Multiple sequence alignment - TraesCS7D01G376000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G376000 chr7D 100.000 3905 0 0 1 3905 486116102 486112198 0.000000e+00 7212.0
1 TraesCS7D01G376000 chr7D 82.394 284 38 5 637 908 36481066 36480783 1.810000e-58 237.0
2 TraesCS7D01G376000 chr7A 93.397 2832 125 18 950 3766 554498536 554495752 0.000000e+00 4137.0
3 TraesCS7D01G376000 chr7A 81.667 240 38 4 675 910 735148687 735148924 1.110000e-45 195.0
4 TraesCS7D01G376000 chr7B 93.157 2718 152 14 953 3655 513817819 513815121 0.000000e+00 3958.0
5 TraesCS7D01G376000 chr7B 89.785 372 35 3 153 524 513818781 513818413 1.270000e-129 473.0
6 TraesCS7D01G376000 chr7B 88.811 286 24 5 677 961 513818277 513817999 1.040000e-90 344.0
7 TraesCS7D01G376000 chr7B 77.660 282 50 9 633 904 623759014 623758736 4.040000e-35 159.0
8 TraesCS7D01G376000 chr3B 84.477 277 32 4 631 906 700376355 700376621 2.990000e-66 263.0
9 TraesCS7D01G376000 chr3B 87.417 151 15 3 1 150 726748879 726748732 1.870000e-38 171.0
10 TraesCS7D01G376000 chr3D 81.034 290 30 9 631 906 529786930 529787208 1.420000e-49 207.0
11 TraesCS7D01G376000 chr3D 78.189 243 32 9 673 905 309946304 309946535 6.810000e-28 135.0
12 TraesCS7D01G376000 chr3A 88.024 167 11 6 1 160 121406178 121406342 5.150000e-44 189.0
13 TraesCS7D01G376000 chr5A 86.538 156 17 3 1 152 415160210 415160365 6.710000e-38 169.0
14 TraesCS7D01G376000 chr5A 84.810 158 15 7 1 152 12021409 12021563 2.430000e-32 150.0
15 TraesCS7D01G376000 chr4D 89.051 137 10 4 1 133 366222840 366222975 8.680000e-37 165.0
16 TraesCS7D01G376000 chr2D 85.714 161 18 2 1 156 560397718 560397558 8.680000e-37 165.0
17 TraesCS7D01G376000 chr2D 78.543 247 31 10 678 908 12738879 12739119 4.070000e-30 143.0
18 TraesCS7D01G376000 chr1B 85.714 161 18 5 1 156 572882688 572882528 8.680000e-37 165.0
19 TraesCS7D01G376000 chr2A 85.093 161 18 5 1 156 700093550 700093709 4.040000e-35 159.0
20 TraesCS7D01G376000 chr6D 85.065 154 18 3 5 153 380589062 380588909 6.760000e-33 152.0
21 TraesCS7D01G376000 chr6A 78.774 212 37 7 701 909 49757558 49757352 6.810000e-28 135.0
22 TraesCS7D01G376000 chr1A 75.849 265 34 14 633 896 553957611 553957376 1.480000e-19 108.0
23 TraesCS7D01G376000 chr5D 78.125 128 13 8 733 845 498861246 498861119 2.520000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G376000 chr7D 486112198 486116102 3904 True 7212.000000 7212 100.000000 1 3905 1 chr7D.!!$R2 3904
1 TraesCS7D01G376000 chr7A 554495752 554498536 2784 True 4137.000000 4137 93.397000 950 3766 1 chr7A.!!$R1 2816
2 TraesCS7D01G376000 chr7B 513815121 513818781 3660 True 1591.666667 3958 90.584333 153 3655 3 chr7B.!!$R2 3502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 581 0.036306 CCAACCTTGCTCTTACCCGT 59.964 55.0 0.00 0.0 0.00 5.28 F
633 634 0.106769 ACATCTGGTTGCACCACACA 60.107 50.0 4.16 0.0 44.79 3.72 F
916 917 0.618458 TGAGAACCTTGCCCGCTTAT 59.382 50.0 0.00 0.0 0.00 1.73 F
2625 2815 0.034767 TGCTTGAGCTGGAGGGAATG 60.035 55.0 4.44 0.0 42.66 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1664 0.041386 AAGAACCGCCTAGAGTCCCT 59.959 55.0 0.00 0.0 0.00 4.20 R
2024 2214 0.250513 GAGGACACCAGCCAAGGTAG 59.749 60.0 0.00 0.0 40.77 3.18 R
2822 3012 0.111061 TGCCAACTGATCAACTGCCT 59.889 50.0 0.00 0.0 0.00 4.75 R
3806 4013 0.037303 CTGCAGTGACTTGGGACCAT 59.963 55.0 5.25 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.611284 GATTTGATCAAATTTAAAAGGTTTGCC 57.389 29.630 29.44 11.67 40.77 4.52
52 53 9.353431 ATTTGATCAAATTTAAAAGGTTTGCCT 57.647 25.926 24.83 1.00 41.52 4.75
69 70 9.138596 AGGTTTGCCTTTTCTAAAAGTAATACA 57.861 29.630 12.80 2.67 44.18 2.29
70 71 9.188588 GGTTTGCCTTTTCTAAAAGTAATACAC 57.811 33.333 12.80 5.09 42.92 2.90
71 72 9.188588 GTTTGCCTTTTCTAAAAGTAATACACC 57.811 33.333 12.80 0.00 42.92 4.16
72 73 8.700439 TTGCCTTTTCTAAAAGTAATACACCT 57.300 30.769 12.80 0.00 42.92 4.00
73 74 8.700439 TGCCTTTTCTAAAAGTAATACACCTT 57.300 30.769 12.80 0.00 42.92 3.50
74 75 9.796180 TGCCTTTTCTAAAAGTAATACACCTTA 57.204 29.630 12.80 0.00 42.92 2.69
120 121 7.422878 TTTTAAGAAACCCAACAACAACAAC 57.577 32.000 0.00 0.00 0.00 3.32
121 122 3.224884 AGAAACCCAACAACAACAACG 57.775 42.857 0.00 0.00 0.00 4.10
122 123 2.559231 AGAAACCCAACAACAACAACGT 59.441 40.909 0.00 0.00 0.00 3.99
123 124 2.640346 AACCCAACAACAACAACGTC 57.360 45.000 0.00 0.00 0.00 4.34
124 125 0.448593 ACCCAACAACAACAACGTCG 59.551 50.000 0.00 0.00 0.00 5.12
125 126 0.863957 CCCAACAACAACAACGTCGC 60.864 55.000 0.00 0.00 0.00 5.19
126 127 0.179187 CCAACAACAACAACGTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
127 128 1.179332 CAACAACAACAACGTCGCAG 58.821 50.000 0.00 0.00 0.00 5.18
128 129 0.522495 AACAACAACAACGTCGCAGC 60.522 50.000 0.00 0.00 0.00 5.25
129 130 1.061729 CAACAACAACGTCGCAGCA 59.938 52.632 0.00 0.00 0.00 4.41
130 131 0.522286 CAACAACAACGTCGCAGCAA 60.522 50.000 0.00 0.00 0.00 3.91
131 132 0.169230 AACAACAACGTCGCAGCAAA 59.831 45.000 0.00 0.00 0.00 3.68
132 133 0.248054 ACAACAACGTCGCAGCAAAG 60.248 50.000 0.00 0.00 0.00 2.77
133 134 0.248054 CAACAACGTCGCAGCAAAGT 60.248 50.000 0.00 0.00 0.00 2.66
134 135 0.248054 AACAACGTCGCAGCAAAGTG 60.248 50.000 0.00 0.00 0.00 3.16
135 136 2.005537 CAACGTCGCAGCAAAGTGC 61.006 57.895 0.00 0.00 45.46 4.40
144 145 2.421314 GCAAAGTGCACCCAACCC 59.579 61.111 14.63 0.00 44.26 4.11
145 146 2.133641 GCAAAGTGCACCCAACCCT 61.134 57.895 14.63 0.00 44.26 4.34
146 147 1.685355 GCAAAGTGCACCCAACCCTT 61.685 55.000 14.63 0.00 44.26 3.95
147 148 0.389025 CAAAGTGCACCCAACCCTTC 59.611 55.000 14.63 0.00 0.00 3.46
148 149 0.261696 AAAGTGCACCCAACCCTTCT 59.738 50.000 14.63 0.00 0.00 2.85
149 150 1.145571 AAGTGCACCCAACCCTTCTA 58.854 50.000 14.63 0.00 0.00 2.10
150 151 0.693049 AGTGCACCCAACCCTTCTAG 59.307 55.000 14.63 0.00 0.00 2.43
151 152 0.400594 GTGCACCCAACCCTTCTAGT 59.599 55.000 5.22 0.00 0.00 2.57
221 222 5.301551 AGTCATGCAACCTTGTCACATAAAA 59.698 36.000 0.00 0.00 0.00 1.52
225 226 6.214191 TGCAACCTTGTCACATAAAAGAAA 57.786 33.333 0.00 0.00 0.00 2.52
230 231 8.356657 CAACCTTGTCACATAAAAGAAATACCA 58.643 33.333 0.00 0.00 0.00 3.25
321 322 5.693769 ACATGTTAGCTACAACCCACTAT 57.306 39.130 0.00 0.00 40.89 2.12
325 326 7.125204 ACATGTTAGCTACAACCCACTATCTAA 59.875 37.037 0.00 0.00 40.89 2.10
326 327 7.108841 TGTTAGCTACAACCCACTATCTAAG 57.891 40.000 0.00 0.00 32.64 2.18
338 339 5.753921 CCCACTATCTAAGTTTCTTTAGCCG 59.246 44.000 0.00 0.00 35.76 5.52
343 344 4.382291 TCTAAGTTTCTTTAGCCGTGCAA 58.618 39.130 0.00 0.00 32.01 4.08
372 373 5.449862 GCCACGTAAGCAAATCATCCATTTA 60.450 40.000 4.95 0.00 45.62 1.40
399 400 9.749340 AGTTATAAGTTACCTTTTTGCCATAGT 57.251 29.630 0.00 0.00 31.89 2.12
436 437 3.967401 TGCCACATCATAAATTCATGCG 58.033 40.909 0.00 0.00 0.00 4.73
438 439 3.732219 GCCACATCATAAATTCATGCGTG 59.268 43.478 0.00 0.00 32.87 5.34
525 526 3.059166 CCAACTAGGCAATTTTGTGTGC 58.941 45.455 0.00 0.00 40.14 4.57
526 527 3.492309 CCAACTAGGCAATTTTGTGTGCA 60.492 43.478 0.00 0.00 42.74 4.57
527 528 3.369546 ACTAGGCAATTTTGTGTGCAC 57.630 42.857 10.75 10.75 42.74 4.57
529 530 0.743688 AGGCAATTTTGTGTGCACGA 59.256 45.000 13.13 0.00 42.74 4.35
531 532 2.556189 AGGCAATTTTGTGTGCACGATA 59.444 40.909 13.13 0.00 42.74 2.92
532 533 3.193267 AGGCAATTTTGTGTGCACGATAT 59.807 39.130 13.13 0.00 42.74 1.63
533 534 3.925913 GGCAATTTTGTGTGCACGATATT 59.074 39.130 13.13 5.14 42.74 1.28
534 535 5.098893 GGCAATTTTGTGTGCACGATATTA 58.901 37.500 13.13 0.00 42.74 0.98
535 536 5.574830 GGCAATTTTGTGTGCACGATATTAA 59.425 36.000 13.13 2.02 42.74 1.40
536 537 6.255453 GGCAATTTTGTGTGCACGATATTAAT 59.745 34.615 13.13 4.33 42.74 1.40
537 538 7.433719 GGCAATTTTGTGTGCACGATATTAATA 59.566 33.333 13.13 0.00 42.74 0.98
545 546 8.921670 TGTGTGCACGATATTAATATATGACAC 58.078 33.333 23.93 23.93 31.49 3.67
546 547 9.140286 GTGTGCACGATATTAATATATGACACT 57.860 33.333 24.45 5.25 30.33 3.55
548 549 8.808529 GTGCACGATATTAATATATGACACTCC 58.191 37.037 21.43 9.65 0.00 3.85
549 550 7.979537 TGCACGATATTAATATATGACACTCCC 59.020 37.037 17.57 4.68 0.00 4.30
550 551 7.979537 GCACGATATTAATATATGACACTCCCA 59.020 37.037 17.57 0.00 0.00 4.37
551 552 9.302345 CACGATATTAATATATGACACTCCCAC 57.698 37.037 7.97 0.00 0.00 4.61
552 553 9.256228 ACGATATTAATATATGACACTCCCACT 57.744 33.333 7.97 0.00 0.00 4.00
556 557 8.645814 ATTAATATATGACACTCCCACTACGA 57.354 34.615 0.00 0.00 0.00 3.43
557 558 6.576662 AATATATGACACTCCCACTACGAG 57.423 41.667 0.00 0.00 0.00 4.18
558 559 2.217510 ATGACACTCCCACTACGAGT 57.782 50.000 0.00 0.00 41.29 4.18
559 560 2.865119 TGACACTCCCACTACGAGTA 57.135 50.000 0.00 0.00 38.54 2.59
560 561 2.708051 TGACACTCCCACTACGAGTAG 58.292 52.381 8.58 8.58 38.54 2.57
561 562 1.401199 GACACTCCCACTACGAGTAGC 59.599 57.143 9.94 0.00 38.54 3.58
563 564 0.330604 ACTCCCACTACGAGTAGCCA 59.669 55.000 9.94 0.00 38.82 4.75
564 565 1.272313 ACTCCCACTACGAGTAGCCAA 60.272 52.381 9.94 0.00 38.82 4.52
565 566 1.134560 CTCCCACTACGAGTAGCCAAC 59.865 57.143 9.94 0.00 36.66 3.77
566 567 0.175073 CCCACTACGAGTAGCCAACC 59.825 60.000 9.94 0.00 36.66 3.77
567 568 1.183549 CCACTACGAGTAGCCAACCT 58.816 55.000 9.94 0.00 36.66 3.50
568 569 1.549170 CCACTACGAGTAGCCAACCTT 59.451 52.381 9.94 0.00 36.66 3.50
570 571 1.067071 ACTACGAGTAGCCAACCTTGC 60.067 52.381 9.94 0.00 36.66 4.01
571 572 1.204941 CTACGAGTAGCCAACCTTGCT 59.795 52.381 0.00 0.00 42.81 3.91
572 573 0.037232 ACGAGTAGCCAACCTTGCTC 60.037 55.000 0.00 0.00 40.23 4.26
574 575 1.338200 CGAGTAGCCAACCTTGCTCTT 60.338 52.381 0.00 0.00 40.23 2.85
576 577 3.263261 GAGTAGCCAACCTTGCTCTTAC 58.737 50.000 0.00 0.00 40.23 2.34
577 578 2.027100 AGTAGCCAACCTTGCTCTTACC 60.027 50.000 0.00 0.00 40.23 2.85
578 579 0.038310 AGCCAACCTTGCTCTTACCC 59.962 55.000 0.00 0.00 32.41 3.69
579 580 1.305930 GCCAACCTTGCTCTTACCCG 61.306 60.000 0.00 0.00 0.00 5.28
580 581 0.036306 CCAACCTTGCTCTTACCCGT 59.964 55.000 0.00 0.00 0.00 5.28
581 582 1.276989 CCAACCTTGCTCTTACCCGTA 59.723 52.381 0.00 0.00 0.00 4.02
583 584 1.934410 ACCTTGCTCTTACCCGTAGT 58.066 50.000 0.00 0.00 0.00 2.73
584 585 1.549170 ACCTTGCTCTTACCCGTAGTG 59.451 52.381 0.00 0.00 0.00 2.74
597 598 3.992260 CCGTAGTGGGAGTATCTCTTG 57.008 52.381 0.00 0.00 35.73 3.02
599 600 3.315749 CCGTAGTGGGAGTATCTCTTGTC 59.684 52.174 0.00 0.00 35.73 3.18
600 601 3.945921 CGTAGTGGGAGTATCTCTTGTCA 59.054 47.826 0.00 0.00 35.73 3.58
601 602 4.201930 CGTAGTGGGAGTATCTCTTGTCAC 60.202 50.000 0.00 0.00 35.73 3.67
602 603 3.100671 AGTGGGAGTATCTCTTGTCACC 58.899 50.000 0.00 0.00 35.73 4.02
604 605 4.017407 AGTGGGAGTATCTCTTGTCACCTA 60.017 45.833 0.00 0.00 35.73 3.08
605 606 4.710375 GTGGGAGTATCTCTTGTCACCTAA 59.290 45.833 0.00 0.00 35.73 2.69
607 608 5.187186 TGGGAGTATCTCTTGTCACCTAAAC 59.813 44.000 0.00 0.00 35.73 2.01
608 609 5.395435 GGGAGTATCTCTTGTCACCTAAACC 60.395 48.000 0.00 0.00 33.73 3.27
611 612 6.937392 AGTATCTCTTGTCACCTAAACCTTC 58.063 40.000 0.00 0.00 0.00 3.46
612 613 4.618920 TCTCTTGTCACCTAAACCTTCC 57.381 45.455 0.00 0.00 0.00 3.46
613 614 3.971305 TCTCTTGTCACCTAAACCTTCCA 59.029 43.478 0.00 0.00 0.00 3.53
616 617 3.935818 TGTCACCTAAACCTTCCAACA 57.064 42.857 0.00 0.00 0.00 3.33
618 619 4.394729 TGTCACCTAAACCTTCCAACATC 58.605 43.478 0.00 0.00 0.00 3.06
622 623 3.397955 ACCTAAACCTTCCAACATCTGGT 59.602 43.478 0.00 0.00 46.51 4.00
623 624 4.141018 ACCTAAACCTTCCAACATCTGGTT 60.141 41.667 0.00 0.00 46.51 3.67
631 632 3.511362 AACATCTGGTTGCACCACA 57.489 47.368 4.16 0.00 44.79 4.17
632 633 1.032014 AACATCTGGTTGCACCACAC 58.968 50.000 4.16 0.00 44.79 3.82
633 634 0.106769 ACATCTGGTTGCACCACACA 60.107 50.000 4.16 0.00 44.79 3.72
634 635 1.250328 CATCTGGTTGCACCACACAT 58.750 50.000 4.16 0.00 44.79 3.21
637 638 0.746063 CTGGTTGCACCACACATTGT 59.254 50.000 4.16 0.00 44.79 2.71
638 639 1.136695 CTGGTTGCACCACACATTGTT 59.863 47.619 4.16 0.00 44.79 2.83
640 641 2.027745 TGGTTGCACCACACATTGTTTT 60.028 40.909 4.16 0.00 44.79 2.43
641 642 2.607180 GGTTGCACCACACATTGTTTTC 59.393 45.455 0.00 0.00 38.42 2.29
643 644 2.886081 TGCACCACACATTGTTTTCAC 58.114 42.857 0.00 0.00 0.00 3.18
644 645 2.495270 TGCACCACACATTGTTTTCACT 59.505 40.909 0.00 0.00 0.00 3.41
646 647 3.181487 GCACCACACATTGTTTTCACTCT 60.181 43.478 0.00 0.00 0.00 3.24
648 649 4.096231 CACCACACATTGTTTTCACTCTCA 59.904 41.667 0.00 0.00 0.00 3.27
649 650 4.336433 ACCACACATTGTTTTCACTCTCAG 59.664 41.667 0.00 0.00 0.00 3.35
650 651 4.336433 CCACACATTGTTTTCACTCTCAGT 59.664 41.667 0.00 0.00 0.00 3.41
664 665 5.651387 ACTCTCAGTGAGATTTCGATGAA 57.349 39.130 22.90 0.00 45.39 2.57
665 666 6.030548 ACTCTCAGTGAGATTTCGATGAAA 57.969 37.500 22.90 0.00 45.39 2.69
666 667 6.638610 ACTCTCAGTGAGATTTCGATGAAAT 58.361 36.000 22.90 4.54 45.39 2.17
667 668 7.102346 ACTCTCAGTGAGATTTCGATGAAATT 58.898 34.615 22.90 0.00 45.39 1.82
668 669 7.605691 ACTCTCAGTGAGATTTCGATGAAATTT 59.394 33.333 22.90 1.10 45.39 1.82
669 670 9.091784 CTCTCAGTGAGATTTCGATGAAATTTA 57.908 33.333 22.90 0.00 45.39 1.40
670 671 9.605275 TCTCAGTGAGATTTCGATGAAATTTAT 57.395 29.630 19.10 0.00 41.56 1.40
672 673 9.992910 TCAGTGAGATTTCGATGAAATTTATTG 57.007 29.630 6.26 4.32 41.56 1.90
673 674 9.992910 CAGTGAGATTTCGATGAAATTTATTGA 57.007 29.630 6.26 0.00 41.56 2.57
712 713 9.023962 TCAGCAATCACTGAAATATTTACCTTT 57.976 29.630 0.00 0.00 43.59 3.11
713 714 9.294030 CAGCAATCACTGAAATATTTACCTTTC 57.706 33.333 0.00 0.00 40.25 2.62
835 836 1.135803 GCCGAAACGCAAGCTGAAATA 60.136 47.619 0.00 0.00 45.62 1.40
842 843 6.129221 CGAAACGCAAGCTGAAATAATTGAAA 60.129 34.615 0.00 0.00 45.62 2.69
872 873 5.712446 TGAATTTCGATGATTTTGGGTGGTA 59.288 36.000 0.00 0.00 0.00 3.25
875 876 3.605634 TCGATGATTTTGGGTGGTACTG 58.394 45.455 0.00 0.00 0.00 2.74
900 901 7.975616 TGAAATTTTTCTGAAACTGGAAGTGAG 59.024 33.333 1.58 0.00 41.72 3.51
901 902 8.190784 GAAATTTTTCTGAAACTGGAAGTGAGA 58.809 33.333 1.58 0.00 39.84 3.27
911 912 0.955919 GGAAGTGAGAACCTTGCCCG 60.956 60.000 0.00 0.00 0.00 6.13
913 914 2.032681 GTGAGAACCTTGCCCGCT 59.967 61.111 0.00 0.00 0.00 5.52
914 915 1.600916 GTGAGAACCTTGCCCGCTT 60.601 57.895 0.00 0.00 0.00 4.68
916 917 0.618458 TGAGAACCTTGCCCGCTTAT 59.382 50.000 0.00 0.00 0.00 1.73
917 918 1.834896 TGAGAACCTTGCCCGCTTATA 59.165 47.619 0.00 0.00 0.00 0.98
918 919 2.438021 TGAGAACCTTGCCCGCTTATAT 59.562 45.455 0.00 0.00 0.00 0.86
919 920 3.644265 TGAGAACCTTGCCCGCTTATATA 59.356 43.478 0.00 0.00 0.00 0.86
920 921 3.995048 GAGAACCTTGCCCGCTTATATAC 59.005 47.826 0.00 0.00 0.00 1.47
923 924 2.224450 ACCTTGCCCGCTTATATACCAC 60.224 50.000 0.00 0.00 0.00 4.16
924 925 2.038557 CCTTGCCCGCTTATATACCACT 59.961 50.000 0.00 0.00 0.00 4.00
925 926 3.326747 CTTGCCCGCTTATATACCACTC 58.673 50.000 0.00 0.00 0.00 3.51
930 931 4.024302 GCCCGCTTATATACCACTCAAAAC 60.024 45.833 0.00 0.00 0.00 2.43
941 942 2.935849 CCACTCAAAACAAAAGTTGCCC 59.064 45.455 0.00 0.00 0.00 5.36
944 945 2.935849 CTCAAAACAAAAGTTGCCCCAC 59.064 45.455 0.00 0.00 0.00 4.61
962 963 2.167693 CCACGTGGCCATTTCTAGAGTA 59.832 50.000 24.02 0.00 0.00 2.59
1228 1418 1.287041 GGACAGGTTCGCGTACAACC 61.287 60.000 17.85 17.85 43.38 3.77
1326 1516 2.372690 CCTGCCGAACGAGTTCACG 61.373 63.158 15.20 6.30 39.46 4.35
1434 1624 4.308458 CGGCAGGTGTTCGTGGGA 62.308 66.667 0.00 0.00 0.00 4.37
1463 1653 4.420143 GCACTCATATGCGTCGGT 57.580 55.556 0.00 0.00 35.50 4.69
1550 1740 2.398498 GAACACGATGATCGGAGGATG 58.602 52.381 19.82 10.08 45.59 3.51
1659 1849 1.784062 CCTGCTTCTCGTTTGCTCG 59.216 57.895 0.00 0.00 0.00 5.03
1716 1906 3.558931 TGTCATATGTTGGCTAGTGGG 57.441 47.619 1.90 0.00 0.00 4.61
1790 1980 1.348008 GGGGATCTGTGGATGGCTCA 61.348 60.000 0.00 0.00 31.46 4.26
1981 2171 3.068560 CGATTCCGTGAAACTTTGGGTA 58.931 45.455 0.00 0.00 31.75 3.69
2024 2214 0.463620 GGTCTCACTCCAGATGAGGC 59.536 60.000 2.37 0.19 46.12 4.70
2064 2254 1.203162 TCTGCCCATGGACAAAATGGT 60.203 47.619 15.22 0.00 42.68 3.55
2139 2329 5.185249 TGATCCTGGTGTCACTCTACTTAAC 59.815 44.000 2.35 0.00 0.00 2.01
2236 2426 5.886960 AAACACTATCTCTTGGAATGTGC 57.113 39.130 0.00 0.00 35.88 4.57
2299 2489 5.658468 CAGTCATGTTCTTCAGAGCTATGA 58.342 41.667 7.02 7.02 0.00 2.15
2442 2632 2.464157 AGCCTGAAGTTGAGCACTAC 57.536 50.000 0.00 0.00 32.94 2.73
2499 2689 4.233123 TCTTGCAAAAGCTGTTGATCTG 57.767 40.909 21.21 6.88 0.00 2.90
2526 2716 4.383931 AGATATGCCAATGAAGCCTGAT 57.616 40.909 0.00 0.00 0.00 2.90
2625 2815 0.034767 TGCTTGAGCTGGAGGGAATG 60.035 55.000 4.44 0.00 42.66 2.67
2690 2880 0.251354 CACCAGTGGGAGGACATGAG 59.749 60.000 15.21 0.00 38.05 2.90
2822 3012 6.451064 TGAAAGCTCAAGTGAGATATACGA 57.549 37.500 12.54 0.00 44.74 3.43
2911 3101 7.628234 ACTCATCATGGAAGAGTGAAATAAGT 58.372 34.615 12.65 0.00 38.83 2.24
2928 3118 8.325787 TGAAATAAGTTATTTAGGAGTGCTCCA 58.674 33.333 18.59 7.60 43.74 3.86
2998 3188 5.939764 TTCATATCAAGTAGCCTGTCTGT 57.060 39.130 0.00 0.00 0.00 3.41
3036 3226 3.691609 GGTGTAAAGAAGCATCCCTGAAG 59.308 47.826 0.00 0.00 0.00 3.02
3049 3239 5.755861 GCATCCCTGAAGTAGTGAAAGTATC 59.244 44.000 0.00 0.00 0.00 2.24
3133 3325 6.147821 CACATTTGAATACTGGAAACTCGAGT 59.852 38.462 13.58 13.58 38.91 4.18
3200 3392 2.507058 TCAGGCTTTCTGCAGATACCAT 59.493 45.455 19.04 3.25 45.15 3.55
3216 3408 0.615544 CCATGGTTCACTGGGGCAAT 60.616 55.000 2.57 0.00 0.00 3.56
3222 3414 1.541588 GTTCACTGGGGCAATCAACTC 59.458 52.381 0.00 0.00 0.00 3.01
3223 3415 0.770499 TCACTGGGGCAATCAACTCA 59.230 50.000 0.00 0.00 0.00 3.41
3224 3416 1.144708 TCACTGGGGCAATCAACTCAA 59.855 47.619 0.00 0.00 0.00 3.02
3225 3417 2.173519 CACTGGGGCAATCAACTCAAT 58.826 47.619 0.00 0.00 0.00 2.57
3226 3418 2.165030 CACTGGGGCAATCAACTCAATC 59.835 50.000 0.00 0.00 0.00 2.67
3227 3419 2.225091 ACTGGGGCAATCAACTCAATCA 60.225 45.455 0.00 0.00 0.00 2.57
3228 3420 2.827322 CTGGGGCAATCAACTCAATCAA 59.173 45.455 0.00 0.00 0.00 2.57
3229 3421 2.562298 TGGGGCAATCAACTCAATCAAC 59.438 45.455 0.00 0.00 0.00 3.18
3230 3422 2.827921 GGGGCAATCAACTCAATCAACT 59.172 45.455 0.00 0.00 0.00 3.16
3244 3436 2.410785 TCAACTCAACCGACTGTACG 57.589 50.000 0.00 0.00 0.00 3.67
3293 3485 2.369860 ACAACACTCAGGATTCTCTGCA 59.630 45.455 0.00 0.00 34.91 4.41
3295 3487 3.540314 ACACTCAGGATTCTCTGCATC 57.460 47.619 0.00 0.00 34.91 3.91
3376 3568 3.635510 GGAAGGACCGCCAGAGAT 58.364 61.111 1.92 0.00 36.29 2.75
3436 3628 5.222048 TGTTCTTAGCTTTACTGGGGATTGT 60.222 40.000 0.00 0.00 0.00 2.71
3449 3641 3.709653 TGGGGATTGTACTGTCTACCATC 59.290 47.826 0.00 0.00 0.00 3.51
3458 3650 5.814188 TGTACTGTCTACCATCTACGTACAG 59.186 44.000 7.57 7.57 38.97 2.74
3461 3653 3.376234 TGTCTACCATCTACGTACAGCAC 59.624 47.826 0.00 0.00 0.00 4.40
3481 3676 4.733405 GCACTTTTCTTGTTTTACCTGACG 59.267 41.667 0.00 0.00 0.00 4.35
3487 3682 1.508632 TGTTTTACCTGACGAGCAGC 58.491 50.000 0.00 0.00 43.50 5.25
3535 3739 5.449041 CCGTCACATATGAATTCACCAAAGG 60.449 44.000 11.07 3.72 36.31 3.11
3590 3794 3.436704 TGTTCGATTGATCAGCTGGAAAC 59.563 43.478 15.13 7.50 0.00 2.78
3619 3824 7.668886 GGATCAGTGATCTTTTTGATGGGATAT 59.331 37.037 27.89 0.00 38.91 1.63
3683 3888 4.587262 AGTTGGGGTCTTTATGGTTGTTTC 59.413 41.667 0.00 0.00 0.00 2.78
3713 3920 8.839343 CCCAATTGGAAAATTTTCATATTAGCC 58.161 33.333 26.60 12.33 38.92 3.93
3714 3921 8.839343 CCAATTGGAAAATTTTCATATTAGCCC 58.161 33.333 27.53 11.70 38.92 5.19
3766 3973 7.772166 AGCTAACAAAGAGCAAAAACTTTACT 58.228 30.769 0.00 0.00 42.69 2.24
3767 3974 8.899771 AGCTAACAAAGAGCAAAAACTTTACTA 58.100 29.630 0.00 0.00 42.69 1.82
3768 3975 9.511144 GCTAACAAAGAGCAAAAACTTTACTAA 57.489 29.630 0.00 0.00 39.84 2.24
3796 4003 8.731275 AAATGTTTTCGTACATGATAGGATCA 57.269 30.769 0.00 0.00 44.55 2.92
3797 4004 8.731275 AATGTTTTCGTACATGATAGGATCAA 57.269 30.769 0.00 0.00 43.50 2.57
3798 4005 8.908786 ATGTTTTCGTACATGATAGGATCAAT 57.091 30.769 0.00 0.00 43.50 2.57
3799 4006 8.731275 TGTTTTCGTACATGATAGGATCAATT 57.269 30.769 0.00 0.00 43.50 2.32
3800 4007 8.611757 TGTTTTCGTACATGATAGGATCAATTG 58.388 33.333 0.00 0.00 43.50 2.32
3801 4008 6.785488 TTCGTACATGATAGGATCAATTGC 57.215 37.500 0.00 0.00 43.50 3.56
3802 4009 4.923281 TCGTACATGATAGGATCAATTGCG 59.077 41.667 0.00 0.17 43.50 4.85
3803 4010 4.686091 CGTACATGATAGGATCAATTGCGT 59.314 41.667 0.00 0.00 43.50 5.24
3804 4011 5.177511 CGTACATGATAGGATCAATTGCGTT 59.822 40.000 0.00 0.00 43.50 4.84
3805 4012 6.292865 CGTACATGATAGGATCAATTGCGTTT 60.293 38.462 0.00 0.00 43.50 3.60
3806 4013 7.095816 CGTACATGATAGGATCAATTGCGTTTA 60.096 37.037 0.00 0.00 43.50 2.01
3807 4014 7.750229 ACATGATAGGATCAATTGCGTTTAT 57.250 32.000 0.00 0.00 43.50 1.40
3808 4015 7.587629 ACATGATAGGATCAATTGCGTTTATG 58.412 34.615 0.00 1.26 43.50 1.90
3809 4016 6.558771 TGATAGGATCAATTGCGTTTATGG 57.441 37.500 0.00 0.00 36.11 2.74
3810 4017 6.061441 TGATAGGATCAATTGCGTTTATGGT 58.939 36.000 0.00 0.00 36.11 3.55
3811 4018 4.900635 AGGATCAATTGCGTTTATGGTC 57.099 40.909 0.00 0.00 0.00 4.02
3812 4019 3.632145 AGGATCAATTGCGTTTATGGTCC 59.368 43.478 0.00 5.03 42.28 4.46
3813 4020 3.243401 GGATCAATTGCGTTTATGGTCCC 60.243 47.826 0.00 0.00 37.15 4.46
3814 4021 2.796557 TCAATTGCGTTTATGGTCCCA 58.203 42.857 0.00 0.00 0.00 4.37
3815 4022 3.157881 TCAATTGCGTTTATGGTCCCAA 58.842 40.909 0.00 0.00 0.00 4.12
3816 4023 3.192422 TCAATTGCGTTTATGGTCCCAAG 59.808 43.478 0.00 0.00 0.00 3.61
3817 4024 2.279935 TTGCGTTTATGGTCCCAAGT 57.720 45.000 0.00 0.00 0.00 3.16
3818 4025 1.816074 TGCGTTTATGGTCCCAAGTC 58.184 50.000 0.00 0.00 0.00 3.01
3819 4026 1.072489 TGCGTTTATGGTCCCAAGTCA 59.928 47.619 0.00 0.00 0.00 3.41
3820 4027 1.467342 GCGTTTATGGTCCCAAGTCAC 59.533 52.381 0.00 0.00 0.00 3.67
3821 4028 2.874457 GCGTTTATGGTCCCAAGTCACT 60.874 50.000 0.00 0.00 0.00 3.41
3822 4029 2.742053 CGTTTATGGTCCCAAGTCACTG 59.258 50.000 0.00 0.00 0.00 3.66
3823 4030 2.488153 GTTTATGGTCCCAAGTCACTGC 59.512 50.000 0.00 0.00 0.00 4.40
3824 4031 1.357137 TATGGTCCCAAGTCACTGCA 58.643 50.000 0.00 0.00 0.00 4.41
3825 4032 0.037303 ATGGTCCCAAGTCACTGCAG 59.963 55.000 13.48 13.48 0.00 4.41
3826 4033 1.344953 TGGTCCCAAGTCACTGCAGT 61.345 55.000 15.25 15.25 0.00 4.40
3827 4034 0.603975 GGTCCCAAGTCACTGCAGTC 60.604 60.000 18.64 6.95 0.00 3.51
3828 4035 0.106708 GTCCCAAGTCACTGCAGTCA 59.893 55.000 18.64 0.00 0.00 3.41
3829 4036 0.394192 TCCCAAGTCACTGCAGTCAG 59.606 55.000 18.64 7.18 45.71 3.51
3843 4050 6.398234 CTGCAGTCAGTAGTATAATCCACT 57.602 41.667 5.25 0.00 35.61 4.00
3844 4051 6.791867 TGCAGTCAGTAGTATAATCCACTT 57.208 37.500 0.00 0.00 0.00 3.16
3845 4052 6.573434 TGCAGTCAGTAGTATAATCCACTTG 58.427 40.000 0.00 0.00 0.00 3.16
3846 4053 6.154534 TGCAGTCAGTAGTATAATCCACTTGT 59.845 38.462 0.00 0.00 0.00 3.16
3847 4054 6.477033 GCAGTCAGTAGTATAATCCACTTGTG 59.523 42.308 0.00 0.00 0.00 3.33
3848 4055 7.630728 GCAGTCAGTAGTATAATCCACTTGTGA 60.631 40.741 1.89 0.00 0.00 3.58
3849 4056 8.251026 CAGTCAGTAGTATAATCCACTTGTGAA 58.749 37.037 1.89 0.00 0.00 3.18
3850 4057 8.470805 AGTCAGTAGTATAATCCACTTGTGAAG 58.529 37.037 1.89 0.00 0.00 3.02
3851 4058 7.222999 GTCAGTAGTATAATCCACTTGTGAAGC 59.777 40.741 1.89 0.00 0.00 3.86
3852 4059 6.480320 CAGTAGTATAATCCACTTGTGAAGCC 59.520 42.308 1.89 0.00 0.00 4.35
3853 4060 5.435686 AGTATAATCCACTTGTGAAGCCA 57.564 39.130 1.89 0.00 0.00 4.75
3854 4061 5.815581 AGTATAATCCACTTGTGAAGCCAA 58.184 37.500 1.89 0.00 0.00 4.52
3855 4062 6.426587 AGTATAATCCACTTGTGAAGCCAAT 58.573 36.000 1.89 0.00 0.00 3.16
3856 4063 6.891908 AGTATAATCCACTTGTGAAGCCAATT 59.108 34.615 1.89 0.00 0.00 2.32
3857 4064 4.961438 AATCCACTTGTGAAGCCAATTT 57.039 36.364 1.89 0.00 0.00 1.82
3858 4065 4.525912 ATCCACTTGTGAAGCCAATTTC 57.474 40.909 1.89 0.00 0.00 2.17
3859 4066 2.627699 TCCACTTGTGAAGCCAATTTCC 59.372 45.455 1.89 0.00 0.00 3.13
3860 4067 2.629617 CCACTTGTGAAGCCAATTTCCT 59.370 45.455 1.89 0.00 0.00 3.36
3861 4068 3.826157 CCACTTGTGAAGCCAATTTCCTA 59.174 43.478 1.89 0.00 0.00 2.94
3862 4069 4.463891 CCACTTGTGAAGCCAATTTCCTAT 59.536 41.667 1.89 0.00 0.00 2.57
3863 4070 5.047092 CCACTTGTGAAGCCAATTTCCTATT 60.047 40.000 1.89 0.00 0.00 1.73
3864 4071 6.458210 CACTTGTGAAGCCAATTTCCTATTT 58.542 36.000 0.00 0.00 0.00 1.40
3865 4072 6.587608 CACTTGTGAAGCCAATTTCCTATTTC 59.412 38.462 0.00 0.00 0.00 2.17
3866 4073 5.659440 TGTGAAGCCAATTTCCTATTTCC 57.341 39.130 0.00 0.00 0.00 3.13
3867 4074 5.332743 TGTGAAGCCAATTTCCTATTTCCT 58.667 37.500 0.00 0.00 0.00 3.36
3868 4075 6.489603 TGTGAAGCCAATTTCCTATTTCCTA 58.510 36.000 0.00 0.00 0.00 2.94
3869 4076 7.125391 TGTGAAGCCAATTTCCTATTTCCTAT 58.875 34.615 0.00 0.00 0.00 2.57
3870 4077 7.619302 TGTGAAGCCAATTTCCTATTTCCTATT 59.381 33.333 0.00 0.00 0.00 1.73
3871 4078 8.478066 GTGAAGCCAATTTCCTATTTCCTATTT 58.522 33.333 0.00 0.00 0.00 1.40
3872 4079 8.695456 TGAAGCCAATTTCCTATTTCCTATTTC 58.305 33.333 0.00 0.00 0.00 2.17
3873 4080 8.844865 AAGCCAATTTCCTATTTCCTATTTCT 57.155 30.769 0.00 0.00 0.00 2.52
3874 4081 8.242729 AGCCAATTTCCTATTTCCTATTTCTG 57.757 34.615 0.00 0.00 0.00 3.02
3875 4082 8.061304 AGCCAATTTCCTATTTCCTATTTCTGA 58.939 33.333 0.00 0.00 0.00 3.27
3876 4083 8.864087 GCCAATTTCCTATTTCCTATTTCTGAT 58.136 33.333 0.00 0.00 0.00 2.90
3891 4098 8.915654 CCTATTTCTGATTTTACTGTTTGTTGC 58.084 33.333 0.00 0.00 0.00 4.17
3892 4099 9.683069 CTATTTCTGATTTTACTGTTTGTTGCT 57.317 29.630 0.00 0.00 0.00 3.91
3893 4100 8.947055 ATTTCTGATTTTACTGTTTGTTGCTT 57.053 26.923 0.00 0.00 0.00 3.91
3895 4102 9.862371 TTTCTGATTTTACTGTTTGTTGCTTAA 57.138 25.926 0.00 0.00 0.00 1.85
3901 4108 9.830975 ATTTTACTGTTTGTTGCTTAATTTCCT 57.169 25.926 0.00 0.00 0.00 3.36
3902 4109 8.641499 TTTACTGTTTGTTGCTTAATTTCCTG 57.359 30.769 0.00 0.00 0.00 3.86
3903 4110 6.463995 ACTGTTTGTTGCTTAATTTCCTGA 57.536 33.333 0.00 0.00 0.00 3.86
3904 4111 6.872920 ACTGTTTGTTGCTTAATTTCCTGAA 58.127 32.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 9.611284 GGCAAACCTTTTAAATTTGATCAAATC 57.389 29.630 29.08 14.28 39.88 2.17
95 96 7.307219 CGTTGTTGTTGTTGGGTTTCTTAAAAA 60.307 33.333 0.00 0.00 0.00 1.94
96 97 6.145696 CGTTGTTGTTGTTGGGTTTCTTAAAA 59.854 34.615 0.00 0.00 0.00 1.52
97 98 5.634020 CGTTGTTGTTGTTGGGTTTCTTAAA 59.366 36.000 0.00 0.00 0.00 1.52
98 99 5.162075 CGTTGTTGTTGTTGGGTTTCTTAA 58.838 37.500 0.00 0.00 0.00 1.85
99 100 4.217983 ACGTTGTTGTTGTTGGGTTTCTTA 59.782 37.500 0.00 0.00 0.00 2.10
100 101 3.006003 ACGTTGTTGTTGTTGGGTTTCTT 59.994 39.130 0.00 0.00 0.00 2.52
101 102 2.559231 ACGTTGTTGTTGTTGGGTTTCT 59.441 40.909 0.00 0.00 0.00 2.52
102 103 2.918600 GACGTTGTTGTTGTTGGGTTTC 59.081 45.455 0.00 0.00 0.00 2.78
103 104 2.668834 CGACGTTGTTGTTGTTGGGTTT 60.669 45.455 0.00 0.00 0.00 3.27
104 105 1.135632 CGACGTTGTTGTTGTTGGGTT 60.136 47.619 0.00 0.00 0.00 4.11
105 106 0.448593 CGACGTTGTTGTTGTTGGGT 59.551 50.000 0.00 0.00 0.00 4.51
106 107 0.863957 GCGACGTTGTTGTTGTTGGG 60.864 55.000 4.37 0.00 0.00 4.12
107 108 0.179187 TGCGACGTTGTTGTTGTTGG 60.179 50.000 4.37 0.00 0.00 3.77
108 109 1.179332 CTGCGACGTTGTTGTTGTTG 58.821 50.000 4.37 0.00 0.00 3.33
109 110 0.522495 GCTGCGACGTTGTTGTTGTT 60.522 50.000 4.37 0.00 0.00 2.83
110 111 1.061887 GCTGCGACGTTGTTGTTGT 59.938 52.632 4.37 0.00 0.00 3.32
111 112 0.522286 TTGCTGCGACGTTGTTGTTG 60.522 50.000 4.37 0.00 0.00 3.33
112 113 0.169230 TTTGCTGCGACGTTGTTGTT 59.831 45.000 4.37 0.00 0.00 2.83
113 114 0.248054 CTTTGCTGCGACGTTGTTGT 60.248 50.000 4.37 0.00 0.00 3.32
114 115 0.248054 ACTTTGCTGCGACGTTGTTG 60.248 50.000 4.37 0.00 0.00 3.33
115 116 0.248054 CACTTTGCTGCGACGTTGTT 60.248 50.000 4.37 0.00 0.00 2.83
116 117 1.351707 CACTTTGCTGCGACGTTGT 59.648 52.632 4.37 0.00 0.00 3.32
117 118 2.005537 GCACTTTGCTGCGACGTTG 61.006 57.895 0.00 0.00 40.96 4.10
118 119 2.327940 GCACTTTGCTGCGACGTT 59.672 55.556 0.00 0.00 40.96 3.99
119 120 2.894879 TGCACTTTGCTGCGACGT 60.895 55.556 0.00 0.00 45.31 4.34
120 121 2.425773 GTGCACTTTGCTGCGACG 60.426 61.111 10.32 0.00 45.31 5.12
121 122 2.050985 GGTGCACTTTGCTGCGAC 60.051 61.111 17.98 0.00 45.31 5.19
122 123 3.286751 GGGTGCACTTTGCTGCGA 61.287 61.111 17.98 0.00 45.31 5.10
123 124 3.136345 TTGGGTGCACTTTGCTGCG 62.136 57.895 17.98 0.00 45.31 5.18
124 125 1.592400 GTTGGGTGCACTTTGCTGC 60.592 57.895 17.98 0.00 45.31 5.25
125 126 1.067916 GGTTGGGTGCACTTTGCTG 59.932 57.895 17.98 0.00 45.31 4.41
126 127 2.133641 GGGTTGGGTGCACTTTGCT 61.134 57.895 17.98 0.00 45.31 3.91
127 128 1.685355 AAGGGTTGGGTGCACTTTGC 61.685 55.000 17.98 5.20 45.29 3.68
128 129 0.389025 GAAGGGTTGGGTGCACTTTG 59.611 55.000 17.98 0.00 28.44 2.77
129 130 0.261696 AGAAGGGTTGGGTGCACTTT 59.738 50.000 17.98 0.41 28.44 2.66
130 131 1.073923 CTAGAAGGGTTGGGTGCACTT 59.926 52.381 17.98 0.13 31.39 3.16
131 132 0.693049 CTAGAAGGGTTGGGTGCACT 59.307 55.000 17.98 0.00 0.00 4.40
132 133 0.400594 ACTAGAAGGGTTGGGTGCAC 59.599 55.000 8.80 8.80 0.00 4.57
133 134 2.032965 TACTAGAAGGGTTGGGTGCA 57.967 50.000 0.00 0.00 0.00 4.57
134 135 4.262938 GGATATACTAGAAGGGTTGGGTGC 60.263 50.000 0.00 0.00 0.00 5.01
135 136 4.905456 TGGATATACTAGAAGGGTTGGGTG 59.095 45.833 0.00 0.00 0.00 4.61
136 137 4.906060 GTGGATATACTAGAAGGGTTGGGT 59.094 45.833 0.00 0.00 0.00 4.51
137 138 5.155905 AGTGGATATACTAGAAGGGTTGGG 58.844 45.833 0.00 0.00 0.00 4.12
138 139 8.437274 AATAGTGGATATACTAGAAGGGTTGG 57.563 38.462 0.00 0.00 36.66 3.77
139 140 8.532819 GGAATAGTGGATATACTAGAAGGGTTG 58.467 40.741 0.00 0.00 36.66 3.77
140 141 8.465971 AGGAATAGTGGATATACTAGAAGGGTT 58.534 37.037 0.00 0.00 36.66 4.11
141 142 8.013806 AGGAATAGTGGATATACTAGAAGGGT 57.986 38.462 0.00 0.00 36.66 4.34
142 143 9.992442 TTAGGAATAGTGGATATACTAGAAGGG 57.008 37.037 0.00 0.00 36.66 3.95
194 195 2.744202 GTGACAAGGTTGCATGACTAGG 59.256 50.000 0.00 0.00 0.00 3.02
254 255 5.009911 AGCACATGAGTAGAACAATGCAAAA 59.990 36.000 0.00 0.00 36.53 2.44
263 264 2.497675 TGGGAGAGCACATGAGTAGAAC 59.502 50.000 0.00 0.00 0.00 3.01
264 265 2.497675 GTGGGAGAGCACATGAGTAGAA 59.502 50.000 0.00 0.00 0.00 2.10
272 273 1.841919 TGATGATGTGGGAGAGCACAT 59.158 47.619 0.00 0.00 43.82 3.21
321 322 3.997762 TGCACGGCTAAAGAAACTTAGA 58.002 40.909 0.00 0.00 31.59 2.10
325 326 2.572290 AGTTGCACGGCTAAAGAAACT 58.428 42.857 0.00 0.00 0.00 2.66
326 327 4.403453 CATAGTTGCACGGCTAAAGAAAC 58.597 43.478 0.00 0.00 0.00 2.78
343 344 3.605634 TGATTTGCTTACGTGGCATAGT 58.394 40.909 16.44 0.00 39.54 2.12
349 350 4.637483 AATGGATGATTTGCTTACGTGG 57.363 40.909 0.00 0.00 0.00 4.94
384 385 4.599041 TGCATAGACTATGGCAAAAAGGT 58.401 39.130 21.32 0.00 36.68 3.50
385 386 5.508489 CCATGCATAGACTATGGCAAAAAGG 60.508 44.000 21.32 15.31 35.41 3.11
386 387 5.300034 TCCATGCATAGACTATGGCAAAAAG 59.700 40.000 21.32 11.81 40.87 2.27
415 416 3.380954 ACGCATGAATTTATGATGTGGCA 59.619 39.130 14.00 0.00 32.90 4.92
416 417 3.732219 CACGCATGAATTTATGATGTGGC 59.268 43.478 19.56 3.96 34.80 5.01
420 421 8.785468 TGATTAACACGCATGAATTTATGATG 57.215 30.769 14.00 12.36 0.00 3.07
504 505 3.059166 GCACACAAAATTGCCTAGTTGG 58.941 45.455 0.00 0.00 39.35 3.77
512 513 6.624710 TTAATATCGTGCACACAAAATTGC 57.375 33.333 18.64 0.00 39.33 3.56
524 525 7.979537 TGGGAGTGTCATATATTAATATCGTGC 59.020 37.037 11.28 8.80 0.00 5.34
525 526 9.302345 GTGGGAGTGTCATATATTAATATCGTG 57.698 37.037 11.28 11.55 0.00 4.35
526 527 9.256228 AGTGGGAGTGTCATATATTAATATCGT 57.744 33.333 11.28 0.00 0.00 3.73
531 532 8.645814 TCGTAGTGGGAGTGTCATATATTAAT 57.354 34.615 0.00 0.00 0.00 1.40
532 533 7.722728 ACTCGTAGTGGGAGTGTCATATATTAA 59.277 37.037 0.00 0.00 42.87 1.40
533 534 7.229308 ACTCGTAGTGGGAGTGTCATATATTA 58.771 38.462 0.00 0.00 42.87 0.98
534 535 6.069331 ACTCGTAGTGGGAGTGTCATATATT 58.931 40.000 0.00 0.00 42.87 1.28
535 536 5.632118 ACTCGTAGTGGGAGTGTCATATAT 58.368 41.667 0.00 0.00 42.87 0.86
536 537 5.045012 ACTCGTAGTGGGAGTGTCATATA 57.955 43.478 0.00 0.00 42.87 0.86
537 538 3.899726 ACTCGTAGTGGGAGTGTCATAT 58.100 45.455 0.00 0.00 42.87 1.78
539 540 2.217510 ACTCGTAGTGGGAGTGTCAT 57.782 50.000 0.00 0.00 42.87 3.06
540 541 2.708051 CTACTCGTAGTGGGAGTGTCA 58.292 52.381 4.79 0.00 44.14 3.58
543 544 0.739561 GGCTACTCGTAGTGGGAGTG 59.260 60.000 4.79 0.00 44.14 3.51
545 546 1.134560 GTTGGCTACTCGTAGTGGGAG 59.865 57.143 6.02 0.00 35.65 4.30
546 547 1.180029 GTTGGCTACTCGTAGTGGGA 58.820 55.000 6.02 0.00 35.65 4.37
548 549 1.183549 AGGTTGGCTACTCGTAGTGG 58.816 55.000 6.02 0.00 35.65 4.00
549 550 2.607187 CAAGGTTGGCTACTCGTAGTG 58.393 52.381 6.02 0.00 35.65 2.74
550 551 1.067071 GCAAGGTTGGCTACTCGTAGT 60.067 52.381 6.02 0.00 35.65 2.73
551 552 1.204941 AGCAAGGTTGGCTACTCGTAG 59.795 52.381 0.00 0.00 40.47 3.51
552 553 1.203994 GAGCAAGGTTGGCTACTCGTA 59.796 52.381 0.00 0.00 42.78 3.43
553 554 0.037232 GAGCAAGGTTGGCTACTCGT 60.037 55.000 0.00 0.00 42.78 4.18
554 555 0.247736 AGAGCAAGGTTGGCTACTCG 59.752 55.000 0.00 0.00 42.78 4.18
555 556 2.481289 AAGAGCAAGGTTGGCTACTC 57.519 50.000 0.00 0.00 42.78 2.59
556 557 2.027100 GGTAAGAGCAAGGTTGGCTACT 60.027 50.000 0.00 0.00 42.78 2.57
557 558 2.357075 GGTAAGAGCAAGGTTGGCTAC 58.643 52.381 0.00 0.00 42.78 3.58
558 559 1.280998 GGGTAAGAGCAAGGTTGGCTA 59.719 52.381 0.00 0.00 42.78 3.93
559 560 0.038310 GGGTAAGAGCAAGGTTGGCT 59.962 55.000 0.00 0.00 46.07 4.75
560 561 1.305930 CGGGTAAGAGCAAGGTTGGC 61.306 60.000 0.00 0.00 0.00 4.52
561 562 0.036306 ACGGGTAAGAGCAAGGTTGG 59.964 55.000 0.00 0.00 0.00 3.77
563 564 2.028385 CACTACGGGTAAGAGCAAGGTT 60.028 50.000 0.00 0.00 0.00 3.50
564 565 1.549170 CACTACGGGTAAGAGCAAGGT 59.451 52.381 0.00 0.00 0.00 3.50
565 566 1.134788 CCACTACGGGTAAGAGCAAGG 60.135 57.143 0.00 0.00 0.00 3.61
566 567 2.295253 CCACTACGGGTAAGAGCAAG 57.705 55.000 0.00 0.00 0.00 4.01
577 578 3.288964 ACAAGAGATACTCCCACTACGG 58.711 50.000 0.00 0.00 0.00 4.02
578 579 3.945921 TGACAAGAGATACTCCCACTACG 59.054 47.826 0.00 0.00 0.00 3.51
579 580 4.098196 GGTGACAAGAGATACTCCCACTAC 59.902 50.000 0.00 0.00 0.00 2.73
580 581 4.017407 AGGTGACAAGAGATACTCCCACTA 60.017 45.833 0.00 0.00 0.00 2.74
581 582 3.100671 GGTGACAAGAGATACTCCCACT 58.899 50.000 0.00 0.00 0.00 4.00
583 584 3.474798 AGGTGACAAGAGATACTCCCA 57.525 47.619 0.00 0.00 0.00 4.37
584 585 5.395435 GGTTTAGGTGACAAGAGATACTCCC 60.395 48.000 0.00 0.00 0.00 4.30
586 587 6.532988 AGGTTTAGGTGACAAGAGATACTC 57.467 41.667 0.00 0.00 0.00 2.59
587 588 6.070710 GGAAGGTTTAGGTGACAAGAGATACT 60.071 42.308 0.00 0.00 0.00 2.12
588 589 6.107343 GGAAGGTTTAGGTGACAAGAGATAC 58.893 44.000 0.00 0.00 0.00 2.24
589 590 5.783360 TGGAAGGTTTAGGTGACAAGAGATA 59.217 40.000 0.00 0.00 0.00 1.98
590 591 4.597507 TGGAAGGTTTAGGTGACAAGAGAT 59.402 41.667 0.00 0.00 0.00 2.75
591 592 3.971305 TGGAAGGTTTAGGTGACAAGAGA 59.029 43.478 0.00 0.00 0.00 3.10
592 593 4.351874 TGGAAGGTTTAGGTGACAAGAG 57.648 45.455 0.00 0.00 0.00 2.85
594 595 4.204012 TGTTGGAAGGTTTAGGTGACAAG 58.796 43.478 0.00 0.00 0.00 3.16
597 598 4.455877 CAGATGTTGGAAGGTTTAGGTGAC 59.544 45.833 0.00 0.00 0.00 3.67
621 622 3.061965 GTGAAAACAATGTGTGGTGCAAC 59.938 43.478 0.00 0.00 0.00 4.17
622 623 3.056250 AGTGAAAACAATGTGTGGTGCAA 60.056 39.130 0.00 0.00 0.00 4.08
623 624 2.495270 AGTGAAAACAATGTGTGGTGCA 59.505 40.909 0.00 0.00 0.00 4.57
625 626 4.096231 TGAGAGTGAAAACAATGTGTGGTG 59.904 41.667 0.00 0.00 0.00 4.17
626 627 4.269183 TGAGAGTGAAAACAATGTGTGGT 58.731 39.130 0.00 0.00 0.00 4.16
628 629 5.490139 ACTGAGAGTGAAAACAATGTGTG 57.510 39.130 0.00 0.00 0.00 3.82
640 641 7.578380 ATTTCATCGAAATCTCACTGAGAGTGA 60.578 37.037 14.12 6.89 43.70 3.41
641 642 6.534436 ATTTCATCGAAATCTCACTGAGAGTG 59.466 38.462 14.12 1.81 42.26 3.51
643 644 7.536895 AATTTCATCGAAATCTCACTGAGAG 57.463 36.000 14.12 1.36 42.26 3.20
644 645 7.912056 AAATTTCATCGAAATCTCACTGAGA 57.088 32.000 11.24 11.24 40.77 3.27
646 647 9.992910 CAATAAATTTCATCGAAATCTCACTGA 57.007 29.630 0.00 0.00 40.77 3.41
671 672 9.932207 AGTGATTGCTGAAATTATTGAAATTCA 57.068 25.926 0.00 0.00 34.15 2.57
673 674 9.932207 TCAGTGATTGCTGAAATTATTGAAATT 57.068 25.926 0.00 0.00 41.93 1.82
687 688 9.294030 GAAAGGTAAATATTTCAGTGATTGCTG 57.706 33.333 3.39 0.00 35.84 4.41
721 722 9.979578 TGTGTACTATTGAAATTGCTGATTTTT 57.020 25.926 0.00 0.00 38.06 1.94
782 783 9.515020 GCCGAAATATTCACTTAAATTGAATCA 57.485 29.630 12.95 4.34 41.73 2.57
783 784 8.968242 GGCCGAAATATTCACTTAAATTGAATC 58.032 33.333 12.95 2.99 41.73 2.52
787 788 8.702163 AAAGGCCGAAATATTCACTTAAATTG 57.298 30.769 0.00 0.00 0.00 2.32
818 819 6.689178 TTCAATTATTTCAGCTTGCGTTTC 57.311 33.333 0.00 0.00 0.00 2.78
842 843 7.037438 CCCAAAATCATCGAAATTCAGTGAAT 58.963 34.615 12.75 12.75 33.25 2.57
864 865 5.450453 TCAGAAAAATTTCAGTACCACCCA 58.550 37.500 8.47 0.00 39.61 4.51
872 873 7.761249 CACTTCCAGTTTCAGAAAAATTTCAGT 59.239 33.333 8.47 0.00 39.61 3.41
875 876 8.190784 TCTCACTTCCAGTTTCAGAAAAATTTC 58.809 33.333 0.00 0.00 37.45 2.17
900 901 3.072211 GGTATATAAGCGGGCAAGGTTC 58.928 50.000 0.09 0.00 33.53 3.62
901 902 2.440253 TGGTATATAAGCGGGCAAGGTT 59.560 45.455 0.00 2.51 35.81 3.50
904 905 3.244078 TGAGTGGTATATAAGCGGGCAAG 60.244 47.826 0.00 0.00 0.00 4.01
911 912 9.908152 AACTTTTGTTTTGAGTGGTATATAAGC 57.092 29.630 0.00 0.00 40.17 3.09
913 914 9.685828 GCAACTTTTGTTTTGAGTGGTATATAA 57.314 29.630 0.00 0.00 41.35 0.98
914 915 8.301002 GGCAACTTTTGTTTTGAGTGGTATATA 58.699 33.333 0.00 0.00 41.35 0.86
916 917 6.461788 GGGCAACTTTTGTTTTGAGTGGTATA 60.462 38.462 0.00 0.00 41.35 1.47
917 918 5.356426 GGCAACTTTTGTTTTGAGTGGTAT 58.644 37.500 0.00 0.00 41.35 2.73
918 919 4.382147 GGGCAACTTTTGTTTTGAGTGGTA 60.382 41.667 0.00 0.00 41.35 3.25
919 920 3.595173 GGCAACTTTTGTTTTGAGTGGT 58.405 40.909 0.00 0.00 41.35 4.16
920 921 2.935849 GGGCAACTTTTGTTTTGAGTGG 59.064 45.455 0.00 0.00 41.35 4.00
923 924 2.935849 GTGGGGCAACTTTTGTTTTGAG 59.064 45.455 0.00 0.00 41.35 3.02
924 925 2.675317 CGTGGGGCAACTTTTGTTTTGA 60.675 45.455 0.00 0.00 41.35 2.69
925 926 1.663135 CGTGGGGCAACTTTTGTTTTG 59.337 47.619 0.00 0.00 41.35 2.44
930 931 1.067250 CCACGTGGGGCAACTTTTG 59.933 57.895 27.57 0.00 0.00 2.44
941 942 1.066143 ACTCTAGAAATGGCCACGTGG 60.066 52.381 30.66 30.66 38.53 4.94
944 945 3.520290 TGTACTCTAGAAATGGCCACG 57.480 47.619 8.16 0.00 0.00 4.94
962 963 1.035932 CCACGGAGGAGACGGTATGT 61.036 60.000 0.00 0.00 41.22 2.29
1326 1516 2.669569 TTGAGCACGAAGGGCAGC 60.670 61.111 0.00 0.00 0.00 5.25
1378 1568 2.361610 CACTCCATGGGTGGCCAC 60.362 66.667 28.57 28.57 45.63 5.01
1440 1630 2.544685 GACGCATATGAGTGCAGAAGT 58.455 47.619 17.32 0.00 45.30 3.01
1443 1633 0.249031 CCGACGCATATGAGTGCAGA 60.249 55.000 17.32 0.00 45.30 4.26
1463 1653 4.361971 AGTCCCTCAGCGACCCGA 62.362 66.667 0.00 0.00 0.00 5.14
1474 1664 0.041386 AAGAACCGCCTAGAGTCCCT 59.959 55.000 0.00 0.00 0.00 4.20
1527 1717 1.069204 CCTCCGATCATCGTGTTCCAT 59.931 52.381 6.25 0.00 38.40 3.41
1542 1732 2.821366 GCCTGTGCACATCCTCCG 60.821 66.667 22.00 7.30 37.47 4.63
1545 1735 2.353958 CCTGCCTGTGCACATCCT 59.646 61.111 22.00 0.00 44.23 3.24
1550 1740 3.640407 TCTCCCCTGCCTGTGCAC 61.640 66.667 10.75 10.75 44.23 4.57
1577 1767 1.153066 TCTCCAAACAAGGCGCACA 60.153 52.632 10.83 0.00 0.00 4.57
1659 1849 3.990959 ACCTCAAGATTTCCCTCACTC 57.009 47.619 0.00 0.00 0.00 3.51
1716 1906 2.599677 AGAATCAGATCTACCCGGGAC 58.400 52.381 32.02 12.62 0.00 4.46
1790 1980 3.825014 GGGCATCATGTCAAAGCATCTAT 59.175 43.478 0.00 0.00 0.00 1.98
1869 2059 2.004733 CAATCTCTCGCAGCATCAACA 58.995 47.619 0.00 0.00 0.00 3.33
2024 2214 0.250513 GAGGACACCAGCCAAGGTAG 59.749 60.000 0.00 0.00 40.77 3.18
2064 2254 1.371467 TCCTTCCAGAGGCCAAATCA 58.629 50.000 5.01 0.00 45.87 2.57
2139 2329 8.496751 CATCTTGCATACATATCAAGAAGTGAG 58.503 37.037 7.81 0.00 46.08 3.51
2236 2426 1.802960 CATGGCTAGCGCTCCAATAAG 59.197 52.381 20.47 9.95 35.75 1.73
2299 2489 2.911636 CAGGGGAGAAGGCATCAGATAT 59.088 50.000 0.00 0.00 0.00 1.63
2442 2632 0.524816 GCAGATCAACCATGCAAGCG 60.525 55.000 0.00 0.00 39.75 4.68
2499 2689 7.040201 TCAGGCTTCATTGGCATATCTTTTATC 60.040 37.037 0.00 0.00 34.73 1.75
2526 2716 0.689080 ATGCACCCCAAACCACAACA 60.689 50.000 0.00 0.00 0.00 3.33
2625 2815 2.519013 AGGACAAACAAGCCTCCATTC 58.481 47.619 0.00 0.00 0.00 2.67
2658 2848 4.042809 TCCCACTGGTGAGTTTCATACAAT 59.957 41.667 1.93 0.00 0.00 2.71
2792 2982 3.405831 TCACTTGAGCTTTCATGTCTGG 58.594 45.455 0.00 0.00 0.00 3.86
2822 3012 0.111061 TGCCAACTGATCAACTGCCT 59.889 50.000 0.00 0.00 0.00 4.75
2928 3118 3.752665 CATCAGGCTCAGAATGGCTATT 58.247 45.455 0.00 0.00 38.29 1.73
2936 3126 0.107800 GCTCTGCATCAGGCTCAGAA 60.108 55.000 5.31 0.00 45.15 3.02
3036 3226 6.786967 TGAACCTAGGGATACTTTCACTAC 57.213 41.667 14.81 0.00 39.45 2.73
3049 3239 7.889589 GTTCAAAATTCAAATGAACCTAGGG 57.110 36.000 14.81 0.00 44.42 3.53
3133 3325 3.280295 TGCAGGTTTACGTCAAAGGAAA 58.720 40.909 0.00 0.00 0.00 3.13
3143 3335 2.986479 GCAGGAAAAATGCAGGTTTACG 59.014 45.455 0.00 0.00 43.31 3.18
3200 3392 0.187117 TTGATTGCCCCAGTGAACCA 59.813 50.000 0.00 0.00 0.00 3.67
3216 3408 3.807622 GTCGGTTGAGTTGATTGAGTTGA 59.192 43.478 0.00 0.00 0.00 3.18
3222 3414 3.121279 CGTACAGTCGGTTGAGTTGATTG 59.879 47.826 0.00 0.00 0.00 2.67
3223 3415 3.314553 CGTACAGTCGGTTGAGTTGATT 58.685 45.455 0.00 0.00 0.00 2.57
3224 3416 2.352421 CCGTACAGTCGGTTGAGTTGAT 60.352 50.000 0.00 0.00 44.77 2.57
3225 3417 1.001048 CCGTACAGTCGGTTGAGTTGA 60.001 52.381 0.00 0.00 44.77 3.18
3226 3418 1.415374 CCGTACAGTCGGTTGAGTTG 58.585 55.000 0.00 0.00 44.77 3.16
3227 3419 3.879912 CCGTACAGTCGGTTGAGTT 57.120 52.632 0.00 0.00 44.77 3.01
3228 3420 3.958935 CTGTCCGTACAGTCGGTTGAGT 61.959 54.545 0.00 0.00 46.76 3.41
3229 3421 1.401148 CTGTCCGTACAGTCGGTTGAG 60.401 57.143 0.00 3.51 46.76 3.02
3230 3422 0.594602 CTGTCCGTACAGTCGGTTGA 59.405 55.000 0.00 0.00 46.76 3.18
3244 3436 0.685097 TGCCACTGACCTAACTGTCC 59.315 55.000 0.00 0.00 34.25 4.02
3320 3512 9.998106 TTACTGTTTATGAGCTTTAGTTTCTCT 57.002 29.630 0.00 0.00 0.00 3.10
3436 3628 4.813161 GCTGTACGTAGATGGTAGACAGTA 59.187 45.833 10.14 0.00 0.00 2.74
3449 3641 5.652744 AACAAGAAAAGTGCTGTACGTAG 57.347 39.130 0.00 0.00 0.00 3.51
3458 3650 4.733405 CGTCAGGTAAAACAAGAAAAGTGC 59.267 41.667 0.00 0.00 0.00 4.40
3461 3653 5.205565 GCTCGTCAGGTAAAACAAGAAAAG 58.794 41.667 0.00 0.00 0.00 2.27
3487 3682 4.361451 AACTTTCTGTTGCACAGTCAAG 57.639 40.909 13.59 16.28 46.03 3.02
3498 3693 3.188159 TGTGACGGCTAACTTTCTGTT 57.812 42.857 0.00 0.00 42.31 3.16
3535 3739 5.596845 TGCCAAAAATACAAACACCTCTTC 58.403 37.500 0.00 0.00 0.00 2.87
3590 3794 5.067413 CCATCAAAAAGATCACTGATCCCAG 59.933 44.000 14.41 2.77 39.66 4.45
3619 3824 2.225522 TGCCTGGCCTGCCTAGTATATA 60.226 50.000 17.53 0.00 36.94 0.86
3664 3869 5.184479 GGTAAGAAACAACCATAAAGACCCC 59.816 44.000 0.00 0.00 35.73 4.95
3671 3876 6.782988 TCCAATTGGGTAAGAAACAACCATAA 59.217 34.615 24.29 0.00 37.51 1.90
3672 3877 6.315714 TCCAATTGGGTAAGAAACAACCATA 58.684 36.000 24.29 0.00 37.51 2.74
3735 3942 9.599866 AGTTTTTGCTCTTTGTTAGCTATTTTT 57.400 25.926 0.00 0.00 40.73 1.94
3770 3977 9.825109 TGATCCTATCATGTACGAAAACATTTA 57.175 29.630 0.00 0.00 38.01 1.40
3771 3978 8.731275 TGATCCTATCATGTACGAAAACATTT 57.269 30.769 0.00 0.00 38.01 2.32
3772 3979 8.731275 TTGATCCTATCATGTACGAAAACATT 57.269 30.769 0.00 0.00 38.01 2.71
3773 3980 8.908786 ATTGATCCTATCATGTACGAAAACAT 57.091 30.769 0.00 0.00 40.75 2.71
3774 3981 8.611757 CAATTGATCCTATCATGTACGAAAACA 58.388 33.333 0.00 0.00 39.39 2.83
3775 3982 7.587757 GCAATTGATCCTATCATGTACGAAAAC 59.412 37.037 10.34 0.00 39.39 2.43
3776 3983 7.518211 CGCAATTGATCCTATCATGTACGAAAA 60.518 37.037 10.34 0.00 39.39 2.29
3777 3984 6.073819 CGCAATTGATCCTATCATGTACGAAA 60.074 38.462 10.34 0.00 39.39 3.46
3778 3985 5.405269 CGCAATTGATCCTATCATGTACGAA 59.595 40.000 10.34 0.00 39.39 3.85
3779 3986 4.923281 CGCAATTGATCCTATCATGTACGA 59.077 41.667 10.34 0.00 39.39 3.43
3780 3987 4.686091 ACGCAATTGATCCTATCATGTACG 59.314 41.667 10.34 0.15 39.39 3.67
3781 3988 6.545504 AACGCAATTGATCCTATCATGTAC 57.454 37.500 10.34 0.00 39.39 2.90
3782 3989 8.720562 CATAAACGCAATTGATCCTATCATGTA 58.279 33.333 10.34 0.00 39.39 2.29
3783 3990 7.308770 CCATAAACGCAATTGATCCTATCATGT 60.309 37.037 10.34 0.00 39.39 3.21
3784 3991 7.025365 CCATAAACGCAATTGATCCTATCATG 58.975 38.462 10.34 1.81 39.39 3.07
3785 3992 6.716628 ACCATAAACGCAATTGATCCTATCAT 59.283 34.615 10.34 0.00 39.39 2.45
3786 3993 6.061441 ACCATAAACGCAATTGATCCTATCA 58.939 36.000 10.34 0.00 37.55 2.15
3787 3994 6.348540 GGACCATAAACGCAATTGATCCTATC 60.349 42.308 10.34 0.00 0.00 2.08
3788 3995 5.473504 GGACCATAAACGCAATTGATCCTAT 59.526 40.000 10.34 0.00 0.00 2.57
3789 3996 4.819630 GGACCATAAACGCAATTGATCCTA 59.180 41.667 10.34 0.00 0.00 2.94
3790 3997 3.632145 GGACCATAAACGCAATTGATCCT 59.368 43.478 10.34 0.00 0.00 3.24
3791 3998 3.243401 GGGACCATAAACGCAATTGATCC 60.243 47.826 10.34 1.30 0.00 3.36
3792 3999 3.380004 TGGGACCATAAACGCAATTGATC 59.620 43.478 10.34 0.00 0.00 2.92
3793 4000 3.360867 TGGGACCATAAACGCAATTGAT 58.639 40.909 10.34 0.00 0.00 2.57
3794 4001 2.796557 TGGGACCATAAACGCAATTGA 58.203 42.857 10.34 0.00 0.00 2.57
3795 4002 3.056891 ACTTGGGACCATAAACGCAATTG 60.057 43.478 0.00 0.00 38.04 2.32
3796 4003 3.161866 ACTTGGGACCATAAACGCAATT 58.838 40.909 0.00 0.00 38.04 2.32
3797 4004 2.752903 GACTTGGGACCATAAACGCAAT 59.247 45.455 0.00 0.00 38.04 3.56
3798 4005 2.156098 GACTTGGGACCATAAACGCAA 58.844 47.619 0.00 0.00 37.39 4.85
3799 4006 1.072489 TGACTTGGGACCATAAACGCA 59.928 47.619 0.00 0.00 0.00 5.24
3800 4007 1.467342 GTGACTTGGGACCATAAACGC 59.533 52.381 0.00 0.00 0.00 4.84
3801 4008 2.742053 CAGTGACTTGGGACCATAAACG 59.258 50.000 0.00 0.00 0.00 3.60
3802 4009 2.488153 GCAGTGACTTGGGACCATAAAC 59.512 50.000 0.00 0.00 0.00 2.01
3803 4010 2.107378 TGCAGTGACTTGGGACCATAAA 59.893 45.455 0.00 0.00 0.00 1.40
3804 4011 1.702401 TGCAGTGACTTGGGACCATAA 59.298 47.619 0.00 0.00 0.00 1.90
3805 4012 1.278985 CTGCAGTGACTTGGGACCATA 59.721 52.381 5.25 0.00 0.00 2.74
3806 4013 0.037303 CTGCAGTGACTTGGGACCAT 59.963 55.000 5.25 0.00 0.00 3.55
3807 4014 1.344953 ACTGCAGTGACTTGGGACCA 61.345 55.000 20.97 0.00 0.00 4.02
3808 4015 0.603975 GACTGCAGTGACTTGGGACC 60.604 60.000 27.27 0.95 0.00 4.46
3809 4016 0.106708 TGACTGCAGTGACTTGGGAC 59.893 55.000 27.27 6.78 0.00 4.46
3810 4017 0.394192 CTGACTGCAGTGACTTGGGA 59.606 55.000 27.27 0.00 37.37 4.37
3811 4018 2.924185 CTGACTGCAGTGACTTGGG 58.076 57.895 27.27 0.00 37.37 4.12
3821 4028 6.154534 ACAAGTGGATTATACTACTGACTGCA 59.845 38.462 0.00 0.00 32.26 4.41
3822 4029 6.477033 CACAAGTGGATTATACTACTGACTGC 59.523 42.308 0.00 0.00 32.26 4.40
3823 4030 7.772166 TCACAAGTGGATTATACTACTGACTG 58.228 38.462 0.00 0.00 32.26 3.51
3824 4031 7.956328 TCACAAGTGGATTATACTACTGACT 57.044 36.000 0.00 0.00 32.26 3.41
3825 4032 7.222999 GCTTCACAAGTGGATTATACTACTGAC 59.777 40.741 0.00 0.00 32.26 3.51
3826 4033 7.265673 GCTTCACAAGTGGATTATACTACTGA 58.734 38.462 0.00 0.00 32.26 3.41
3827 4034 6.480320 GGCTTCACAAGTGGATTATACTACTG 59.520 42.308 0.00 0.00 32.26 2.74
3828 4035 6.156256 TGGCTTCACAAGTGGATTATACTACT 59.844 38.462 0.00 0.00 33.22 2.57
3829 4036 6.346096 TGGCTTCACAAGTGGATTATACTAC 58.654 40.000 0.00 0.00 0.00 2.73
3830 4037 6.553953 TGGCTTCACAAGTGGATTATACTA 57.446 37.500 0.00 0.00 0.00 1.82
3831 4038 5.435686 TGGCTTCACAAGTGGATTATACT 57.564 39.130 0.00 0.00 0.00 2.12
3832 4039 6.699575 ATTGGCTTCACAAGTGGATTATAC 57.300 37.500 0.00 0.00 33.23 1.47
3833 4040 7.147915 GGAAATTGGCTTCACAAGTGGATTATA 60.148 37.037 0.00 0.00 33.23 0.98
3834 4041 6.351286 GGAAATTGGCTTCACAAGTGGATTAT 60.351 38.462 0.00 0.00 33.23 1.28
3835 4042 5.047377 GGAAATTGGCTTCACAAGTGGATTA 60.047 40.000 0.00 0.00 33.23 1.75
3836 4043 4.262592 GGAAATTGGCTTCACAAGTGGATT 60.263 41.667 0.00 0.00 33.23 3.01
3837 4044 3.259123 GGAAATTGGCTTCACAAGTGGAT 59.741 43.478 0.00 0.00 33.23 3.41
3838 4045 2.627699 GGAAATTGGCTTCACAAGTGGA 59.372 45.455 0.00 0.00 33.23 4.02
3839 4046 2.629617 AGGAAATTGGCTTCACAAGTGG 59.370 45.455 0.00 0.00 33.23 4.00
3840 4047 5.649782 ATAGGAAATTGGCTTCACAAGTG 57.350 39.130 0.00 0.00 33.23 3.16
3841 4048 6.295292 GGAAATAGGAAATTGGCTTCACAAGT 60.295 38.462 0.00 0.00 33.23 3.16
3842 4049 6.071165 AGGAAATAGGAAATTGGCTTCACAAG 60.071 38.462 0.00 0.00 33.23 3.16
3843 4050 5.779771 AGGAAATAGGAAATTGGCTTCACAA 59.220 36.000 0.00 0.00 34.41 3.33
3844 4051 5.332743 AGGAAATAGGAAATTGGCTTCACA 58.667 37.500 0.00 0.00 0.00 3.58
3845 4052 5.921962 AGGAAATAGGAAATTGGCTTCAC 57.078 39.130 0.00 0.00 0.00 3.18
3846 4053 8.608185 AAATAGGAAATAGGAAATTGGCTTCA 57.392 30.769 0.00 0.00 0.00 3.02
3847 4054 8.918116 AGAAATAGGAAATAGGAAATTGGCTTC 58.082 33.333 0.00 0.00 0.00 3.86
3848 4055 8.699130 CAGAAATAGGAAATAGGAAATTGGCTT 58.301 33.333 0.00 0.00 0.00 4.35
3849 4056 8.061304 TCAGAAATAGGAAATAGGAAATTGGCT 58.939 33.333 0.00 0.00 0.00 4.75
3850 4057 8.237811 TCAGAAATAGGAAATAGGAAATTGGC 57.762 34.615 0.00 0.00 0.00 4.52
3865 4072 8.915654 GCAACAAACAGTAAAATCAGAAATAGG 58.084 33.333 0.00 0.00 0.00 2.57
3866 4073 9.683069 AGCAACAAACAGTAAAATCAGAAATAG 57.317 29.630 0.00 0.00 0.00 1.73
3868 4075 8.947055 AAGCAACAAACAGTAAAATCAGAAAT 57.053 26.923 0.00 0.00 0.00 2.17
3869 4076 9.862371 TTAAGCAACAAACAGTAAAATCAGAAA 57.138 25.926 0.00 0.00 0.00 2.52
3875 4082 9.830975 AGGAAATTAAGCAACAAACAGTAAAAT 57.169 25.926 0.00 0.00 0.00 1.82
3876 4083 9.092876 CAGGAAATTAAGCAACAAACAGTAAAA 57.907 29.630 0.00 0.00 0.00 1.52
3877 4084 8.470805 TCAGGAAATTAAGCAACAAACAGTAAA 58.529 29.630 0.00 0.00 0.00 2.01
3878 4085 8.001881 TCAGGAAATTAAGCAACAAACAGTAA 57.998 30.769 0.00 0.00 0.00 2.24
3879 4086 7.575414 TCAGGAAATTAAGCAACAAACAGTA 57.425 32.000 0.00 0.00 0.00 2.74
3880 4087 6.463995 TCAGGAAATTAAGCAACAAACAGT 57.536 33.333 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.