Multiple sequence alignment - TraesCS7D01G377100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G377100 chr7D 100.000 4836 0 0 1 4836 488612465 488607630 0.000000e+00 8931.0
1 TraesCS7D01G377100 chr7D 95.620 959 38 3 1 958 55068583 55069538 0.000000e+00 1535.0
2 TraesCS7D01G377100 chr7D 94.003 617 36 1 342 958 543334313 543334928 0.000000e+00 933.0
3 TraesCS7D01G377100 chr7D 96.601 353 12 0 1 353 543333497 543333849 1.940000e-163 586.0
4 TraesCS7D01G377100 chr7D 77.339 962 207 10 2 958 174673946 174672991 4.230000e-155 558.0
5 TraesCS7D01G377100 chr7D 88.542 96 4 7 2617 2709 474338812 474338721 5.120000e-20 110.0
6 TraesCS7D01G377100 chr7A 88.316 1318 86 22 2708 3991 556103284 556102001 0.000000e+00 1519.0
7 TraesCS7D01G377100 chr7A 81.792 703 81 24 1017 1688 556104752 556104066 3.290000e-151 545.0
8 TraesCS7D01G377100 chr7A 86.240 516 32 21 4042 4525 556100926 556100418 1.540000e-144 523.0
9 TraesCS7D01G377100 chr7A 75.700 679 94 40 1885 2524 556104048 556103402 1.710000e-69 274.0
10 TraesCS7D01G377100 chr7A 85.116 215 22 8 4042 4247 556101525 556101312 1.360000e-50 211.0
11 TraesCS7D01G377100 chr7A 97.368 38 1 0 957 994 556104846 556104809 1.120000e-06 65.8
12 TraesCS7D01G377100 chr7B 91.309 955 59 14 2980 3923 516931747 516930806 0.000000e+00 1282.0
13 TraesCS7D01G377100 chr7B 87.268 699 58 8 1009 1689 516933648 516932963 0.000000e+00 769.0
14 TraesCS7D01G377100 chr7B 80.208 960 164 15 1 958 188600100 188601035 0.000000e+00 697.0
15 TraesCS7D01G377100 chr7B 88.376 585 42 15 3351 3931 516899933 516899371 0.000000e+00 680.0
16 TraesCS7D01G377100 chr7B 83.738 535 41 25 4008 4525 516898983 516898478 9.480000e-127 464.0
17 TraesCS7D01G377100 chr7B 81.218 591 41 33 4026 4562 516930045 516929471 3.480000e-111 412.0
18 TraesCS7D01G377100 chr7B 91.628 215 13 2 4311 4525 516915579 516915370 4.730000e-75 292.0
19 TraesCS7D01G377100 chr7B 93.529 170 9 1 3364 3531 516844827 516844658 8.030000e-63 252.0
20 TraesCS7D01G377100 chr7B 87.730 163 19 1 1678 1839 44939716 44939554 6.390000e-44 189.0
21 TraesCS7D01G377100 chr7B 91.045 134 7 2 4392 4525 516844472 516844344 4.970000e-40 176.0
22 TraesCS7D01G377100 chr7B 91.781 73 5 1 4303 4375 516844530 516844459 3.080000e-17 100.0
23 TraesCS7D01G377100 chr7B 100.000 38 0 0 957 994 516933727 516933690 2.410000e-08 71.3
24 TraesCS7D01G377100 chr1B 88.137 961 106 7 1 958 89376735 89375780 0.000000e+00 1136.0
25 TraesCS7D01G377100 chr1B 81.497 962 170 7 1 958 608375347 608376304 0.000000e+00 784.0
26 TraesCS7D01G377100 chr1B 88.172 93 10 1 2617 2709 139673446 139673537 5.120000e-20 110.0
27 TraesCS7D01G377100 chr2A 94.003 667 38 2 1 666 71128579 71127914 0.000000e+00 1009.0
28 TraesCS7D01G377100 chr2A 89.855 345 35 0 3094 3438 724522970 724523314 1.240000e-120 444.0
29 TraesCS7D01G377100 chr2A 95.918 49 1 1 1840 1888 89589144 89589191 1.440000e-10 78.7
30 TraesCS7D01G377100 chr5B 90.333 600 53 4 1 598 587362563 587361967 0.000000e+00 782.0
31 TraesCS7D01G377100 chr5B 91.713 362 27 2 594 955 587360453 587360095 2.600000e-137 499.0
32 TraesCS7D01G377100 chr5B 89.320 103 8 3 2617 2718 425880126 425880226 5.080000e-25 126.0
33 TraesCS7D01G377100 chr5B 88.542 96 8 3 2617 2711 582392661 582392568 3.960000e-21 113.0
34 TraesCS7D01G377100 chr5B 88.298 94 8 3 2617 2709 142424094 142424185 5.120000e-20 110.0
35 TraesCS7D01G377100 chr5B 94.595 37 2 0 3862 3898 327086593 327086629 1.880000e-04 58.4
36 TraesCS7D01G377100 chr3B 81.432 964 167 12 1 960 9959557 9960512 0.000000e+00 778.0
37 TraesCS7D01G377100 chr3B 75.544 965 215 15 2 958 798320470 798321421 5.710000e-124 455.0
38 TraesCS7D01G377100 chr3B 89.103 156 16 1 1688 1842 396272031 396271876 4.940000e-45 193.0
39 TraesCS7D01G377100 chr3B 87.349 166 16 4 1678 1839 383704316 383704480 8.270000e-43 185.0
40 TraesCS7D01G377100 chr6A 79.562 959 189 6 2 958 529599367 529600320 0.000000e+00 678.0
41 TraesCS7D01G377100 chr6A 92.933 283 16 4 4557 4836 215068480 215068761 4.510000e-110 409.0
42 TraesCS7D01G377100 chr6A 92.580 283 17 4 4557 4836 558173293 558173574 2.100000e-108 403.0
43 TraesCS7D01G377100 chr6A 88.889 153 16 1 1688 1839 118284204 118284356 2.300000e-43 187.0
44 TraesCS7D01G377100 chr2D 90.145 345 34 0 3094 3438 590155566 590155910 2.650000e-122 449.0
45 TraesCS7D01G377100 chr2D 88.889 153 16 1 1688 1839 79056319 79056167 2.300000e-43 187.0
46 TraesCS7D01G377100 chr2B 92.334 287 16 6 4555 4836 691271961 691272246 2.100000e-108 403.0
47 TraesCS7D01G377100 chr2B 89.899 99 5 5 2617 2713 387075937 387076032 6.570000e-24 122.0
48 TraesCS7D01G377100 chr6D 92.281 285 14 8 4557 4836 273967341 273967622 9.750000e-107 398.0
49 TraesCS7D01G377100 chr6B 91.986 287 18 5 4554 4836 63700573 63700288 9.750000e-107 398.0
50 TraesCS7D01G377100 chr6B 91.901 284 18 5 4557 4836 63690824 63690542 4.540000e-105 392.0
51 TraesCS7D01G377100 chr6B 91.901 284 18 5 4557 4836 63693261 63692979 4.540000e-105 392.0
52 TraesCS7D01G377100 chr1A 91.958 286 16 7 4556 4836 553944077 553943794 1.260000e-105 394.0
53 TraesCS7D01G377100 chr1A 89.362 94 5 4 2617 2708 99892171 99892081 3.960000e-21 113.0
54 TraesCS7D01G377100 chr4B 91.901 284 17 6 4557 4836 612318859 612319140 4.540000e-105 392.0
55 TraesCS7D01G377100 chr4B 88.750 160 15 3 1688 1844 106227561 106227402 4.940000e-45 193.0
56 TraesCS7D01G377100 chr3D 89.103 156 16 1 1688 1842 322435444 322435289 4.940000e-45 193.0
57 TraesCS7D01G377100 chr4A 88.462 156 17 1 1685 1839 598724452 598724607 2.300000e-43 187.0
58 TraesCS7D01G377100 chr1D 87.578 161 17 3 1680 1839 7349697 7349855 2.970000e-42 183.0
59 TraesCS7D01G377100 chr1D 94.286 35 1 1 3865 3898 48392589 48392623 9.000000e-03 52.8
60 TraesCS7D01G377100 chr5D 88.660 97 7 4 2617 2711 476942340 476942246 1.100000e-21 115.0
61 TraesCS7D01G377100 chr5D 94.286 35 2 0 3864 3898 287827584 287827618 2.000000e-03 54.7
62 TraesCS7D01G377100 chr4D 86.792 106 5 7 2617 2717 387812405 387812506 5.120000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G377100 chr7D 488607630 488612465 4835 True 8931.000000 8931 100.000000 1 4836 1 chr7D.!!$R3 4835
1 TraesCS7D01G377100 chr7D 55068583 55069538 955 False 1535.000000 1535 95.620000 1 958 1 chr7D.!!$F1 957
2 TraesCS7D01G377100 chr7D 543333497 543334928 1431 False 759.500000 933 95.302000 1 958 2 chr7D.!!$F2 957
3 TraesCS7D01G377100 chr7D 174672991 174673946 955 True 558.000000 558 77.339000 2 958 1 chr7D.!!$R1 956
4 TraesCS7D01G377100 chr7A 556100418 556104846 4428 True 522.966667 1519 85.755333 957 4525 6 chr7A.!!$R1 3568
5 TraesCS7D01G377100 chr7B 188600100 188601035 935 False 697.000000 697 80.208000 1 958 1 chr7B.!!$F1 957
6 TraesCS7D01G377100 chr7B 516929471 516933727 4256 True 633.575000 1282 89.948750 957 4562 4 chr7B.!!$R5 3605
7 TraesCS7D01G377100 chr7B 516898478 516899933 1455 True 572.000000 680 86.057000 3351 4525 2 chr7B.!!$R4 1174
8 TraesCS7D01G377100 chr1B 89375780 89376735 955 True 1136.000000 1136 88.137000 1 958 1 chr1B.!!$R1 957
9 TraesCS7D01G377100 chr1B 608375347 608376304 957 False 784.000000 784 81.497000 1 958 1 chr1B.!!$F2 957
10 TraesCS7D01G377100 chr2A 71127914 71128579 665 True 1009.000000 1009 94.003000 1 666 1 chr2A.!!$R1 665
11 TraesCS7D01G377100 chr5B 587360095 587362563 2468 True 640.500000 782 91.023000 1 955 2 chr5B.!!$R2 954
12 TraesCS7D01G377100 chr3B 9959557 9960512 955 False 778.000000 778 81.432000 1 960 1 chr3B.!!$F1 959
13 TraesCS7D01G377100 chr3B 798320470 798321421 951 False 455.000000 455 75.544000 2 958 1 chr3B.!!$F3 956
14 TraesCS7D01G377100 chr6A 529599367 529600320 953 False 678.000000 678 79.562000 2 958 1 chr6A.!!$F3 956
15 TraesCS7D01G377100 chr6B 63690542 63693261 2719 True 392.000000 392 91.901000 4557 4836 2 chr6B.!!$R2 279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 2992 0.620556 AGCCGTTGGATTGGATGAGT 59.379 50.0 0.00 0.00 0.00 3.41 F
1284 3331 0.035458 CTCTATCCATTGGTCGGGGC 59.965 60.0 1.86 0.00 0.00 5.80 F
1997 4069 0.028505 GTTGCCATAGCGCAGTCATG 59.971 55.0 11.47 7.25 44.31 3.07 F
2831 4984 0.114954 ACCTGACCCAACAATGGCAT 59.885 50.0 0.00 0.00 46.09 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1865 3935 0.035458 AAGGTGCGAGTCCTTCTTGG 59.965 55.0 0.0 0.00 40.80 3.61 R
2836 4989 0.179062 CGAATTCCTCCAGCTCCAGG 60.179 60.0 0.0 1.36 0.00 4.45 R
2837 4990 0.539051 ACGAATTCCTCCAGCTCCAG 59.461 55.0 0.0 0.00 0.00 3.86 R
4608 11341 0.179127 ATCTCGGTGTCGTGCTCATG 60.179 55.0 0.0 0.00 37.69 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.626924 ACGAGTCCCTGGCGCTTT 61.627 61.111 7.64 0.00 0.00 3.51
239 242 4.341806 TGCAATGCTTGACTATATTTGGGG 59.658 41.667 6.82 0.00 0.00 4.96
240 243 4.262164 GCAATGCTTGACTATATTTGGGGG 60.262 45.833 0.00 0.00 0.00 5.40
325 328 0.907230 GGTGAGAGAAGGGGAGCTGT 60.907 60.000 0.00 0.00 0.00 4.40
394 872 2.355132 GAGTTCGGCGAGATCTTCTGTA 59.645 50.000 10.46 0.00 0.00 2.74
644 2642 2.947652 GCAGATCTTGGCATGCTAAGAA 59.052 45.455 39.16 26.51 44.49 2.52
686 2684 0.832135 ACTCCTGTCGGAAGCCTTGA 60.832 55.000 0.00 0.00 39.29 3.02
689 2687 1.351017 TCCTGTCGGAAGCCTTGAATT 59.649 47.619 0.00 0.00 36.03 2.17
751 2749 6.542821 AGAGGACATGAAATACCAACTGAAA 58.457 36.000 0.00 0.00 0.00 2.69
777 2775 7.889873 TGTGGTTCTCTTTCTTTTCCATTTA 57.110 32.000 0.00 0.00 0.00 1.40
994 2992 0.620556 AGCCGTTGGATTGGATGAGT 59.379 50.000 0.00 0.00 0.00 3.41
996 2994 1.818674 GCCGTTGGATTGGATGAGTTT 59.181 47.619 0.00 0.00 0.00 2.66
998 2996 3.306019 GCCGTTGGATTGGATGAGTTTTT 60.306 43.478 0.00 0.00 0.00 1.94
1030 3062 2.224867 ACAAGCTTCTTGTAGCACCCAT 60.225 45.455 10.16 0.00 43.68 4.00
1165 3200 2.731691 TTCCTCTCCAAGGTGCGTGC 62.732 60.000 0.00 0.00 46.32 5.34
1182 3217 1.182385 TGCCCACCGAATCCAAAACC 61.182 55.000 0.00 0.00 0.00 3.27
1238 3273 4.818546 CAGAAACATATGCCCTAGAACCTG 59.181 45.833 1.58 0.00 0.00 4.00
1284 3331 0.035458 CTCTATCCATTGGTCGGGGC 59.965 60.000 1.86 0.00 0.00 5.80
1364 3417 5.066893 TGAGTCAGATGATTTTGCCTTATGC 59.933 40.000 0.00 0.00 41.77 3.14
1448 3510 1.071814 GTGGCCACGGGTTGTAGAA 59.928 57.895 22.49 0.00 0.00 2.10
1449 3511 0.953960 GTGGCCACGGGTTGTAGAAG 60.954 60.000 22.49 0.00 0.00 2.85
1476 3542 3.093057 GCAGACTCCTCTCCTTGAAGTA 58.907 50.000 0.00 0.00 0.00 2.24
1480 3546 6.460953 GCAGACTCCTCTCCTTGAAGTATAAG 60.461 46.154 0.00 0.00 0.00 1.73
1524 3590 2.356069 TGTTGACGCATGTTACTTGCAA 59.644 40.909 20.33 0.00 40.14 4.08
1570 3638 2.008329 CAAGCTGTTTTTGGCAAAGCA 58.992 42.857 20.27 17.58 36.32 3.91
1585 3653 5.707411 GCAAAGCATGGCTATTTACTTTG 57.293 39.130 18.28 18.28 44.17 2.77
1586 3654 5.410067 GCAAAGCATGGCTATTTACTTTGA 58.590 37.500 23.19 0.00 44.11 2.69
1629 3697 2.745968 ACTTTGGGAAGCTTGTCCAAA 58.254 42.857 27.88 27.88 45.08 3.28
1643 3711 4.046286 TGTCCAAACCTATCCTGCATTT 57.954 40.909 0.00 0.00 0.00 2.32
1657 3727 7.902920 ATCCTGCATTTGGTGATTATAACTT 57.097 32.000 0.00 0.00 0.00 2.66
1659 3729 8.450578 TCCTGCATTTGGTGATTATAACTTAG 57.549 34.615 0.00 0.00 0.00 2.18
1689 3759 7.244898 TGCGTTTATGGTGTTTTGTCATATAC 58.755 34.615 0.00 0.00 0.00 1.47
1690 3760 7.119992 TGCGTTTATGGTGTTTTGTCATATACT 59.880 33.333 0.00 0.00 0.00 2.12
1692 3762 8.120465 CGTTTATGGTGTTTTGTCATATACTCC 58.880 37.037 0.00 0.00 0.00 3.85
1693 3763 8.952278 GTTTATGGTGTTTTGTCATATACTCCA 58.048 33.333 0.00 0.00 38.20 3.86
1695 3765 7.807977 ATGGTGTTTTGTCATATACTCCATC 57.192 36.000 0.00 0.00 39.41 3.51
1697 3767 5.236478 GGTGTTTTGTCATATACTCCATCCG 59.764 44.000 0.00 0.00 0.00 4.18
1698 3768 5.815740 GTGTTTTGTCATATACTCCATCCGT 59.184 40.000 0.00 0.00 0.00 4.69
1700 3770 6.537301 TGTTTTGTCATATACTCCATCCGTTC 59.463 38.462 0.00 0.00 0.00 3.95
1701 3771 5.862678 TTGTCATATACTCCATCCGTTCA 57.137 39.130 0.00 0.00 0.00 3.18
1702 3772 5.196341 TGTCATATACTCCATCCGTTCAC 57.804 43.478 0.00 0.00 0.00 3.18
1703 3773 4.647399 TGTCATATACTCCATCCGTTCACA 59.353 41.667 0.00 0.00 0.00 3.58
1704 3774 5.128008 TGTCATATACTCCATCCGTTCACAA 59.872 40.000 0.00 0.00 0.00 3.33
1705 3775 6.046593 GTCATATACTCCATCCGTTCACAAA 58.953 40.000 0.00 0.00 0.00 2.83
1706 3776 6.706270 GTCATATACTCCATCCGTTCACAAAT 59.294 38.462 0.00 0.00 0.00 2.32
1707 3777 7.226720 GTCATATACTCCATCCGTTCACAAATT 59.773 37.037 0.00 0.00 0.00 1.82
1708 3778 7.441157 TCATATACTCCATCCGTTCACAAATTC 59.559 37.037 0.00 0.00 0.00 2.17
1709 3779 3.750371 ACTCCATCCGTTCACAAATTCA 58.250 40.909 0.00 0.00 0.00 2.57
1710 3780 4.141287 ACTCCATCCGTTCACAAATTCAA 58.859 39.130 0.00 0.00 0.00 2.69
1711 3781 4.023193 ACTCCATCCGTTCACAAATTCAAC 60.023 41.667 0.00 0.00 0.00 3.18
1712 3782 3.885901 TCCATCCGTTCACAAATTCAACA 59.114 39.130 0.00 0.00 0.00 3.33
1713 3783 4.023279 TCCATCCGTTCACAAATTCAACAG 60.023 41.667 0.00 0.00 0.00 3.16
1714 3784 3.980646 TCCGTTCACAAATTCAACAGG 57.019 42.857 0.00 0.00 0.00 4.00
1715 3785 3.283751 TCCGTTCACAAATTCAACAGGT 58.716 40.909 0.00 0.00 0.00 4.00
1716 3786 3.697045 TCCGTTCACAAATTCAACAGGTT 59.303 39.130 0.00 0.00 0.00 3.50
1717 3787 4.158764 TCCGTTCACAAATTCAACAGGTTT 59.841 37.500 0.00 0.00 0.00 3.27
1718 3788 4.867608 CCGTTCACAAATTCAACAGGTTTT 59.132 37.500 0.00 0.00 0.00 2.43
1719 3789 5.220378 CCGTTCACAAATTCAACAGGTTTTG 60.220 40.000 0.00 0.00 35.66 2.44
1720 3790 5.220378 CGTTCACAAATTCAACAGGTTTTGG 60.220 40.000 0.00 0.00 34.23 3.28
1721 3791 5.667539 TCACAAATTCAACAGGTTTTGGA 57.332 34.783 0.00 0.00 34.23 3.53
1722 3792 6.232581 TCACAAATTCAACAGGTTTTGGAT 57.767 33.333 0.00 0.00 34.23 3.41
1723 3793 7.353414 TCACAAATTCAACAGGTTTTGGATA 57.647 32.000 0.00 0.00 34.23 2.59
1724 3794 7.961351 TCACAAATTCAACAGGTTTTGGATAT 58.039 30.769 0.00 0.00 34.23 1.63
1725 3795 8.428063 TCACAAATTCAACAGGTTTTGGATATT 58.572 29.630 0.00 0.00 34.23 1.28
1726 3796 9.054922 CACAAATTCAACAGGTTTTGGATATTT 57.945 29.630 0.00 0.00 34.23 1.40
1727 3797 9.271828 ACAAATTCAACAGGTTTTGGATATTTC 57.728 29.630 0.00 0.00 34.23 2.17
1728 3798 9.270640 CAAATTCAACAGGTTTTGGATATTTCA 57.729 29.630 0.00 0.00 0.00 2.69
1734 3804 9.316730 CAACAGGTTTTGGATATTTCATTATGG 57.683 33.333 0.00 0.00 0.00 2.74
1735 3805 8.837099 ACAGGTTTTGGATATTTCATTATGGA 57.163 30.769 0.00 0.00 0.00 3.41
1736 3806 8.917088 ACAGGTTTTGGATATTTCATTATGGAG 58.083 33.333 0.00 0.00 0.00 3.86
1737 3807 8.917088 CAGGTTTTGGATATTTCATTATGGAGT 58.083 33.333 0.00 0.00 0.00 3.85
1744 3814 9.869757 TGGATATTTCATTATGGAGTACATACG 57.130 33.333 0.00 0.00 41.61 3.06
1745 3815 9.314321 GGATATTTCATTATGGAGTACATACGG 57.686 37.037 0.00 0.00 41.61 4.02
1747 3817 9.871238 ATATTTCATTATGGAGTACATACGGAC 57.129 33.333 0.00 0.00 41.61 4.79
1748 3818 6.971726 TTCATTATGGAGTACATACGGACT 57.028 37.500 0.00 0.00 41.61 3.85
1749 3819 6.327279 TCATTATGGAGTACATACGGACTG 57.673 41.667 0.00 0.00 41.61 3.51
1750 3820 6.066032 TCATTATGGAGTACATACGGACTGA 58.934 40.000 0.00 0.00 41.61 3.41
1751 3821 6.548251 TCATTATGGAGTACATACGGACTGAA 59.452 38.462 0.00 0.00 41.61 3.02
1752 3822 6.778834 TTATGGAGTACATACGGACTGAAA 57.221 37.500 0.00 0.00 41.61 2.69
1753 3823 5.871396 ATGGAGTACATACGGACTGAAAT 57.129 39.130 0.00 0.00 38.26 2.17
1754 3824 5.006153 TGGAGTACATACGGACTGAAATG 57.994 43.478 0.00 0.00 0.00 2.32
1755 3825 4.707934 TGGAGTACATACGGACTGAAATGA 59.292 41.667 0.00 0.00 0.00 2.57
1756 3826 5.163550 TGGAGTACATACGGACTGAAATGAG 60.164 44.000 0.00 0.00 0.00 2.90
1757 3827 5.163540 GGAGTACATACGGACTGAAATGAGT 60.164 44.000 0.00 0.00 0.00 3.41
1758 3828 5.651530 AGTACATACGGACTGAAATGAGTG 58.348 41.667 0.00 0.00 0.00 3.51
1759 3829 4.801330 ACATACGGACTGAAATGAGTGA 57.199 40.909 7.93 0.00 0.00 3.41
1760 3830 5.147330 ACATACGGACTGAAATGAGTGAA 57.853 39.130 7.93 0.00 0.00 3.18
1761 3831 4.929808 ACATACGGACTGAAATGAGTGAAC 59.070 41.667 7.93 0.00 0.00 3.18
1762 3832 3.469008 ACGGACTGAAATGAGTGAACA 57.531 42.857 0.00 0.00 0.00 3.18
1763 3833 3.804036 ACGGACTGAAATGAGTGAACAA 58.196 40.909 0.00 0.00 0.00 2.83
1764 3834 4.196193 ACGGACTGAAATGAGTGAACAAA 58.804 39.130 0.00 0.00 0.00 2.83
1765 3835 4.035208 ACGGACTGAAATGAGTGAACAAAC 59.965 41.667 0.00 0.00 0.00 2.93
1766 3836 4.035091 CGGACTGAAATGAGTGAACAAACA 59.965 41.667 0.00 0.00 0.00 2.83
1767 3837 5.273944 GGACTGAAATGAGTGAACAAACAC 58.726 41.667 0.00 0.00 40.60 3.32
1768 3838 5.163663 GGACTGAAATGAGTGAACAAACACA 60.164 40.000 0.00 0.00 42.45 3.72
1769 3839 5.640732 ACTGAAATGAGTGAACAAACACAC 58.359 37.500 0.00 0.00 42.45 3.82
1770 3840 4.992688 TGAAATGAGTGAACAAACACACC 58.007 39.130 0.00 0.00 42.45 4.16
1771 3841 4.142271 TGAAATGAGTGAACAAACACACCC 60.142 41.667 0.00 0.00 42.45 4.61
1772 3842 2.498644 TGAGTGAACAAACACACCCA 57.501 45.000 0.00 0.00 42.45 4.51
1773 3843 2.796557 TGAGTGAACAAACACACCCAA 58.203 42.857 0.00 0.00 42.45 4.12
1774 3844 3.157881 TGAGTGAACAAACACACCCAAA 58.842 40.909 0.00 0.00 42.45 3.28
1775 3845 3.057174 TGAGTGAACAAACACACCCAAAC 60.057 43.478 0.00 0.00 42.45 2.93
1776 3846 2.094957 AGTGAACAAACACACCCAAACG 60.095 45.455 0.00 0.00 42.45 3.60
1777 3847 1.887198 TGAACAAACACACCCAAACGT 59.113 42.857 0.00 0.00 0.00 3.99
1778 3848 2.255316 GAACAAACACACCCAAACGTG 58.745 47.619 0.00 0.00 39.75 4.49
1780 3850 1.200484 ACAAACACACCCAAACGTGTC 59.800 47.619 0.00 0.00 45.14 3.67
1781 3851 1.470890 CAAACACACCCAAACGTGTCT 59.529 47.619 0.00 0.00 45.14 3.41
1782 3852 2.678836 CAAACACACCCAAACGTGTCTA 59.321 45.455 0.00 0.00 45.14 2.59
1783 3853 2.922740 ACACACCCAAACGTGTCTAT 57.077 45.000 0.00 0.00 45.14 1.98
1784 3854 4.339872 AACACACCCAAACGTGTCTATA 57.660 40.909 0.00 0.00 45.14 1.31
1785 3855 4.546829 ACACACCCAAACGTGTCTATAT 57.453 40.909 0.00 0.00 45.14 0.86
1786 3856 5.664294 ACACACCCAAACGTGTCTATATA 57.336 39.130 0.00 0.00 45.14 0.86
1787 3857 5.413499 ACACACCCAAACGTGTCTATATAC 58.587 41.667 0.00 0.00 45.14 1.47
1788 3858 5.047164 ACACACCCAAACGTGTCTATATACA 60.047 40.000 0.00 0.00 45.14 2.29
1789 3859 6.046593 CACACCCAAACGTGTCTATATACAT 58.953 40.000 0.00 0.00 45.14 2.29
1790 3860 6.019075 CACACCCAAACGTGTCTATATACATG 60.019 42.308 8.51 8.51 45.14 3.21
1792 3862 6.019075 CACCCAAACGTGTCTATATACATGTG 60.019 42.308 14.76 6.90 46.36 3.21
1793 3863 6.127281 ACCCAAACGTGTCTATATACATGTGA 60.127 38.462 14.76 0.00 46.36 3.58
1794 3864 6.759356 CCCAAACGTGTCTATATACATGTGAA 59.241 38.462 14.76 0.00 46.36 3.18
1795 3865 7.441157 CCCAAACGTGTCTATATACATGTGAAT 59.559 37.037 14.76 4.30 46.36 2.57
1796 3866 8.487970 CCAAACGTGTCTATATACATGTGAATC 58.512 37.037 14.76 0.00 46.36 2.52
1797 3867 9.030301 CAAACGTGTCTATATACATGTGAATCA 57.970 33.333 14.76 0.00 46.36 2.57
1798 3868 8.803201 AACGTGTCTATATACATGTGAATCAG 57.197 34.615 14.76 0.00 46.36 2.90
1799 3869 8.166422 ACGTGTCTATATACATGTGAATCAGA 57.834 34.615 13.62 1.91 45.56 3.27
1800 3870 8.630037 ACGTGTCTATATACATGTGAATCAGAA 58.370 33.333 13.62 0.00 45.56 3.02
1801 3871 9.463443 CGTGTCTATATACATGTGAATCAGAAA 57.537 33.333 9.11 0.00 32.73 2.52
1810 3880 7.750229 ACATGTGAATCAGAAAAAGCTAGAA 57.250 32.000 0.00 0.00 0.00 2.10
1811 3881 7.588512 ACATGTGAATCAGAAAAAGCTAGAAC 58.411 34.615 0.00 0.00 0.00 3.01
1812 3882 7.229306 ACATGTGAATCAGAAAAAGCTAGAACA 59.771 33.333 0.00 0.00 0.00 3.18
1813 3883 7.750229 TGTGAATCAGAAAAAGCTAGAACAT 57.250 32.000 0.00 0.00 0.00 2.71
1814 3884 7.810658 TGTGAATCAGAAAAAGCTAGAACATC 58.189 34.615 0.00 0.00 0.00 3.06
1815 3885 7.663081 TGTGAATCAGAAAAAGCTAGAACATCT 59.337 33.333 0.00 0.00 0.00 2.90
1816 3886 8.510505 GTGAATCAGAAAAAGCTAGAACATCTT 58.489 33.333 0.00 0.00 0.00 2.40
1817 3887 9.725019 TGAATCAGAAAAAGCTAGAACATCTTA 57.275 29.630 0.00 0.00 0.00 2.10
1829 3899 9.035607 AGCTAGAACATCTTATATTTGTGAACG 57.964 33.333 0.00 0.00 0.00 3.95
1830 3900 8.276325 GCTAGAACATCTTATATTTGTGAACGG 58.724 37.037 0.00 0.00 0.00 4.44
1831 3901 9.529325 CTAGAACATCTTATATTTGTGAACGGA 57.471 33.333 0.00 0.00 0.00 4.69
1832 3902 8.425577 AGAACATCTTATATTTGTGAACGGAG 57.574 34.615 0.00 0.00 0.00 4.63
1833 3903 7.495934 AGAACATCTTATATTTGTGAACGGAGG 59.504 37.037 0.00 0.00 0.00 4.30
1834 3904 6.055588 ACATCTTATATTTGTGAACGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
1835 3905 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
1836 3906 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
1837 3907 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
1838 3908 6.608405 TCTTATATTTGTGAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
1839 3909 5.888982 ATATTTGTGAACGGAGGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
1840 3910 4.569719 ATTTGTGAACGGAGGGAGTATT 57.430 40.909 0.00 0.00 0.00 1.89
1841 3911 4.360951 TTTGTGAACGGAGGGAGTATTT 57.639 40.909 0.00 0.00 0.00 1.40
1842 3912 4.360951 TTGTGAACGGAGGGAGTATTTT 57.639 40.909 0.00 0.00 0.00 1.82
1843 3913 4.360951 TGTGAACGGAGGGAGTATTTTT 57.639 40.909 0.00 0.00 0.00 1.94
1844 3914 5.486735 TGTGAACGGAGGGAGTATTTTTA 57.513 39.130 0.00 0.00 0.00 1.52
1845 3915 5.484715 TGTGAACGGAGGGAGTATTTTTAG 58.515 41.667 0.00 0.00 0.00 1.85
1846 3916 5.246656 TGTGAACGGAGGGAGTATTTTTAGA 59.753 40.000 0.00 0.00 0.00 2.10
1847 3917 5.811100 GTGAACGGAGGGAGTATTTTTAGAG 59.189 44.000 0.00 0.00 0.00 2.43
1848 3918 5.718130 TGAACGGAGGGAGTATTTTTAGAGA 59.282 40.000 0.00 0.00 0.00 3.10
1849 3919 6.211986 TGAACGGAGGGAGTATTTTTAGAGAA 59.788 38.462 0.00 0.00 0.00 2.87
1850 3920 6.616237 ACGGAGGGAGTATTTTTAGAGAAA 57.384 37.500 0.00 0.00 0.00 2.52
1851 3921 7.012661 ACGGAGGGAGTATTTTTAGAGAAAA 57.987 36.000 0.00 0.00 32.61 2.29
1852 3922 7.104290 ACGGAGGGAGTATTTTTAGAGAAAAG 58.896 38.462 0.00 0.00 35.96 2.27
1853 3923 7.038516 ACGGAGGGAGTATTTTTAGAGAAAAGA 60.039 37.037 0.00 0.00 35.96 2.52
1854 3924 7.278203 CGGAGGGAGTATTTTTAGAGAAAAGAC 59.722 40.741 1.89 1.89 35.96 3.01
1855 3925 7.278203 GGAGGGAGTATTTTTAGAGAAAAGACG 59.722 40.741 4.11 0.00 35.96 4.18
1856 3926 6.594547 AGGGAGTATTTTTAGAGAAAAGACGC 59.405 38.462 4.82 4.82 35.96 5.19
1857 3927 6.370718 GGGAGTATTTTTAGAGAAAAGACGCA 59.629 38.462 12.31 0.00 35.96 5.24
1858 3928 7.413109 GGGAGTATTTTTAGAGAAAAGACGCAG 60.413 40.741 12.31 0.00 35.96 5.18
1859 3929 6.832804 AGTATTTTTAGAGAAAAGACGCAGC 58.167 36.000 4.11 0.00 35.96 5.25
1860 3930 4.483476 TTTTTAGAGAAAAGACGCAGCC 57.517 40.909 0.00 0.00 35.96 4.85
1861 3931 1.710013 TTAGAGAAAAGACGCAGCCG 58.290 50.000 0.00 0.00 41.14 5.52
1862 3932 0.885879 TAGAGAAAAGACGCAGCCGA 59.114 50.000 0.00 0.00 38.29 5.54
1863 3933 0.389166 AGAGAAAAGACGCAGCCGAG 60.389 55.000 0.00 0.00 38.29 4.63
1864 3934 0.667792 GAGAAAAGACGCAGCCGAGT 60.668 55.000 0.00 0.00 38.29 4.18
1865 3935 0.667792 AGAAAAGACGCAGCCGAGTC 60.668 55.000 0.00 0.00 41.81 3.36
1866 3936 1.627550 GAAAAGACGCAGCCGAGTCC 61.628 60.000 0.00 0.00 42.41 3.85
1867 3937 2.377628 AAAAGACGCAGCCGAGTCCA 62.378 55.000 0.00 0.00 42.41 4.02
1868 3938 2.377628 AAAGACGCAGCCGAGTCCAA 62.378 55.000 0.00 0.00 42.41 3.53
1869 3939 2.771763 AAGACGCAGCCGAGTCCAAG 62.772 60.000 0.00 0.00 42.41 3.61
1870 3940 3.282745 GACGCAGCCGAGTCCAAGA 62.283 63.158 0.00 0.00 36.07 3.02
1871 3941 2.048222 CGCAGCCGAGTCCAAGAA 60.048 61.111 0.00 0.00 36.29 2.52
1872 3942 2.097038 CGCAGCCGAGTCCAAGAAG 61.097 63.158 0.00 0.00 36.29 2.85
1873 3943 1.743252 GCAGCCGAGTCCAAGAAGG 60.743 63.158 0.00 0.00 39.47 3.46
1874 3944 1.975327 CAGCCGAGTCCAAGAAGGA 59.025 57.895 0.00 0.00 46.75 3.36
1883 3953 0.832135 TCCAAGAAGGACTCGCACCT 60.832 55.000 0.00 0.00 43.07 4.00
1915 3986 2.439156 GATGTGGGTGGAGCTGCC 60.439 66.667 1.53 0.00 37.10 4.85
1959 4030 0.182537 TGCTGTGGGCCATGGTATAC 59.817 55.000 10.70 10.22 40.92 1.47
1963 4034 1.136828 GTGGGCCATGGTATACTGGA 58.863 55.000 10.70 0.00 34.24 3.86
1966 4037 0.036875 GGCCATGGTATACTGGAGCC 59.963 60.000 14.67 12.00 34.24 4.70
1989 4061 0.799534 GCTTTGCTGTTGCCATAGCG 60.800 55.000 2.10 0.00 44.31 4.26
1996 4068 0.392863 TGTTGCCATAGCGCAGTCAT 60.393 50.000 11.47 0.00 44.31 3.06
1997 4069 0.028505 GTTGCCATAGCGCAGTCATG 59.971 55.000 11.47 7.25 44.31 3.07
2018 4090 3.263170 TGCTCATCTTGGCTGTTTAGGTA 59.737 43.478 0.00 0.00 0.00 3.08
2028 4100 6.279513 TGGCTGTTTAGGTATTCAATTTGG 57.720 37.500 0.00 0.00 0.00 3.28
2030 4102 5.337169 GGCTGTTTAGGTATTCAATTTGGCA 60.337 40.000 0.00 0.00 0.00 4.92
2087 4159 1.238439 ACAGATTTGTGGCTCAACCG 58.762 50.000 0.74 0.00 43.94 4.44
2107 4179 5.416947 ACCGCTCGAGTAATTTGAATACTT 58.583 37.500 15.13 0.00 0.00 2.24
2109 4181 5.050972 CCGCTCGAGTAATTTGAATACTTCC 60.051 44.000 15.13 0.00 0.00 3.46
2110 4182 5.749109 CGCTCGAGTAATTTGAATACTTCCT 59.251 40.000 15.13 0.00 0.00 3.36
2114 4186 9.372369 CTCGAGTAATTTGAATACTTCCTTCTT 57.628 33.333 3.62 0.00 0.00 2.52
2164 4236 7.928167 TGAATAGGTTCACTAGATTGCAGTATG 59.072 37.037 0.00 0.00 39.36 2.39
2180 4282 5.618056 CAGTATGCAAATCTGTGTGAACT 57.382 39.130 0.00 0.00 0.00 3.01
2293 4403 3.381335 GGAACCTACCATACCTGAAGGA 58.619 50.000 2.62 0.00 38.94 3.36
2296 4406 4.280789 ACCTACCATACCTGAAGGATCA 57.719 45.455 2.62 0.00 38.94 2.92
2316 4426 4.209538 TCAAATCATGGGGTAGCATTCAG 58.790 43.478 0.00 0.00 0.00 3.02
2323 4433 1.825622 GGTAGCATTCAGGGGCTGC 60.826 63.158 0.00 0.00 41.25 5.25
2328 4438 1.888018 CATTCAGGGGCTGCAAGTG 59.112 57.895 0.50 0.00 35.30 3.16
2331 4441 2.674380 CAGGGGCTGCAAGTGACC 60.674 66.667 0.50 0.00 35.30 4.02
2342 4452 0.524862 CAAGTGACCTTGCCATGAGC 59.475 55.000 0.00 0.00 41.51 4.26
2366 4476 3.732471 CGTTTCTAGCTCAGCCACTAGTC 60.732 52.174 0.00 0.00 37.67 2.59
2378 4488 2.735762 GCCACTAGTCGGTGAGAACATC 60.736 54.545 11.47 0.00 39.34 3.06
2384 4494 0.532573 TCGGTGAGAACATCTGCTCC 59.467 55.000 0.00 0.00 0.00 4.70
2394 4504 2.089980 ACATCTGCTCCAGTGATTTGC 58.910 47.619 0.00 0.00 32.61 3.68
2399 4509 2.417933 CTGCTCCAGTGATTTGCTGTAC 59.582 50.000 0.00 0.00 32.41 2.90
2412 4523 7.119846 GTGATTTGCTGTACCTTGAGTAGAAAT 59.880 37.037 0.00 0.00 0.00 2.17
2467 4584 3.716353 TCCTATGATGTGTACCCTTGCAT 59.284 43.478 0.00 0.00 0.00 3.96
2475 4592 0.811281 GTACCCTTGCATGGAACTGC 59.189 55.000 19.85 2.33 42.62 4.40
2481 4598 2.644887 TGCATGGAACTGCACCTTC 58.355 52.632 0.00 0.00 46.76 3.46
2486 4603 3.445096 GCATGGAACTGCACCTTCTTTAT 59.555 43.478 0.00 0.00 41.87 1.40
2489 4606 4.922206 TGGAACTGCACCTTCTTTATGAT 58.078 39.130 0.00 0.00 0.00 2.45
2494 4611 5.999044 ACTGCACCTTCTTTATGATGAGAT 58.001 37.500 0.00 0.00 0.00 2.75
2527 4645 3.561725 GGAGATATTCGTTGGCTTCCAAG 59.438 47.826 0.00 0.00 44.82 3.61
2539 4657 2.029918 GGCTTCCAAGTTGGTTAGCTTG 60.030 50.000 31.70 15.74 42.03 4.01
2540 4658 2.623416 GCTTCCAAGTTGGTTAGCTTGT 59.377 45.455 28.83 0.00 41.80 3.16
2541 4659 3.304726 GCTTCCAAGTTGGTTAGCTTGTC 60.305 47.826 28.83 11.95 41.80 3.18
2542 4660 2.489971 TCCAAGTTGGTTAGCTTGTCG 58.510 47.619 21.35 0.00 41.80 4.35
2545 4663 3.395639 CAAGTTGGTTAGCTTGTCGGTA 58.604 45.455 0.00 0.00 39.45 4.02
2546 4664 3.756933 AGTTGGTTAGCTTGTCGGTAA 57.243 42.857 0.00 0.00 33.46 2.85
2602 4747 3.039252 TGTTTGAAAACCCCCTGATGT 57.961 42.857 3.59 0.00 38.11 3.06
2610 4755 0.116940 ACCCCCTGATGTTGCCAAAT 59.883 50.000 0.00 0.00 0.00 2.32
2614 4759 3.455543 CCCCCTGATGTTGCCAAATAAAT 59.544 43.478 0.00 0.00 0.00 1.40
2615 4760 4.653341 CCCCCTGATGTTGCCAAATAAATA 59.347 41.667 0.00 0.00 0.00 1.40
2616 4761 5.453198 CCCCCTGATGTTGCCAAATAAATAC 60.453 44.000 0.00 0.00 0.00 1.89
2617 4762 5.363580 CCCCTGATGTTGCCAAATAAATACT 59.636 40.000 0.00 0.00 0.00 2.12
2618 4763 6.461509 CCCCTGATGTTGCCAAATAAATACTC 60.462 42.308 0.00 0.00 0.00 2.59
2619 4764 6.322201 CCCTGATGTTGCCAAATAAATACTCT 59.678 38.462 0.00 0.00 0.00 3.24
2620 4765 7.198390 CCTGATGTTGCCAAATAAATACTCTG 58.802 38.462 0.00 0.00 0.00 3.35
2621 4766 7.148018 CCTGATGTTGCCAAATAAATACTCTGT 60.148 37.037 0.00 0.00 0.00 3.41
2622 4767 7.761409 TGATGTTGCCAAATAAATACTCTGTC 58.239 34.615 0.00 0.00 0.00 3.51
2623 4768 7.392953 TGATGTTGCCAAATAAATACTCTGTCA 59.607 33.333 0.00 0.00 0.00 3.58
2624 4769 6.908825 TGTTGCCAAATAAATACTCTGTCAC 58.091 36.000 0.00 0.00 0.00 3.67
2625 4770 6.488344 TGTTGCCAAATAAATACTCTGTCACA 59.512 34.615 0.00 0.00 0.00 3.58
2626 4771 7.013750 TGTTGCCAAATAAATACTCTGTCACAA 59.986 33.333 0.00 0.00 0.00 3.33
2627 4772 7.517614 TGCCAAATAAATACTCTGTCACAAA 57.482 32.000 0.00 0.00 0.00 2.83
2628 4773 7.946207 TGCCAAATAAATACTCTGTCACAAAA 58.054 30.769 0.00 0.00 0.00 2.44
2629 4774 8.584157 TGCCAAATAAATACTCTGTCACAAAAT 58.416 29.630 0.00 0.00 0.00 1.82
2639 4784 9.725019 ATACTCTGTCACAAAATAATTGTCTCA 57.275 29.630 0.00 0.00 0.00 3.27
2640 4785 8.450578 ACTCTGTCACAAAATAATTGTCTCAA 57.549 30.769 0.00 0.00 0.00 3.02
2641 4786 8.345565 ACTCTGTCACAAAATAATTGTCTCAAC 58.654 33.333 0.00 0.00 0.00 3.18
2642 4787 8.450578 TCTGTCACAAAATAATTGTCTCAACT 57.549 30.769 0.00 0.00 0.00 3.16
2643 4788 8.902806 TCTGTCACAAAATAATTGTCTCAACTT 58.097 29.630 0.00 0.00 0.00 2.66
2644 4789 9.173939 CTGTCACAAAATAATTGTCTCAACTTC 57.826 33.333 0.00 0.00 0.00 3.01
2645 4790 8.681806 TGTCACAAAATAATTGTCTCAACTTCA 58.318 29.630 0.00 0.00 0.00 3.02
2646 4791 9.173939 GTCACAAAATAATTGTCTCAACTTCAG 57.826 33.333 0.00 0.00 0.00 3.02
2647 4792 8.902806 TCACAAAATAATTGTCTCAACTTCAGT 58.097 29.630 0.00 0.00 0.00 3.41
2653 4798 9.561069 AATAATTGTCTCAACTTCAGTACAACT 57.439 29.630 0.00 0.00 30.40 3.16
2654 4799 7.865706 AATTGTCTCAACTTCAGTACAACTT 57.134 32.000 0.00 0.00 30.40 2.66
2655 4800 7.865706 ATTGTCTCAACTTCAGTACAACTTT 57.134 32.000 0.00 0.00 30.40 2.66
2656 4801 7.681939 TTGTCTCAACTTCAGTACAACTTTT 57.318 32.000 0.00 0.00 0.00 2.27
2657 4802 8.780846 TTGTCTCAACTTCAGTACAACTTTTA 57.219 30.769 0.00 0.00 0.00 1.52
2658 4803 8.420374 TGTCTCAACTTCAGTACAACTTTTAG 57.580 34.615 0.00 0.00 0.00 1.85
2659 4804 8.038944 TGTCTCAACTTCAGTACAACTTTTAGT 58.961 33.333 0.00 0.00 0.00 2.24
2660 4805 9.525409 GTCTCAACTTCAGTACAACTTTTAGTA 57.475 33.333 0.00 0.00 0.00 1.82
2661 4806 9.525409 TCTCAACTTCAGTACAACTTTTAGTAC 57.475 33.333 0.00 0.00 40.60 2.73
2662 4807 9.309516 CTCAACTTCAGTACAACTTTTAGTACA 57.690 33.333 0.00 0.00 42.26 2.90
2663 4808 9.656040 TCAACTTCAGTACAACTTTTAGTACAA 57.344 29.630 0.00 0.00 42.26 2.41
2666 4811 9.662947 ACTTCAGTACAACTTTTAGTACAAAGT 57.337 29.630 5.69 5.69 46.85 2.66
2685 4830 7.130269 ACAAAGTTGTACTAAAATTGAGACGC 58.870 34.615 0.00 0.00 40.16 5.19
2686 4831 7.012044 ACAAAGTTGTACTAAAATTGAGACGCT 59.988 33.333 0.00 0.00 40.16 5.07
2687 4832 7.492352 AAGTTGTACTAAAATTGAGACGCTT 57.508 32.000 0.00 0.00 0.00 4.68
2688 4833 8.597662 AAGTTGTACTAAAATTGAGACGCTTA 57.402 30.769 0.00 0.00 0.00 3.09
2689 4834 8.773404 AGTTGTACTAAAATTGAGACGCTTAT 57.227 30.769 0.00 0.00 0.00 1.73
2690 4835 9.216117 AGTTGTACTAAAATTGAGACGCTTATT 57.784 29.630 0.00 0.00 0.00 1.40
2691 4836 9.821662 GTTGTACTAAAATTGAGACGCTTATTT 57.178 29.630 0.00 0.00 0.00 1.40
2693 4838 9.820229 TGTACTAAAATTGAGACGCTTATTTTG 57.180 29.630 15.41 11.26 33.59 2.44
2694 4839 9.274065 GTACTAAAATTGAGACGCTTATTTTGG 57.726 33.333 15.41 14.98 35.71 3.28
2695 4840 7.312899 ACTAAAATTGAGACGCTTATTTTGGG 58.687 34.615 17.24 13.47 34.64 4.12
2696 4841 5.975693 AAATTGAGACGCTTATTTTGGGA 57.024 34.783 0.00 0.00 0.00 4.37
2697 4842 4.965119 ATTGAGACGCTTATTTTGGGAC 57.035 40.909 0.00 0.00 0.00 4.46
2698 4843 2.343101 TGAGACGCTTATTTTGGGACG 58.657 47.619 0.00 0.00 0.00 4.79
2699 4844 1.664151 GAGACGCTTATTTTGGGACGG 59.336 52.381 0.00 0.00 0.00 4.79
2700 4845 1.276989 AGACGCTTATTTTGGGACGGA 59.723 47.619 0.00 0.00 0.00 4.69
2701 4846 1.664151 GACGCTTATTTTGGGACGGAG 59.336 52.381 0.00 0.00 0.00 4.63
2702 4847 1.014352 CGCTTATTTTGGGACGGAGG 58.986 55.000 0.00 0.00 0.00 4.30
2703 4848 1.389555 GCTTATTTTGGGACGGAGGG 58.610 55.000 0.00 0.00 0.00 4.30
2704 4849 1.064979 GCTTATTTTGGGACGGAGGGA 60.065 52.381 0.00 0.00 0.00 4.20
2705 4850 2.919228 CTTATTTTGGGACGGAGGGAG 58.081 52.381 0.00 0.00 0.00 4.30
2718 4863 3.583086 ACGGAGGGAGTATATTGGAATGG 59.417 47.826 0.00 0.00 0.00 3.16
2721 4866 4.327680 GAGGGAGTATATTGGAATGGTGC 58.672 47.826 0.00 0.00 0.00 5.01
2727 4872 3.668141 ATATTGGAATGGTGCTGGTGA 57.332 42.857 0.00 0.00 0.00 4.02
2734 4879 3.509575 GGAATGGTGCTGGTGACATTTTA 59.490 43.478 0.00 0.00 41.51 1.52
2743 4888 4.399303 GCTGGTGACATTTTAAGCCATACT 59.601 41.667 0.00 0.00 41.51 2.12
2756 4904 7.843490 TTAAGCCATACTCACTGTATTTGTC 57.157 36.000 0.00 0.00 39.66 3.18
2763 4911 9.345517 CCATACTCACTGTATTTGTCATTTTTG 57.654 33.333 0.00 0.00 39.66 2.44
2820 4970 7.060421 TCCATTATTTCTCATAAACCTGACCC 58.940 38.462 0.00 0.00 0.00 4.46
2831 4984 0.114954 ACCTGACCCAACAATGGCAT 59.885 50.000 0.00 0.00 46.09 4.40
2836 4989 1.134946 GACCCAACAATGGCATGTAGC 59.865 52.381 0.00 0.00 46.09 3.58
2854 5007 0.465278 GCCTGGAGCTGGAGGAATTC 60.465 60.000 11.22 0.00 38.99 2.17
2858 5011 1.757118 TGGAGCTGGAGGAATTCGTAG 59.243 52.381 0.00 0.00 0.00 3.51
2862 5015 2.168728 AGCTGGAGGAATTCGTAGTTCC 59.831 50.000 0.00 7.75 44.39 3.62
2876 5031 2.262423 AGTTCCGAAAGAGCTTGCTT 57.738 45.000 0.00 0.00 30.76 3.91
2907 5062 7.372396 CCTGTTTTCGGAATAATTAATCGAACG 59.628 37.037 15.51 6.08 39.14 3.95
2925 5080 4.201532 CGAACGACTATTTGCTTCTCTGTG 60.202 45.833 0.00 0.00 0.00 3.66
2931 5397 4.757149 ACTATTTGCTTCTCTGTGGTGTTC 59.243 41.667 0.00 0.00 0.00 3.18
2948 5414 7.663905 TGTGGTGTTCAATTTGCTAGTAGTTAT 59.336 33.333 0.00 0.00 0.00 1.89
2975 5441 5.472137 TGGTAACCTCATTAACTGTTTGCTC 59.528 40.000 0.00 0.00 31.05 4.26
2982 5448 6.092807 CCTCATTAACTGTTTGCTCCTCTTAC 59.907 42.308 0.00 0.00 0.00 2.34
2983 5449 6.530120 TCATTAACTGTTTGCTCCTCTTACA 58.470 36.000 0.00 0.00 0.00 2.41
2987 5453 3.136626 ACTGTTTGCTCCTCTTACAAGGT 59.863 43.478 0.00 0.00 37.69 3.50
3001 5467 3.715628 ACAAGGTGATGCTTGACAAAC 57.284 42.857 0.00 0.00 34.88 2.93
3003 5469 1.238439 AGGTGATGCTTGACAAACGG 58.762 50.000 0.00 0.00 0.00 4.44
3005 5471 1.069227 GGTGATGCTTGACAAACGGAC 60.069 52.381 0.00 0.00 0.00 4.79
3170 5637 0.394216 TGGCATTGCTATTGGTCGCT 60.394 50.000 8.82 0.00 0.00 4.93
3322 5789 2.783609 TCTCAGACGCCTACTACTGT 57.216 50.000 0.00 0.00 0.00 3.55
3468 5935 1.281925 ATGGATTTGGCGGGTCCTCT 61.282 55.000 3.96 0.00 35.26 3.69
3469 5936 0.619255 TGGATTTGGCGGGTCCTCTA 60.619 55.000 3.96 0.00 35.26 2.43
3477 5946 2.128507 CGGGTCCTCTAGGCCTCAC 61.129 68.421 9.68 0.00 33.64 3.51
3550 6019 3.676172 GTGTCCGTGTTATCGTTTGATCA 59.324 43.478 0.00 0.00 35.99 2.92
3552 6021 5.517411 GTGTCCGTGTTATCGTTTGATCATA 59.483 40.000 0.00 0.00 35.99 2.15
3590 6059 5.477510 GTCCCTGATATGCTCTGTAATGAG 58.522 45.833 0.00 0.00 37.16 2.90
3623 6092 7.990886 TGTTGTATGGTTCAAAACTCTAGACTT 59.009 33.333 0.00 0.00 0.00 3.01
3627 6096 5.611374 TGGTTCAAAACTCTAGACTTCCTG 58.389 41.667 0.00 0.00 0.00 3.86
3699 6168 1.410153 GCTGGGATGGCCTTTTGTATG 59.590 52.381 3.32 0.00 0.00 2.39
3756 6226 8.837788 TGAGATATGGCTGTAATGTAGAAATG 57.162 34.615 0.00 0.00 0.00 2.32
3768 6238 3.544684 TGTAGAAATGCATGCTGGTAGG 58.455 45.455 20.33 0.00 0.00 3.18
3776 6246 2.092267 TGCATGCTGGTAGGTGATCATT 60.092 45.455 20.33 0.00 0.00 2.57
3786 6256 4.141620 GGTAGGTGATCATTCCTGATGTGT 60.142 45.833 13.81 0.00 42.27 3.72
3792 6262 6.543465 GGTGATCATTCCTGATGTGTTTATGA 59.457 38.462 0.00 0.00 42.27 2.15
3793 6263 7.067372 GGTGATCATTCCTGATGTGTTTATGAA 59.933 37.037 0.00 0.00 42.27 2.57
3794 6264 8.127327 GTGATCATTCCTGATGTGTTTATGAAG 58.873 37.037 0.00 0.00 42.27 3.02
3795 6265 7.830697 TGATCATTCCTGATGTGTTTATGAAGT 59.169 33.333 0.00 0.00 42.27 3.01
3796 6266 8.585471 ATCATTCCTGATGTGTTTATGAAGTT 57.415 30.769 0.00 0.00 40.66 2.66
3797 6267 7.819644 TCATTCCTGATGTGTTTATGAAGTTG 58.180 34.615 0.00 0.00 37.06 3.16
3798 6268 7.448161 TCATTCCTGATGTGTTTATGAAGTTGT 59.552 33.333 0.00 0.00 37.06 3.32
3799 6269 6.558771 TCCTGATGTGTTTATGAAGTTGTG 57.441 37.500 0.00 0.00 0.00 3.33
3803 6273 8.896744 CCTGATGTGTTTATGAAGTTGTGATAT 58.103 33.333 0.00 0.00 0.00 1.63
3830 6300 3.055094 TCAGCTGGAAGTAGGGATTCAAC 60.055 47.826 15.13 0.00 35.30 3.18
3831 6301 3.054802 CAGCTGGAAGTAGGGATTCAACT 60.055 47.826 5.57 0.00 35.30 3.16
3914 6396 4.082125 CACCCCAAGCTGAAAGTAATCTT 58.918 43.478 0.00 0.00 35.30 2.40
3923 6405 7.313951 AGCTGAAAGTAATCTTAATCAGTGC 57.686 36.000 0.00 0.00 39.14 4.40
3971 7152 4.400251 ACCATGTATGCACTTTCAGGATTG 59.600 41.667 0.00 0.00 0.00 2.67
3991 7172 7.792736 AGGATTGTGTACTTGTATAGGGGATAA 59.207 37.037 0.00 0.00 0.00 1.75
3992 7173 7.876582 GGATTGTGTACTTGTATAGGGGATAAC 59.123 40.741 0.00 0.00 0.00 1.89
3993 7174 6.736110 TGTGTACTTGTATAGGGGATAACC 57.264 41.667 0.00 0.00 39.11 2.85
3994 7175 6.446451 TGTGTACTTGTATAGGGGATAACCT 58.554 40.000 0.00 0.00 44.75 3.50
3996 7177 8.066867 TGTGTACTTGTATAGGGGATAACCTAA 58.933 37.037 0.00 0.00 45.69 2.69
3997 7178 8.583296 GTGTACTTGTATAGGGGATAACCTAAG 58.417 40.741 0.00 0.00 45.69 2.18
3998 7179 6.683312 ACTTGTATAGGGGATAACCTAAGC 57.317 41.667 0.00 0.00 45.69 3.09
3999 7180 5.245526 ACTTGTATAGGGGATAACCTAAGCG 59.754 44.000 0.00 0.00 45.69 4.68
4024 7643 8.321716 CGACTATGTAGCTTCAGTATTTTGTTC 58.678 37.037 0.00 0.00 0.00 3.18
4109 7744 4.033684 GGTTGTAGTAAGTCGTATCTGCG 58.966 47.826 0.00 0.00 0.00 5.18
4137 7774 3.872511 TGCAGGGCATAACAAATTGAG 57.127 42.857 0.00 0.00 31.71 3.02
4159 7796 4.763793 AGAATTCTGTGGTTTGATCACCTG 59.236 41.667 7.30 0.00 37.75 4.00
4250 8518 9.798885 GCAATGACAGAATACTATTTATTCGTC 57.201 33.333 14.89 14.89 38.56 4.20
4269 8547 4.214758 TCGTCAGTTCTCAAGATTACGTGA 59.785 41.667 0.00 0.00 33.90 4.35
4270 8555 5.096169 CGTCAGTTCTCAAGATTACGTGAT 58.904 41.667 0.00 0.00 34.46 3.06
4379 8669 1.959226 CAGTAACCGTGCTTGCCGT 60.959 57.895 0.00 0.00 0.00 5.68
4529 8826 1.586154 TTCCTTGGCGCTTGCTTAGC 61.586 55.000 7.64 0.00 46.83 3.09
4549 8846 1.226974 CGTCAGCCAATCCGATCGT 60.227 57.895 15.09 0.00 0.00 3.73
4554 8851 0.179073 AGCCAATCCGATCGTCCTTG 60.179 55.000 15.09 13.29 0.00 3.61
4555 8852 0.179084 GCCAATCCGATCGTCCTTGA 60.179 55.000 15.09 3.79 0.00 3.02
4571 11304 9.838339 ATCGTCCTTGATGTTAGAATAAAATCT 57.162 29.630 2.32 0.00 0.00 2.40
4584 11317 5.760253 AGAATAAAATCTGAGGCATACCGTG 59.240 40.000 0.00 0.00 42.76 4.94
4592 11325 0.687354 AGGCATACCGTGGATCATCC 59.313 55.000 0.00 0.00 42.76 3.51
4593 11326 0.670546 GGCATACCGTGGATCATCCG 60.671 60.000 0.00 0.00 40.17 4.18
4607 11340 2.115427 TCATCCGAGGACCAAGCAATA 58.885 47.619 0.00 0.00 0.00 1.90
4608 11341 2.158957 TCATCCGAGGACCAAGCAATAC 60.159 50.000 0.00 0.00 0.00 1.89
4609 11342 1.271856 TCCGAGGACCAAGCAATACA 58.728 50.000 0.00 0.00 0.00 2.29
4610 11343 1.837439 TCCGAGGACCAAGCAATACAT 59.163 47.619 0.00 0.00 0.00 2.29
4644 11378 4.630069 CCGAGATTTGTTAACGAGGTTCAT 59.370 41.667 0.26 0.00 0.00 2.57
4675 11410 3.115017 ATCCCCGGGGCCTGACTAT 62.115 63.158 36.68 18.72 34.68 2.12
4679 11414 2.768344 CGGGGCCTGACTATGGGT 60.768 66.667 6.48 0.00 0.00 4.51
4680 11415 1.458777 CGGGGCCTGACTATGGGTA 60.459 63.158 6.48 0.00 0.00 3.69
4713 11449 1.885850 CCGCTACAATACCGCACCC 60.886 63.158 0.00 0.00 0.00 4.61
4714 11450 1.143183 CGCTACAATACCGCACCCT 59.857 57.895 0.00 0.00 0.00 4.34
4773 11510 2.869801 GCGTGCCTGTGCTATTATGTTA 59.130 45.455 0.00 0.00 38.71 2.41
4775 11512 4.119862 CGTGCCTGTGCTATTATGTTAGT 58.880 43.478 0.00 0.00 38.71 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.740397 CCGAGCGACCGTGGTACA 61.740 66.667 0.00 0.00 0.00 2.90
69 70 9.539825 CAGAACATGCACTTAGTATCTTCTATT 57.460 33.333 0.00 0.00 29.26 1.73
239 242 5.587844 TGCAATCTCTTCTTTTCATCTAGCC 59.412 40.000 0.00 0.00 0.00 3.93
240 243 6.674694 TGCAATCTCTTCTTTTCATCTAGC 57.325 37.500 0.00 0.00 0.00 3.42
410 888 5.788699 GGGTTACCACTTGTCTAGGGACAA 61.789 50.000 2.98 10.49 46.30 3.18
644 2642 3.452264 TGTGAATCCATCTCGAACTCCAT 59.548 43.478 0.00 0.00 0.00 3.41
686 2684 1.228552 AGTCCACCCTGCGCAAATT 60.229 52.632 13.05 0.00 0.00 1.82
689 2687 2.803155 GATGAGTCCACCCTGCGCAA 62.803 60.000 13.05 0.00 0.00 4.85
751 2749 6.983906 ATGGAAAAGAAAGAGAACCACAAT 57.016 33.333 0.00 0.00 0.00 2.71
777 2775 3.631145 TCGCACTACGTCTACAAACTT 57.369 42.857 0.00 0.00 44.19 2.66
865 2863 0.249120 CACGGGCTGGTACATCAGAA 59.751 55.000 0.00 0.00 38.20 3.02
999 2997 6.238648 GCTACAAGAAGCTTGTACTCCAAAAA 60.239 38.462 2.10 0.00 39.50 1.94
1001 2999 4.755123 GCTACAAGAAGCTTGTACTCCAAA 59.245 41.667 2.10 0.00 39.50 3.28
1003 3001 3.323691 TGCTACAAGAAGCTTGTACTCCA 59.676 43.478 2.10 9.80 43.19 3.86
1004 3002 3.680458 GTGCTACAAGAAGCTTGTACTCC 59.320 47.826 2.10 7.89 43.19 3.85
1005 3003 3.680458 GGTGCTACAAGAAGCTTGTACTC 59.320 47.826 2.10 10.32 43.19 2.59
1006 3004 3.557264 GGGTGCTACAAGAAGCTTGTACT 60.557 47.826 2.10 0.00 43.19 2.73
1030 3062 1.882352 GCTGCTTCCTTTTTCGAGGGA 60.882 52.381 0.00 0.00 37.41 4.20
1165 3200 1.173913 GAGGTTTTGGATTCGGTGGG 58.826 55.000 0.00 0.00 0.00 4.61
1238 3273 4.208686 CCCCTACTCGAGCCGCAC 62.209 72.222 13.61 0.00 0.00 5.34
1476 3542 3.459598 TGCTAGCCTCCAATTCCACTTAT 59.540 43.478 13.29 0.00 0.00 1.73
1480 3546 2.128771 TTGCTAGCCTCCAATTCCAC 57.871 50.000 13.29 0.00 0.00 4.02
1524 3590 5.601729 TGAGAGTTAGGCTCATCAATCATCT 59.398 40.000 0.00 0.00 46.47 2.90
1570 3638 7.701539 TTGACACATCAAAGTAAATAGCCAT 57.298 32.000 0.00 0.00 41.99 4.40
1596 3664 8.107399 AGCTTCCCAAAGTATTTACTAAACAC 57.893 34.615 0.00 0.00 35.03 3.32
1604 3672 5.636123 TGGACAAGCTTCCCAAAGTATTTA 58.364 37.500 13.22 0.00 33.09 1.40
1610 3678 2.224042 GGTTTGGACAAGCTTCCCAAAG 60.224 50.000 29.11 9.57 46.74 2.77
1613 3681 0.555769 AGGTTTGGACAAGCTTCCCA 59.444 50.000 11.92 11.92 34.33 4.37
1629 3697 3.959495 ATCACCAAATGCAGGATAGGT 57.041 42.857 0.00 0.00 0.00 3.08
1643 3711 7.534085 CGCAAGTTCTAAGTTATAATCACCA 57.466 36.000 0.00 0.00 0.00 4.17
1666 3736 8.120465 GGAGTATATGACAAAACACCATAAACG 58.880 37.037 0.00 0.00 0.00 3.60
1674 3744 5.815740 ACGGATGGAGTATATGACAAAACAC 59.184 40.000 0.00 0.00 0.00 3.32
1689 3759 4.023279 TGTTGAATTTGTGAACGGATGGAG 60.023 41.667 0.00 0.00 0.00 3.86
1690 3760 3.885901 TGTTGAATTTGTGAACGGATGGA 59.114 39.130 0.00 0.00 0.00 3.41
1692 3762 4.229096 CCTGTTGAATTTGTGAACGGATG 58.771 43.478 0.00 0.00 0.00 3.51
1693 3763 3.888930 ACCTGTTGAATTTGTGAACGGAT 59.111 39.130 0.00 0.00 0.00 4.18
1695 3765 3.708563 ACCTGTTGAATTTGTGAACGG 57.291 42.857 0.00 0.00 0.00 4.44
1697 3767 5.872070 TCCAAAACCTGTTGAATTTGTGAAC 59.128 36.000 0.00 0.00 32.29 3.18
1698 3768 6.042638 TCCAAAACCTGTTGAATTTGTGAA 57.957 33.333 0.00 0.00 32.29 3.18
1700 3770 8.606040 AATATCCAAAACCTGTTGAATTTGTG 57.394 30.769 0.00 0.00 32.29 3.33
1701 3771 9.271828 GAAATATCCAAAACCTGTTGAATTTGT 57.728 29.630 0.00 0.00 32.29 2.83
1702 3772 9.270640 TGAAATATCCAAAACCTGTTGAATTTG 57.729 29.630 0.00 0.00 33.62 2.32
1708 3778 9.316730 CCATAATGAAATATCCAAAACCTGTTG 57.683 33.333 0.00 0.00 0.00 3.33
1709 3779 9.265862 TCCATAATGAAATATCCAAAACCTGTT 57.734 29.630 0.00 0.00 0.00 3.16
1710 3780 8.837099 TCCATAATGAAATATCCAAAACCTGT 57.163 30.769 0.00 0.00 0.00 4.00
1711 3781 8.917088 ACTCCATAATGAAATATCCAAAACCTG 58.083 33.333 0.00 0.00 0.00 4.00
1718 3788 9.869757 CGTATGTACTCCATAATGAAATATCCA 57.130 33.333 0.00 0.00 37.77 3.41
1719 3789 9.314321 CCGTATGTACTCCATAATGAAATATCC 57.686 37.037 0.00 0.00 37.77 2.59
1721 3791 9.871238 GTCCGTATGTACTCCATAATGAAATAT 57.129 33.333 0.00 0.00 37.77 1.28
1722 3792 9.085645 AGTCCGTATGTACTCCATAATGAAATA 57.914 33.333 0.00 0.00 37.77 1.40
1723 3793 7.872993 CAGTCCGTATGTACTCCATAATGAAAT 59.127 37.037 0.00 0.00 37.77 2.17
1724 3794 7.068962 TCAGTCCGTATGTACTCCATAATGAAA 59.931 37.037 0.00 0.00 37.77 2.69
1725 3795 6.548251 TCAGTCCGTATGTACTCCATAATGAA 59.452 38.462 0.00 0.00 37.77 2.57
1726 3796 6.066032 TCAGTCCGTATGTACTCCATAATGA 58.934 40.000 0.00 0.00 37.77 2.57
1727 3797 6.327279 TCAGTCCGTATGTACTCCATAATG 57.673 41.667 0.00 0.00 37.77 1.90
1728 3798 6.971726 TTCAGTCCGTATGTACTCCATAAT 57.028 37.500 0.00 0.00 37.77 1.28
1729 3799 6.778834 TTTCAGTCCGTATGTACTCCATAA 57.221 37.500 0.00 0.00 37.77 1.90
1730 3800 6.548251 TCATTTCAGTCCGTATGTACTCCATA 59.452 38.462 0.00 0.00 34.86 2.74
1731 3801 5.362717 TCATTTCAGTCCGTATGTACTCCAT 59.637 40.000 0.00 0.00 37.58 3.41
1732 3802 4.707934 TCATTTCAGTCCGTATGTACTCCA 59.292 41.667 0.00 0.00 0.00 3.86
1733 3803 5.163540 ACTCATTTCAGTCCGTATGTACTCC 60.164 44.000 0.00 0.00 0.00 3.85
1734 3804 5.744345 CACTCATTTCAGTCCGTATGTACTC 59.256 44.000 0.00 0.00 0.00 2.59
1735 3805 5.417894 TCACTCATTTCAGTCCGTATGTACT 59.582 40.000 0.00 0.00 0.00 2.73
1736 3806 5.647589 TCACTCATTTCAGTCCGTATGTAC 58.352 41.667 0.00 0.00 0.00 2.90
1737 3807 5.907866 TCACTCATTTCAGTCCGTATGTA 57.092 39.130 0.00 0.00 0.00 2.29
1738 3808 4.801330 TCACTCATTTCAGTCCGTATGT 57.199 40.909 0.00 0.00 0.00 2.29
1739 3809 4.929211 TGTTCACTCATTTCAGTCCGTATG 59.071 41.667 0.00 0.00 0.00 2.39
1740 3810 5.147330 TGTTCACTCATTTCAGTCCGTAT 57.853 39.130 0.00 0.00 0.00 3.06
1741 3811 4.594123 TGTTCACTCATTTCAGTCCGTA 57.406 40.909 0.00 0.00 0.00 4.02
1742 3812 3.469008 TGTTCACTCATTTCAGTCCGT 57.531 42.857 0.00 0.00 0.00 4.69
1743 3813 4.035091 TGTTTGTTCACTCATTTCAGTCCG 59.965 41.667 0.00 0.00 0.00 4.79
1744 3814 5.163663 TGTGTTTGTTCACTCATTTCAGTCC 60.164 40.000 0.00 0.00 38.90 3.85
1745 3815 5.739161 GTGTGTTTGTTCACTCATTTCAGTC 59.261 40.000 0.00 0.00 38.90 3.51
1746 3816 5.393027 GGTGTGTTTGTTCACTCATTTCAGT 60.393 40.000 0.00 0.00 38.90 3.41
1747 3817 5.036737 GGTGTGTTTGTTCACTCATTTCAG 58.963 41.667 0.00 0.00 38.90 3.02
1748 3818 4.142271 GGGTGTGTTTGTTCACTCATTTCA 60.142 41.667 0.00 0.00 38.90 2.69
1749 3819 4.142271 TGGGTGTGTTTGTTCACTCATTTC 60.142 41.667 0.00 0.00 39.67 2.17
1750 3820 3.766591 TGGGTGTGTTTGTTCACTCATTT 59.233 39.130 0.00 0.00 39.67 2.32
1751 3821 3.360867 TGGGTGTGTTTGTTCACTCATT 58.639 40.909 0.00 0.00 39.67 2.57
1752 3822 3.011566 TGGGTGTGTTTGTTCACTCAT 57.988 42.857 0.00 0.00 39.67 2.90
1753 3823 2.498644 TGGGTGTGTTTGTTCACTCA 57.501 45.000 0.00 0.00 41.85 3.41
1754 3824 3.507786 GTTTGGGTGTGTTTGTTCACTC 58.492 45.455 0.00 0.00 38.90 3.51
1755 3825 2.094957 CGTTTGGGTGTGTTTGTTCACT 60.095 45.455 0.00 0.00 38.90 3.41
1756 3826 2.255316 CGTTTGGGTGTGTTTGTTCAC 58.745 47.619 0.00 0.00 38.63 3.18
1757 3827 1.887198 ACGTTTGGGTGTGTTTGTTCA 59.113 42.857 0.00 0.00 0.00 3.18
1758 3828 2.255316 CACGTTTGGGTGTGTTTGTTC 58.745 47.619 0.00 0.00 33.24 3.18
1759 3829 2.355717 CACGTTTGGGTGTGTTTGTT 57.644 45.000 0.00 0.00 33.24 2.83
1767 3837 6.019075 CACATGTATATAGACACGTTTGGGTG 60.019 42.308 1.52 0.00 43.54 4.61
1768 3838 6.046593 CACATGTATATAGACACGTTTGGGT 58.953 40.000 1.52 0.00 30.52 4.51
1769 3839 6.277605 TCACATGTATATAGACACGTTTGGG 58.722 40.000 1.52 0.00 30.52 4.12
1770 3840 7.764695 TTCACATGTATATAGACACGTTTGG 57.235 36.000 1.52 0.00 30.52 3.28
1771 3841 9.030301 TGATTCACATGTATATAGACACGTTTG 57.970 33.333 1.52 0.00 30.52 2.93
1772 3842 9.249457 CTGATTCACATGTATATAGACACGTTT 57.751 33.333 1.52 0.00 30.52 3.60
1773 3843 8.630037 TCTGATTCACATGTATATAGACACGTT 58.370 33.333 1.52 0.00 30.52 3.99
1774 3844 8.166422 TCTGATTCACATGTATATAGACACGT 57.834 34.615 1.52 0.00 30.52 4.49
1775 3845 9.463443 TTTCTGATTCACATGTATATAGACACG 57.537 33.333 1.52 0.00 30.52 4.49
1784 3854 9.453572 TTCTAGCTTTTTCTGATTCACATGTAT 57.546 29.630 0.00 0.00 0.00 2.29
1785 3855 8.721478 GTTCTAGCTTTTTCTGATTCACATGTA 58.279 33.333 0.00 0.00 0.00 2.29
1786 3856 7.229306 TGTTCTAGCTTTTTCTGATTCACATGT 59.771 33.333 0.00 0.00 0.00 3.21
1787 3857 7.587629 TGTTCTAGCTTTTTCTGATTCACATG 58.412 34.615 0.00 0.00 0.00 3.21
1788 3858 7.750229 TGTTCTAGCTTTTTCTGATTCACAT 57.250 32.000 0.00 0.00 0.00 3.21
1789 3859 7.663081 AGATGTTCTAGCTTTTTCTGATTCACA 59.337 33.333 0.00 0.00 0.00 3.58
1790 3860 8.038492 AGATGTTCTAGCTTTTTCTGATTCAC 57.962 34.615 0.00 0.00 0.00 3.18
1791 3861 8.627208 AAGATGTTCTAGCTTTTTCTGATTCA 57.373 30.769 0.00 0.00 28.74 2.57
1803 3873 9.035607 CGTTCACAAATATAAGATGTTCTAGCT 57.964 33.333 0.00 0.00 0.00 3.32
1804 3874 8.276325 CCGTTCACAAATATAAGATGTTCTAGC 58.724 37.037 0.00 0.00 0.00 3.42
1805 3875 9.529325 TCCGTTCACAAATATAAGATGTTCTAG 57.471 33.333 0.00 0.00 0.00 2.43
1806 3876 9.529325 CTCCGTTCACAAATATAAGATGTTCTA 57.471 33.333 0.00 0.00 0.00 2.10
1807 3877 7.495934 CCTCCGTTCACAAATATAAGATGTTCT 59.504 37.037 0.00 0.00 0.00 3.01
1808 3878 7.254795 CCCTCCGTTCACAAATATAAGATGTTC 60.255 40.741 0.00 0.00 0.00 3.18
1809 3879 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
1810 3880 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
1811 3881 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
1812 3882 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
1813 3883 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
1814 3884 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
1815 3885 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
1816 3886 6.989155 ATACTCCCTCCGTTCACAAATATA 57.011 37.500 0.00 0.00 0.00 0.86
1817 3887 5.888982 ATACTCCCTCCGTTCACAAATAT 57.111 39.130 0.00 0.00 0.00 1.28
1818 3888 5.687166 AATACTCCCTCCGTTCACAAATA 57.313 39.130 0.00 0.00 0.00 1.40
1819 3889 4.569719 AATACTCCCTCCGTTCACAAAT 57.430 40.909 0.00 0.00 0.00 2.32
1820 3890 4.360951 AAATACTCCCTCCGTTCACAAA 57.639 40.909 0.00 0.00 0.00 2.83
1821 3891 4.360951 AAAATACTCCCTCCGTTCACAA 57.639 40.909 0.00 0.00 0.00 3.33
1822 3892 4.360951 AAAAATACTCCCTCCGTTCACA 57.639 40.909 0.00 0.00 0.00 3.58
1823 3893 5.727434 TCTAAAAATACTCCCTCCGTTCAC 58.273 41.667 0.00 0.00 0.00 3.18
1824 3894 5.718130 TCTCTAAAAATACTCCCTCCGTTCA 59.282 40.000 0.00 0.00 0.00 3.18
1825 3895 6.218108 TCTCTAAAAATACTCCCTCCGTTC 57.782 41.667 0.00 0.00 0.00 3.95
1826 3896 6.616237 TTCTCTAAAAATACTCCCTCCGTT 57.384 37.500 0.00 0.00 0.00 4.44
1827 3897 6.616237 TTTCTCTAAAAATACTCCCTCCGT 57.384 37.500 0.00 0.00 0.00 4.69
1828 3898 7.278203 GTCTTTTCTCTAAAAATACTCCCTCCG 59.722 40.741 0.00 0.00 34.26 4.63
1829 3899 7.278203 CGTCTTTTCTCTAAAAATACTCCCTCC 59.722 40.741 0.00 0.00 34.26 4.30
1830 3900 7.201539 GCGTCTTTTCTCTAAAAATACTCCCTC 60.202 40.741 0.00 0.00 34.26 4.30
1831 3901 6.594547 GCGTCTTTTCTCTAAAAATACTCCCT 59.405 38.462 0.00 0.00 34.26 4.20
1832 3902 6.370718 TGCGTCTTTTCTCTAAAAATACTCCC 59.629 38.462 0.00 0.00 34.26 4.30
1833 3903 7.360575 TGCGTCTTTTCTCTAAAAATACTCC 57.639 36.000 0.00 0.00 34.26 3.85
1834 3904 6.956520 GCTGCGTCTTTTCTCTAAAAATACTC 59.043 38.462 0.00 0.00 34.26 2.59
1835 3905 6.128254 GGCTGCGTCTTTTCTCTAAAAATACT 60.128 38.462 0.00 0.00 34.26 2.12
1836 3906 6.022208 GGCTGCGTCTTTTCTCTAAAAATAC 58.978 40.000 0.00 0.00 34.26 1.89
1837 3907 5.163893 CGGCTGCGTCTTTTCTCTAAAAATA 60.164 40.000 0.00 0.00 34.26 1.40
1838 3908 4.378459 CGGCTGCGTCTTTTCTCTAAAAAT 60.378 41.667 0.00 0.00 34.26 1.82
1839 3909 3.059188 CGGCTGCGTCTTTTCTCTAAAAA 60.059 43.478 0.00 0.00 34.26 1.94
1840 3910 2.478894 CGGCTGCGTCTTTTCTCTAAAA 59.521 45.455 0.00 0.00 33.58 1.52
1841 3911 2.066262 CGGCTGCGTCTTTTCTCTAAA 58.934 47.619 0.00 0.00 0.00 1.85
1842 3912 1.271379 TCGGCTGCGTCTTTTCTCTAA 59.729 47.619 0.00 0.00 0.00 2.10
1843 3913 0.885879 TCGGCTGCGTCTTTTCTCTA 59.114 50.000 0.00 0.00 0.00 2.43
1844 3914 0.389166 CTCGGCTGCGTCTTTTCTCT 60.389 55.000 0.00 0.00 0.00 3.10
1845 3915 0.667792 ACTCGGCTGCGTCTTTTCTC 60.668 55.000 0.00 0.00 0.00 2.87
1846 3916 0.667792 GACTCGGCTGCGTCTTTTCT 60.668 55.000 8.44 0.00 0.00 2.52
1847 3917 1.627550 GGACTCGGCTGCGTCTTTTC 61.628 60.000 14.98 0.00 30.52 2.29
1848 3918 1.668151 GGACTCGGCTGCGTCTTTT 60.668 57.895 14.98 0.00 30.52 2.27
1849 3919 2.048127 GGACTCGGCTGCGTCTTT 60.048 61.111 14.98 0.00 30.52 2.52
1850 3920 2.771763 CTTGGACTCGGCTGCGTCTT 62.772 60.000 14.98 0.00 30.52 3.01
1851 3921 3.288308 CTTGGACTCGGCTGCGTCT 62.288 63.158 14.98 0.00 30.52 4.18
1852 3922 2.765250 TTCTTGGACTCGGCTGCGTC 62.765 60.000 7.14 7.14 0.00 5.19
1853 3923 2.771763 CTTCTTGGACTCGGCTGCGT 62.772 60.000 0.00 0.00 0.00 5.24
1854 3924 2.048222 TTCTTGGACTCGGCTGCG 60.048 61.111 0.00 0.00 0.00 5.18
1855 3925 1.743252 CCTTCTTGGACTCGGCTGC 60.743 63.158 0.00 0.00 38.35 5.25
1856 3926 1.975327 TCCTTCTTGGACTCGGCTG 59.025 57.895 0.00 0.00 40.56 4.85
1857 3927 4.541213 TCCTTCTTGGACTCGGCT 57.459 55.556 0.00 0.00 40.56 5.52
1864 3934 0.832135 AGGTGCGAGTCCTTCTTGGA 60.832 55.000 0.00 0.00 43.86 3.53
1865 3935 0.035458 AAGGTGCGAGTCCTTCTTGG 59.965 55.000 0.00 0.00 40.80 3.61
1866 3936 1.151668 CAAGGTGCGAGTCCTTCTTG 58.848 55.000 3.79 0.00 42.57 3.02
1867 3937 0.603975 GCAAGGTGCGAGTCCTTCTT 60.604 55.000 3.79 0.00 42.57 2.52
1868 3938 1.004440 GCAAGGTGCGAGTCCTTCT 60.004 57.895 3.79 0.00 42.57 2.85
1869 3939 2.035442 GGCAAGGTGCGAGTCCTTC 61.035 63.158 3.79 1.19 46.21 3.46
1870 3940 1.192146 TAGGCAAGGTGCGAGTCCTT 61.192 55.000 0.00 0.00 46.21 3.36
1871 3941 1.609501 TAGGCAAGGTGCGAGTCCT 60.610 57.895 0.00 0.00 46.21 3.85
1872 3942 1.448013 GTAGGCAAGGTGCGAGTCC 60.448 63.158 0.00 0.00 46.21 3.85
1873 3943 0.320421 TTGTAGGCAAGGTGCGAGTC 60.320 55.000 0.00 0.00 46.21 3.36
1874 3944 0.324943 ATTGTAGGCAAGGTGCGAGT 59.675 50.000 0.00 0.00 46.21 4.18
1875 3945 1.131126 CAATTGTAGGCAAGGTGCGAG 59.869 52.381 0.00 0.00 46.21 5.03
1876 3946 1.164411 CAATTGTAGGCAAGGTGCGA 58.836 50.000 0.00 0.00 46.21 5.10
1877 3947 1.164411 TCAATTGTAGGCAAGGTGCG 58.836 50.000 5.13 0.00 46.21 5.34
1878 3948 2.754552 TCATCAATTGTAGGCAAGGTGC 59.245 45.455 5.13 0.00 44.08 5.01
1879 3949 4.400251 ACATCATCAATTGTAGGCAAGGTG 59.600 41.667 5.13 0.00 38.10 4.00
1880 3950 4.400251 CACATCATCAATTGTAGGCAAGGT 59.600 41.667 5.13 0.00 38.10 3.50
1883 3953 3.700539 CCCACATCATCAATTGTAGGCAA 59.299 43.478 5.13 0.00 39.16 4.52
1937 4008 1.788518 TACCATGGCCCACAGCAGTT 61.789 55.000 13.04 0.00 46.50 3.16
1945 4016 1.434188 CTCCAGTATACCATGGCCCA 58.566 55.000 13.04 0.00 36.47 5.36
1946 4017 0.036875 GCTCCAGTATACCATGGCCC 59.963 60.000 13.04 0.00 36.47 5.80
1966 4037 1.226916 TGGCAACAGCAAAGCAACG 60.227 52.632 0.00 0.00 46.17 4.10
1996 4068 2.040278 ACCTAAACAGCCAAGATGAGCA 59.960 45.455 0.00 0.00 0.00 4.26
1997 4069 2.716217 ACCTAAACAGCCAAGATGAGC 58.284 47.619 0.00 0.00 0.00 4.26
2001 4073 7.961326 AATTGAATACCTAAACAGCCAAGAT 57.039 32.000 0.00 0.00 0.00 2.40
2036 4108 6.985117 AGTAACCGACTAATTGTAACTCACA 58.015 36.000 0.00 0.00 36.27 3.58
2079 4151 1.641577 AATTACTCGAGCGGTTGAGC 58.358 50.000 27.79 0.00 37.70 4.26
2080 4152 3.250744 TCAAATTACTCGAGCGGTTGAG 58.749 45.455 26.58 26.58 39.85 3.02
2081 4153 3.306917 TCAAATTACTCGAGCGGTTGA 57.693 42.857 13.61 13.91 0.00 3.18
2082 4154 4.600012 ATTCAAATTACTCGAGCGGTTG 57.400 40.909 13.61 11.82 0.00 3.77
2083 4155 5.416947 AGTATTCAAATTACTCGAGCGGTT 58.583 37.500 13.61 1.37 0.00 4.44
2084 4156 5.007385 AGTATTCAAATTACTCGAGCGGT 57.993 39.130 13.61 0.00 0.00 5.68
2085 4157 5.964070 GAAGTATTCAAATTACTCGAGCGG 58.036 41.667 13.61 0.00 46.62 5.52
2139 4211 7.095439 GCATACTGCAATCTAGTGAACCTATTC 60.095 40.741 0.00 0.00 44.26 1.75
2164 4236 4.065088 TCACCTAGTTCACACAGATTTGC 58.935 43.478 0.00 0.00 0.00 3.68
2170 4242 3.685139 ATGGTCACCTAGTTCACACAG 57.315 47.619 0.00 0.00 0.00 3.66
2171 4243 3.389656 TCAATGGTCACCTAGTTCACACA 59.610 43.478 0.00 0.00 0.00 3.72
2172 4244 4.002906 TCAATGGTCACCTAGTTCACAC 57.997 45.455 0.00 0.00 0.00 3.82
2173 4245 4.908601 ATCAATGGTCACCTAGTTCACA 57.091 40.909 0.00 0.00 0.00 3.58
2174 4246 4.396166 CCAATCAATGGTCACCTAGTTCAC 59.604 45.833 0.00 0.00 44.85 3.18
2175 4247 4.588899 CCAATCAATGGTCACCTAGTTCA 58.411 43.478 0.00 0.00 44.85 3.18
2205 4307 3.222173 TCCAAGTTGGAAGCTGCTTAA 57.778 42.857 22.59 4.05 45.00 1.85
2207 4309 3.827505 TCCAAGTTGGAAGCTGCTT 57.172 47.368 22.59 15.92 45.00 3.91
2227 4330 6.924060 GGTATGTTAGGTGATGTGATACTGAC 59.076 42.308 0.00 0.00 0.00 3.51
2232 4335 6.800072 TGTGGTATGTTAGGTGATGTGATA 57.200 37.500 0.00 0.00 0.00 2.15
2266 4373 1.003182 TATGGTAGGTTCCCCCGCA 59.997 57.895 0.00 0.00 38.74 5.69
2267 4374 1.448924 GTATGGTAGGTTCCCCCGC 59.551 63.158 0.00 0.00 38.74 6.13
2268 4375 0.399519 AGGTATGGTAGGTTCCCCCG 60.400 60.000 0.00 0.00 38.74 5.73
2272 4379 3.381335 TCCTTCAGGTATGGTAGGTTCC 58.619 50.000 0.00 0.00 36.34 3.62
2273 4380 4.654262 TGATCCTTCAGGTATGGTAGGTTC 59.346 45.833 0.00 0.00 36.34 3.62
2274 4381 4.631234 TGATCCTTCAGGTATGGTAGGTT 58.369 43.478 0.00 0.00 36.34 3.50
2275 4382 4.280789 TGATCCTTCAGGTATGGTAGGT 57.719 45.455 0.00 0.00 36.34 3.08
2276 4383 5.630415 TTTGATCCTTCAGGTATGGTAGG 57.370 43.478 0.00 0.00 36.34 3.18
2277 4384 6.830912 TGATTTGATCCTTCAGGTATGGTAG 58.169 40.000 0.00 0.00 36.34 3.18
2281 4391 5.475909 CCCATGATTTGATCCTTCAGGTATG 59.524 44.000 0.00 0.00 36.34 2.39
2288 4398 3.823304 GCTACCCCATGATTTGATCCTTC 59.177 47.826 0.00 0.00 0.00 3.46
2293 4403 4.806892 TGAATGCTACCCCATGATTTGAT 58.193 39.130 0.00 0.00 0.00 2.57
2296 4406 3.569491 CCTGAATGCTACCCCATGATTT 58.431 45.455 0.00 0.00 0.00 2.17
2316 4426 2.116125 AAGGTCACTTGCAGCCCC 59.884 61.111 0.00 0.00 35.09 5.80
2328 4438 3.869272 CGCGCTCATGGCAAGGTC 61.869 66.667 5.56 0.00 41.91 3.85
2331 4441 1.512734 GAAACGCGCTCATGGCAAG 60.513 57.895 5.73 0.00 41.91 4.01
2342 4452 1.446099 TGGCTGAGCTAGAAACGCG 60.446 57.895 3.53 3.53 0.00 6.01
2344 4454 2.164624 ACTAGTGGCTGAGCTAGAAACG 59.835 50.000 3.72 0.00 38.36 3.60
2366 4476 0.247460 TGGAGCAGATGTTCTCACCG 59.753 55.000 0.00 0.00 0.00 4.94
2378 4488 1.531423 ACAGCAAATCACTGGAGCAG 58.469 50.000 0.00 0.00 39.55 4.24
2384 4494 4.067896 ACTCAAGGTACAGCAAATCACTG 58.932 43.478 0.00 0.00 41.08 3.66
2394 4504 6.480320 GGCACATATTTCTACTCAAGGTACAG 59.520 42.308 0.00 0.00 0.00 2.74
2399 4509 7.055667 TCTAGGCACATATTTCTACTCAAGG 57.944 40.000 0.00 0.00 0.00 3.61
2412 4523 5.833131 TGACATACTGACATCTAGGCACATA 59.167 40.000 0.00 0.00 0.00 2.29
2447 4564 3.817084 CCATGCAAGGGTACACATCATAG 59.183 47.826 0.00 0.00 29.31 2.23
2450 4567 1.632920 TCCATGCAAGGGTACACATCA 59.367 47.619 8.36 0.00 40.01 3.07
2456 4573 0.811281 GCAGTTCCATGCAAGGGTAC 59.189 55.000 8.36 8.63 45.77 3.34
2467 4584 4.365514 TCATAAAGAAGGTGCAGTTCCA 57.634 40.909 5.31 0.00 0.00 3.53
2475 4592 9.642327 CAGAGATATCTCATCATAAAGAAGGTG 57.358 37.037 29.83 13.21 45.21 4.00
2477 4594 9.859427 GACAGAGATATCTCATCATAAAGAAGG 57.141 37.037 29.83 8.74 45.21 3.46
2481 4598 9.022884 TCCTGACAGAGATATCTCATCATAAAG 57.977 37.037 29.83 19.61 45.21 1.85
2486 4603 6.198237 TCTCCTGACAGAGATATCTCATCA 57.802 41.667 29.83 27.69 45.21 3.07
2527 4645 3.132925 TGTTACCGACAAGCTAACCAAC 58.867 45.455 0.00 0.00 34.69 3.77
2539 4657 6.056428 ACAAAGAGAAACAATGTTACCGAC 57.944 37.500 0.00 0.00 0.00 4.79
2540 4658 7.711772 TCTTACAAAGAGAAACAATGTTACCGA 59.288 33.333 0.00 0.00 32.71 4.69
2541 4659 7.857569 TCTTACAAAGAGAAACAATGTTACCG 58.142 34.615 0.00 0.00 32.71 4.02
2546 4664 9.178758 GGGATATCTTACAAAGAGAAACAATGT 57.821 33.333 2.05 0.00 41.61 2.71
2547 4665 9.177608 TGGGATATCTTACAAAGAGAAACAATG 57.822 33.333 2.05 0.00 41.61 2.82
2548 4666 9.927081 ATGGGATATCTTACAAAGAGAAACAAT 57.073 29.630 2.05 0.00 41.61 2.71
2549 4667 9.177608 CATGGGATATCTTACAAAGAGAAACAA 57.822 33.333 2.05 0.00 41.61 2.83
2602 4747 7.517614 TTGTGACAGAGTATTTATTTGGCAA 57.482 32.000 0.00 0.00 0.00 4.52
2614 4759 9.554395 TTGAGACAATTATTTTGTGACAGAGTA 57.446 29.630 0.00 0.00 31.96 2.59
2615 4760 8.345565 GTTGAGACAATTATTTTGTGACAGAGT 58.654 33.333 0.00 0.00 31.96 3.24
2616 4761 8.562892 AGTTGAGACAATTATTTTGTGACAGAG 58.437 33.333 0.00 0.00 31.96 3.35
2617 4762 8.450578 AGTTGAGACAATTATTTTGTGACAGA 57.549 30.769 0.00 0.00 31.96 3.41
2618 4763 9.173939 GAAGTTGAGACAATTATTTTGTGACAG 57.826 33.333 0.00 0.00 31.96 3.51
2619 4764 8.681806 TGAAGTTGAGACAATTATTTTGTGACA 58.318 29.630 0.00 0.00 31.96 3.58
2620 4765 9.173939 CTGAAGTTGAGACAATTATTTTGTGAC 57.826 33.333 0.00 0.00 31.96 3.67
2621 4766 8.902806 ACTGAAGTTGAGACAATTATTTTGTGA 58.097 29.630 0.00 0.00 31.96 3.58
2627 4772 9.561069 AGTTGTACTGAAGTTGAGACAATTATT 57.439 29.630 0.00 0.00 0.00 1.40
2628 4773 9.561069 AAGTTGTACTGAAGTTGAGACAATTAT 57.439 29.630 0.00 0.00 0.00 1.28
2629 4774 8.958119 AAGTTGTACTGAAGTTGAGACAATTA 57.042 30.769 0.00 0.00 0.00 1.40
2630 4775 7.865706 AAGTTGTACTGAAGTTGAGACAATT 57.134 32.000 0.00 0.00 0.00 2.32
2631 4776 7.865706 AAAGTTGTACTGAAGTTGAGACAAT 57.134 32.000 0.00 0.00 0.00 2.71
2632 4777 7.681939 AAAAGTTGTACTGAAGTTGAGACAA 57.318 32.000 0.00 0.35 0.00 3.18
2633 4778 8.038944 ACTAAAAGTTGTACTGAAGTTGAGACA 58.961 33.333 0.00 0.00 0.00 3.41
2634 4779 8.421673 ACTAAAAGTTGTACTGAAGTTGAGAC 57.578 34.615 0.00 0.00 0.00 3.36
2635 4780 9.525409 GTACTAAAAGTTGTACTGAAGTTGAGA 57.475 33.333 0.00 0.00 36.89 3.27
2636 4781 9.309516 TGTACTAAAAGTTGTACTGAAGTTGAG 57.690 33.333 0.00 0.00 39.57 3.02
2637 4782 9.656040 TTGTACTAAAAGTTGTACTGAAGTTGA 57.344 29.630 0.00 0.00 39.57 3.18
2640 4785 9.662947 ACTTTGTACTAAAAGTTGTACTGAAGT 57.337 29.630 5.69 13.86 45.84 3.01
2659 4804 8.277713 GCGTCTCAATTTTAGTACAACTTTGTA 58.722 33.333 0.00 0.00 42.35 2.41
2660 4805 7.012044 AGCGTCTCAATTTTAGTACAACTTTGT 59.988 33.333 0.00 0.00 44.86 2.83
2661 4806 7.352739 AGCGTCTCAATTTTAGTACAACTTTG 58.647 34.615 0.00 0.00 0.00 2.77
2662 4807 7.492352 AGCGTCTCAATTTTAGTACAACTTT 57.508 32.000 0.00 0.00 0.00 2.66
2663 4808 7.492352 AAGCGTCTCAATTTTAGTACAACTT 57.508 32.000 0.00 0.00 0.00 2.66
2664 4809 8.773404 ATAAGCGTCTCAATTTTAGTACAACT 57.227 30.769 0.00 0.00 0.00 3.16
2665 4810 9.821662 AAATAAGCGTCTCAATTTTAGTACAAC 57.178 29.630 0.00 0.00 0.00 3.32
2667 4812 9.820229 CAAAATAAGCGTCTCAATTTTAGTACA 57.180 29.630 0.00 0.00 31.97 2.90
2668 4813 9.274065 CCAAAATAAGCGTCTCAATTTTAGTAC 57.726 33.333 9.97 0.00 31.97 2.73
2669 4814 8.455682 CCCAAAATAAGCGTCTCAATTTTAGTA 58.544 33.333 9.97 0.00 31.97 1.82
2670 4815 7.175990 TCCCAAAATAAGCGTCTCAATTTTAGT 59.824 33.333 9.97 0.00 31.97 2.24
2671 4816 7.484959 GTCCCAAAATAAGCGTCTCAATTTTAG 59.515 37.037 9.97 6.09 31.97 1.85
2672 4817 7.309920 GTCCCAAAATAAGCGTCTCAATTTTA 58.690 34.615 9.97 0.00 31.97 1.52
2673 4818 6.156519 GTCCCAAAATAAGCGTCTCAATTTT 58.843 36.000 0.00 0.00 33.07 1.82
2674 4819 5.619086 CGTCCCAAAATAAGCGTCTCAATTT 60.619 40.000 0.00 0.00 0.00 1.82
2675 4820 4.142687 CGTCCCAAAATAAGCGTCTCAATT 60.143 41.667 0.00 0.00 0.00 2.32
2676 4821 3.374058 CGTCCCAAAATAAGCGTCTCAAT 59.626 43.478 0.00 0.00 0.00 2.57
2677 4822 2.739913 CGTCCCAAAATAAGCGTCTCAA 59.260 45.455 0.00 0.00 0.00 3.02
2678 4823 2.343101 CGTCCCAAAATAAGCGTCTCA 58.657 47.619 0.00 0.00 0.00 3.27
2679 4824 1.664151 CCGTCCCAAAATAAGCGTCTC 59.336 52.381 0.00 0.00 0.00 3.36
2680 4825 1.276989 TCCGTCCCAAAATAAGCGTCT 59.723 47.619 0.00 0.00 0.00 4.18
2681 4826 1.664151 CTCCGTCCCAAAATAAGCGTC 59.336 52.381 0.00 0.00 0.00 5.19
2682 4827 1.677820 CCTCCGTCCCAAAATAAGCGT 60.678 52.381 0.00 0.00 0.00 5.07
2683 4828 1.014352 CCTCCGTCCCAAAATAAGCG 58.986 55.000 0.00 0.00 0.00 4.68
2684 4829 1.064979 TCCCTCCGTCCCAAAATAAGC 60.065 52.381 0.00 0.00 0.00 3.09
2685 4830 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2686 4831 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2687 4832 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2688 4833 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2689 4834 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2690 4835 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2691 4836 2.969950 CAATATACTCCCTCCGTCCCAA 59.030 50.000 0.00 0.00 0.00 4.12
2692 4837 2.605257 CAATATACTCCCTCCGTCCCA 58.395 52.381 0.00 0.00 0.00 4.37
2693 4838 1.900486 CCAATATACTCCCTCCGTCCC 59.100 57.143 0.00 0.00 0.00 4.46
2694 4839 2.885616 TCCAATATACTCCCTCCGTCC 58.114 52.381 0.00 0.00 0.00 4.79
2695 4840 4.322801 CCATTCCAATATACTCCCTCCGTC 60.323 50.000 0.00 0.00 0.00 4.79
2696 4841 3.583086 CCATTCCAATATACTCCCTCCGT 59.417 47.826 0.00 0.00 0.00 4.69
2697 4842 3.583086 ACCATTCCAATATACTCCCTCCG 59.417 47.826 0.00 0.00 0.00 4.63
2698 4843 4.807643 GCACCATTCCAATATACTCCCTCC 60.808 50.000 0.00 0.00 0.00 4.30
2699 4844 4.042187 AGCACCATTCCAATATACTCCCTC 59.958 45.833 0.00 0.00 0.00 4.30
2700 4845 3.983410 AGCACCATTCCAATATACTCCCT 59.017 43.478 0.00 0.00 0.00 4.20
2701 4846 4.074970 CAGCACCATTCCAATATACTCCC 58.925 47.826 0.00 0.00 0.00 4.30
2702 4847 4.074970 CCAGCACCATTCCAATATACTCC 58.925 47.826 0.00 0.00 0.00 3.85
2703 4848 4.516698 CACCAGCACCATTCCAATATACTC 59.483 45.833 0.00 0.00 0.00 2.59
2704 4849 4.165950 TCACCAGCACCATTCCAATATACT 59.834 41.667 0.00 0.00 0.00 2.12
2705 4850 4.275936 GTCACCAGCACCATTCCAATATAC 59.724 45.833 0.00 0.00 0.00 1.47
2718 4863 2.295909 TGGCTTAAAATGTCACCAGCAC 59.704 45.455 0.00 0.00 0.00 4.40
2721 4866 5.647658 TGAGTATGGCTTAAAATGTCACCAG 59.352 40.000 0.00 0.00 0.00 4.00
2727 4872 8.807948 AATACAGTGAGTATGGCTTAAAATGT 57.192 30.769 0.00 0.00 42.56 2.71
2734 4879 5.804639 TGACAAATACAGTGAGTATGGCTT 58.195 37.500 0.00 0.00 42.56 4.35
2791 4941 7.285401 TCAGGTTTATGAGAAATAATGGAAGGC 59.715 37.037 0.00 0.00 0.00 4.35
2836 4989 0.179062 CGAATTCCTCCAGCTCCAGG 60.179 60.000 0.00 1.36 0.00 4.45
2837 4990 0.539051 ACGAATTCCTCCAGCTCCAG 59.461 55.000 0.00 0.00 0.00 3.86
2839 4992 1.757699 ACTACGAATTCCTCCAGCTCC 59.242 52.381 0.00 0.00 0.00 4.70
2854 5007 1.390463 GCAAGCTCTTTCGGAACTACG 59.610 52.381 0.00 0.00 0.00 3.51
2858 5011 3.355626 AAAAGCAAGCTCTTTCGGAAC 57.644 42.857 1.22 0.00 35.41 3.62
2902 5057 3.921021 ACAGAGAAGCAAATAGTCGTTCG 59.079 43.478 0.00 0.00 0.00 3.95
2907 5062 4.319177 ACACCACAGAGAAGCAAATAGTC 58.681 43.478 0.00 0.00 0.00 2.59
2948 5414 7.668052 AGCAAACAGTTAATGAGGTTACCATTA 59.332 33.333 3.51 0.00 35.94 1.90
2967 5433 3.135712 TCACCTTGTAAGAGGAGCAAACA 59.864 43.478 0.00 0.00 39.25 2.83
2975 5441 3.686726 GTCAAGCATCACCTTGTAAGAGG 59.313 47.826 2.31 0.00 42.16 3.69
2982 5448 2.605338 CCGTTTGTCAAGCATCACCTTG 60.605 50.000 0.14 0.00 42.73 3.61
2983 5449 1.608590 CCGTTTGTCAAGCATCACCTT 59.391 47.619 0.14 0.00 0.00 3.50
2987 5453 1.872952 CAGTCCGTTTGTCAAGCATCA 59.127 47.619 0.14 0.00 0.00 3.07
3001 5467 1.800805 ACAAGCAGATGAACAGTCCG 58.199 50.000 0.00 0.00 0.00 4.79
3003 5469 4.333926 GGGATAACAAGCAGATGAACAGTC 59.666 45.833 0.00 0.00 0.00 3.51
3005 5471 4.334759 CAGGGATAACAAGCAGATGAACAG 59.665 45.833 0.00 0.00 0.00 3.16
3072 5538 3.627395 AACCTGCAGAACCATATTCGA 57.373 42.857 17.39 0.00 0.00 3.71
3074 5540 4.199310 TGCTAACCTGCAGAACCATATTC 58.801 43.478 17.39 0.00 38.12 1.75
3121 5588 1.876837 CGGCACATGATGAGATCAGGG 60.877 57.143 0.00 0.00 44.74 4.45
3170 5637 2.221169 GCCATCACACTTCTCACACAA 58.779 47.619 0.00 0.00 0.00 3.33
3447 5914 2.785425 GGACCCGCCAAATCCATGC 61.785 63.158 0.00 0.00 36.34 4.06
3468 5935 2.461300 ACAGCATAGAGTGAGGCCTA 57.539 50.000 4.42 0.00 0.00 3.93
3469 5936 1.577736 AACAGCATAGAGTGAGGCCT 58.422 50.000 3.86 3.86 0.00 5.19
3477 5946 7.941919 TCTGGTATTAGTGTAACAGCATAGAG 58.058 38.462 0.00 0.00 38.88 2.43
3550 6019 7.004555 TCAGGGACGCATTCTTGTATATTAT 57.995 36.000 0.00 0.00 0.00 1.28
3552 6021 5.290493 TCAGGGACGCATTCTTGTATATT 57.710 39.130 0.00 0.00 0.00 1.28
3590 6059 7.927048 AGTTTTGAACCATACAACAGAACTAC 58.073 34.615 0.00 0.00 36.46 2.73
3645 6114 6.845758 AGTCAAACATTCATGGTCATTGAT 57.154 33.333 0.00 0.00 0.00 2.57
3647 6116 6.448852 TCAAGTCAAACATTCATGGTCATTG 58.551 36.000 0.00 0.00 0.00 2.82
3699 6168 6.342111 AGAGTAGCTGAGGCAATTAAGTAAC 58.658 40.000 0.00 0.00 41.70 2.50
3756 6226 2.267174 ATGATCACCTACCAGCATGC 57.733 50.000 10.51 10.51 31.97 4.06
3768 6238 7.558161 TCATAAACACATCAGGAATGATCAC 57.442 36.000 0.00 0.00 38.83 3.06
3776 6246 6.295249 TCACAACTTCATAAACACATCAGGA 58.705 36.000 0.00 0.00 0.00 3.86
3786 6256 9.534565 GCTGACTCTATATCACAACTTCATAAA 57.465 33.333 0.00 0.00 0.00 1.40
3792 6262 5.658634 TCCAGCTGACTCTATATCACAACTT 59.341 40.000 17.39 0.00 0.00 2.66
3793 6263 5.204292 TCCAGCTGACTCTATATCACAACT 58.796 41.667 17.39 0.00 0.00 3.16
3794 6264 5.521906 TCCAGCTGACTCTATATCACAAC 57.478 43.478 17.39 0.00 0.00 3.32
3795 6265 5.658634 ACTTCCAGCTGACTCTATATCACAA 59.341 40.000 17.39 0.00 0.00 3.33
3796 6266 5.204292 ACTTCCAGCTGACTCTATATCACA 58.796 41.667 17.39 0.00 0.00 3.58
3797 6267 5.782893 ACTTCCAGCTGACTCTATATCAC 57.217 43.478 17.39 0.00 0.00 3.06
3798 6268 6.007076 CCTACTTCCAGCTGACTCTATATCA 58.993 44.000 17.39 0.00 0.00 2.15
3799 6269 5.417580 CCCTACTTCCAGCTGACTCTATATC 59.582 48.000 17.39 0.00 0.00 1.63
3803 6273 2.581246 TCCCTACTTCCAGCTGACTCTA 59.419 50.000 17.39 0.00 0.00 2.43
3830 6300 1.143813 ATTATCCTCCAGCCCACCAG 58.856 55.000 0.00 0.00 0.00 4.00
3831 6301 2.054799 GTATTATCCTCCAGCCCACCA 58.945 52.381 0.00 0.00 0.00 4.17
3914 6396 2.076100 CAGCAAGAACGGCACTGATTA 58.924 47.619 0.00 0.00 0.00 1.75
3923 6405 1.449601 ATACGCCCAGCAAGAACGG 60.450 57.895 0.00 0.00 0.00 4.44
3971 7152 6.990908 AGGTTATCCCCTATACAAGTACAC 57.009 41.667 0.00 0.00 31.31 2.90
3991 7172 3.952323 TGAAGCTACATAGTCGCTTAGGT 59.048 43.478 8.60 0.00 42.97 3.08
3992 7173 4.036971 ACTGAAGCTACATAGTCGCTTAGG 59.963 45.833 8.60 7.41 42.97 2.69
3993 7174 5.176407 ACTGAAGCTACATAGTCGCTTAG 57.824 43.478 8.60 8.99 42.97 2.18
3994 7175 6.879276 ATACTGAAGCTACATAGTCGCTTA 57.121 37.500 8.60 0.00 42.97 3.09
3996 7177 5.776173 AATACTGAAGCTACATAGTCGCT 57.224 39.130 0.00 0.00 36.13 4.93
3997 7178 6.255887 ACAAAATACTGAAGCTACATAGTCGC 59.744 38.462 0.00 0.00 0.00 5.19
3998 7179 7.757097 ACAAAATACTGAAGCTACATAGTCG 57.243 36.000 0.00 0.00 0.00 4.18
3999 7180 9.372369 AGAACAAAATACTGAAGCTACATAGTC 57.628 33.333 0.00 0.00 0.00 2.59
4121 7756 6.532657 CACAGAATTCTCAATTTGTTATGCCC 59.467 38.462 4.57 0.00 0.00 5.36
4135 7772 5.006386 AGGTGATCAAACCACAGAATTCTC 58.994 41.667 4.57 0.00 43.20 2.87
4137 7774 4.520492 ACAGGTGATCAAACCACAGAATTC 59.480 41.667 0.00 0.00 43.20 2.17
4203 7844 6.967097 TGCAGGGGCCTTTTGTTTTCAAAG 62.967 45.833 0.84 0.00 43.96 2.77
4206 7847 0.467804 GCAGGGGCCTTTTGTTTTCA 59.532 50.000 0.84 0.00 0.00 2.69
4207 7850 0.467804 TGCAGGGGCCTTTTGTTTTC 59.532 50.000 0.84 0.00 40.13 2.29
4250 8518 5.063944 CCCAATCACGTAATCTTGAGAACTG 59.936 44.000 0.00 0.00 0.00 3.16
4253 8521 4.935205 CACCCAATCACGTAATCTTGAGAA 59.065 41.667 0.00 0.00 0.00 2.87
4264 8532 1.036707 CCAAAACCACCCAATCACGT 58.963 50.000 0.00 0.00 0.00 4.49
4265 8533 1.036707 ACCAAAACCACCCAATCACG 58.963 50.000 0.00 0.00 0.00 4.35
4269 8547 0.758123 CAGCACCAAAACCACCCAAT 59.242 50.000 0.00 0.00 0.00 3.16
4270 8555 0.324738 TCAGCACCAAAACCACCCAA 60.325 50.000 0.00 0.00 0.00 4.12
4301 8591 2.487762 CCAACAATGCGACAGGTATGTT 59.512 45.455 0.00 0.00 40.68 2.71
4336 8626 8.984764 TGCACGAAACCAATATACTATGATTAC 58.015 33.333 0.00 0.00 0.00 1.89
4379 8669 1.219664 GGTGCTGGCATACACCGTA 59.780 57.895 20.10 0.00 46.32 4.02
4477 8767 1.540797 CGGTCGGTGGTTCCTTGTTTA 60.541 52.381 0.00 0.00 0.00 2.01
4479 8769 1.227734 CGGTCGGTGGTTCCTTGTT 60.228 57.895 0.00 0.00 0.00 2.83
4480 8770 2.424302 CGGTCGGTGGTTCCTTGT 59.576 61.111 0.00 0.00 0.00 3.16
4529 8826 0.936764 CGATCGGATTGGCTGACGAG 60.937 60.000 7.38 0.00 38.85 4.18
4539 8836 3.543680 AACATCAAGGACGATCGGATT 57.456 42.857 20.98 7.96 0.00 3.01
4540 8837 3.889538 TCTAACATCAAGGACGATCGGAT 59.110 43.478 20.98 8.98 0.00 4.18
4549 8846 9.618890 CCTCAGATTTTATTCTAACATCAAGGA 57.381 33.333 7.82 0.00 0.00 3.36
4555 8852 9.289782 GGTATGCCTCAGATTTTATTCTAACAT 57.710 33.333 0.00 0.00 0.00 2.71
4571 11304 1.344438 GATGATCCACGGTATGCCTCA 59.656 52.381 0.00 0.00 0.00 3.86
4584 11317 0.250081 GCTTGGTCCTCGGATGATCC 60.250 60.000 0.08 0.08 0.00 3.36
4592 11325 2.868583 CTCATGTATTGCTTGGTCCTCG 59.131 50.000 0.00 0.00 0.00 4.63
4593 11326 2.615912 GCTCATGTATTGCTTGGTCCTC 59.384 50.000 0.00 0.00 0.00 3.71
4607 11340 1.080501 CTCGGTGTCGTGCTCATGT 60.081 57.895 0.00 0.00 37.69 3.21
4608 11341 0.179127 ATCTCGGTGTCGTGCTCATG 60.179 55.000 0.00 0.00 37.69 3.07
4609 11342 0.532573 AATCTCGGTGTCGTGCTCAT 59.467 50.000 0.00 0.00 37.69 2.90
4610 11343 0.317160 AAATCTCGGTGTCGTGCTCA 59.683 50.000 0.00 0.00 37.69 4.26
4644 11378 1.182667 CGGGGATGTAGCCATATCGA 58.817 55.000 0.00 0.00 0.00 3.59
4668 11402 2.599677 GGGAGGAGTACCCATAGTCAG 58.400 57.143 0.00 0.00 46.05 3.51
4679 11414 1.327690 GCGGTGTCATGGGAGGAGTA 61.328 60.000 0.00 0.00 0.00 2.59
4680 11415 2.660064 GCGGTGTCATGGGAGGAGT 61.660 63.158 0.00 0.00 0.00 3.85
4773 11510 6.261826 GGTAGACACACGATGTAACCTATACT 59.738 42.308 15.25 0.00 43.56 2.12
4775 11512 5.532406 GGGTAGACACACGATGTAACCTATA 59.468 44.000 18.81 0.00 43.56 1.31


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.