-108 401.0
21 TraesCS7D01G380400 chr7A 94.872 156 5 3 1199 1352 559361519 559361673 1.330000e-59 241.0
22 TraesCS7D01G380400 chr7A 85.654 237 24 6 1166 1400 559386014 559386242 1.330000e-59 241.0
23 TraesCS7D01G380400 chr6A 83.090 822 130 7 1528 2346 564975151 564975966 0.000000e+00 739.0
24 TraesCS7D01G380400 chr6A 89.231 130 14 0 1203 1332 564910495 564910366 2.970000e-36 163.0
25 TraesCS7D01G380400 chr1A 85.772 492 35 12 3259 3716 254377777 254378267 4.310000e-134 488.0
26 TraesCS7D01G380400 chr5D 88.150 346 24 5 3381 3716 229350529 229350191 2.690000e-106 396.0
27 TraesCS7D01G380400 chr5D 82.704 318 34 14 3408 3716 36177098 36176793 2.850000e-66 263.0
28 TraesCS7D01G380400 chr6D 83.807 352 34 17 3376 3716 153167834 153167495 2.790000e-81 313.0
29 TraesCS7D01G380400 chr6D 76.483 489 74 30 3259 3716 94780573 94781051 1.040000e-55 228.0
30 TraesCS7D01G380400 chr4A 84.438 347 22 14 3381 3716 242879964 242879639 2.790000e-81 313.0
31 TraesCS7D01G380400 chr3B 90.870 230 21 0 3417 3646 42633424 42633653 3.600000e-80 309.0
32 TraesCS7D01G380400 chr3B 83.807 352 24 9 3376 3716 525834529 525834858 1.680000e-78 303.0
33 TraesCS7D01G380400 chr3B 81.766 351 31 14 3376 3716 696281728 696282055 2.850000e-66 263.0
34 TraesCS7D01G380400 chr3B 77.682 233 24 11 3259 3466 540101530 540101301 2.340000e-22 117.0
35 TraesCS7D01G380400 chr3D 84.404 327 29 16 3399 3716 556642900 556643213 6.030000e-78 302.0
36 TraesCS7D01G380400 chr3D 84.416 77 9 2 3259 3332 31747437 31747513 5.150000e-09 73.1
37 TraesCS7D01G380400 chr2D 87.448 239 22 5 3486 3716 613089314 613089552 6.120000e-68 268.0
38 TraesCS7D01G380400 chr4B 80.665 331 39 18 3399 3716 251295921 251295603 2.230000e-57 233.0
39 TraesCS7D01G380400 chr1B 85.638 188 20 3 3536 3716 10949714 10949901 1.360000e-44 191.0
40 TraesCS7D01G380400 chr3A 82.174 230 30 8 3259 3478 458668586 458668814 1.760000e-43 187.0
41 TraesCS7D01G380400 chr3A 91.803 61 1 3 3259 3318 316669093 316669150 8.550000e-12 82.4
42 TraesCS7D01G380400 chr4D 86.726 113 10 3 3259 3368 386828733 386828623 1.810000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G380400 chr7D 493202179 493205894 3715 False 3210.0 5574 100.00000 1 3716 2 chr7D.!!$F1 3715
1 TraesCS7D01G380400 chr7D 493559980 493561917 1937 False 1020.0 1714 89.05550 1166 2894 2 chr7D.!!$F2 1728
2 TraesCS7D01G380400 chr7D 491871990 491877573 5583 True 908.0 1910 88.22400 678 2900 3 chr7D.!!$R3 2222
3 TraesCS7D01G380400 chr7B 522140728 522143440 2712 False 3358.0 3358 89.33700 196 2894 1 chr7B.!!$F1 2698
4 TraesCS7D01G380400 chr7B 521195843 521198146 2303 True 1350.5 1919 88.42100 678 2900 2 chr7B.!!$R3 2222
5 TraesCS7D01G380400 chr7B 521149230 521151507 2277 True 1276.0 1890 88.21000 678 2900 2 chr7B.!!$R2 2222
6 TraesCS7D01G380400 chr7A 558108536 558110824 2288 True 1269.0 1884 88.00950 678 2900 2 chr7A.!!$R1 2222
7 TraesCS7D01G380400 chr7A 559360280 559363287 3007 False 969.0 2545 92.19775 1 3011 4 chr7A.!!$F1 3010
8 TraesCS7D01G380400 chr7A 559386014 559387709 1695 False 742.0 1243 89.74750 1166 2351 2 chr7A.!!$F2 1185
9 TraesCS7D01G380400 chr6A 564975151 564975966 815 False 739.0 739 83.09000 1528 2346 1 chr6A.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 950 0.036952 ACTTGGACCGTCATCTGCTG 60.037 55.0 0.00 0.0 0.0 4.41 F
1208 4702 0.179119 GCATGATCTTGTTGCAGGGC 60.179 55.0 10.05 0.0 36.4 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2587 6916 0.176680 CTGGACCCGATCTTCACCAG 59.823 60.0 0.0 0.0 38.77 4.00 R
2921 7266 0.250858 CTCCCAGATGCACCAACACA 60.251 55.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 6.644592 GCCTATAGACTGCATTAACTCAAGAG 59.355 42.308 0.00 0.00 0.00 2.85
117 119 3.003480 GCAACTAATCACCTGTCTGGAC 58.997 50.000 2.23 0.00 39.71 4.02
128 130 5.244402 TCACCTGTCTGGACGAAAAATACTA 59.756 40.000 2.23 0.00 39.71 1.82
129 131 5.929992 CACCTGTCTGGACGAAAAATACTAA 59.070 40.000 2.23 0.00 39.71 2.24
184 190 7.490657 ACTCCAGAAGTGTATGGTATAACAA 57.509 36.000 0.00 0.00 37.41 2.83
188 194 7.822334 TCCAGAAGTGTATGGTATAACAACTTG 59.178 37.037 10.38 0.00 37.41 3.16
191 197 8.380099 AGAAGTGTATGGTATAACAACTTGGAA 58.620 33.333 10.38 0.00 0.00 3.53
256 263 1.487482 CTCTCGTGTTTGCTGACGAA 58.513 50.000 0.00 0.00 43.58 3.85
279 286 2.004017 TGTACGGCCTTAAGCAATTCG 58.996 47.619 0.00 0.00 46.50 3.34
283 290 1.329599 CGGCCTTAAGCAATTCGTACC 59.670 52.381 0.00 0.00 46.50 3.34
335 344 0.171231 TCTGTCACATTCGCTCTCCG 59.829 55.000 0.00 0.00 38.61 4.63
369 378 4.064491 GCGACACTGACAGCACGC 62.064 66.667 19.66 19.66 39.33 5.34
431 440 3.987547 ACCTTCGAGATATCTGCACATG 58.012 45.455 10.74 0.00 0.00 3.21
470 479 0.602905 CTCCACCGTTGGTTCCTCAC 60.603 60.000 0.00 0.00 44.35 3.51
526 551 8.367911 ACATTAACAACAGTCTATCAGTCTCAA 58.632 33.333 0.00 0.00 0.00 3.02
600 763 5.541868 TCCTGCCATGGAAACTTGAAAAATA 59.458 36.000 18.40 0.00 37.69 1.40
643 811 0.108138 CTCCCCATCTTTCTTCGCGT 60.108 55.000 5.77 0.00 0.00 6.01
756 924 0.975135 CATGGAATTTGTGCCACCCA 59.025 50.000 0.00 0.00 36.92 4.51
768 936 0.967380 GCCACCCAGGATTGACTTGG 60.967 60.000 0.00 0.00 44.09 3.61
769 937 0.698238 CCACCCAGGATTGACTTGGA 59.302 55.000 0.00 0.00 46.90 3.53
771 939 0.698818 ACCCAGGATTGACTTGGACC 59.301 55.000 0.00 0.00 46.90 4.46
772 940 0.392998 CCCAGGATTGACTTGGACCG 60.393 60.000 0.00 0.00 46.90 4.79
773 941 0.324943 CCAGGATTGACTTGGACCGT 59.675 55.000 0.00 0.00 46.90 4.83
774 942 1.676014 CCAGGATTGACTTGGACCGTC 60.676 57.143 0.00 0.00 46.90 4.79
775 943 1.001974 CAGGATTGACTTGGACCGTCA 59.998 52.381 0.00 0.00 39.45 4.35
776 944 1.909302 AGGATTGACTTGGACCGTCAT 59.091 47.619 3.39 0.00 40.70 3.06
777 945 2.093447 AGGATTGACTTGGACCGTCATC 60.093 50.000 3.39 4.18 40.70 2.92
778 946 2.093447 GGATTGACTTGGACCGTCATCT 60.093 50.000 3.39 0.00 40.70 2.90
779 947 2.455674 TTGACTTGGACCGTCATCTG 57.544 50.000 3.39 0.00 40.70 2.90
780 948 0.037326 TGACTTGGACCGTCATCTGC 60.037 55.000 0.00 0.00 36.54 4.26
781 949 0.247736 GACTTGGACCGTCATCTGCT 59.752 55.000 0.00 0.00 0.00 4.24
782 950 0.036952 ACTTGGACCGTCATCTGCTG 60.037 55.000 0.00 0.00 0.00 4.41
783 951 0.247460 CTTGGACCGTCATCTGCTGA 59.753 55.000 0.00 0.00 0.00 4.26
784 952 0.684535 TTGGACCGTCATCTGCTGAA 59.315 50.000 0.00 0.00 35.07 3.02
909 1086 3.139077 GCCTATAAATACCAAGCACGCT 58.861 45.455 0.00 0.00 0.00 5.07
1059 4547 2.529619 GCTGCTTCTCGCCGGATTC 61.530 63.158 5.05 0.00 38.05 2.52
1116 4604 3.056607 CGCTCATGGTTCCCTTTTGATTT 60.057 43.478 0.00 0.00 0.00 2.17
1125 4613 9.889128 ATGGTTCCCTTTTGATTTATGTATTTG 57.111 29.630 0.00 0.00 0.00 2.32
1154 4642 5.049612 GTCTTAGTTTGTTTTTCCGAGGAGG 60.050 44.000 0.00 0.00 42.97 4.30
1177 4665 6.827762 AGGAAAAGAATCTGAGCTTAATGGAG 59.172 38.462 0.00 0.00 0.00 3.86
1185 4673 4.761739 TCTGAGCTTAATGGAGGTTTGTTG 59.238 41.667 0.00 0.00 0.00 3.33
1186 4674 3.826157 TGAGCTTAATGGAGGTTTGTTGG 59.174 43.478 0.00 0.00 0.00 3.77
1193 4686 0.318120 GGAGGTTTGTTGGTGGCATG 59.682 55.000 0.00 0.00 0.00 4.06
1208 4702 0.179119 GCATGATCTTGTTGCAGGGC 60.179 55.000 10.05 0.00 36.40 5.19
1268 4762 0.677731 ACATGATGACGGGCAAGGTG 60.678 55.000 0.00 0.00 0.00 4.00
1410 4925 3.929610 GTGTCTCAACATCTAGAGGCAAC 59.070 47.826 3.87 0.00 46.77 4.17
1415 4930 5.012046 TCTCAACATCTAGAGGCAACAGAAA 59.988 40.000 3.87 0.00 41.41 2.52
1416 4931 5.620206 TCAACATCTAGAGGCAACAGAAAA 58.380 37.500 3.87 0.00 41.41 2.29
1417 4932 5.702670 TCAACATCTAGAGGCAACAGAAAAG 59.297 40.000 3.87 0.00 41.41 2.27
1418 4933 4.583871 ACATCTAGAGGCAACAGAAAAGG 58.416 43.478 3.87 0.00 41.41 3.11
1467 4996 5.121611 CGTGGACAACATGCTAAGTTTGATA 59.878 40.000 0.00 0.00 0.00 2.15
2366 6657 1.273759 AGCAGATGAACCAGCTCTCA 58.726 50.000 0.00 0.00 30.05 3.27
2370 6661 3.001414 CAGATGAACCAGCTCTCAAGTG 58.999 50.000 0.00 0.00 0.00 3.16
2371 6662 2.902486 AGATGAACCAGCTCTCAAGTGA 59.098 45.455 0.00 0.00 0.00 3.41
2385 6714 3.722147 TCAAGTGAGAAACTCAGCTGTC 58.278 45.455 14.67 3.54 41.46 3.51
2393 6722 2.522836 AACTCAGCTGTCACTGTCAG 57.477 50.000 14.67 3.29 38.84 3.51
2429 6758 4.058124 TCTTCAACTGTTTGTCTCGATGG 58.942 43.478 0.00 0.00 34.02 3.51
2587 6916 1.416813 CGAGATCGACAGCAAGGTGC 61.417 60.000 0.00 0.00 42.54 5.01
2685 7014 3.706373 GCCGTCTGGGAGAAGCCA 61.706 66.667 0.00 0.00 38.47 4.75
2841 7186 4.220602 ACTTGTACCCAAAATTGATGAGCC 59.779 41.667 0.00 0.00 0.00 4.70
2946 7291 1.078143 GTGCATCTGGGAGGGTGAC 60.078 63.158 0.00 0.00 0.00 3.67
3007 7352 7.861630 TGCTATTTCAAAACAAGTACTCTGTC 58.138 34.615 0.00 0.00 0.00 3.51
3011 7356 6.903883 TTCAAAACAAGTACTCTGTCTGTC 57.096 37.500 0.00 0.00 0.00 3.51
3012 7357 5.972935 TCAAAACAAGTACTCTGTCTGTCA 58.027 37.500 0.00 0.00 0.00 3.58
3013 7358 6.042777 TCAAAACAAGTACTCTGTCTGTCAG 58.957 40.000 0.00 0.00 44.85 3.51
3014 7359 3.651803 ACAAGTACTCTGTCTGTCAGC 57.348 47.619 0.00 0.00 43.32 4.26
3015 7360 3.226777 ACAAGTACTCTGTCTGTCAGCT 58.773 45.455 0.00 0.00 43.32 4.24
3016 7361 3.254657 ACAAGTACTCTGTCTGTCAGCTC 59.745 47.826 0.00 0.00 43.32 4.09
3017 7362 3.433306 AGTACTCTGTCTGTCAGCTCT 57.567 47.619 0.00 0.00 43.32 4.09
3275 7620 3.496711 TGAAATAGCGCCGCTTGG 58.503 55.556 20.18 0.00 40.44 3.61
3276 7621 2.112198 TGAAATAGCGCCGCTTGGG 61.112 57.895 20.18 0.00 40.44 4.12
3306 7651 1.226746 GATAAAATCGGCGTGAGGGG 58.773 55.000 6.85 0.00 0.00 4.79
3307 7652 0.544697 ATAAAATCGGCGTGAGGGGT 59.455 50.000 6.85 0.00 0.00 4.95
3308 7653 0.108041 TAAAATCGGCGTGAGGGGTC 60.108 55.000 6.85 0.00 0.00 4.46
3309 7654 3.659089 AAATCGGCGTGAGGGGTCG 62.659 63.158 6.85 0.00 0.00 4.79
3314 7659 4.754667 GCGTGAGGGGTCGGGTTC 62.755 72.222 0.00 0.00 0.00 3.62
3315 7660 4.078516 CGTGAGGGGTCGGGTTCC 62.079 72.222 0.00 0.00 0.00 3.62
3316 7661 3.714001 GTGAGGGGTCGGGTTCCC 61.714 72.222 0.00 0.00 43.90 3.97
3317 7662 4.257810 TGAGGGGTCGGGTTCCCA 62.258 66.667 8.70 0.00 46.26 4.37
3318 7663 3.400054 GAGGGGTCGGGTTCCCAG 61.400 72.222 8.70 1.53 46.26 4.45
3333 7678 4.351054 CAGCCGAGCCCCCAAGTT 62.351 66.667 0.00 0.00 0.00 2.66
3334 7679 4.035102 AGCCGAGCCCCCAAGTTC 62.035 66.667 0.00 0.00 0.00 3.01
3338 7683 4.035102 GAGCCCCCAAGTTCGCCT 62.035 66.667 0.00 0.00 0.00 5.52
3339 7684 3.978571 GAGCCCCCAAGTTCGCCTC 62.979 68.421 0.00 0.00 0.00 4.70
3341 7686 4.426313 CCCCCAAGTTCGCCTCCC 62.426 72.222 0.00 0.00 0.00 4.30
3342 7687 4.426313 CCCCAAGTTCGCCTCCCC 62.426 72.222 0.00 0.00 0.00 4.81
3343 7688 3.646715 CCCAAGTTCGCCTCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
3344 7689 2.045926 CCAAGTTCGCCTCCCCAG 60.046 66.667 0.00 0.00 0.00 4.45
3345 7690 2.747855 CAAGTTCGCCTCCCCAGC 60.748 66.667 0.00 0.00 0.00 4.85
3346 7691 4.035102 AAGTTCGCCTCCCCAGCC 62.035 66.667 0.00 0.00 0.00 4.85
3353 7698 3.801997 CCTCCCCAGCCGCTGATT 61.802 66.667 22.35 0.00 32.44 2.57
3354 7699 2.273449 CTCCCCAGCCGCTGATTT 59.727 61.111 22.35 0.00 32.44 2.17
3355 7700 1.821332 CTCCCCAGCCGCTGATTTC 60.821 63.158 22.35 0.00 32.44 2.17
3356 7701 3.204827 CCCCAGCCGCTGATTTCG 61.205 66.667 22.35 4.29 32.44 3.46
3364 7709 4.792106 GCTGATTTCGGCGCAAAT 57.208 50.000 10.83 7.68 38.61 2.32
3365 7710 3.034569 GCTGATTTCGGCGCAAATT 57.965 47.368 10.83 0.00 38.61 1.82
3366 7711 2.187351 GCTGATTTCGGCGCAAATTA 57.813 45.000 10.83 3.55 38.61 1.40
3367 7712 2.111756 GCTGATTTCGGCGCAAATTAG 58.888 47.619 20.95 20.95 38.61 1.73
3368 7713 2.477863 GCTGATTTCGGCGCAAATTAGT 60.478 45.455 23.39 1.58 38.61 2.24
3369 7714 3.354397 CTGATTTCGGCGCAAATTAGTC 58.646 45.455 10.83 5.92 29.07 2.59
3370 7715 2.096819 TGATTTCGGCGCAAATTAGTCC 59.903 45.455 10.83 0.00 0.00 3.85
3371 7716 0.806241 TTTCGGCGCAAATTAGTCCC 59.194 50.000 10.83 0.00 0.00 4.46
3372 7717 0.321741 TTCGGCGCAAATTAGTCCCA 60.322 50.000 10.83 0.00 0.00 4.37
3373 7718 0.321741 TCGGCGCAAATTAGTCCCAA 60.322 50.000 10.83 0.00 0.00 4.12
3374 7719 0.523966 CGGCGCAAATTAGTCCCAAA 59.476 50.000 10.83 0.00 0.00 3.28
3375 7720 1.134175 CGGCGCAAATTAGTCCCAAAT 59.866 47.619 10.83 0.00 0.00 2.32
3376 7721 2.416701 CGGCGCAAATTAGTCCCAAATT 60.417 45.455 10.83 0.00 0.00 1.82
3377 7722 3.186909 GGCGCAAATTAGTCCCAAATTC 58.813 45.455 10.83 0.00 0.00 2.17
3378 7723 2.851824 GCGCAAATTAGTCCCAAATTCG 59.148 45.455 0.30 0.00 0.00 3.34
3379 7724 3.426963 GCGCAAATTAGTCCCAAATTCGA 60.427 43.478 0.30 0.00 0.00 3.71
3380 7725 4.095610 CGCAAATTAGTCCCAAATTCGAC 58.904 43.478 0.00 0.00 0.00 4.20
3381 7726 4.378978 CGCAAATTAGTCCCAAATTCGACA 60.379 41.667 0.00 0.00 0.00 4.35
3382 7727 4.857037 GCAAATTAGTCCCAAATTCGACAC 59.143 41.667 0.00 0.00 0.00 3.67
3383 7728 5.563867 GCAAATTAGTCCCAAATTCGACACA 60.564 40.000 0.00 0.00 0.00 3.72
3384 7729 6.442952 CAAATTAGTCCCAAATTCGACACAA 58.557 36.000 0.00 0.00 0.00 3.33
3385 7730 6.642707 AATTAGTCCCAAATTCGACACAAA 57.357 33.333 0.00 0.00 0.00 2.83
3386 7731 6.834168 ATTAGTCCCAAATTCGACACAAAT 57.166 33.333 0.00 0.00 0.00 2.32
3387 7732 6.642707 TTAGTCCCAAATTCGACACAAATT 57.357 33.333 0.00 0.00 0.00 1.82
3388 7733 5.121221 AGTCCCAAATTCGACACAAATTC 57.879 39.130 0.00 0.00 0.00 2.17
3389 7734 4.582656 AGTCCCAAATTCGACACAAATTCA 59.417 37.500 0.00 0.00 0.00 2.57
3390 7735 4.679654 GTCCCAAATTCGACACAAATTCAC 59.320 41.667 0.00 0.00 0.00 3.18
3391 7736 4.339530 TCCCAAATTCGACACAAATTCACA 59.660 37.500 0.00 0.00 0.00 3.58
3392 7737 5.046529 CCCAAATTCGACACAAATTCACAA 58.953 37.500 0.00 0.00 0.00 3.33
3393 7738 5.521735 CCCAAATTCGACACAAATTCACAAA 59.478 36.000 0.00 0.00 0.00 2.83
3394 7739 6.410038 CCAAATTCGACACAAATTCACAAAC 58.590 36.000 0.00 0.00 0.00 2.93
3395 7740 6.255453 CCAAATTCGACACAAATTCACAAACT 59.745 34.615 0.00 0.00 0.00 2.66
3396 7741 7.433719 CCAAATTCGACACAAATTCACAAACTA 59.566 33.333 0.00 0.00 0.00 2.24
3397 7742 8.802856 CAAATTCGACACAAATTCACAAACTAA 58.197 29.630 0.00 0.00 0.00 2.24
3398 7743 9.528018 AAATTCGACACAAATTCACAAACTAAT 57.472 25.926 0.00 0.00 0.00 1.73
3399 7744 9.528018 AATTCGACACAAATTCACAAACTAATT 57.472 25.926 0.00 0.00 0.00 1.40
3400 7745 8.918961 TTCGACACAAATTCACAAACTAATTT 57.081 26.923 0.00 0.00 36.08 1.82
3401 7746 8.918961 TCGACACAAATTCACAAACTAATTTT 57.081 26.923 0.00 0.00 34.01 1.82
3402 7747 9.360093 TCGACACAAATTCACAAACTAATTTTT 57.640 25.926 0.00 0.00 34.01 1.94
3453 7798 8.895932 ATACAAATCAAATAGTTCAACGAAGC 57.104 30.769 0.00 0.00 0.00 3.86
3454 7799 6.734137 ACAAATCAAATAGTTCAACGAAGCA 58.266 32.000 0.00 0.00 0.00 3.91
3455 7800 7.199766 ACAAATCAAATAGTTCAACGAAGCAA 58.800 30.769 0.00 0.00 0.00 3.91
3456 7801 7.704472 ACAAATCAAATAGTTCAACGAAGCAAA 59.296 29.630 0.00 0.00 0.00 3.68
3457 7802 7.623268 AATCAAATAGTTCAACGAAGCAAAC 57.377 32.000 0.00 0.00 0.00 2.93
3458 7803 6.371809 TCAAATAGTTCAACGAAGCAAACT 57.628 33.333 0.00 0.00 36.09 2.66
3459 7804 6.427150 TCAAATAGTTCAACGAAGCAAACTC 58.573 36.000 0.00 0.00 34.09 3.01
3460 7805 6.037720 TCAAATAGTTCAACGAAGCAAACTCA 59.962 34.615 0.00 0.00 34.09 3.41
3461 7806 6.560253 AATAGTTCAACGAAGCAAACTCAT 57.440 33.333 0.00 0.00 34.09 2.90
3462 7807 7.667043 AATAGTTCAACGAAGCAAACTCATA 57.333 32.000 0.00 0.00 34.09 2.15
3463 7808 7.667043 ATAGTTCAACGAAGCAAACTCATAA 57.333 32.000 0.00 0.00 34.09 1.90
3464 7809 6.560253 AGTTCAACGAAGCAAACTCATAAT 57.440 33.333 0.00 0.00 0.00 1.28
3465 7810 6.970484 AGTTCAACGAAGCAAACTCATAATT 58.030 32.000 0.00 0.00 0.00 1.40
3466 7811 7.078228 AGTTCAACGAAGCAAACTCATAATTC 58.922 34.615 0.00 0.00 0.00 2.17
3467 7812 6.552859 TCAACGAAGCAAACTCATAATTCA 57.447 33.333 0.00 0.00 0.00 2.57
3468 7813 6.964908 TCAACGAAGCAAACTCATAATTCAA 58.035 32.000 0.00 0.00 0.00 2.69
3469 7814 7.421599 TCAACGAAGCAAACTCATAATTCAAA 58.578 30.769 0.00 0.00 0.00 2.69
3470 7815 7.378461 TCAACGAAGCAAACTCATAATTCAAAC 59.622 33.333 0.00 0.00 0.00 2.93
3471 7816 6.734137 ACGAAGCAAACTCATAATTCAAACA 58.266 32.000 0.00 0.00 0.00 2.83
3472 7817 6.636850 ACGAAGCAAACTCATAATTCAAACAC 59.363 34.615 0.00 0.00 0.00 3.32
3473 7818 6.636447 CGAAGCAAACTCATAATTCAAACACA 59.364 34.615 0.00 0.00 0.00 3.72
3474 7819 7.167302 CGAAGCAAACTCATAATTCAAACACAA 59.833 33.333 0.00 0.00 0.00 3.33
3475 7820 8.715191 AAGCAAACTCATAATTCAAACACAAA 57.285 26.923 0.00 0.00 0.00 2.83
3476 7821 8.891671 AGCAAACTCATAATTCAAACACAAAT 57.108 26.923 0.00 0.00 0.00 2.32
3477 7822 9.328845 AGCAAACTCATAATTCAAACACAAATT 57.671 25.926 0.00 0.00 0.00 1.82
3500 7845 9.661563 AATTAATACTCATAGTTCAACGAACCA 57.338 29.630 3.31 0.00 42.85 3.67
3501 7846 9.661563 ATTAATACTCATAGTTCAACGAACCAA 57.338 29.630 3.31 0.00 42.85 3.67
3502 7847 7.972832 AATACTCATAGTTCAACGAACCAAA 57.027 32.000 3.31 0.00 42.85 3.28
3503 7848 5.668558 ACTCATAGTTCAACGAACCAAAC 57.331 39.130 3.31 0.00 42.85 2.93
3504 7849 5.365619 ACTCATAGTTCAACGAACCAAACT 58.634 37.500 3.31 0.00 42.85 2.66
3505 7850 5.465724 ACTCATAGTTCAACGAACCAAACTC 59.534 40.000 3.31 0.00 42.85 3.01
3506 7851 5.361427 TCATAGTTCAACGAACCAAACTCA 58.639 37.500 3.31 0.00 42.85 3.41
3507 7852 5.995282 TCATAGTTCAACGAACCAAACTCAT 59.005 36.000 3.31 0.00 42.85 2.90
3508 7853 7.156000 TCATAGTTCAACGAACCAAACTCATA 58.844 34.615 3.31 0.00 42.85 2.15
3509 7854 5.924475 AGTTCAACGAACCAAACTCATAG 57.076 39.130 3.31 0.00 42.85 2.23
3510 7855 5.365619 AGTTCAACGAACCAAACTCATAGT 58.634 37.500 3.31 0.00 42.85 2.12
3511 7856 5.820947 AGTTCAACGAACCAAACTCATAGTT 59.179 36.000 3.31 0.00 42.85 2.24
3512 7857 5.917541 TCAACGAACCAAACTCATAGTTC 57.082 39.130 0.00 0.00 37.47 3.01
3513 7858 5.361427 TCAACGAACCAAACTCATAGTTCA 58.639 37.500 0.00 0.00 37.47 3.18
3514 7859 5.995282 TCAACGAACCAAACTCATAGTTCAT 59.005 36.000 0.00 0.00 37.47 2.57
3515 7860 6.147164 TCAACGAACCAAACTCATAGTTCATC 59.853 38.462 0.00 0.00 37.47 2.92
3516 7861 5.547465 ACGAACCAAACTCATAGTTCATCA 58.453 37.500 0.00 0.00 37.47 3.07
3517 7862 5.408604 ACGAACCAAACTCATAGTTCATCAC 59.591 40.000 0.00 0.00 37.47 3.06
3518 7863 5.408299 CGAACCAAACTCATAGTTCATCACA 59.592 40.000 0.00 0.00 37.47 3.58
3519 7864 6.560253 AACCAAACTCATAGTTCATCACAC 57.440 37.500 0.00 0.00 37.47 3.82
3520 7865 5.620206 ACCAAACTCATAGTTCATCACACA 58.380 37.500 0.00 0.00 37.47 3.72
3521 7866 6.061441 ACCAAACTCATAGTTCATCACACAA 58.939 36.000 0.00 0.00 37.47 3.33
3522 7867 6.017109 ACCAAACTCATAGTTCATCACACAAC 60.017 38.462 0.00 0.00 37.47 3.32
3523 7868 5.845985 AACTCATAGTTCATCACACAACG 57.154 39.130 0.00 0.00 31.77 4.10
3524 7869 5.134202 ACTCATAGTTCATCACACAACGA 57.866 39.130 0.00 0.00 0.00 3.85
3525 7870 5.538118 ACTCATAGTTCATCACACAACGAA 58.462 37.500 0.00 0.00 0.00 3.85
3526 7871 5.405571 ACTCATAGTTCATCACACAACGAAC 59.594 40.000 0.00 0.00 38.40 3.95
3530 7875 4.307432 AGTTCATCACACAACGAACTAGG 58.693 43.478 1.97 0.00 44.66 3.02
3531 7876 2.683968 TCATCACACAACGAACTAGGC 58.316 47.619 0.00 0.00 0.00 3.93
3532 7877 1.390123 CATCACACAACGAACTAGGCG 59.610 52.381 5.82 5.82 0.00 5.52
3533 7878 0.386476 TCACACAACGAACTAGGCGT 59.614 50.000 7.04 7.04 44.94 5.68
3547 7892 3.435186 GCGTTGCCCTTGAGCCTC 61.435 66.667 0.00 0.00 0.00 4.70
3548 7893 2.747855 CGTTGCCCTTGAGCCTCC 60.748 66.667 0.00 0.00 0.00 4.30
3549 7894 2.436109 GTTGCCCTTGAGCCTCCA 59.564 61.111 0.00 0.00 0.00 3.86
3550 7895 1.000396 GTTGCCCTTGAGCCTCCAT 60.000 57.895 0.00 0.00 0.00 3.41
3551 7896 0.255890 GTTGCCCTTGAGCCTCCATA 59.744 55.000 0.00 0.00 0.00 2.74
3552 7897 0.548031 TTGCCCTTGAGCCTCCATAG 59.452 55.000 0.00 0.00 0.00 2.23
3553 7898 1.348008 TGCCCTTGAGCCTCCATAGG 61.348 60.000 0.00 0.00 46.76 2.57
3554 7899 1.348775 GCCCTTGAGCCTCCATAGGT 61.349 60.000 0.00 0.00 45.64 3.08
3555 7900 1.216990 CCCTTGAGCCTCCATAGGTT 58.783 55.000 0.00 0.00 45.64 3.50
3556 7901 2.408565 CCCTTGAGCCTCCATAGGTTA 58.591 52.381 0.00 0.00 45.64 2.85
3557 7902 2.982488 CCCTTGAGCCTCCATAGGTTAT 59.018 50.000 0.00 0.00 45.64 1.89
3558 7903 3.008485 CCCTTGAGCCTCCATAGGTTATC 59.992 52.174 0.00 0.00 45.64 1.75
3559 7904 3.008485 CCTTGAGCCTCCATAGGTTATCC 59.992 52.174 0.00 0.00 45.64 2.59
3560 7905 3.344535 TGAGCCTCCATAGGTTATCCA 57.655 47.619 0.00 0.00 45.64 3.41
3561 7906 2.972713 TGAGCCTCCATAGGTTATCCAC 59.027 50.000 0.00 0.00 45.64 4.02
3562 7907 2.303311 GAGCCTCCATAGGTTATCCACC 59.697 54.545 0.00 0.00 45.64 4.61
3571 7916 1.583054 GGTTATCCACCAGATCGTGC 58.417 55.000 0.00 0.00 46.42 5.34
3572 7917 1.139058 GGTTATCCACCAGATCGTGCT 59.861 52.381 0.00 0.00 46.42 4.40
3573 7918 2.205074 GTTATCCACCAGATCGTGCTG 58.795 52.381 0.00 0.00 36.33 4.41
3574 7919 0.104855 TATCCACCAGATCGTGCTGC 59.895 55.000 0.00 0.00 36.33 5.25
3575 7920 1.902765 ATCCACCAGATCGTGCTGCA 61.903 55.000 0.00 0.00 34.56 4.41
3576 7921 2.104859 CCACCAGATCGTGCTGCAG 61.105 63.158 10.11 10.11 34.56 4.41
3577 7922 1.375140 CACCAGATCGTGCTGCAGT 60.375 57.895 16.64 0.00 34.56 4.40
3578 7923 0.952497 CACCAGATCGTGCTGCAGTT 60.952 55.000 16.64 0.00 34.56 3.16
3579 7924 0.671781 ACCAGATCGTGCTGCAGTTC 60.672 55.000 16.64 7.84 34.56 3.01
3580 7925 0.390866 CCAGATCGTGCTGCAGTTCT 60.391 55.000 16.64 7.42 34.56 3.01
3581 7926 1.436600 CAGATCGTGCTGCAGTTCTT 58.563 50.000 16.64 0.00 0.00 2.52
3582 7927 1.128136 CAGATCGTGCTGCAGTTCTTG 59.872 52.381 16.64 1.45 0.00 3.02
3583 7928 1.001293 AGATCGTGCTGCAGTTCTTGA 59.999 47.619 16.64 7.12 0.00 3.02
3584 7929 2.005451 GATCGTGCTGCAGTTCTTGAT 58.995 47.619 16.64 11.55 0.00 2.57
3585 7930 1.150827 TCGTGCTGCAGTTCTTGATG 58.849 50.000 16.64 0.00 0.00 3.07
3586 7931 0.453950 CGTGCTGCAGTTCTTGATGC 60.454 55.000 16.64 0.00 42.86 3.91
3588 7933 0.594602 TGCTGCAGTTCTTGATGCAC 59.405 50.000 16.64 0.00 46.97 4.57
3589 7934 0.109412 GCTGCAGTTCTTGATGCACC 60.109 55.000 16.64 0.00 46.97 5.01
3590 7935 1.531423 CTGCAGTTCTTGATGCACCT 58.469 50.000 5.25 0.00 46.97 4.00
3591 7936 1.199327 CTGCAGTTCTTGATGCACCTG 59.801 52.381 5.25 0.00 46.97 4.00
3592 7937 1.242076 GCAGTTCTTGATGCACCTGT 58.758 50.000 0.00 0.00 42.11 4.00
3593 7938 1.068748 GCAGTTCTTGATGCACCTGTG 60.069 52.381 0.00 0.00 42.11 3.66
3594 7939 1.538512 CAGTTCTTGATGCACCTGTGG 59.461 52.381 0.00 0.00 0.00 4.17
3595 7940 0.883833 GTTCTTGATGCACCTGTGGG 59.116 55.000 0.00 0.00 38.88 4.61
3597 7942 0.036732 TCTTGATGCACCTGTGGGTC 59.963 55.000 0.00 0.00 45.41 4.46
3598 7943 0.037303 CTTGATGCACCTGTGGGTCT 59.963 55.000 0.00 0.00 45.41 3.85
3599 7944 0.478072 TTGATGCACCTGTGGGTCTT 59.522 50.000 0.00 0.00 45.41 3.01
3600 7945 0.250858 TGATGCACCTGTGGGTCTTG 60.251 55.000 0.00 0.00 45.41 3.02
3601 7946 0.962356 GATGCACCTGTGGGTCTTGG 60.962 60.000 0.00 0.00 45.41 3.61
3602 7947 1.426251 ATGCACCTGTGGGTCTTGGA 61.426 55.000 0.00 0.00 45.41 3.53
3603 7948 1.380302 GCACCTGTGGGTCTTGGAT 59.620 57.895 0.00 0.00 45.41 3.41
3604 7949 0.678048 GCACCTGTGGGTCTTGGATC 60.678 60.000 0.00 0.00 45.41 3.36
3605 7950 0.987294 CACCTGTGGGTCTTGGATCT 59.013 55.000 0.00 0.00 45.41 2.75
3606 7951 1.065854 CACCTGTGGGTCTTGGATCTC 60.066 57.143 0.00 0.00 45.41 2.75
3607 7952 0.543749 CCTGTGGGTCTTGGATCTCC 59.456 60.000 0.00 0.00 0.00 3.71
3608 7953 1.577736 CTGTGGGTCTTGGATCTCCT 58.422 55.000 0.00 0.00 36.82 3.69
3609 7954 1.209019 CTGTGGGTCTTGGATCTCCTG 59.791 57.143 0.00 0.00 36.82 3.86
3610 7955 1.203300 TGTGGGTCTTGGATCTCCTGA 60.203 52.381 0.00 0.00 36.82 3.86
3611 7956 2.122768 GTGGGTCTTGGATCTCCTGAT 58.877 52.381 0.00 0.00 36.82 2.90
3612 7957 2.121948 TGGGTCTTGGATCTCCTGATG 58.878 52.381 0.00 0.00 36.82 3.07
3613 7958 2.293118 TGGGTCTTGGATCTCCTGATGA 60.293 50.000 0.00 0.00 36.82 2.92
3614 7959 2.774234 GGGTCTTGGATCTCCTGATGAA 59.226 50.000 0.00 0.00 36.82 2.57
3615 7960 3.393941 GGGTCTTGGATCTCCTGATGAAT 59.606 47.826 0.00 0.00 36.82 2.57
3616 7961 4.594920 GGGTCTTGGATCTCCTGATGAATA 59.405 45.833 0.00 0.00 36.82 1.75
3617 7962 5.250313 GGGTCTTGGATCTCCTGATGAATAT 59.750 44.000 0.00 0.00 36.82 1.28
3618 7963 6.240118 GGGTCTTGGATCTCCTGATGAATATT 60.240 42.308 0.00 0.00 36.82 1.28
3619 7964 6.654161 GGTCTTGGATCTCCTGATGAATATTG 59.346 42.308 0.00 0.00 36.82 1.90
3620 7965 7.448420 GTCTTGGATCTCCTGATGAATATTGA 58.552 38.462 0.00 0.00 36.82 2.57
3621 7966 7.603404 GTCTTGGATCTCCTGATGAATATTGAG 59.397 40.741 0.00 0.00 36.82 3.02
3622 7967 6.370186 TGGATCTCCTGATGAATATTGAGG 57.630 41.667 0.00 0.00 36.82 3.86
3623 7968 6.086775 TGGATCTCCTGATGAATATTGAGGA 58.913 40.000 0.00 0.00 36.82 3.71
3624 7969 6.559921 TGGATCTCCTGATGAATATTGAGGAA 59.440 38.462 0.00 0.00 32.39 3.36
3625 7970 7.104939 GGATCTCCTGATGAATATTGAGGAAG 58.895 42.308 0.00 0.00 32.39 3.46
3626 7971 6.430962 TCTCCTGATGAATATTGAGGAAGG 57.569 41.667 0.00 0.00 32.39 3.46
3627 7972 4.978099 TCCTGATGAATATTGAGGAAGGC 58.022 43.478 0.00 0.00 29.62 4.35
3628 7973 4.413189 TCCTGATGAATATTGAGGAAGGCA 59.587 41.667 0.00 0.00 29.62 4.75
3629 7974 4.760715 CCTGATGAATATTGAGGAAGGCAG 59.239 45.833 0.00 0.00 0.00 4.85
3630 7975 4.139786 TGATGAATATTGAGGAAGGCAGC 58.860 43.478 0.00 0.00 0.00 5.25
3631 7976 2.936202 TGAATATTGAGGAAGGCAGCC 58.064 47.619 1.84 1.84 0.00 4.85
3632 7977 2.234143 GAATATTGAGGAAGGCAGCCC 58.766 52.381 8.22 0.00 0.00 5.19
3633 7978 1.225373 ATATTGAGGAAGGCAGCCCA 58.775 50.000 8.22 0.00 0.00 5.36
3634 7979 1.225373 TATTGAGGAAGGCAGCCCAT 58.775 50.000 8.22 0.00 0.00 4.00
3635 7980 0.396695 ATTGAGGAAGGCAGCCCATG 60.397 55.000 8.22 0.00 0.00 3.66
3636 7981 1.499913 TTGAGGAAGGCAGCCCATGA 61.500 55.000 8.22 0.00 0.00 3.07
3637 7982 1.284111 TGAGGAAGGCAGCCCATGAT 61.284 55.000 8.22 0.00 0.00 2.45
3638 7983 0.822532 GAGGAAGGCAGCCCATGATG 60.823 60.000 8.22 0.00 0.00 3.07
3644 7989 2.510411 CAGCCCATGATGCCGGTA 59.490 61.111 1.90 0.00 0.00 4.02
3645 7990 1.893808 CAGCCCATGATGCCGGTAC 60.894 63.158 1.90 0.00 0.00 3.34
3646 7991 2.191908 GCCCATGATGCCGGTACA 59.808 61.111 1.90 1.08 0.00 2.90
3647 7992 1.228245 GCCCATGATGCCGGTACAT 60.228 57.895 1.90 0.00 0.00 2.29
3648 7993 1.518056 GCCCATGATGCCGGTACATG 61.518 60.000 21.64 21.64 40.39 3.21
3649 7994 0.108396 CCCATGATGCCGGTACATGA 59.892 55.000 26.57 10.46 42.41 3.07
3650 7995 1.271543 CCCATGATGCCGGTACATGAT 60.272 52.381 26.57 12.01 42.41 2.45
3651 7996 1.808343 CCATGATGCCGGTACATGATG 59.192 52.381 26.57 20.15 42.41 3.07
3652 7997 2.497138 CATGATGCCGGTACATGATGT 58.503 47.619 23.11 2.65 42.41 3.06
3653 7998 1.952193 TGATGCCGGTACATGATGTG 58.048 50.000 8.61 0.00 0.00 3.21
3654 7999 1.229428 GATGCCGGTACATGATGTGG 58.771 55.000 8.61 1.99 0.00 4.17
3655 8000 0.179020 ATGCCGGTACATGATGTGGG 60.179 55.000 8.61 7.94 0.00 4.61
3656 8001 2.186826 GCCGGTACATGATGTGGGC 61.187 63.158 17.17 17.17 36.14 5.36
3657 8002 1.223211 CCGGTACATGATGTGGGCA 59.777 57.895 8.61 0.00 0.00 5.36
3658 8003 0.393673 CCGGTACATGATGTGGGCAA 60.394 55.000 8.61 0.00 0.00 4.52
3659 8004 1.016627 CGGTACATGATGTGGGCAAG 58.983 55.000 8.61 0.00 0.00 4.01
3660 8005 1.406751 CGGTACATGATGTGGGCAAGA 60.407 52.381 8.61 0.00 0.00 3.02
3661 8006 2.292267 GGTACATGATGTGGGCAAGAG 58.708 52.381 8.61 0.00 0.00 2.85
3662 8007 2.292267 GTACATGATGTGGGCAAGAGG 58.708 52.381 8.61 0.00 0.00 3.69
3663 8008 0.994247 ACATGATGTGGGCAAGAGGA 59.006 50.000 0.00 0.00 0.00 3.71
3664 8009 1.340405 ACATGATGTGGGCAAGAGGAC 60.340 52.381 0.00 0.00 0.00 3.85
3670 8015 2.671682 GGGCAAGAGGACCCTGTC 59.328 66.667 0.00 0.00 43.36 3.51
3671 8016 1.920835 GGGCAAGAGGACCCTGTCT 60.921 63.158 0.00 0.00 43.36 3.41
3672 8017 1.298014 GGCAAGAGGACCCTGTCTG 59.702 63.158 0.00 0.00 32.47 3.51
3673 8018 1.484444 GGCAAGAGGACCCTGTCTGT 61.484 60.000 0.00 0.00 32.47 3.41
3674 8019 1.267121 GCAAGAGGACCCTGTCTGTA 58.733 55.000 0.00 0.00 32.47 2.74
3675 8020 1.623811 GCAAGAGGACCCTGTCTGTAA 59.376 52.381 0.00 0.00 32.47 2.41
3676 8021 2.237392 GCAAGAGGACCCTGTCTGTAAT 59.763 50.000 0.00 0.00 32.47 1.89
3677 8022 3.451178 GCAAGAGGACCCTGTCTGTAATA 59.549 47.826 0.00 0.00 32.47 0.98
3678 8023 4.101741 GCAAGAGGACCCTGTCTGTAATAT 59.898 45.833 0.00 0.00 32.47 1.28
3679 8024 5.605534 CAAGAGGACCCTGTCTGTAATATG 58.394 45.833 0.00 0.00 32.47 1.78
3680 8025 4.227197 AGAGGACCCTGTCTGTAATATGG 58.773 47.826 0.00 0.00 32.47 2.74
3681 8026 3.967987 GAGGACCCTGTCTGTAATATGGT 59.032 47.826 0.00 0.00 32.47 3.55
3682 8027 4.371681 AGGACCCTGTCTGTAATATGGTT 58.628 43.478 0.00 0.00 32.47 3.67
3683 8028 4.409247 AGGACCCTGTCTGTAATATGGTTC 59.591 45.833 0.00 0.00 32.47 3.62
3684 8029 4.369182 GACCCTGTCTGTAATATGGTTCG 58.631 47.826 0.00 0.00 0.00 3.95
3685 8030 3.134081 ACCCTGTCTGTAATATGGTTCGG 59.866 47.826 0.00 0.00 0.00 4.30
3686 8031 3.134081 CCCTGTCTGTAATATGGTTCGGT 59.866 47.826 0.00 0.00 0.00 4.69
3687 8032 4.119862 CCTGTCTGTAATATGGTTCGGTG 58.880 47.826 0.00 0.00 0.00 4.94
3688 8033 4.382685 CCTGTCTGTAATATGGTTCGGTGT 60.383 45.833 0.00 0.00 0.00 4.16
3689 8034 4.751060 TGTCTGTAATATGGTTCGGTGTC 58.249 43.478 0.00 0.00 0.00 3.67
3690 8035 4.221041 TGTCTGTAATATGGTTCGGTGTCA 59.779 41.667 0.00 0.00 0.00 3.58
3691 8036 5.172934 GTCTGTAATATGGTTCGGTGTCAA 58.827 41.667 0.00 0.00 0.00 3.18
3692 8037 5.640357 GTCTGTAATATGGTTCGGTGTCAAA 59.360 40.000 0.00 0.00 0.00 2.69
3693 8038 5.640357 TCTGTAATATGGTTCGGTGTCAAAC 59.360 40.000 0.00 0.00 0.00 2.93
3694 8039 4.389382 TGTAATATGGTTCGGTGTCAAACG 59.611 41.667 0.00 0.00 0.00 3.60
3695 8040 1.149987 TATGGTTCGGTGTCAAACGC 58.850 50.000 0.00 0.00 0.00 4.84
3696 8041 0.534203 ATGGTTCGGTGTCAAACGCT 60.534 50.000 0.00 0.00 0.00 5.07
3697 8042 1.278637 GGTTCGGTGTCAAACGCTG 59.721 57.895 0.00 0.00 36.36 5.18
3698 8043 1.278637 GTTCGGTGTCAAACGCTGG 59.721 57.895 0.05 0.00 35.75 4.85
3699 8044 2.539338 TTCGGTGTCAAACGCTGGC 61.539 57.895 0.05 0.00 35.75 4.85
3700 8045 2.933878 TTCGGTGTCAAACGCTGGCT 62.934 55.000 0.05 0.00 35.75 4.75
3701 8046 2.946762 GGTGTCAAACGCTGGCTC 59.053 61.111 0.00 0.00 0.00 4.70
3702 8047 1.598130 GGTGTCAAACGCTGGCTCT 60.598 57.895 0.00 0.00 0.00 4.09
3703 8048 1.166531 GGTGTCAAACGCTGGCTCTT 61.167 55.000 0.00 0.00 0.00 2.85
3704 8049 0.235926 GTGTCAAACGCTGGCTCTTC 59.764 55.000 0.00 0.00 0.00 2.87
3705 8050 0.884704 TGTCAAACGCTGGCTCTTCC 60.885 55.000 0.00 0.00 0.00 3.46
3706 8051 0.603975 GTCAAACGCTGGCTCTTCCT 60.604 55.000 0.00 0.00 35.26 3.36
3707 8052 0.603707 TCAAACGCTGGCTCTTCCTG 60.604 55.000 0.00 0.00 36.91 3.86
3712 8057 2.511145 CTGGCTCTTCCTGCTCGC 60.511 66.667 0.00 0.00 35.26 5.03
3713 8058 2.999648 TGGCTCTTCCTGCTCGCT 61.000 61.111 0.00 0.00 35.26 4.93
3714 8059 2.202864 GGCTCTTCCTGCTCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
3715 8060 2.720134 GGCTCTTCCTGCTCGCTCT 61.720 63.158 0.00 0.00 0.00 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 4.730035 GCATGCTCTTGAGTTAATGCAGTC 60.730 45.833 11.37 0.00 40.05 3.51
88 90 1.202336 GGTGATTAGTTGCCTGCATGC 60.202 52.381 11.82 11.82 0.00 4.06
139 142 7.128728 TGGAGTGGAATTCTCTGGGATTTATTA 59.871 37.037 5.23 0.00 33.06 0.98
149 152 4.550076 ACTTCTGGAGTGGAATTCTCTG 57.450 45.455 5.23 0.00 37.17 3.35
160 163 7.180408 AGTTGTTATACCATACACTTCTGGAGT 59.820 37.037 0.00 0.00 39.89 3.85
175 178 6.232692 TGTACCACTTCCAAGTTGTTATACC 58.767 40.000 1.45 0.00 37.08 2.73
184 190 7.253905 AGTATTACATGTACCACTTCCAAGT 57.746 36.000 4.68 0.00 40.60 3.16
188 194 5.068198 TCGGAGTATTACATGTACCACTTCC 59.932 44.000 16.05 15.82 0.00 3.46
191 197 4.951715 TGTCGGAGTATTACATGTACCACT 59.048 41.667 15.24 15.24 0.00 4.00
256 263 4.438200 CGAATTGCTTAAGGCCGTACATTT 60.438 41.667 4.29 0.00 40.92 2.32
279 286 1.076533 CACAGCACACGATCGGGTAC 61.077 60.000 24.85 18.70 0.00 3.34
283 290 1.153842 TAGCACAGCACACGATCGG 60.154 57.895 20.98 10.92 0.00 4.18
335 344 1.078759 CGCGTGACTTGGATGGAGAC 61.079 60.000 0.00 0.00 0.00 3.36
369 378 1.006805 CGCATCGGAGGAAGCTAGG 60.007 63.158 0.00 0.00 34.81 3.02
394 403 3.687200 GAAGGTTTTTGGTGTGTGTACG 58.313 45.455 0.00 0.00 0.00 3.67
470 479 1.133482 ACAGGACACTCCTTTTTGGGG 60.133 52.381 0.00 0.00 46.91 4.96
546 600 8.409371 TCAGTGCAAAATGTATCTGTACAAAAA 58.591 29.630 0.00 0.00 43.60 1.94
547 601 7.935520 TCAGTGCAAAATGTATCTGTACAAAA 58.064 30.769 0.00 0.00 43.60 2.44
548 602 7.228507 ACTCAGTGCAAAATGTATCTGTACAAA 59.771 33.333 0.00 0.00 43.60 2.83
549 603 6.710295 ACTCAGTGCAAAATGTATCTGTACAA 59.290 34.615 0.00 0.00 43.60 2.41
550 604 6.230472 ACTCAGTGCAAAATGTATCTGTACA 58.770 36.000 0.00 0.00 44.43 2.90
600 763 7.844009 AGGAAATGAATTGAACATAGTGCAAT 58.156 30.769 0.00 0.00 42.97 3.56
643 811 5.963092 TCCAATGGGAAATATAAGCATGGA 58.037 37.500 0.00 0.00 41.32 3.41
756 924 1.348064 TGACGGTCCAAGTCAATCCT 58.652 50.000 5.55 0.00 44.56 3.24
768 936 0.654683 GCATTCAGCAGATGACGGTC 59.345 55.000 0.00 0.00 44.79 4.79
769 937 2.772739 GCATTCAGCAGATGACGGT 58.227 52.632 0.00 0.00 44.79 4.83
779 947 3.442100 GATAAAAGGTGCAGCATTCAGC 58.558 45.455 19.63 0.00 46.19 4.26
780 948 3.127548 ACGATAAAAGGTGCAGCATTCAG 59.872 43.478 19.63 7.36 0.00 3.02
781 949 3.081061 ACGATAAAAGGTGCAGCATTCA 58.919 40.909 19.63 0.00 0.00 2.57
782 950 3.764885 ACGATAAAAGGTGCAGCATTC 57.235 42.857 19.63 6.14 0.00 2.67
783 951 4.457603 TGTTACGATAAAAGGTGCAGCATT 59.542 37.500 19.63 9.96 0.00 3.56
784 952 4.006989 TGTTACGATAAAAGGTGCAGCAT 58.993 39.130 19.63 2.39 0.00 3.79
909 1086 3.366985 CGACTGATGGCTACAAGTGTACA 60.367 47.826 0.00 0.00 0.00 2.90
1125 4613 7.008901 CCTCGGAAAAACAAACTAAGACAAAAC 59.991 37.037 0.00 0.00 0.00 2.43
1131 4619 5.061179 CCTCCTCGGAAAAACAAACTAAGA 58.939 41.667 0.00 0.00 33.16 2.10
1154 4642 6.601217 ACCTCCATTAAGCTCAGATTCTTTTC 59.399 38.462 0.00 0.00 0.00 2.29
1155 4643 6.488715 ACCTCCATTAAGCTCAGATTCTTTT 58.511 36.000 0.00 0.00 0.00 2.27
1156 4644 6.072199 ACCTCCATTAAGCTCAGATTCTTT 57.928 37.500 0.00 0.00 0.00 2.52
1177 4665 1.895131 AGATCATGCCACCAACAAACC 59.105 47.619 0.00 0.00 0.00 3.27
1185 4673 0.889994 TGCAACAAGATCATGCCACC 59.110 50.000 0.00 0.00 39.31 4.61
1186 4674 1.135199 CCTGCAACAAGATCATGCCAC 60.135 52.381 0.00 0.00 39.31 5.01
1193 4686 1.538047 TGAAGCCCTGCAACAAGATC 58.462 50.000 0.00 0.00 0.00 2.75
1208 4702 0.679505 TCCACGACTCCCAGTTGAAG 59.320 55.000 0.00 0.00 33.76 3.02
1258 4752 3.605749 ATGTCGTCCACCTTGCCCG 62.606 63.158 0.00 0.00 0.00 6.13
1410 4925 4.307032 TGATTCCTTCCCTCCTTTTCTG 57.693 45.455 0.00 0.00 0.00 3.02
1415 4930 4.238669 CCTCTATGATTCCTTCCCTCCTT 58.761 47.826 0.00 0.00 0.00 3.36
1416 4931 3.868062 CCTCTATGATTCCTTCCCTCCT 58.132 50.000 0.00 0.00 0.00 3.69
1417 4932 2.304470 GCCTCTATGATTCCTTCCCTCC 59.696 54.545 0.00 0.00 0.00 4.30
1418 4933 2.028567 CGCCTCTATGATTCCTTCCCTC 60.029 54.545 0.00 0.00 0.00 4.30
2366 6657 3.133721 AGTGACAGCTGAGTTTCTCACTT 59.866 43.478 22.79 11.83 35.88 3.16
2370 6661 3.056304 GACAGTGACAGCTGAGTTTCTC 58.944 50.000 23.35 6.77 39.62 2.87
2371 6662 2.432146 TGACAGTGACAGCTGAGTTTCT 59.568 45.455 23.35 8.16 39.62 2.52
2381 6710 1.863454 GTGCAAGACTGACAGTGACAG 59.137 52.381 14.14 19.10 40.68 3.51
2383 6712 1.594862 GTGTGCAAGACTGACAGTGAC 59.405 52.381 14.14 0.00 0.00 3.67
2385 6714 1.655484 TGTGTGCAAGACTGACAGTG 58.345 50.000 14.14 0.00 0.00 3.66
2393 6722 4.736793 CAGTTGAAGAAATGTGTGCAAGAC 59.263 41.667 0.00 0.00 0.00 3.01
2523 6852 0.610174 TGAGGATCTTGAGTGCGCTT 59.390 50.000 9.73 0.00 34.92 4.68
2587 6916 0.176680 CTGGACCCGATCTTCACCAG 59.823 60.000 0.00 0.00 38.77 4.00
2649 6978 1.080705 GTAGTCGTTGCCGTGAGCT 60.081 57.895 0.00 0.00 44.23 4.09
2652 6981 2.429571 GCGTAGTCGTTGCCGTGA 60.430 61.111 0.00 0.00 39.49 4.35
2841 7186 2.923655 AGTCGTGTGAGCAATTCGTATG 59.076 45.455 0.00 0.00 0.00 2.39
2921 7266 0.250858 CTCCCAGATGCACCAACACA 60.251 55.000 0.00 0.00 0.00 3.72
2922 7267 0.962356 CCTCCCAGATGCACCAACAC 60.962 60.000 0.00 0.00 0.00 3.32
2946 7291 5.254115 ACATGCCATCATTCCATCTGATAG 58.746 41.667 0.00 0.00 32.18 2.08
3258 7603 2.112198 CCCAAGCGGCGCTATTTCA 61.112 57.895 36.59 0.00 38.25 2.69
3259 7604 2.715624 CCCAAGCGGCGCTATTTC 59.284 61.111 36.59 2.70 38.25 2.17
3260 7605 2.828549 CCCCAAGCGGCGCTATTT 60.829 61.111 36.59 17.90 38.25 1.40
3278 7623 3.817960 CGATTTTATCGCCGGTTGG 57.182 52.632 1.90 0.00 46.55 3.77
3287 7632 1.226746 CCCCTCACGCCGATTTTATC 58.773 55.000 0.00 0.00 0.00 1.75
3288 7633 0.544697 ACCCCTCACGCCGATTTTAT 59.455 50.000 0.00 0.00 0.00 1.40
3289 7634 0.108041 GACCCCTCACGCCGATTTTA 60.108 55.000 0.00 0.00 0.00 1.52
3290 7635 1.376812 GACCCCTCACGCCGATTTT 60.377 57.895 0.00 0.00 0.00 1.82
3291 7636 2.267961 GACCCCTCACGCCGATTT 59.732 61.111 0.00 0.00 0.00 2.17
3292 7637 4.143333 CGACCCCTCACGCCGATT 62.143 66.667 0.00 0.00 0.00 3.34
3297 7642 4.754667 GAACCCGACCCCTCACGC 62.755 72.222 0.00 0.00 0.00 5.34
3298 7643 4.078516 GGAACCCGACCCCTCACG 62.079 72.222 0.00 0.00 0.00 4.35
3316 7661 4.351054 AACTTGGGGGCTCGGCTG 62.351 66.667 0.00 0.00 0.00 4.85
3317 7662 4.035102 GAACTTGGGGGCTCGGCT 62.035 66.667 0.00 0.00 0.00 5.52
3321 7666 3.978571 GAGGCGAACTTGGGGGCTC 62.979 68.421 0.00 0.00 44.43 4.70
3322 7667 4.035102 GAGGCGAACTTGGGGGCT 62.035 66.667 0.00 0.00 39.50 5.19
3324 7669 4.426313 GGGAGGCGAACTTGGGGG 62.426 72.222 0.00 0.00 0.00 5.40
3325 7670 4.426313 GGGGAGGCGAACTTGGGG 62.426 72.222 0.00 0.00 0.00 4.96
3326 7671 3.628646 CTGGGGAGGCGAACTTGGG 62.629 68.421 0.00 0.00 0.00 4.12
3327 7672 2.045926 CTGGGGAGGCGAACTTGG 60.046 66.667 0.00 0.00 0.00 3.61
3328 7673 2.747855 GCTGGGGAGGCGAACTTG 60.748 66.667 0.00 0.00 0.00 3.16
3329 7674 4.035102 GGCTGGGGAGGCGAACTT 62.035 66.667 0.00 0.00 0.00 2.66
3336 7681 3.350031 AAATCAGCGGCTGGGGAGG 62.350 63.158 28.18 3.16 31.51 4.30
3337 7682 1.821332 GAAATCAGCGGCTGGGGAG 60.821 63.158 28.18 3.94 31.51 4.30
3338 7683 2.272146 GAAATCAGCGGCTGGGGA 59.728 61.111 28.18 11.16 31.51 4.81
3339 7684 3.204827 CGAAATCAGCGGCTGGGG 61.205 66.667 28.18 10.50 31.51 4.96
3340 7685 3.204827 CCGAAATCAGCGGCTGGG 61.205 66.667 28.18 17.54 42.55 4.45
3347 7692 2.111756 CTAATTTGCGCCGAAATCAGC 58.888 47.619 4.18 0.00 0.00 4.26
3348 7693 3.354397 GACTAATTTGCGCCGAAATCAG 58.646 45.455 4.18 3.17 0.00 2.90
3349 7694 2.096819 GGACTAATTTGCGCCGAAATCA 59.903 45.455 4.18 0.00 0.00 2.57
3350 7695 2.540973 GGGACTAATTTGCGCCGAAATC 60.541 50.000 4.18 0.00 0.00 2.17
3351 7696 1.404035 GGGACTAATTTGCGCCGAAAT 59.596 47.619 4.18 1.75 0.00 2.17
3352 7697 0.806241 GGGACTAATTTGCGCCGAAA 59.194 50.000 4.18 0.00 0.00 3.46
3353 7698 0.321741 TGGGACTAATTTGCGCCGAA 60.322 50.000 4.18 0.00 0.00 4.30
3354 7699 0.321741 TTGGGACTAATTTGCGCCGA 60.322 50.000 4.18 0.00 0.00 5.54
3355 7700 0.523966 TTTGGGACTAATTTGCGCCG 59.476 50.000 4.18 0.00 0.00 6.46
3356 7701 2.959507 ATTTGGGACTAATTTGCGCC 57.040 45.000 4.18 0.00 0.00 6.53
3357 7702 2.851824 CGAATTTGGGACTAATTTGCGC 59.148 45.455 0.00 0.00 0.00 6.09
3358 7703 4.095610 GTCGAATTTGGGACTAATTTGCG 58.904 43.478 0.00 0.00 0.00 4.85
3359 7704 4.857037 GTGTCGAATTTGGGACTAATTTGC 59.143 41.667 0.00 0.00 34.31 3.68
3360 7705 6.007936 TGTGTCGAATTTGGGACTAATTTG 57.992 37.500 0.00 0.00 34.31 2.32
3361 7706 6.642707 TTGTGTCGAATTTGGGACTAATTT 57.357 33.333 0.00 0.00 34.31 1.82
3362 7707 6.642707 TTTGTGTCGAATTTGGGACTAATT 57.357 33.333 0.00 0.00 34.31 1.40
3363 7708 6.834168 ATTTGTGTCGAATTTGGGACTAAT 57.166 33.333 0.00 0.00 34.31 1.73
3364 7709 6.263392 TGAATTTGTGTCGAATTTGGGACTAA 59.737 34.615 0.00 0.00 34.31 2.24
3365 7710 5.765677 TGAATTTGTGTCGAATTTGGGACTA 59.234 36.000 0.00 0.00 34.31 2.59
3366 7711 4.582656 TGAATTTGTGTCGAATTTGGGACT 59.417 37.500 0.00 0.00 34.31 3.85
3367 7712 4.679654 GTGAATTTGTGTCGAATTTGGGAC 59.320 41.667 0.00 0.00 28.70 4.46
3368 7713 4.339530 TGTGAATTTGTGTCGAATTTGGGA 59.660 37.500 0.00 0.00 28.70 4.37
3369 7714 4.615949 TGTGAATTTGTGTCGAATTTGGG 58.384 39.130 0.00 0.00 28.70 4.12
3370 7715 6.255453 AGTTTGTGAATTTGTGTCGAATTTGG 59.745 34.615 0.00 0.00 28.70 3.28
3371 7716 7.220599 AGTTTGTGAATTTGTGTCGAATTTG 57.779 32.000 0.00 0.00 28.70 2.32
3372 7717 8.918961 TTAGTTTGTGAATTTGTGTCGAATTT 57.081 26.923 0.00 0.00 28.70 1.82
3373 7718 9.528018 AATTAGTTTGTGAATTTGTGTCGAATT 57.472 25.926 0.00 0.00 30.94 2.17
3374 7719 9.528018 AAATTAGTTTGTGAATTTGTGTCGAAT 57.472 25.926 0.00 0.00 34.70 3.34
3375 7720 8.918961 AAATTAGTTTGTGAATTTGTGTCGAA 57.081 26.923 0.00 0.00 34.70 3.71
3376 7721 8.918961 AAAATTAGTTTGTGAATTTGTGTCGA 57.081 26.923 0.00 0.00 35.84 4.20
3427 7772 9.341899 GCTTCGTTGAACTATTTGATTTGTATT 57.658 29.630 0.00 0.00 0.00 1.89
3428 7773 8.511321 TGCTTCGTTGAACTATTTGATTTGTAT 58.489 29.630 0.00 0.00 0.00 2.29
3429 7774 7.866729 TGCTTCGTTGAACTATTTGATTTGTA 58.133 30.769 0.00 0.00 0.00 2.41
3430 7775 6.734137 TGCTTCGTTGAACTATTTGATTTGT 58.266 32.000 0.00 0.00 0.00 2.83
3431 7776 7.621832 TTGCTTCGTTGAACTATTTGATTTG 57.378 32.000 0.00 0.00 0.00 2.32
3432 7777 7.920682 AGTTTGCTTCGTTGAACTATTTGATTT 59.079 29.630 0.00 0.00 31.05 2.17
3433 7778 7.425606 AGTTTGCTTCGTTGAACTATTTGATT 58.574 30.769 0.00 0.00 31.05 2.57
3434 7779 6.970484 AGTTTGCTTCGTTGAACTATTTGAT 58.030 32.000 0.00 0.00 31.05 2.57
3435 7780 6.037720 TGAGTTTGCTTCGTTGAACTATTTGA 59.962 34.615 0.00 0.00 32.85 2.69
3436 7781 6.198687 TGAGTTTGCTTCGTTGAACTATTTG 58.801 36.000 0.00 0.00 32.85 2.32
3437 7782 6.371809 TGAGTTTGCTTCGTTGAACTATTT 57.628 33.333 0.00 0.00 32.85 1.40
3438 7783 6.560253 ATGAGTTTGCTTCGTTGAACTATT 57.440 33.333 0.00 0.00 32.85 1.73
3439 7784 7.667043 TTATGAGTTTGCTTCGTTGAACTAT 57.333 32.000 0.00 0.00 32.85 2.12
3440 7785 7.667043 ATTATGAGTTTGCTTCGTTGAACTA 57.333 32.000 0.00 0.00 32.85 2.24
3441 7786 6.560253 ATTATGAGTTTGCTTCGTTGAACT 57.440 33.333 0.00 0.00 35.22 3.01
3442 7787 6.855914 TGAATTATGAGTTTGCTTCGTTGAAC 59.144 34.615 0.00 0.00 0.00 3.18
3443 7788 6.964908 TGAATTATGAGTTTGCTTCGTTGAA 58.035 32.000 0.00 0.00 0.00 2.69
3444 7789 6.552859 TGAATTATGAGTTTGCTTCGTTGA 57.447 33.333 0.00 0.00 0.00 3.18
3445 7790 7.167302 TGTTTGAATTATGAGTTTGCTTCGTTG 59.833 33.333 0.00 0.00 0.00 4.10
3446 7791 7.167468 GTGTTTGAATTATGAGTTTGCTTCGTT 59.833 33.333 0.00 0.00 0.00 3.85
3447 7792 6.636850 GTGTTTGAATTATGAGTTTGCTTCGT 59.363 34.615 0.00 0.00 0.00 3.85
3448 7793 6.636447 TGTGTTTGAATTATGAGTTTGCTTCG 59.364 34.615 0.00 0.00 0.00 3.79
3449 7794 7.928908 TGTGTTTGAATTATGAGTTTGCTTC 57.071 32.000 0.00 0.00 0.00 3.86
3450 7795 8.715191 TTTGTGTTTGAATTATGAGTTTGCTT 57.285 26.923 0.00 0.00 0.00 3.91
3451 7796 8.891671 ATTTGTGTTTGAATTATGAGTTTGCT 57.108 26.923 0.00 0.00 0.00 3.91
3474 7819 9.661563 TGGTTCGTTGAACTATGAGTATTAATT 57.338 29.630 9.32 0.00 41.70 1.40
3475 7820 9.661563 TTGGTTCGTTGAACTATGAGTATTAAT 57.338 29.630 9.32 0.00 41.70 1.40
3476 7821 9.491675 TTTGGTTCGTTGAACTATGAGTATTAA 57.508 29.630 9.32 0.00 41.70 1.40
3477 7822 8.928733 GTTTGGTTCGTTGAACTATGAGTATTA 58.071 33.333 9.32 0.00 41.70 0.98
3478 7823 7.660208 AGTTTGGTTCGTTGAACTATGAGTATT 59.340 33.333 9.32 0.00 41.70 1.89
3479 7824 7.159372 AGTTTGGTTCGTTGAACTATGAGTAT 58.841 34.615 9.32 0.00 41.70 2.12
3480 7825 6.518493 AGTTTGGTTCGTTGAACTATGAGTA 58.482 36.000 9.32 0.00 41.70 2.59
3481 7826 5.365619 AGTTTGGTTCGTTGAACTATGAGT 58.634 37.500 9.32 0.00 41.70 3.41
3482 7827 5.465390 TGAGTTTGGTTCGTTGAACTATGAG 59.535 40.000 9.32 0.00 41.70 2.90
3483 7828 5.361427 TGAGTTTGGTTCGTTGAACTATGA 58.639 37.500 9.32 0.00 41.70 2.15
3484 7829 5.666969 TGAGTTTGGTTCGTTGAACTATG 57.333 39.130 9.32 0.00 41.70 2.23
3485 7830 7.159372 ACTATGAGTTTGGTTCGTTGAACTAT 58.841 34.615 9.32 0.00 41.70 2.12
3486 7831 6.518493 ACTATGAGTTTGGTTCGTTGAACTA 58.482 36.000 9.32 0.78 41.70 2.24
3487 7832 5.365619 ACTATGAGTTTGGTTCGTTGAACT 58.634 37.500 9.32 0.00 41.70 3.01
3488 7833 5.668558 ACTATGAGTTTGGTTCGTTGAAC 57.331 39.130 1.09 1.09 41.32 3.18
3489 7834 5.818336 TGAACTATGAGTTTGGTTCGTTGAA 59.182 36.000 0.00 0.00 38.80 2.69
3490 7835 5.361427 TGAACTATGAGTTTGGTTCGTTGA 58.639 37.500 0.00 0.00 38.80 3.18
3491 7836 5.666969 TGAACTATGAGTTTGGTTCGTTG 57.333 39.130 0.00 0.00 38.80 4.10
3492 7837 5.995282 TGATGAACTATGAGTTTGGTTCGTT 59.005 36.000 0.00 0.00 38.80 3.85
3493 7838 5.408604 GTGATGAACTATGAGTTTGGTTCGT 59.591 40.000 0.00 0.00 38.80 3.85
3494 7839 5.408299 TGTGATGAACTATGAGTTTGGTTCG 59.592 40.000 0.00 0.00 38.80 3.95
3495 7840 6.204688 TGTGTGATGAACTATGAGTTTGGTTC 59.795 38.462 0.00 0.00 38.80 3.62
3496 7841 6.061441 TGTGTGATGAACTATGAGTTTGGTT 58.939 36.000 0.00 0.00 38.80 3.67
3497 7842 5.620206 TGTGTGATGAACTATGAGTTTGGT 58.380 37.500 0.00 0.00 38.80 3.67
3498 7843 6.373779 GTTGTGTGATGAACTATGAGTTTGG 58.626 40.000 0.00 0.00 38.80 3.28
3499 7844 6.073369 CGTTGTGTGATGAACTATGAGTTTG 58.927 40.000 0.00 0.00 38.80 2.93
3500 7845 5.989168 TCGTTGTGTGATGAACTATGAGTTT 59.011 36.000 0.00 0.00 38.80 2.66
3501 7846 5.538118 TCGTTGTGTGATGAACTATGAGTT 58.462 37.500 0.00 0.00 41.95 3.01
3502 7847 5.134202 TCGTTGTGTGATGAACTATGAGT 57.866 39.130 0.00 0.00 0.00 3.41
3503 7848 5.847715 GTTCGTTGTGTGATGAACTATGAG 58.152 41.667 3.42 0.00 40.65 2.90
3504 7849 5.839262 GTTCGTTGTGTGATGAACTATGA 57.161 39.130 3.42 0.00 40.65 2.15
3509 7854 3.120649 GCCTAGTTCGTTGTGTGATGAAC 60.121 47.826 2.57 2.57 42.93 3.18
3510 7855 3.064207 GCCTAGTTCGTTGTGTGATGAA 58.936 45.455 0.00 0.00 0.00 2.57
3511 7856 2.683968 GCCTAGTTCGTTGTGTGATGA 58.316 47.619 0.00 0.00 0.00 2.92
3512 7857 1.390123 CGCCTAGTTCGTTGTGTGATG 59.610 52.381 0.00 0.00 0.00 3.07
3513 7858 1.000506 ACGCCTAGTTCGTTGTGTGAT 59.999 47.619 1.97 0.00 36.72 3.06
3514 7859 0.386476 ACGCCTAGTTCGTTGTGTGA 59.614 50.000 1.97 0.00 36.72 3.58
3515 7860 1.214367 AACGCCTAGTTCGTTGTGTG 58.786 50.000 16.07 0.00 46.73 3.82
3516 7861 3.673173 AACGCCTAGTTCGTTGTGT 57.327 47.368 16.07 0.00 46.73 3.72
3530 7875 3.435186 GAGGCTCAAGGGCAACGC 61.435 66.667 10.25 0.00 43.56 4.84
3531 7876 2.747855 GGAGGCTCAAGGGCAACG 60.748 66.667 17.69 0.00 43.56 4.10
3532 7877 0.255890 TATGGAGGCTCAAGGGCAAC 59.744 55.000 17.69 0.00 43.56 4.17
3533 7878 0.548031 CTATGGAGGCTCAAGGGCAA 59.452 55.000 17.69 0.00 43.56 4.52
3534 7879 1.348008 CCTATGGAGGCTCAAGGGCA 61.348 60.000 17.69 4.77 43.56 5.36
3535 7880 1.453669 CCTATGGAGGCTCAAGGGC 59.546 63.158 17.69 0.00 35.54 5.19
3553 7898 2.205074 CAGCACGATCTGGTGGATAAC 58.795 52.381 13.34 0.00 43.57 1.89
3554 7899 1.473257 GCAGCACGATCTGGTGGATAA 60.473 52.381 19.17 0.00 46.77 1.75
3555 7900 0.104855 GCAGCACGATCTGGTGGATA 59.895 55.000 19.17 0.00 46.77 2.59
3556 7901 1.153289 GCAGCACGATCTGGTGGAT 60.153 57.895 19.17 0.00 46.77 3.41
3557 7902 2.265739 GCAGCACGATCTGGTGGA 59.734 61.111 19.17 0.00 46.77 4.02
3558 7903 2.046988 TGCAGCACGATCTGGTGG 60.047 61.111 19.17 7.46 46.77 4.61
3560 7905 0.671781 GAACTGCAGCACGATCTGGT 60.672 55.000 15.27 0.00 34.74 4.00
3561 7906 0.390866 AGAACTGCAGCACGATCTGG 60.391 55.000 15.27 0.00 34.74 3.86
3562 7907 1.128136 CAAGAACTGCAGCACGATCTG 59.872 52.381 15.27 0.00 37.15 2.90
3563 7908 1.001293 TCAAGAACTGCAGCACGATCT 59.999 47.619 15.27 7.17 0.00 2.75
3564 7909 1.432514 TCAAGAACTGCAGCACGATC 58.567 50.000 15.27 4.82 0.00 3.69
3565 7910 1.736126 CATCAAGAACTGCAGCACGAT 59.264 47.619 15.27 6.26 0.00 3.73
3566 7911 1.150827 CATCAAGAACTGCAGCACGA 58.849 50.000 15.27 3.92 0.00 4.35
3567 7912 0.453950 GCATCAAGAACTGCAGCACG 60.454 55.000 15.27 0.00 38.28 5.34
3568 7913 0.594602 TGCATCAAGAACTGCAGCAC 59.405 50.000 15.27 8.20 43.11 4.40
3569 7914 3.024431 TGCATCAAGAACTGCAGCA 57.976 47.368 15.27 0.00 43.11 4.41
3572 7917 1.241165 CAGGTGCATCAAGAACTGCA 58.759 50.000 0.00 0.00 45.60 4.41
3573 7918 1.068748 CACAGGTGCATCAAGAACTGC 60.069 52.381 0.00 0.00 38.87 4.40
3574 7919 1.538512 CCACAGGTGCATCAAGAACTG 59.461 52.381 0.00 0.00 0.00 3.16
3575 7920 1.546323 CCCACAGGTGCATCAAGAACT 60.546 52.381 0.00 0.00 0.00 3.01
3576 7921 0.883833 CCCACAGGTGCATCAAGAAC 59.116 55.000 0.00 0.00 0.00 3.01
3577 7922 3.344703 CCCACAGGTGCATCAAGAA 57.655 52.632 0.00 0.00 0.00 2.52
3586 7931 4.325729 GGAGATCCAAGACCCACAGGTG 62.326 59.091 0.00 0.00 40.79 4.00
3587 7932 2.180696 GGAGATCCAAGACCCACAGGT 61.181 57.143 0.00 0.00 42.53 4.00
3588 7933 0.543749 GGAGATCCAAGACCCACAGG 59.456 60.000 0.00 0.00 35.92 4.00
3589 7934 1.209019 CAGGAGATCCAAGACCCACAG 59.791 57.143 0.92 0.00 38.89 3.66
3590 7935 1.203300 TCAGGAGATCCAAGACCCACA 60.203 52.381 0.92 0.00 38.89 4.17
3591 7936 1.573108 TCAGGAGATCCAAGACCCAC 58.427 55.000 0.92 0.00 38.89 4.61
3592 7937 2.121948 CATCAGGAGATCCAAGACCCA 58.878 52.381 0.92 0.00 38.89 4.51
3593 7938 2.402564 TCATCAGGAGATCCAAGACCC 58.597 52.381 0.92 0.00 38.89 4.46
3594 7939 4.703379 ATTCATCAGGAGATCCAAGACC 57.297 45.455 0.92 0.00 38.89 3.85
3595 7940 7.448420 TCAATATTCATCAGGAGATCCAAGAC 58.552 38.462 0.92 0.00 38.89 3.01
3596 7941 7.256583 CCTCAATATTCATCAGGAGATCCAAGA 60.257 40.741 0.92 0.00 38.89 3.02
3597 7942 6.879993 CCTCAATATTCATCAGGAGATCCAAG 59.120 42.308 0.92 0.00 38.89 3.61
3598 7943 6.559921 TCCTCAATATTCATCAGGAGATCCAA 59.440 38.462 0.92 0.00 38.89 3.53
3599 7944 6.086775 TCCTCAATATTCATCAGGAGATCCA 58.913 40.000 0.92 0.00 38.89 3.41
3600 7945 6.617782 TCCTCAATATTCATCAGGAGATCC 57.382 41.667 0.00 0.00 30.20 3.36
3601 7946 7.104939 CCTTCCTCAATATTCATCAGGAGATC 58.895 42.308 0.00 0.00 34.68 2.75
3602 7947 6.522114 GCCTTCCTCAATATTCATCAGGAGAT 60.522 42.308 0.00 0.00 34.68 2.75
3603 7948 5.221803 GCCTTCCTCAATATTCATCAGGAGA 60.222 44.000 0.00 0.00 34.68 3.71
3604 7949 5.002516 GCCTTCCTCAATATTCATCAGGAG 58.997 45.833 0.00 0.00 34.68 3.69
3605 7950 4.413189 TGCCTTCCTCAATATTCATCAGGA 59.587 41.667 0.00 0.00 0.00 3.86
3606 7951 4.722220 TGCCTTCCTCAATATTCATCAGG 58.278 43.478 0.00 0.00 0.00 3.86
3607 7952 4.215827 GCTGCCTTCCTCAATATTCATCAG 59.784 45.833 0.00 0.00 0.00 2.90
3608 7953 4.139786 GCTGCCTTCCTCAATATTCATCA 58.860 43.478 0.00 0.00 0.00 3.07
3609 7954 3.505293 GGCTGCCTTCCTCAATATTCATC 59.495 47.826 12.43 0.00 0.00 2.92
3610 7955 3.494332 GGCTGCCTTCCTCAATATTCAT 58.506 45.455 12.43 0.00 0.00 2.57
3611 7956 2.423373 GGGCTGCCTTCCTCAATATTCA 60.423 50.000 19.68 0.00 0.00 2.57
3612 7957 2.234143 GGGCTGCCTTCCTCAATATTC 58.766 52.381 19.68 0.00 0.00 1.75
3613 7958 1.570501 TGGGCTGCCTTCCTCAATATT 59.429 47.619 19.68 0.00 0.00 1.28
3614 7959 1.225373 TGGGCTGCCTTCCTCAATAT 58.775 50.000 19.68 0.00 0.00 1.28
3615 7960 1.133699 CATGGGCTGCCTTCCTCAATA 60.134 52.381 19.68 0.00 0.00 1.90
3616 7961 0.396695 CATGGGCTGCCTTCCTCAAT 60.397 55.000 19.68 0.00 0.00 2.57
3617 7962 1.000521 CATGGGCTGCCTTCCTCAA 60.001 57.895 19.68 0.00 0.00 3.02
3618 7963 1.284111 ATCATGGGCTGCCTTCCTCA 61.284 55.000 19.68 7.89 0.00 3.86
3619 7964 0.822532 CATCATGGGCTGCCTTCCTC 60.823 60.000 19.68 1.35 0.00 3.71
3620 7965 1.229359 CATCATGGGCTGCCTTCCT 59.771 57.895 19.68 0.00 0.00 3.36
3621 7966 2.496291 GCATCATGGGCTGCCTTCC 61.496 63.158 19.68 2.17 32.15 3.46
3622 7967 3.126528 GCATCATGGGCTGCCTTC 58.873 61.111 19.68 2.99 32.15 3.46
3626 7971 3.772853 TACCGGCATCATGGGCTGC 62.773 63.158 0.00 9.61 36.31 5.25
3627 7972 1.893808 GTACCGGCATCATGGGCTG 60.894 63.158 0.00 10.94 37.39 4.85
3628 7973 1.708993 ATGTACCGGCATCATGGGCT 61.709 55.000 0.00 0.00 0.00 5.19
3629 7974 1.228245 ATGTACCGGCATCATGGGC 60.228 57.895 0.00 0.00 0.00 5.36
3630 7975 0.108396 TCATGTACCGGCATCATGGG 59.892 55.000 23.95 8.71 39.25 4.00
3631 7976 1.808343 CATCATGTACCGGCATCATGG 59.192 52.381 23.95 12.12 39.25 3.66
3632 7977 2.224784 CACATCATGTACCGGCATCATG 59.775 50.000 20.72 20.72 39.87 3.07
3633 7978 2.497138 CACATCATGTACCGGCATCAT 58.503 47.619 0.00 0.34 0.00 2.45
3634 7979 1.474855 CCACATCATGTACCGGCATCA 60.475 52.381 0.00 0.00 0.00 3.07
3635 7980 1.229428 CCACATCATGTACCGGCATC 58.771 55.000 0.00 0.00 0.00 3.91
3636 7981 0.179020 CCCACATCATGTACCGGCAT 60.179 55.000 0.00 0.00 0.00 4.40
3637 7982 1.223211 CCCACATCATGTACCGGCA 59.777 57.895 0.00 0.00 0.00 5.69
3638 7983 2.186826 GCCCACATCATGTACCGGC 61.187 63.158 0.00 6.89 31.87 6.13
3639 7984 0.393673 TTGCCCACATCATGTACCGG 60.394 55.000 0.00 0.00 0.00 5.28
3640 7985 1.016627 CTTGCCCACATCATGTACCG 58.983 55.000 0.00 0.00 0.00 4.02
3641 7986 2.292267 CTCTTGCCCACATCATGTACC 58.708 52.381 0.00 0.00 0.00 3.34
3642 7987 2.092968 TCCTCTTGCCCACATCATGTAC 60.093 50.000 0.00 0.00 0.00 2.90
3643 7988 2.092968 GTCCTCTTGCCCACATCATGTA 60.093 50.000 0.00 0.00 0.00 2.29
3644 7989 0.994247 TCCTCTTGCCCACATCATGT 59.006 50.000 0.00 0.00 0.00 3.21
3645 7990 1.386533 GTCCTCTTGCCCACATCATG 58.613 55.000 0.00 0.00 0.00 3.07
3646 7991 0.257039 GGTCCTCTTGCCCACATCAT 59.743 55.000 0.00 0.00 0.00 2.45
3647 7992 1.685224 GGTCCTCTTGCCCACATCA 59.315 57.895 0.00 0.00 0.00 3.07
3648 7993 1.077429 GGGTCCTCTTGCCCACATC 60.077 63.158 0.00 0.00 44.23 3.06
3649 7994 3.090765 GGGTCCTCTTGCCCACAT 58.909 61.111 0.00 0.00 44.23 3.21
3653 7998 1.920835 AGACAGGGTCCTCTTGCCC 60.921 63.158 0.00 0.00 45.16 5.36
3654 7999 1.298014 CAGACAGGGTCCTCTTGCC 59.702 63.158 0.00 0.00 32.18 4.52
3655 8000 1.267121 TACAGACAGGGTCCTCTTGC 58.733 55.000 0.00 0.00 32.18 4.01
3656 8001 5.453903 CCATATTACAGACAGGGTCCTCTTG 60.454 48.000 0.00 0.00 32.18 3.02
3657 8002 4.656112 CCATATTACAGACAGGGTCCTCTT 59.344 45.833 0.00 0.00 32.18 2.85
3658 8003 4.227197 CCATATTACAGACAGGGTCCTCT 58.773 47.826 0.00 0.00 32.18 3.69
3659 8004 3.967987 ACCATATTACAGACAGGGTCCTC 59.032 47.826 0.00 0.00 32.18 3.71
3660 8005 4.008916 ACCATATTACAGACAGGGTCCT 57.991 45.455 0.00 0.00 32.18 3.85
3661 8006 4.704965 GAACCATATTACAGACAGGGTCC 58.295 47.826 0.00 0.00 32.18 4.46
3662 8007 4.369182 CGAACCATATTACAGACAGGGTC 58.631 47.826 0.00 0.00 0.00 4.46
3663 8008 3.134081 CCGAACCATATTACAGACAGGGT 59.866 47.826 0.00 0.00 0.00 4.34
3664 8009 3.134081 ACCGAACCATATTACAGACAGGG 59.866 47.826 0.00 0.00 0.00 4.45
3665 8010 4.119862 CACCGAACCATATTACAGACAGG 58.880 47.826 0.00 0.00 0.00 4.00
3666 8011 4.755411 ACACCGAACCATATTACAGACAG 58.245 43.478 0.00 0.00 0.00 3.51
3667 8012 4.221041 TGACACCGAACCATATTACAGACA 59.779 41.667 0.00 0.00 0.00 3.41
3668 8013 4.751060 TGACACCGAACCATATTACAGAC 58.249 43.478 0.00 0.00 0.00 3.51
3669 8014 5.408880 TTGACACCGAACCATATTACAGA 57.591 39.130 0.00 0.00 0.00 3.41
3670 8015 5.445407 CGTTTGACACCGAACCATATTACAG 60.445 44.000 0.00 0.00 33.96 2.74
3671 8016 4.389382 CGTTTGACACCGAACCATATTACA 59.611 41.667 0.00 0.00 33.96 2.41
3672 8017 4.725737 GCGTTTGACACCGAACCATATTAC 60.726 45.833 0.00 0.00 33.96 1.89
3673 8018 3.371591 GCGTTTGACACCGAACCATATTA 59.628 43.478 0.00 0.00 33.96 0.98
3674 8019 2.160813 GCGTTTGACACCGAACCATATT 59.839 45.455 0.00 0.00 33.96 1.28
3675 8020 1.735571 GCGTTTGACACCGAACCATAT 59.264 47.619 0.00 0.00 33.96 1.78
3676 8021 1.149987 GCGTTTGACACCGAACCATA 58.850 50.000 0.00 0.00 33.96 2.74
3677 8022 0.534203 AGCGTTTGACACCGAACCAT 60.534 50.000 0.00 0.00 33.96 3.55
3678 8023 1.153329 AGCGTTTGACACCGAACCA 60.153 52.632 0.00 0.00 33.96 3.67
3679 8024 1.278637 CAGCGTTTGACACCGAACC 59.721 57.895 0.00 0.00 33.96 3.62
3680 8025 1.278637 CCAGCGTTTGACACCGAAC 59.721 57.895 0.00 0.00 34.12 3.95
3681 8026 2.539338 GCCAGCGTTTGACACCGAA 61.539 57.895 0.00 0.00 0.00 4.30
3682 8027 2.970324 GCCAGCGTTTGACACCGA 60.970 61.111 0.00 0.00 0.00 4.69
3683 8028 2.954753 GAGCCAGCGTTTGACACCG 61.955 63.158 0.00 0.00 0.00 4.94
3684 8029 1.166531 AAGAGCCAGCGTTTGACACC 61.167 55.000 0.00 0.00 0.00 4.16
3685 8030 0.235926 GAAGAGCCAGCGTTTGACAC 59.764 55.000 0.00 0.00 0.00 3.67
3686 8031 0.884704 GGAAGAGCCAGCGTTTGACA 60.885 55.000 0.00 0.00 36.34 3.58
3687 8032 0.603975 AGGAAGAGCCAGCGTTTGAC 60.604 55.000 0.00 0.00 40.02 3.18
3688 8033 0.603707 CAGGAAGAGCCAGCGTTTGA 60.604 55.000 0.00 0.00 40.02 2.69
3689 8034 1.871772 CAGGAAGAGCCAGCGTTTG 59.128 57.895 0.00 0.00 40.02 2.93
3690 8035 1.968540 GCAGGAAGAGCCAGCGTTT 60.969 57.895 0.00 0.00 39.53 3.60
3691 8036 2.359230 GCAGGAAGAGCCAGCGTT 60.359 61.111 0.00 0.00 39.53 4.84
3695 8040 2.511145 GCGAGCAGGAAGAGCCAG 60.511 66.667 0.00 0.00 40.02 4.85
3696 8041 2.999648 AGCGAGCAGGAAGAGCCA 61.000 61.111 0.00 0.00 40.02 4.75
3697 8042 2.202864 GAGCGAGCAGGAAGAGCC 60.203 66.667 0.00 0.00 0.00 4.70
3698 8043 2.891882 AGAGCGAGCAGGAAGAGC 59.108 61.111 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.