Multiple sequence alignment - TraesCS7D01G377300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G377300 chr7D 100.000 3330 0 0 951 4280 488779147 488782476 0.000000e+00 6150.0
1 TraesCS7D01G377300 chr7D 100.000 528 0 0 1 528 488778197 488778724 0.000000e+00 976.0
2 TraesCS7D01G377300 chr7D 90.625 64 6 0 1143 1206 182339102 182339039 7.630000e-13 86.1
3 TraesCS7D01G377300 chr7A 94.220 2699 105 24 951 3606 556155981 556158671 0.000000e+00 4072.0
4 TraesCS7D01G377300 chr7A 94.194 310 11 3 3975 4280 556159073 556159379 2.330000e-127 466.0
5 TraesCS7D01G377300 chr7A 87.264 212 23 3 3768 3976 556158676 556158886 5.530000e-59 239.0
6 TraesCS7D01G377300 chr7A 92.308 91 7 0 361 451 556155651 556155741 3.470000e-26 130.0
7 TraesCS7D01G377300 chr7B 92.454 2624 107 24 1228 3835 517307368 517309916 0.000000e+00 3664.0
8 TraesCS7D01G377300 chr7B 92.197 487 15 9 3801 4280 517309916 517310386 0.000000e+00 667.0
9 TraesCS7D01G377300 chr7B 98.565 209 2 1 951 1159 517306779 517306986 6.760000e-98 368.0
10 TraesCS7D01G377300 chr7B 90.323 62 6 0 1145 1206 150590276 150590215 9.860000e-12 82.4
11 TraesCS7D01G377300 chr5D 83.117 308 40 9 3 303 253541828 253542130 1.960000e-68 270.0
12 TraesCS7D01G377300 chr5D 82.857 315 40 12 1 306 458530522 458530213 1.960000e-68 270.0
13 TraesCS7D01G377300 chr5D 83.113 302 42 9 4 298 318448423 318448124 2.540000e-67 267.0
14 TraesCS7D01G377300 chr5D 80.286 350 47 18 1 335 92467214 92466872 1.190000e-60 244.0
15 TraesCS7D01G377300 chr6B 96.894 161 4 1 3606 3766 111688650 111688809 7.050000e-68 268.0
16 TraesCS7D01G377300 chr6B 93.714 175 8 3 3593 3766 111694163 111694335 4.250000e-65 259.0
17 TraesCS7D01G377300 chrUn 93.820 178 8 3 3593 3769 245704220 245704045 9.130000e-67 265.0
18 TraesCS7D01G377300 chrUn 94.286 175 7 3 3593 3766 348898998 348899170 9.130000e-67 265.0
19 TraesCS7D01G377300 chrUn 94.286 175 7 3 3593 3766 448431959 448432131 9.130000e-67 265.0
20 TraesCS7D01G377300 chrUn 96.273 161 5 1 3606 3766 67502869 67503028 3.280000e-66 263.0
21 TraesCS7D01G377300 chrUn 96.273 161 5 1 3606 3766 67512634 67512793 3.280000e-66 263.0
22 TraesCS7D01G377300 chr6D 83.729 295 32 11 1 285 146943345 146943633 9.130000e-67 265.0
23 TraesCS7D01G377300 chr5A 82.748 313 38 13 1 302 681208796 681208489 9.130000e-67 265.0
24 TraesCS7D01G377300 chr5A 93.714 175 8 3 3593 3766 706866747 706866919 4.250000e-65 259.0
25 TraesCS7D01G377300 chr1D 81.034 348 52 11 1 335 447448717 447448371 9.130000e-67 265.0
26 TraesCS7D01G377300 chr1D 81.818 308 47 8 1 303 58564284 58563981 2.560000e-62 250.0
27 TraesCS7D01G377300 chr4A 81.731 312 48 9 1 306 429402230 429402538 7.100000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G377300 chr7D 488778197 488782476 4279 False 3563.000000 6150 100.000000 1 4280 2 chr7D.!!$F1 4279
1 TraesCS7D01G377300 chr7A 556155651 556159379 3728 False 1226.750000 4072 91.996500 361 4280 4 chr7A.!!$F1 3919
2 TraesCS7D01G377300 chr7B 517306779 517310386 3607 False 1566.333333 3664 94.405333 951 4280 3 chr7B.!!$F1 3329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.032952 AGTTGCTCTTACGTGCCGAA 59.967 50.0 0.00 0.0 0.00 4.30 F
370 371 0.108804 GTGCCGAAGATCCAACTCGA 60.109 55.0 5.87 0.0 0.00 4.04 F
431 432 0.246635 CACTCGTCTCGTTTCCCCAT 59.753 55.0 0.00 0.0 0.00 4.00 F
525 526 0.393820 AGACCGCGGTTGGAAAAGTA 59.606 50.0 34.65 0.0 0.00 2.24 F
981 982 0.683504 TTCCGGCTGTCTCTACTCCC 60.684 60.0 0.00 0.0 0.00 4.30 F
1360 1689 0.683973 GCCTCCATGTGGATCGAGAT 59.316 55.0 1.54 0.0 44.46 2.75 F
3094 3459 0.030638 GCAGTTTGTGGCATCGTTGT 59.969 50.0 0.00 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1734 1.251251 AGCCTGCGCAAATTCTTCTT 58.749 45.000 13.05 0.00 37.52 2.52 R
1397 1735 1.251251 AAGCCTGCGCAAATTCTTCT 58.749 45.000 13.05 0.00 37.52 2.85 R
1619 1959 1.533625 AAGCAGCTCGCCATTACAAA 58.466 45.000 0.00 0.00 44.04 2.83 R
2503 2854 1.000274 GAAAAGCGCTCAACCATTGGT 60.000 47.619 12.06 1.37 37.65 3.67 R
2513 2864 3.241784 CGATCTTCTGTAGAAAAGCGCTC 59.758 47.826 12.06 0.00 36.22 5.03 R
3101 3470 0.673644 ATGCTCGGTACACAACTGCC 60.674 55.000 0.00 0.00 34.14 4.85 R
4059 4660 0.396435 TGTGGTGGTGATGTGGACTC 59.604 55.000 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.041976 ACGAGTGATCTATGGCGGG 58.958 57.895 0.00 0.00 0.00 6.13
19 20 0.467474 ACGAGTGATCTATGGCGGGA 60.467 55.000 0.00 0.00 0.00 5.14
20 21 0.039074 CGAGTGATCTATGGCGGGAC 60.039 60.000 0.00 0.00 0.00 4.46
33 34 2.750237 GGGACGCGCCATCCTTTT 60.750 61.111 21.31 0.00 38.95 2.27
34 35 2.340328 GGGACGCGCCATCCTTTTT 61.340 57.895 21.31 0.00 38.95 1.94
50 51 2.430546 TTTTTGTATGCCGGCAAGTG 57.569 45.000 36.33 0.00 0.00 3.16
51 52 1.323412 TTTTGTATGCCGGCAAGTGT 58.677 45.000 36.33 20.30 0.00 3.55
52 53 0.595588 TTTGTATGCCGGCAAGTGTG 59.404 50.000 36.33 0.00 0.00 3.82
63 64 1.582968 CAAGTGTGCTGGCATGACC 59.417 57.895 0.00 0.00 39.84 4.02
73 74 2.190313 GCATGACCATGGCCGAGA 59.810 61.111 13.04 0.00 39.16 4.04
74 75 1.228063 GCATGACCATGGCCGAGAT 60.228 57.895 13.04 0.00 39.16 2.75
75 76 1.512996 GCATGACCATGGCCGAGATG 61.513 60.000 13.04 8.05 39.16 2.90
76 77 0.887836 CATGACCATGGCCGAGATGG 60.888 60.000 17.09 17.09 45.26 3.51
85 86 3.499737 CCGAGATGGCGTGGTTGC 61.500 66.667 0.00 0.00 0.00 4.17
86 87 2.434884 CGAGATGGCGTGGTTGCT 60.435 61.111 0.00 0.00 34.52 3.91
87 88 2.456119 CGAGATGGCGTGGTTGCTC 61.456 63.158 0.00 0.00 34.52 4.26
88 89 2.045926 AGATGGCGTGGTTGCTCC 60.046 61.111 0.00 0.00 34.52 4.70
89 90 2.045926 GATGGCGTGGTTGCTCCT 60.046 61.111 0.00 0.00 37.07 3.69
90 91 2.360350 ATGGCGTGGTTGCTCCTG 60.360 61.111 0.80 0.00 37.07 3.86
91 92 2.803155 GATGGCGTGGTTGCTCCTGA 62.803 60.000 0.00 0.00 37.07 3.86
92 93 3.050275 GGCGTGGTTGCTCCTGAC 61.050 66.667 0.80 0.00 37.07 3.51
93 94 3.050275 GCGTGGTTGCTCCTGACC 61.050 66.667 0.80 0.00 37.07 4.02
94 95 2.743718 CGTGGTTGCTCCTGACCT 59.256 61.111 0.00 0.00 36.86 3.85
95 96 1.071471 CGTGGTTGCTCCTGACCTT 59.929 57.895 0.00 0.00 36.86 3.50
96 97 0.535102 CGTGGTTGCTCCTGACCTTT 60.535 55.000 0.00 0.00 36.86 3.11
97 98 1.692411 GTGGTTGCTCCTGACCTTTT 58.308 50.000 0.00 0.00 36.86 2.27
98 99 2.031870 GTGGTTGCTCCTGACCTTTTT 58.968 47.619 0.00 0.00 36.86 1.94
141 142 3.071837 TGGCATGGTGCTGGCATG 61.072 61.111 0.00 0.00 45.62 4.06
142 143 2.756691 GGCATGGTGCTGGCATGA 60.757 61.111 0.00 0.00 44.28 3.07
143 144 2.352821 GGCATGGTGCTGGCATGAA 61.353 57.895 0.00 0.00 44.28 2.57
144 145 1.153706 GCATGGTGCTGGCATGAAC 60.154 57.895 0.00 0.00 40.96 3.18
145 146 1.601419 GCATGGTGCTGGCATGAACT 61.601 55.000 0.00 0.00 40.96 3.01
146 147 0.892755 CATGGTGCTGGCATGAACTT 59.107 50.000 0.00 0.00 0.00 2.66
147 148 1.274167 CATGGTGCTGGCATGAACTTT 59.726 47.619 0.00 0.00 0.00 2.66
148 149 0.675083 TGGTGCTGGCATGAACTTTG 59.325 50.000 0.00 0.00 0.00 2.77
149 150 0.675633 GGTGCTGGCATGAACTTTGT 59.324 50.000 0.00 0.00 0.00 2.83
150 151 1.603678 GGTGCTGGCATGAACTTTGTG 60.604 52.381 0.00 0.00 0.00 3.33
151 152 1.337703 GTGCTGGCATGAACTTTGTGA 59.662 47.619 0.00 0.00 0.00 3.58
152 153 2.029649 GTGCTGGCATGAACTTTGTGAT 60.030 45.455 0.00 0.00 0.00 3.06
153 154 2.029739 TGCTGGCATGAACTTTGTGATG 60.030 45.455 0.00 0.00 0.00 3.07
154 155 2.673043 GCTGGCATGAACTTTGTGATGG 60.673 50.000 0.00 0.00 0.00 3.51
155 156 2.559668 CTGGCATGAACTTTGTGATGGT 59.440 45.455 0.00 0.00 0.00 3.55
156 157 3.758023 CTGGCATGAACTTTGTGATGGTA 59.242 43.478 0.00 0.00 0.00 3.25
157 158 4.343231 TGGCATGAACTTTGTGATGGTAT 58.657 39.130 0.00 0.00 0.00 2.73
158 159 4.771577 TGGCATGAACTTTGTGATGGTATT 59.228 37.500 0.00 0.00 0.00 1.89
159 160 5.245751 TGGCATGAACTTTGTGATGGTATTT 59.754 36.000 0.00 0.00 0.00 1.40
160 161 6.165577 GGCATGAACTTTGTGATGGTATTTT 58.834 36.000 0.00 0.00 0.00 1.82
161 162 6.650390 GGCATGAACTTTGTGATGGTATTTTT 59.350 34.615 0.00 0.00 0.00 1.94
162 163 7.360269 GGCATGAACTTTGTGATGGTATTTTTG 60.360 37.037 0.00 0.00 0.00 2.44
163 164 7.360269 GCATGAACTTTGTGATGGTATTTTTGG 60.360 37.037 0.00 0.00 0.00 3.28
164 165 7.353414 TGAACTTTGTGATGGTATTTTTGGA 57.647 32.000 0.00 0.00 0.00 3.53
165 166 7.432869 TGAACTTTGTGATGGTATTTTTGGAG 58.567 34.615 0.00 0.00 0.00 3.86
166 167 6.345096 ACTTTGTGATGGTATTTTTGGAGG 57.655 37.500 0.00 0.00 0.00 4.30
167 168 4.799564 TTGTGATGGTATTTTTGGAGGC 57.200 40.909 0.00 0.00 0.00 4.70
168 169 4.046286 TGTGATGGTATTTTTGGAGGCT 57.954 40.909 0.00 0.00 0.00 4.58
169 170 3.763360 TGTGATGGTATTTTTGGAGGCTG 59.237 43.478 0.00 0.00 0.00 4.85
170 171 3.131046 GTGATGGTATTTTTGGAGGCTGG 59.869 47.826 0.00 0.00 0.00 4.85
171 172 1.555967 TGGTATTTTTGGAGGCTGGC 58.444 50.000 0.00 0.00 0.00 4.85
172 173 1.203112 TGGTATTTTTGGAGGCTGGCA 60.203 47.619 3.38 0.00 0.00 4.92
173 174 2.110578 GGTATTTTTGGAGGCTGGCAT 58.889 47.619 3.38 0.00 0.00 4.40
174 175 2.501316 GGTATTTTTGGAGGCTGGCATT 59.499 45.455 3.38 0.00 0.00 3.56
175 176 2.773993 ATTTTTGGAGGCTGGCATTG 57.226 45.000 3.38 0.00 0.00 2.82
176 177 1.422531 TTTTTGGAGGCTGGCATTGT 58.577 45.000 3.38 0.00 0.00 2.71
177 178 2.300956 TTTTGGAGGCTGGCATTGTA 57.699 45.000 3.38 0.00 0.00 2.41
178 179 2.530460 TTTGGAGGCTGGCATTGTAT 57.470 45.000 3.38 0.00 0.00 2.29
179 180 1.766494 TTGGAGGCTGGCATTGTATG 58.234 50.000 3.38 0.00 0.00 2.39
188 189 3.831883 CATTGTATGCGGGCTGCT 58.168 55.556 20.66 7.66 46.63 4.24
189 190 1.357690 CATTGTATGCGGGCTGCTG 59.642 57.895 20.66 4.08 46.63 4.41
190 191 1.096967 CATTGTATGCGGGCTGCTGA 61.097 55.000 20.66 4.08 46.63 4.26
191 192 1.097547 ATTGTATGCGGGCTGCTGAC 61.098 55.000 20.66 16.81 46.63 3.51
192 193 2.125147 GTATGCGGGCTGCTGACA 60.125 61.111 20.66 0.00 46.63 3.58
193 194 1.524621 GTATGCGGGCTGCTGACAT 60.525 57.895 20.66 6.98 46.63 3.06
194 195 1.524393 TATGCGGGCTGCTGACATG 60.524 57.895 20.66 0.00 46.63 3.21
195 196 1.970352 TATGCGGGCTGCTGACATGA 61.970 55.000 20.66 0.00 46.63 3.07
196 197 2.515523 GCGGGCTGCTGACATGAT 60.516 61.111 11.99 0.00 41.73 2.45
197 198 2.831366 GCGGGCTGCTGACATGATG 61.831 63.158 11.99 0.00 41.73 3.07
198 199 2.831366 CGGGCTGCTGACATGATGC 61.831 63.158 0.00 0.74 0.00 3.91
199 200 2.487532 GGGCTGCTGACATGATGCC 61.488 63.158 0.00 3.42 39.61 4.40
200 201 2.713770 GCTGCTGACATGATGCCG 59.286 61.111 0.00 0.00 0.00 5.69
201 202 2.831366 GCTGCTGACATGATGCCGG 61.831 63.158 0.00 0.00 0.00 6.13
202 203 2.825387 TGCTGACATGATGCCGGC 60.825 61.111 22.73 22.73 0.00 6.13
203 204 2.825387 GCTGACATGATGCCGGCA 60.825 61.111 34.80 34.80 0.00 5.69
204 205 2.191513 GCTGACATGATGCCGGCAT 61.192 57.895 41.16 41.16 39.69 4.40
205 206 1.652563 CTGACATGATGCCGGCATG 59.347 57.895 44.96 33.57 46.49 4.06
206 207 0.816421 CTGACATGATGCCGGCATGA 60.816 55.000 44.96 38.01 44.49 3.07
207 208 0.394080 TGACATGATGCCGGCATGAA 60.394 50.000 44.96 31.72 44.49 2.57
208 209 0.956633 GACATGATGCCGGCATGAAT 59.043 50.000 44.96 32.41 44.49 2.57
209 210 1.338973 GACATGATGCCGGCATGAATT 59.661 47.619 44.96 27.53 44.49 2.17
210 211 1.758280 ACATGATGCCGGCATGAATTT 59.242 42.857 44.96 26.64 44.49 1.82
211 212 2.168936 ACATGATGCCGGCATGAATTTT 59.831 40.909 44.96 22.44 44.49 1.82
212 213 3.384146 ACATGATGCCGGCATGAATTTTA 59.616 39.130 44.96 19.66 44.49 1.52
213 214 3.713858 TGATGCCGGCATGAATTTTAG 57.286 42.857 44.96 0.00 36.70 1.85
214 215 2.361757 TGATGCCGGCATGAATTTTAGG 59.638 45.455 44.96 0.00 36.70 2.69
215 216 0.459489 TGCCGGCATGAATTTTAGGC 59.541 50.000 29.03 0.00 43.05 3.93
216 217 3.211670 TGCCGGCATGAATTTTAGGCG 62.212 52.381 29.03 11.94 45.44 5.52
217 218 3.549997 CGGCATGAATTTTAGGCGG 57.450 52.632 0.00 4.04 44.83 6.13
218 219 0.738389 CGGCATGAATTTTAGGCGGT 59.262 50.000 0.00 0.00 44.83 5.68
219 220 1.533756 CGGCATGAATTTTAGGCGGTG 60.534 52.381 0.00 0.00 44.83 4.94
220 221 1.748493 GGCATGAATTTTAGGCGGTGA 59.252 47.619 0.00 0.00 0.00 4.02
221 222 2.479560 GGCATGAATTTTAGGCGGTGAC 60.480 50.000 0.00 0.00 0.00 3.67
222 223 2.163412 GCATGAATTTTAGGCGGTGACA 59.837 45.455 0.00 0.00 0.00 3.58
223 224 3.181487 GCATGAATTTTAGGCGGTGACAT 60.181 43.478 0.00 0.00 0.00 3.06
224 225 4.353737 CATGAATTTTAGGCGGTGACATG 58.646 43.478 0.00 0.00 0.00 3.21
225 226 2.752354 TGAATTTTAGGCGGTGACATGG 59.248 45.455 0.00 0.00 0.00 3.66
226 227 1.762708 ATTTTAGGCGGTGACATGGG 58.237 50.000 0.00 0.00 0.00 4.00
227 228 0.963355 TTTTAGGCGGTGACATGGGC 60.963 55.000 0.00 0.00 0.00 5.36
228 229 3.673956 TTAGGCGGTGACATGGGCG 62.674 63.158 0.00 0.00 0.00 6.13
231 232 4.101790 GCGGTGACATGGGCGTTG 62.102 66.667 0.00 0.00 0.00 4.10
232 233 3.430862 CGGTGACATGGGCGTTGG 61.431 66.667 0.00 0.00 0.00 3.77
233 234 3.747976 GGTGACATGGGCGTTGGC 61.748 66.667 0.00 0.00 38.90 4.52
234 235 2.983030 GTGACATGGGCGTTGGCA 60.983 61.111 0.00 0.00 42.47 4.92
235 236 2.035469 TGACATGGGCGTTGGCAT 59.965 55.556 0.00 0.00 42.47 4.40
236 237 2.341875 TGACATGGGCGTTGGCATG 61.342 57.895 0.00 0.00 42.47 4.06
237 238 2.035469 ACATGGGCGTTGGCATGA 59.965 55.556 0.00 0.00 42.47 3.07
238 239 1.380246 ACATGGGCGTTGGCATGAT 60.380 52.632 0.00 0.00 42.47 2.45
239 240 1.361271 CATGGGCGTTGGCATGATC 59.639 57.895 0.00 0.00 42.47 2.92
240 241 1.105167 CATGGGCGTTGGCATGATCT 61.105 55.000 0.00 0.00 42.47 2.75
241 242 0.473755 ATGGGCGTTGGCATGATCTA 59.526 50.000 0.00 0.00 42.47 1.98
242 243 0.473755 TGGGCGTTGGCATGATCTAT 59.526 50.000 0.00 0.00 42.47 1.98
243 244 0.877071 GGGCGTTGGCATGATCTATG 59.123 55.000 0.00 0.00 42.47 2.23
244 245 1.543208 GGGCGTTGGCATGATCTATGA 60.543 52.381 0.00 0.00 42.47 2.15
245 246 1.532868 GGCGTTGGCATGATCTATGAC 59.467 52.381 0.00 6.66 45.62 3.06
246 247 1.532868 GCGTTGGCATGATCTATGACC 59.467 52.381 0.00 8.88 44.74 4.02
247 248 1.794701 CGTTGGCATGATCTATGACCG 59.205 52.381 0.00 3.19 44.74 4.79
248 249 1.532868 GTTGGCATGATCTATGACCGC 59.467 52.381 0.00 0.00 44.74 5.68
249 250 0.758123 TGGCATGATCTATGACCGCA 59.242 50.000 0.00 0.00 44.74 5.69
250 251 1.270465 TGGCATGATCTATGACCGCAG 60.270 52.381 0.00 0.00 44.74 5.18
251 252 1.436600 GCATGATCTATGACCGCAGG 58.563 55.000 0.00 0.00 45.87 4.85
252 253 2.536718 GCATGATCTATGACCGCAGGC 61.537 57.143 0.00 0.00 44.85 4.85
269 270 5.405269 CCGCAGGCCTTTTAAATTTATATGC 59.595 40.000 0.00 0.00 46.14 3.14
270 271 5.116983 CGCAGGCCTTTTAAATTTATATGCG 59.883 40.000 0.00 7.26 44.31 4.73
271 272 5.405269 GCAGGCCTTTTAAATTTATATGCGG 59.595 40.000 0.00 0.00 0.00 5.69
272 273 6.737346 GCAGGCCTTTTAAATTTATATGCGGA 60.737 38.462 0.00 0.00 0.00 5.54
273 274 6.640907 CAGGCCTTTTAAATTTATATGCGGAC 59.359 38.462 0.00 0.00 0.00 4.79
274 275 6.322712 AGGCCTTTTAAATTTATATGCGGACA 59.677 34.615 0.00 0.00 0.00 4.02
275 276 7.015195 AGGCCTTTTAAATTTATATGCGGACAT 59.985 33.333 0.00 0.00 40.49 3.06
276 277 7.116233 GGCCTTTTAAATTTATATGCGGACATG 59.884 37.037 0.00 0.00 37.04 3.21
277 278 7.865385 GCCTTTTAAATTTATATGCGGACATGA 59.135 33.333 0.00 0.00 37.04 3.07
278 279 9.743057 CCTTTTAAATTTATATGCGGACATGAA 57.257 29.630 0.00 0.00 37.04 2.57
295 296 4.801891 CATGAAATGGGTCTCTTGTGTTG 58.198 43.478 0.00 0.00 41.79 3.33
296 297 3.221771 TGAAATGGGTCTCTTGTGTTGG 58.778 45.455 0.00 0.00 0.00 3.77
297 298 2.292828 AATGGGTCTCTTGTGTTGGG 57.707 50.000 0.00 0.00 0.00 4.12
298 299 0.251341 ATGGGTCTCTTGTGTTGGGC 60.251 55.000 0.00 0.00 0.00 5.36
299 300 1.150536 GGGTCTCTTGTGTTGGGCA 59.849 57.895 0.00 0.00 0.00 5.36
307 308 3.522731 GTGTTGGGCACACGGCAA 61.523 61.111 0.00 0.00 46.51 4.52
308 309 3.069980 GTGTTGGGCACACGGCAAA 62.070 57.895 0.00 0.00 46.51 3.68
309 310 2.564553 GTGTTGGGCACACGGCAAAA 62.565 55.000 0.00 0.00 46.51 2.44
329 330 3.326109 AAAAACAGGACCGACGCG 58.674 55.556 3.53 3.53 0.00 6.01
348 349 2.740055 CGCGCTGGAGTTGCTCTT 60.740 61.111 5.56 0.00 0.00 2.85
349 350 1.446099 CGCGCTGGAGTTGCTCTTA 60.446 57.895 5.56 0.00 0.00 2.10
350 351 1.687494 CGCGCTGGAGTTGCTCTTAC 61.687 60.000 5.56 0.00 0.00 2.34
351 352 1.687494 GCGCTGGAGTTGCTCTTACG 61.687 60.000 0.00 0.00 0.00 3.18
352 353 0.388649 CGCTGGAGTTGCTCTTACGT 60.389 55.000 0.00 0.00 0.00 3.57
353 354 1.071605 GCTGGAGTTGCTCTTACGTG 58.928 55.000 0.00 0.00 0.00 4.49
354 355 1.071605 CTGGAGTTGCTCTTACGTGC 58.928 55.000 0.00 0.00 0.00 5.34
355 356 0.320421 TGGAGTTGCTCTTACGTGCC 60.320 55.000 0.00 0.00 0.00 5.01
356 357 1.352156 GGAGTTGCTCTTACGTGCCG 61.352 60.000 0.00 0.00 0.00 5.69
357 358 0.388134 GAGTTGCTCTTACGTGCCGA 60.388 55.000 0.00 0.00 0.00 5.54
358 359 0.032952 AGTTGCTCTTACGTGCCGAA 59.967 50.000 0.00 0.00 0.00 4.30
359 360 0.438830 GTTGCTCTTACGTGCCGAAG 59.561 55.000 0.00 0.00 0.00 3.79
360 361 0.315886 TTGCTCTTACGTGCCGAAGA 59.684 50.000 0.00 0.00 0.00 2.87
361 362 0.530744 TGCTCTTACGTGCCGAAGAT 59.469 50.000 0.00 0.00 31.45 2.40
362 363 1.201343 GCTCTTACGTGCCGAAGATC 58.799 55.000 0.00 0.00 31.45 2.75
363 364 1.841450 CTCTTACGTGCCGAAGATCC 58.159 55.000 0.00 0.00 31.45 3.36
364 365 1.134367 CTCTTACGTGCCGAAGATCCA 59.866 52.381 0.00 0.00 31.45 3.41
365 366 1.546923 TCTTACGTGCCGAAGATCCAA 59.453 47.619 0.00 0.00 0.00 3.53
366 367 1.659098 CTTACGTGCCGAAGATCCAAC 59.341 52.381 0.00 0.00 0.00 3.77
367 368 0.892755 TACGTGCCGAAGATCCAACT 59.107 50.000 0.00 0.00 0.00 3.16
368 369 0.389948 ACGTGCCGAAGATCCAACTC 60.390 55.000 1.50 0.00 0.00 3.01
369 370 1.413767 CGTGCCGAAGATCCAACTCG 61.414 60.000 0.00 0.00 0.00 4.18
370 371 0.108804 GTGCCGAAGATCCAACTCGA 60.109 55.000 5.87 0.00 0.00 4.04
371 372 0.824109 TGCCGAAGATCCAACTCGAT 59.176 50.000 5.87 0.00 0.00 3.59
417 418 0.320374 TCCCACTTGTAAGCCACTCG 59.680 55.000 0.00 0.00 0.00 4.18
421 422 2.329379 CACTTGTAAGCCACTCGTCTC 58.671 52.381 0.00 0.00 0.00 3.36
424 425 0.956633 TGTAAGCCACTCGTCTCGTT 59.043 50.000 0.00 0.00 0.00 3.85
431 432 0.246635 CACTCGTCTCGTTTCCCCAT 59.753 55.000 0.00 0.00 0.00 4.00
450 451 5.072741 CCCATTTTTCTTCTTCCTCTGTCA 58.927 41.667 0.00 0.00 0.00 3.58
451 452 5.048434 CCCATTTTTCTTCTTCCTCTGTCAC 60.048 44.000 0.00 0.00 0.00 3.67
452 453 5.532406 CCATTTTTCTTCTTCCTCTGTCACA 59.468 40.000 0.00 0.00 0.00 3.58
453 454 6.433766 CATTTTTCTTCTTCCTCTGTCACAC 58.566 40.000 0.00 0.00 0.00 3.82
454 455 4.753516 TTTCTTCTTCCTCTGTCACACA 57.246 40.909 0.00 0.00 0.00 3.72
455 456 3.735237 TCTTCTTCCTCTGTCACACAC 57.265 47.619 0.00 0.00 0.00 3.82
456 457 3.031013 TCTTCTTCCTCTGTCACACACA 58.969 45.455 0.00 0.00 0.00 3.72
457 458 3.643320 TCTTCTTCCTCTGTCACACACAT 59.357 43.478 0.00 0.00 33.23 3.21
458 459 4.832823 TCTTCTTCCTCTGTCACACACATA 59.167 41.667 0.00 0.00 33.23 2.29
459 460 5.481824 TCTTCTTCCTCTGTCACACACATAT 59.518 40.000 0.00 0.00 33.23 1.78
460 461 6.663523 TCTTCTTCCTCTGTCACACACATATA 59.336 38.462 0.00 0.00 33.23 0.86
461 462 7.343057 TCTTCTTCCTCTGTCACACACATATAT 59.657 37.037 0.00 0.00 33.23 0.86
462 463 8.533569 TTCTTCCTCTGTCACACACATATATA 57.466 34.615 0.00 0.00 33.23 0.86
463 464 8.712228 TCTTCCTCTGTCACACACATATATAT 57.288 34.615 0.00 0.00 33.23 0.86
464 465 9.807921 TCTTCCTCTGTCACACACATATATATA 57.192 33.333 0.00 0.00 33.23 0.86
515 516 2.587753 CACAACACAGACCGCGGT 60.588 61.111 34.89 34.89 0.00 5.68
516 517 2.177580 CACAACACAGACCGCGGTT 61.178 57.895 34.65 19.39 0.00 4.44
518 519 2.590575 AACACAGACCGCGGTTGG 60.591 61.111 34.65 28.09 0.00 3.77
519 520 3.096633 AACACAGACCGCGGTTGGA 62.097 57.895 34.65 0.00 0.00 3.53
520 521 2.280524 CACAGACCGCGGTTGGAA 60.281 61.111 34.65 0.00 0.00 3.53
521 522 1.890041 CACAGACCGCGGTTGGAAA 60.890 57.895 34.65 0.00 0.00 3.13
522 523 1.153127 ACAGACCGCGGTTGGAAAA 60.153 52.632 34.65 0.00 0.00 2.29
523 524 1.164041 ACAGACCGCGGTTGGAAAAG 61.164 55.000 34.65 18.33 0.00 2.27
524 525 1.147600 AGACCGCGGTTGGAAAAGT 59.852 52.632 34.65 5.28 0.00 2.66
525 526 0.393820 AGACCGCGGTTGGAAAAGTA 59.606 50.000 34.65 0.00 0.00 2.24
526 527 1.202675 AGACCGCGGTTGGAAAAGTAA 60.203 47.619 34.65 0.00 0.00 2.24
527 528 1.603326 GACCGCGGTTGGAAAAGTAAA 59.397 47.619 34.65 0.00 0.00 2.01
981 982 0.683504 TTCCGGCTGTCTCTACTCCC 60.684 60.000 0.00 0.00 0.00 4.30
1023 1028 4.070552 GCGTGGTTCTCCGGCTCT 62.071 66.667 0.00 0.00 36.30 4.09
1208 1219 1.226030 ACCTTCGGCGTGTAAGCAAC 61.226 55.000 6.85 0.00 39.27 4.17
1316 1640 2.159114 ACCGGTGCCATGAATAAATTGC 60.159 45.455 6.12 0.00 0.00 3.56
1324 1653 6.016777 GTGCCATGAATAAATTGCTAGTAGCT 60.017 38.462 22.34 5.33 42.97 3.32
1360 1689 0.683973 GCCTCCATGTGGATCGAGAT 59.316 55.000 1.54 0.00 44.46 2.75
1392 1730 4.808364 TGCTGTTTCTTTTTGGTTACATGC 59.192 37.500 0.00 0.00 0.00 4.06
1396 1734 6.100004 TGTTTCTTTTTGGTTACATGCGAAA 58.900 32.000 0.00 0.00 0.00 3.46
1397 1735 6.590292 TGTTTCTTTTTGGTTACATGCGAAAA 59.410 30.769 0.00 0.00 0.00 2.29
1398 1736 6.820470 TTCTTTTTGGTTACATGCGAAAAG 57.180 33.333 13.36 13.36 36.14 2.27
1399 1737 6.137794 TCTTTTTGGTTACATGCGAAAAGA 57.862 33.333 16.26 16.26 39.44 2.52
1471 1809 6.128486 TCTTAGCATTGGCCAATTAGATCAA 58.872 36.000 28.68 14.49 42.56 2.57
1489 1827 3.861840 TCAATCTTAGCCAGCACTGTAC 58.138 45.455 0.00 0.00 0.00 2.90
1493 1831 3.165875 TCTTAGCCAGCACTGTACTTCT 58.834 45.455 0.00 0.00 0.00 2.85
1496 1834 1.974236 AGCCAGCACTGTACTTCTTCT 59.026 47.619 0.00 0.00 0.00 2.85
1563 1901 2.024176 TGGGCTGAATTAGTCGCTTC 57.976 50.000 0.00 0.00 0.00 3.86
1705 2052 8.436046 AAAGCAATTTGAAAAGCTAAACATCA 57.564 26.923 8.34 0.00 36.07 3.07
1740 2087 9.658799 CTTCAAGATTAACTAGAGGAACAATCA 57.341 33.333 0.00 0.00 0.00 2.57
2010 2357 6.162777 GGTAATAATGCCTCAAAAGTTTGCA 58.837 36.000 1.32 1.32 38.05 4.08
2223 2570 6.676950 TCTATTTTACCACAAACTGCACATG 58.323 36.000 0.00 0.00 0.00 3.21
2435 2786 6.097839 AGCATGTTCTTGAGGCATTGATAATT 59.902 34.615 0.00 0.00 0.00 1.40
2436 2787 6.759827 GCATGTTCTTGAGGCATTGATAATTT 59.240 34.615 0.00 0.00 0.00 1.82
2437 2788 7.254319 GCATGTTCTTGAGGCATTGATAATTTG 60.254 37.037 0.00 0.00 0.00 2.32
2513 2864 7.377398 TGTCAATGATTTTCTACCAATGGTTG 58.623 34.615 11.41 9.23 37.09 3.77
2572 2923 4.433186 TTATTGTTCCATGTCAAAGGCG 57.567 40.909 0.00 0.00 0.00 5.52
2685 3036 7.391833 GCACATTTTGGGTTTTATTTATTCCCA 59.608 33.333 0.00 0.00 45.20 4.37
2686 3037 9.460019 CACATTTTGGGTTTTATTTATTCCCAT 57.540 29.630 2.00 0.00 45.98 4.00
2824 3178 9.927668 ATATGTTTTTGGTACATTTTCTGAAGG 57.072 29.630 0.00 0.00 39.30 3.46
2930 3286 6.422400 GCTCCATAGCTACATACTTTCTGTTC 59.578 42.308 0.00 0.00 45.85 3.18
3094 3459 0.030638 GCAGTTTGTGGCATCGTTGT 59.969 50.000 0.00 0.00 0.00 3.32
3101 3470 0.238289 GTGGCATCGTTGTTCTGGTG 59.762 55.000 0.00 0.00 0.00 4.17
3109 3478 1.102978 GTTGTTCTGGTGGCAGTTGT 58.897 50.000 0.00 0.00 0.00 3.32
3213 3583 2.940514 TCTCATACTTCCCTGGTGGA 57.059 50.000 0.00 0.00 43.18 4.02
3281 3651 2.590007 ATGCTTCGGGCGATGAGC 60.590 61.111 0.00 0.00 45.43 4.26
3322 3692 0.612229 CCATCTGTCTCAGCCTGTGT 59.388 55.000 0.00 0.00 0.00 3.72
3558 3929 4.202050 GGAATGTTGTGGTATGATGCCTTC 60.202 45.833 0.30 0.00 0.00 3.46
3580 3951 8.237949 CCTTCTATTCGATCTTGTATCGTGTAT 58.762 37.037 7.22 3.53 41.77 2.29
3619 3990 5.580022 ACATTACCCTTATTGCCTCAAACT 58.420 37.500 0.00 0.00 0.00 2.66
3621 3992 6.152831 ACATTACCCTTATTGCCTCAAACTTC 59.847 38.462 0.00 0.00 0.00 3.01
3655 4026 2.029739 GGCGATAGTCCCTCTAAGAAGC 60.030 54.545 0.00 0.00 39.35 3.86
3662 4033 2.035632 TCCCTCTAAGAAGCTAGCTGC 58.964 52.381 20.16 17.84 43.29 5.25
3676 4047 3.160047 CTGCGGAGGGATGGCTCT 61.160 66.667 0.00 0.00 0.00 4.09
3678 4049 3.474570 GCGGAGGGATGGCTCTGT 61.475 66.667 0.00 0.00 0.00 3.41
3704 4075 1.190643 AGTTAGCAGGCTGAGGTCTC 58.809 55.000 20.86 0.00 0.00 3.36
3709 4080 1.674057 CAGGCTGAGGTCTCCGTTT 59.326 57.895 9.42 0.00 0.00 3.60
3753 4124 1.683790 CGCTCCGCCAACTAAGAACG 61.684 60.000 0.00 0.00 0.00 3.95
3766 4137 1.647545 AAGAACGGCCATGCATCACG 61.648 55.000 2.24 4.30 0.00 4.35
3767 4138 2.046411 AACGGCCATGCATCACGA 60.046 55.556 17.79 0.00 0.00 4.35
3769 4140 2.512286 CGGCCATGCATCACGACT 60.512 61.111 2.24 0.00 0.00 4.18
3770 4141 2.108514 CGGCCATGCATCACGACTT 61.109 57.895 2.24 0.00 0.00 3.01
3772 4143 0.657840 GGCCATGCATCACGACTTAC 59.342 55.000 0.00 0.00 0.00 2.34
3773 4144 0.657840 GCCATGCATCACGACTTACC 59.342 55.000 0.00 0.00 0.00 2.85
3774 4145 0.930310 CCATGCATCACGACTTACCG 59.070 55.000 0.00 0.00 0.00 4.02
3776 4147 2.267426 CATGCATCACGACTTACCGAA 58.733 47.619 0.00 0.00 0.00 4.30
3777 4148 2.442212 TGCATCACGACTTACCGAAA 57.558 45.000 0.00 0.00 0.00 3.46
3778 4149 2.756829 TGCATCACGACTTACCGAAAA 58.243 42.857 0.00 0.00 0.00 2.29
3779 4150 3.331150 TGCATCACGACTTACCGAAAAT 58.669 40.909 0.00 0.00 0.00 1.82
3787 4158 2.681344 GACTTACCGAAAATTGGGCGAT 59.319 45.455 0.00 0.00 0.00 4.58
3818 4189 0.529378 GCCCTGGACTGCATCAAAAG 59.471 55.000 0.00 0.00 0.00 2.27
4026 4627 6.809689 TGATACATTCGTGTCGTGTAAGAAAT 59.190 34.615 0.00 0.00 36.11 2.17
4059 4660 1.134401 ACGTTCACCCTGCATGGATAG 60.134 52.381 15.66 4.47 38.35 2.08
4137 4741 5.738619 TGGTGTCTACATGTATGTGTTCT 57.261 39.130 5.91 0.00 41.89 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.039074 GTCCCGCCATAGATCACTCG 60.039 60.000 0.00 0.00 0.00 4.18
2 3 0.039074 CGTCCCGCCATAGATCACTC 60.039 60.000 0.00 0.00 0.00 3.51
3 4 2.041976 CGTCCCGCCATAGATCACT 58.958 57.895 0.00 0.00 0.00 3.41
4 5 4.655527 CGTCCCGCCATAGATCAC 57.344 61.111 0.00 0.00 0.00 3.06
16 17 2.340328 AAAAAGGATGGCGCGTCCC 61.340 57.895 22.36 13.39 40.21 4.46
17 18 3.274067 AAAAAGGATGGCGCGTCC 58.726 55.556 19.49 19.49 39.68 4.79
31 32 1.683917 ACACTTGCCGGCATACAAAAA 59.316 42.857 33.25 12.89 0.00 1.94
32 33 1.000827 CACACTTGCCGGCATACAAAA 60.001 47.619 33.25 13.76 0.00 2.44
33 34 0.595588 CACACTTGCCGGCATACAAA 59.404 50.000 33.25 14.63 0.00 2.83
34 35 1.861542 GCACACTTGCCGGCATACAA 61.862 55.000 33.25 15.08 43.66 2.41
35 36 2.331893 GCACACTTGCCGGCATACA 61.332 57.895 33.25 15.52 43.66 2.29
36 37 2.485122 GCACACTTGCCGGCATAC 59.515 61.111 33.25 12.41 43.66 2.39
45 46 1.174078 TGGTCATGCCAGCACACTTG 61.174 55.000 4.93 0.00 43.61 3.16
46 47 1.151221 TGGTCATGCCAGCACACTT 59.849 52.632 4.93 0.00 43.61 3.16
47 48 2.838360 TGGTCATGCCAGCACACT 59.162 55.556 4.93 0.00 43.61 3.55
55 56 2.687418 ATCTCGGCCATGGTCATGCC 62.687 60.000 18.31 8.56 37.49 4.40
56 57 1.228063 ATCTCGGCCATGGTCATGC 60.228 57.895 18.31 0.00 37.49 4.06
57 58 0.887836 CCATCTCGGCCATGGTCATG 60.888 60.000 18.31 12.44 36.74 3.07
58 59 1.453235 CCATCTCGGCCATGGTCAT 59.547 57.895 18.31 0.00 36.74 3.06
59 60 2.910360 CCATCTCGGCCATGGTCA 59.090 61.111 18.31 2.57 36.74 4.02
68 69 3.499737 GCAACCACGCCATCTCGG 61.500 66.667 0.00 0.00 38.11 4.63
69 70 2.434884 AGCAACCACGCCATCTCG 60.435 61.111 0.00 0.00 0.00 4.04
70 71 2.109126 GGAGCAACCACGCCATCTC 61.109 63.158 0.00 0.00 38.79 2.75
71 72 2.045926 GGAGCAACCACGCCATCT 60.046 61.111 0.00 0.00 38.79 2.90
72 73 2.045926 AGGAGCAACCACGCCATC 60.046 61.111 2.96 0.00 42.04 3.51
73 74 2.360350 CAGGAGCAACCACGCCAT 60.360 61.111 2.96 0.00 42.04 4.40
74 75 3.555324 TCAGGAGCAACCACGCCA 61.555 61.111 2.96 0.00 42.04 5.69
75 76 3.050275 GTCAGGAGCAACCACGCC 61.050 66.667 2.96 0.00 42.04 5.68
76 77 3.050275 GGTCAGGAGCAACCACGC 61.050 66.667 2.96 0.00 42.04 5.34
77 78 0.535102 AAAGGTCAGGAGCAACCACG 60.535 55.000 0.97 0.00 42.04 4.94
78 79 1.692411 AAAAGGTCAGGAGCAACCAC 58.308 50.000 0.97 0.00 42.04 4.16
79 80 2.452600 AAAAAGGTCAGGAGCAACCA 57.547 45.000 0.97 0.00 42.04 3.67
96 97 2.686235 GCACACATGCCAGCATAAAAA 58.314 42.857 4.52 0.00 46.97 1.94
97 98 2.367030 GCACACATGCCAGCATAAAA 57.633 45.000 4.52 0.00 46.97 1.52
123 124 2.758327 ATGCCAGCACCATGCCAG 60.758 61.111 0.00 0.00 46.52 4.85
124 125 3.071837 CATGCCAGCACCATGCCA 61.072 61.111 0.00 0.00 46.52 4.92
125 126 2.352821 TTCATGCCAGCACCATGCC 61.353 57.895 0.00 0.00 46.52 4.40
126 127 1.153706 GTTCATGCCAGCACCATGC 60.154 57.895 0.00 0.00 45.46 4.06
127 128 0.892755 AAGTTCATGCCAGCACCATG 59.107 50.000 0.00 5.26 41.03 3.66
128 129 1.274167 CAAAGTTCATGCCAGCACCAT 59.726 47.619 0.00 0.00 0.00 3.55
129 130 0.675083 CAAAGTTCATGCCAGCACCA 59.325 50.000 0.00 0.00 0.00 4.17
130 131 0.675633 ACAAAGTTCATGCCAGCACC 59.324 50.000 0.00 0.00 0.00 5.01
131 132 1.337703 TCACAAAGTTCATGCCAGCAC 59.662 47.619 0.00 0.00 0.00 4.40
132 133 1.689984 TCACAAAGTTCATGCCAGCA 58.310 45.000 0.00 0.00 0.00 4.41
133 134 2.602878 CATCACAAAGTTCATGCCAGC 58.397 47.619 0.00 0.00 0.00 4.85
134 135 2.559668 ACCATCACAAAGTTCATGCCAG 59.440 45.455 0.00 0.00 0.00 4.85
135 136 2.596346 ACCATCACAAAGTTCATGCCA 58.404 42.857 0.00 0.00 0.00 4.92
136 137 4.989279 ATACCATCACAAAGTTCATGCC 57.011 40.909 0.00 0.00 0.00 4.40
137 138 7.360269 CCAAAAATACCATCACAAAGTTCATGC 60.360 37.037 0.00 0.00 0.00 4.06
138 139 7.871973 TCCAAAAATACCATCACAAAGTTCATG 59.128 33.333 0.00 0.00 0.00 3.07
139 140 7.961351 TCCAAAAATACCATCACAAAGTTCAT 58.039 30.769 0.00 0.00 0.00 2.57
140 141 7.353414 TCCAAAAATACCATCACAAAGTTCA 57.647 32.000 0.00 0.00 0.00 3.18
141 142 6.868339 CCTCCAAAAATACCATCACAAAGTTC 59.132 38.462 0.00 0.00 0.00 3.01
142 143 6.741240 GCCTCCAAAAATACCATCACAAAGTT 60.741 38.462 0.00 0.00 0.00 2.66
143 144 5.279456 GCCTCCAAAAATACCATCACAAAGT 60.279 40.000 0.00 0.00 0.00 2.66
144 145 5.047092 AGCCTCCAAAAATACCATCACAAAG 60.047 40.000 0.00 0.00 0.00 2.77
145 146 4.837860 AGCCTCCAAAAATACCATCACAAA 59.162 37.500 0.00 0.00 0.00 2.83
146 147 4.220382 CAGCCTCCAAAAATACCATCACAA 59.780 41.667 0.00 0.00 0.00 3.33
147 148 3.763360 CAGCCTCCAAAAATACCATCACA 59.237 43.478 0.00 0.00 0.00 3.58
148 149 3.131046 CCAGCCTCCAAAAATACCATCAC 59.869 47.826 0.00 0.00 0.00 3.06
149 150 3.364549 CCAGCCTCCAAAAATACCATCA 58.635 45.455 0.00 0.00 0.00 3.07
150 151 2.101415 GCCAGCCTCCAAAAATACCATC 59.899 50.000 0.00 0.00 0.00 3.51
151 152 2.110578 GCCAGCCTCCAAAAATACCAT 58.889 47.619 0.00 0.00 0.00 3.55
152 153 1.203112 TGCCAGCCTCCAAAAATACCA 60.203 47.619 0.00 0.00 0.00 3.25
153 154 1.555967 TGCCAGCCTCCAAAAATACC 58.444 50.000 0.00 0.00 0.00 2.73
154 155 3.055891 ACAATGCCAGCCTCCAAAAATAC 60.056 43.478 0.00 0.00 0.00 1.89
155 156 3.172339 ACAATGCCAGCCTCCAAAAATA 58.828 40.909 0.00 0.00 0.00 1.40
156 157 1.980036 ACAATGCCAGCCTCCAAAAAT 59.020 42.857 0.00 0.00 0.00 1.82
157 158 1.422531 ACAATGCCAGCCTCCAAAAA 58.577 45.000 0.00 0.00 0.00 1.94
158 159 2.300956 TACAATGCCAGCCTCCAAAA 57.699 45.000 0.00 0.00 0.00 2.44
159 160 2.101783 CATACAATGCCAGCCTCCAAA 58.898 47.619 0.00 0.00 0.00 3.28
160 161 1.766494 CATACAATGCCAGCCTCCAA 58.234 50.000 0.00 0.00 0.00 3.53
161 162 3.500331 CATACAATGCCAGCCTCCA 57.500 52.632 0.00 0.00 0.00 3.86
171 172 1.096967 TCAGCAGCCCGCATACAATG 61.097 55.000 0.00 0.00 46.13 2.82
172 173 1.097547 GTCAGCAGCCCGCATACAAT 61.098 55.000 0.00 0.00 46.13 2.71
173 174 1.745115 GTCAGCAGCCCGCATACAA 60.745 57.895 0.00 0.00 46.13 2.41
174 175 2.125147 GTCAGCAGCCCGCATACA 60.125 61.111 0.00 0.00 46.13 2.29
175 176 1.524621 ATGTCAGCAGCCCGCATAC 60.525 57.895 0.00 0.00 46.13 2.39
176 177 1.524393 CATGTCAGCAGCCCGCATA 60.524 57.895 0.00 0.00 46.13 3.14
177 178 2.619941 ATCATGTCAGCAGCCCGCAT 62.620 55.000 0.00 0.00 46.13 4.73
178 179 3.333899 ATCATGTCAGCAGCCCGCA 62.334 57.895 0.00 0.00 46.13 5.69
179 180 2.515523 ATCATGTCAGCAGCCCGC 60.516 61.111 0.00 0.00 42.91 6.13
180 181 2.831366 GCATCATGTCAGCAGCCCG 61.831 63.158 0.00 0.00 0.00 6.13
181 182 2.487532 GGCATCATGTCAGCAGCCC 61.488 63.158 8.53 0.00 36.17 5.19
182 183 2.831366 CGGCATCATGTCAGCAGCC 61.831 63.158 8.53 0.00 38.73 4.85
183 184 2.713770 CGGCATCATGTCAGCAGC 59.286 61.111 8.53 0.00 0.00 5.25
184 185 2.831366 GCCGGCATCATGTCAGCAG 61.831 63.158 24.80 5.02 0.00 4.24
185 186 2.825387 GCCGGCATCATGTCAGCA 60.825 61.111 24.80 0.00 0.00 4.41
186 187 2.191513 ATGCCGGCATCATGTCAGC 61.192 57.895 36.10 0.00 29.42 4.26
187 188 0.816421 TCATGCCGGCATCATGTCAG 60.816 55.000 38.60 24.74 41.40 3.51
188 189 0.394080 TTCATGCCGGCATCATGTCA 60.394 50.000 38.60 17.41 41.40 3.58
189 190 0.956633 ATTCATGCCGGCATCATGTC 59.043 50.000 38.60 0.89 41.40 3.06
190 191 1.405872 AATTCATGCCGGCATCATGT 58.594 45.000 38.60 21.23 41.40 3.21
191 192 2.519377 AAATTCATGCCGGCATCATG 57.481 45.000 38.60 28.85 41.87 3.07
192 193 3.006110 CCTAAAATTCATGCCGGCATCAT 59.994 43.478 38.60 28.47 33.90 2.45
193 194 2.361757 CCTAAAATTCATGCCGGCATCA 59.638 45.455 38.60 26.53 33.90 3.07
194 195 2.863704 GCCTAAAATTCATGCCGGCATC 60.864 50.000 38.60 19.45 36.16 3.91
195 196 1.069049 GCCTAAAATTCATGCCGGCAT 59.931 47.619 36.10 36.10 36.16 4.40
196 197 0.459489 GCCTAAAATTCATGCCGGCA 59.541 50.000 34.80 34.80 36.16 5.69
197 198 0.594796 CGCCTAAAATTCATGCCGGC 60.595 55.000 22.73 22.73 0.00 6.13
198 199 0.030638 CCGCCTAAAATTCATGCCGG 59.969 55.000 0.00 0.00 0.00 6.13
199 200 0.738389 ACCGCCTAAAATTCATGCCG 59.262 50.000 0.00 0.00 0.00 5.69
200 201 1.748493 TCACCGCCTAAAATTCATGCC 59.252 47.619 0.00 0.00 0.00 4.40
201 202 2.163412 TGTCACCGCCTAAAATTCATGC 59.837 45.455 0.00 0.00 0.00 4.06
202 203 4.353737 CATGTCACCGCCTAAAATTCATG 58.646 43.478 0.00 0.00 0.00 3.07
203 204 3.381272 CCATGTCACCGCCTAAAATTCAT 59.619 43.478 0.00 0.00 0.00 2.57
204 205 2.752354 CCATGTCACCGCCTAAAATTCA 59.248 45.455 0.00 0.00 0.00 2.57
205 206 2.099098 CCCATGTCACCGCCTAAAATTC 59.901 50.000 0.00 0.00 0.00 2.17
206 207 2.099405 CCCATGTCACCGCCTAAAATT 58.901 47.619 0.00 0.00 0.00 1.82
207 208 1.762708 CCCATGTCACCGCCTAAAAT 58.237 50.000 0.00 0.00 0.00 1.82
208 209 0.963355 GCCCATGTCACCGCCTAAAA 60.963 55.000 0.00 0.00 0.00 1.52
209 210 1.377987 GCCCATGTCACCGCCTAAA 60.378 57.895 0.00 0.00 0.00 1.85
210 211 2.270850 GCCCATGTCACCGCCTAA 59.729 61.111 0.00 0.00 0.00 2.69
211 212 4.155733 CGCCCATGTCACCGCCTA 62.156 66.667 0.00 0.00 0.00 3.93
214 215 4.101790 CAACGCCCATGTCACCGC 62.102 66.667 0.00 0.00 0.00 5.68
215 216 3.430862 CCAACGCCCATGTCACCG 61.431 66.667 0.00 0.00 0.00 4.94
216 217 3.747976 GCCAACGCCCATGTCACC 61.748 66.667 0.00 0.00 0.00 4.02
217 218 2.342650 ATGCCAACGCCCATGTCAC 61.343 57.895 0.00 0.00 0.00 3.67
218 219 2.035469 ATGCCAACGCCCATGTCA 59.965 55.556 0.00 0.00 0.00 3.58
219 220 1.386525 ATCATGCCAACGCCCATGTC 61.387 55.000 0.00 0.00 39.74 3.06
220 221 1.380246 ATCATGCCAACGCCCATGT 60.380 52.632 0.00 0.00 39.74 3.21
221 222 1.105167 AGATCATGCCAACGCCCATG 61.105 55.000 0.00 0.00 40.05 3.66
222 223 0.473755 TAGATCATGCCAACGCCCAT 59.526 50.000 0.00 0.00 0.00 4.00
223 224 0.473755 ATAGATCATGCCAACGCCCA 59.526 50.000 0.00 0.00 0.00 5.36
224 225 0.877071 CATAGATCATGCCAACGCCC 59.123 55.000 0.00 0.00 0.00 6.13
225 226 1.532868 GTCATAGATCATGCCAACGCC 59.467 52.381 0.00 0.00 34.35 5.68
226 227 1.532868 GGTCATAGATCATGCCAACGC 59.467 52.381 0.00 0.00 34.35 4.84
227 228 1.794701 CGGTCATAGATCATGCCAACG 59.205 52.381 0.00 0.00 34.35 4.10
228 229 1.532868 GCGGTCATAGATCATGCCAAC 59.467 52.381 0.00 0.00 34.35 3.77
229 230 1.140652 TGCGGTCATAGATCATGCCAA 59.859 47.619 0.00 0.00 34.35 4.52
230 231 0.758123 TGCGGTCATAGATCATGCCA 59.242 50.000 0.00 0.00 34.35 4.92
231 232 1.436600 CTGCGGTCATAGATCATGCC 58.563 55.000 0.00 2.82 34.35 4.40
232 233 1.436600 CCTGCGGTCATAGATCATGC 58.563 55.000 0.00 0.00 34.35 4.06
233 234 1.436600 GCCTGCGGTCATAGATCATG 58.563 55.000 0.00 0.00 35.81 3.07
234 235 0.322975 GGCCTGCGGTCATAGATCAT 59.677 55.000 0.00 0.00 0.00 2.45
235 236 0.760567 AGGCCTGCGGTCATAGATCA 60.761 55.000 3.11 0.00 0.00 2.92
236 237 0.394565 AAGGCCTGCGGTCATAGATC 59.605 55.000 5.69 0.00 0.00 2.75
237 238 0.839946 AAAGGCCTGCGGTCATAGAT 59.160 50.000 5.69 0.00 0.00 1.98
238 239 0.618458 AAAAGGCCTGCGGTCATAGA 59.382 50.000 5.69 0.00 0.00 1.98
239 240 2.325583 TAAAAGGCCTGCGGTCATAG 57.674 50.000 5.69 0.00 0.00 2.23
240 241 2.791347 TTAAAAGGCCTGCGGTCATA 57.209 45.000 5.69 0.00 0.00 2.15
241 242 1.917872 TTTAAAAGGCCTGCGGTCAT 58.082 45.000 5.69 0.00 0.00 3.06
242 243 1.917872 ATTTAAAAGGCCTGCGGTCA 58.082 45.000 5.69 0.00 0.00 4.02
243 244 3.313012 AAATTTAAAAGGCCTGCGGTC 57.687 42.857 5.69 0.00 0.00 4.79
244 245 6.512297 CATATAAATTTAAAAGGCCTGCGGT 58.488 36.000 5.69 0.00 0.00 5.68
245 246 5.405269 GCATATAAATTTAAAAGGCCTGCGG 59.595 40.000 5.69 0.00 0.00 5.69
246 247 5.116983 CGCATATAAATTTAAAAGGCCTGCG 59.883 40.000 5.69 9.18 41.01 5.18
247 248 5.405269 CCGCATATAAATTTAAAAGGCCTGC 59.595 40.000 5.69 0.00 0.00 4.85
248 249 6.640907 GTCCGCATATAAATTTAAAAGGCCTG 59.359 38.462 5.69 0.00 0.00 4.85
249 250 6.322712 TGTCCGCATATAAATTTAAAAGGCCT 59.677 34.615 0.00 0.00 0.00 5.19
250 251 6.508777 TGTCCGCATATAAATTTAAAAGGCC 58.491 36.000 1.21 0.00 0.00 5.19
251 252 7.865385 TCATGTCCGCATATAAATTTAAAAGGC 59.135 33.333 1.21 6.29 33.30 4.35
252 253 9.743057 TTCATGTCCGCATATAAATTTAAAAGG 57.257 29.630 1.21 2.72 33.30 3.11
256 257 9.689976 CCATTTCATGTCCGCATATAAATTTAA 57.310 29.630 1.21 0.00 32.32 1.52
257 258 8.303156 CCCATTTCATGTCCGCATATAAATTTA 58.697 33.333 0.00 0.00 32.32 1.40
258 259 7.153985 CCCATTTCATGTCCGCATATAAATTT 58.846 34.615 0.00 0.00 32.32 1.82
259 260 6.267471 ACCCATTTCATGTCCGCATATAAATT 59.733 34.615 0.00 0.00 32.32 1.82
260 261 5.774690 ACCCATTTCATGTCCGCATATAAAT 59.225 36.000 0.00 0.00 33.66 1.40
261 262 5.136828 ACCCATTTCATGTCCGCATATAAA 58.863 37.500 0.00 0.00 33.30 1.40
262 263 4.724399 ACCCATTTCATGTCCGCATATAA 58.276 39.130 0.00 0.00 33.30 0.98
263 264 4.041567 AGACCCATTTCATGTCCGCATATA 59.958 41.667 0.00 0.00 33.30 0.86
264 265 3.149196 GACCCATTTCATGTCCGCATAT 58.851 45.455 0.00 0.00 33.30 1.78
265 266 2.172505 AGACCCATTTCATGTCCGCATA 59.827 45.455 0.00 0.00 33.30 3.14
266 267 1.064463 AGACCCATTTCATGTCCGCAT 60.064 47.619 0.00 0.00 35.32 4.73
267 268 0.327924 AGACCCATTTCATGTCCGCA 59.672 50.000 0.00 0.00 0.00 5.69
268 269 1.017387 GAGACCCATTTCATGTCCGC 58.983 55.000 0.00 0.00 0.00 5.54
269 270 2.679837 CAAGAGACCCATTTCATGTCCG 59.320 50.000 0.00 0.00 0.00 4.79
270 271 3.441572 CACAAGAGACCCATTTCATGTCC 59.558 47.826 0.00 0.00 0.00 4.02
271 272 4.074970 ACACAAGAGACCCATTTCATGTC 58.925 43.478 0.00 0.00 0.00 3.06
272 273 4.104383 ACACAAGAGACCCATTTCATGT 57.896 40.909 0.00 0.00 0.00 3.21
273 274 4.321452 CCAACACAAGAGACCCATTTCATG 60.321 45.833 0.00 0.00 0.00 3.07
274 275 3.828451 CCAACACAAGAGACCCATTTCAT 59.172 43.478 0.00 0.00 0.00 2.57
275 276 3.221771 CCAACACAAGAGACCCATTTCA 58.778 45.455 0.00 0.00 0.00 2.69
276 277 2.558359 CCCAACACAAGAGACCCATTTC 59.442 50.000 0.00 0.00 0.00 2.17
277 278 2.597455 CCCAACACAAGAGACCCATTT 58.403 47.619 0.00 0.00 0.00 2.32
278 279 1.823250 GCCCAACACAAGAGACCCATT 60.823 52.381 0.00 0.00 0.00 3.16
279 280 0.251341 GCCCAACACAAGAGACCCAT 60.251 55.000 0.00 0.00 0.00 4.00
280 281 1.150536 GCCCAACACAAGAGACCCA 59.849 57.895 0.00 0.00 0.00 4.51
281 282 1.150536 TGCCCAACACAAGAGACCC 59.849 57.895 0.00 0.00 0.00 4.46
282 283 4.898607 TGCCCAACACAAGAGACC 57.101 55.556 0.00 0.00 0.00 3.85
291 292 1.888436 TTTTTGCCGTGTGCCCAACA 61.888 50.000 0.00 0.00 40.16 3.33
292 293 1.153549 TTTTTGCCGTGTGCCCAAC 60.154 52.632 0.00 0.00 40.16 3.77
293 294 3.298958 TTTTTGCCGTGTGCCCAA 58.701 50.000 0.00 0.00 40.16 4.12
312 313 2.248835 CCGCGTCGGTCCTGTTTTT 61.249 57.895 4.92 0.00 42.73 1.94
313 314 2.663852 CCGCGTCGGTCCTGTTTT 60.664 61.111 4.92 0.00 42.73 2.43
331 332 1.446099 TAAGAGCAACTCCAGCGCG 60.446 57.895 0.00 0.00 36.87 6.86
332 333 1.687494 CGTAAGAGCAACTCCAGCGC 61.687 60.000 0.00 0.00 43.02 5.92
333 334 0.388649 ACGTAAGAGCAACTCCAGCG 60.389 55.000 0.00 0.00 43.62 5.18
334 335 1.071605 CACGTAAGAGCAACTCCAGC 58.928 55.000 0.00 0.00 43.62 4.85
351 352 0.108804 TCGAGTTGGATCTTCGGCAC 60.109 55.000 0.00 0.00 0.00 5.01
352 353 0.824109 ATCGAGTTGGATCTTCGGCA 59.176 50.000 0.00 0.00 0.00 5.69
353 354 2.795175 TATCGAGTTGGATCTTCGGC 57.205 50.000 0.00 0.00 0.00 5.54
354 355 5.175856 GTCAAATATCGAGTTGGATCTTCGG 59.824 44.000 6.47 0.00 31.49 4.30
355 356 5.175856 GGTCAAATATCGAGTTGGATCTTCG 59.824 44.000 6.47 0.00 31.49 3.79
356 357 5.175856 CGGTCAAATATCGAGTTGGATCTTC 59.824 44.000 6.47 0.00 31.49 2.87
357 358 5.050490 CGGTCAAATATCGAGTTGGATCTT 58.950 41.667 6.47 0.00 31.49 2.40
358 359 4.501571 CCGGTCAAATATCGAGTTGGATCT 60.502 45.833 0.00 0.00 31.49 2.75
359 360 3.741344 CCGGTCAAATATCGAGTTGGATC 59.259 47.826 0.00 0.09 31.49 3.36
360 361 3.728845 CCGGTCAAATATCGAGTTGGAT 58.271 45.455 0.00 0.00 31.49 3.41
361 362 2.740580 GCCGGTCAAATATCGAGTTGGA 60.741 50.000 1.90 0.00 31.49 3.53
362 363 1.597663 GCCGGTCAAATATCGAGTTGG 59.402 52.381 1.90 0.00 31.49 3.77
363 364 2.285220 CAGCCGGTCAAATATCGAGTTG 59.715 50.000 1.90 0.00 31.82 3.16
364 365 2.167693 TCAGCCGGTCAAATATCGAGTT 59.832 45.455 1.90 0.00 0.00 3.01
365 366 1.754803 TCAGCCGGTCAAATATCGAGT 59.245 47.619 1.90 0.00 0.00 4.18
366 367 2.398498 CTCAGCCGGTCAAATATCGAG 58.602 52.381 1.90 0.00 0.00 4.04
367 368 1.068588 CCTCAGCCGGTCAAATATCGA 59.931 52.381 1.90 0.00 0.00 3.59
368 369 1.202533 ACCTCAGCCGGTCAAATATCG 60.203 52.381 1.90 0.00 29.14 2.92
369 370 2.213499 CACCTCAGCCGGTCAAATATC 58.787 52.381 1.90 0.00 34.29 1.63
370 371 1.134098 CCACCTCAGCCGGTCAAATAT 60.134 52.381 1.90 0.00 34.29 1.28
371 372 0.251916 CCACCTCAGCCGGTCAAATA 59.748 55.000 1.90 0.00 34.29 1.40
417 418 4.519350 AGAAGAAAAATGGGGAAACGAGAC 59.481 41.667 0.00 0.00 0.00 3.36
421 422 4.280929 AGGAAGAAGAAAAATGGGGAAACG 59.719 41.667 0.00 0.00 0.00 3.60
424 425 5.079643 CAGAGGAAGAAGAAAAATGGGGAA 58.920 41.667 0.00 0.00 0.00 3.97
431 432 5.354234 GTGTGTGACAGAGGAAGAAGAAAAA 59.646 40.000 0.00 0.00 0.00 1.94
480 481 9.625747 TGTGTTGTGTGATTTGGACATATATAT 57.374 29.630 0.00 0.00 0.00 0.86
481 482 9.108284 CTGTGTTGTGTGATTTGGACATATATA 57.892 33.333 0.00 0.00 0.00 0.86
482 483 7.828717 TCTGTGTTGTGTGATTTGGACATATAT 59.171 33.333 0.00 0.00 0.00 0.86
483 484 7.119116 GTCTGTGTTGTGTGATTTGGACATATA 59.881 37.037 0.00 0.00 0.00 0.86
959 960 2.957006 GGAGTAGAGACAGCCGGAAATA 59.043 50.000 5.05 0.00 0.00 1.40
1225 1236 2.604152 CCTAGGAGGAGGCGGAGT 59.396 66.667 1.05 0.00 37.67 3.85
1324 1653 2.415843 CGATCCGGGAAGCGCTAA 59.584 61.111 12.05 0.00 0.00 3.09
1360 1689 1.388547 AAGAAACAGCACCGAAGCAA 58.611 45.000 2.02 0.00 36.85 3.91
1392 1730 2.658325 CCTGCGCAAATTCTTCTTTTCG 59.342 45.455 13.05 0.00 0.00 3.46
1396 1734 1.251251 AGCCTGCGCAAATTCTTCTT 58.749 45.000 13.05 0.00 37.52 2.52
1397 1735 1.251251 AAGCCTGCGCAAATTCTTCT 58.749 45.000 13.05 0.00 37.52 2.85
1398 1736 2.070262 AAAGCCTGCGCAAATTCTTC 57.930 45.000 13.05 0.00 37.52 2.87
1399 1737 2.531522 AAAAGCCTGCGCAAATTCTT 57.468 40.000 13.05 9.31 37.52 2.52
1471 1809 3.772025 AGAAGTACAGTGCTGGCTAAGAT 59.228 43.478 4.11 0.00 34.19 2.40
1489 1827 6.813649 TCACGATTTGAGATAACCAGAAGAAG 59.186 38.462 0.00 0.00 0.00 2.85
1493 1831 7.102993 TCAATCACGATTTGAGATAACCAGAA 58.897 34.615 0.00 0.00 37.77 3.02
1496 1834 5.817296 CCTCAATCACGATTTGAGATAACCA 59.183 40.000 20.41 0.00 37.77 3.67
1619 1959 1.533625 AAGCAGCTCGCCATTACAAA 58.466 45.000 0.00 0.00 44.04 2.83
1694 2041 4.013267 AGAGCTGTTGTGATGTTTAGCT 57.987 40.909 0.00 0.00 43.52 3.32
1705 2052 7.671302 TCTAGTTAATCTTGAAGAGCTGTTGT 58.329 34.615 0.00 0.00 0.00 3.32
1740 2087 4.646492 GGTTTGGTCAATGCCATCTTCTAT 59.354 41.667 0.00 0.00 38.48 1.98
1743 2090 2.827921 AGGTTTGGTCAATGCCATCTTC 59.172 45.455 0.00 0.00 38.48 2.87
2010 2357 3.691118 CACATCCCATCGTGAAACAGATT 59.309 43.478 0.00 0.00 35.74 2.40
2276 2625 6.145371 CCCAGCAAAATGTTTACAATACACAC 59.855 38.462 0.00 0.00 0.00 3.82
2280 2629 6.919721 TCTCCCAGCAAAATGTTTACAATAC 58.080 36.000 0.00 0.00 0.00 1.89
2382 2731 9.290988 TGTTACTGTACAAATTTGACCATGTAT 57.709 29.630 24.64 2.15 31.57 2.29
2417 2766 7.649533 ACATCAAATTATCAATGCCTCAAGA 57.350 32.000 0.00 0.00 0.00 3.02
2435 2786 5.499313 TGGATGCTCACTTGATAACATCAA 58.501 37.500 14.24 1.91 46.30 2.57
2436 2787 5.101648 TGGATGCTCACTTGATAACATCA 57.898 39.130 14.24 0.00 36.49 3.07
2437 2788 5.121811 ACTGGATGCTCACTTGATAACATC 58.878 41.667 0.00 0.00 34.54 3.06
2503 2854 1.000274 GAAAAGCGCTCAACCATTGGT 60.000 47.619 12.06 1.37 37.65 3.67
2513 2864 3.241784 CGATCTTCTGTAGAAAAGCGCTC 59.758 47.826 12.06 0.00 36.22 5.03
2930 3286 4.522405 TCTCACCTGAAGACAAGAGAAGAG 59.478 45.833 0.00 0.00 30.96 2.85
2984 3349 0.833287 TAGCATCCAGAGAAGGGCAC 59.167 55.000 0.00 0.00 0.00 5.01
3094 3459 1.476110 GGTACACAACTGCCACCAGAA 60.476 52.381 0.00 0.00 41.77 3.02
3101 3470 0.673644 ATGCTCGGTACACAACTGCC 60.674 55.000 0.00 0.00 34.14 4.85
3109 3478 1.749063 AGTGATCGAATGCTCGGTACA 59.251 47.619 0.00 0.00 45.49 2.90
3135 3504 5.659048 AGAGTTTTGTTAGCTCGAAGTTG 57.341 39.130 0.00 0.00 34.69 3.16
3213 3583 4.660168 ACAGAAACTTCATTCCAGCAGAT 58.340 39.130 0.00 0.00 0.00 2.90
3281 3651 1.272490 TGAGAGCAACTAACGGGTGAG 59.728 52.381 0.00 0.00 33.74 3.51
3544 3915 5.481824 AGATCGAATAGAAGGCATCATACCA 59.518 40.000 0.00 0.00 0.00 3.25
3558 3929 7.201359 GGCAATACACGATACAAGATCGAATAG 60.201 40.741 13.45 3.71 43.59 1.73
3580 3951 4.461081 GGTAATGTCATGTAACCAAGGCAA 59.539 41.667 7.18 0.00 26.40 4.52
3655 4026 2.739784 CCATCCCTCCGCAGCTAG 59.260 66.667 0.00 0.00 0.00 3.42
3662 4033 1.821753 CTATACAGAGCCATCCCTCCG 59.178 57.143 0.00 0.00 32.17 4.63
3692 4063 1.122019 ACAAACGGAGACCTCAGCCT 61.122 55.000 0.00 0.00 0.00 4.58
3753 4124 0.657840 GTAAGTCGTGATGCATGGCC 59.342 55.000 2.46 0.00 0.00 5.36
3766 4137 2.078392 TCGCCCAATTTTCGGTAAGTC 58.922 47.619 0.00 0.00 0.00 3.01
3767 4138 2.188062 TCGCCCAATTTTCGGTAAGT 57.812 45.000 0.00 0.00 0.00 2.24
3769 4140 1.746220 CCATCGCCCAATTTTCGGTAA 59.254 47.619 0.00 0.00 0.00 2.85
3770 4141 1.340211 ACCATCGCCCAATTTTCGGTA 60.340 47.619 0.00 0.00 0.00 4.02
3772 4143 1.064952 GTACCATCGCCCAATTTTCGG 59.935 52.381 0.00 0.00 0.00 4.30
3773 4144 1.740585 TGTACCATCGCCCAATTTTCG 59.259 47.619 0.00 0.00 0.00 3.46
3774 4145 2.159296 GGTGTACCATCGCCCAATTTTC 60.159 50.000 0.00 0.00 35.64 2.29
3776 4147 1.272203 TGGTGTACCATCGCCCAATTT 60.272 47.619 0.00 0.00 42.01 1.82
3777 4148 0.329931 TGGTGTACCATCGCCCAATT 59.670 50.000 0.00 0.00 42.01 2.32
3778 4149 0.329931 TTGGTGTACCATCGCCCAAT 59.670 50.000 4.31 0.00 46.97 3.16
3779 4150 0.110678 TTTGGTGTACCATCGCCCAA 59.889 50.000 4.31 0.00 46.97 4.12
3787 4158 1.063070 TCCAGGGCTTTGGTGTACCA 61.063 55.000 0.00 0.00 45.94 3.25
4059 4660 0.396435 TGTGGTGGTGATGTGGACTC 59.604 55.000 0.00 0.00 0.00 3.36
4069 4670 1.134175 GAACAAGTGGTTGTGGTGGTG 59.866 52.381 0.00 0.00 46.68 4.17
4070 4671 1.272203 TGAACAAGTGGTTGTGGTGGT 60.272 47.619 0.00 0.00 46.68 4.16
4071 4672 1.405105 CTGAACAAGTGGTTGTGGTGG 59.595 52.381 0.00 0.00 46.68 4.61
4137 4741 6.821665 ACTAGGAATACAATTTTCGCAGCTAA 59.178 34.615 0.00 0.00 0.00 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.