Multiple sequence alignment - TraesCS7D01G375200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G375200 chr7D 100.000 5653 0 0 1350 7002 485522486 485516834 0.000000e+00 10440.0
1 TraesCS7D01G375200 chr7D 100.000 1028 0 0 1 1028 485523835 485522808 0.000000e+00 1899.0
2 TraesCS7D01G375200 chr7A 95.770 5697 160 31 1351 7002 553753627 553747967 0.000000e+00 9110.0
3 TraesCS7D01G375200 chr7A 89.881 504 27 10 535 1028 553754186 553753697 1.660000e-175 627.0
4 TraesCS7D01G375200 chr7A 87.624 202 23 2 334 534 553754480 553754280 4.220000e-57 233.0
5 TraesCS7D01G375200 chr7A 90.164 61 4 2 532 590 507171018 507171078 2.090000e-10 78.7
6 TraesCS7D01G375200 chr7B 92.921 5679 326 48 1352 7002 513247168 513241538 0.000000e+00 8191.0
7 TraesCS7D01G375200 chr7B 86.161 448 22 13 596 1028 513247630 513247208 1.390000e-121 448.0
8 TraesCS7D01G375200 chr7B 85.455 110 15 1 431 540 118222498 118222390 5.740000e-21 113.0
9 TraesCS7D01G375200 chr2D 89.216 102 10 1 439 540 347450784 347450684 7.370000e-25 126.0
10 TraesCS7D01G375200 chr2D 87.850 107 12 1 434 540 106145482 106145587 2.650000e-24 124.0
11 TraesCS7D01G375200 chr6D 98.571 70 1 0 265 334 436676759 436676690 2.650000e-24 124.0
12 TraesCS7D01G375200 chr6D 88.119 101 12 0 436 536 46945216 46945316 3.430000e-23 121.0
13 TraesCS7D01G375200 chr5D 98.571 70 1 0 265 334 6167349 6167280 2.650000e-24 124.0
14 TraesCS7D01G375200 chr5D 98.571 70 1 0 265 334 6266378 6266309 2.650000e-24 124.0
15 TraesCS7D01G375200 chr5D 98.571 70 1 0 265 334 503301503 503301572 2.650000e-24 124.0
16 TraesCS7D01G375200 chr5D 87.379 103 12 1 438 540 300161896 300161997 4.440000e-22 117.0
17 TraesCS7D01G375200 chr3D 98.571 70 1 0 265 334 200308690 200308621 2.650000e-24 124.0
18 TraesCS7D01G375200 chr3D 87.736 106 8 5 437 540 94515603 94515501 1.230000e-22 119.0
19 TraesCS7D01G375200 chr3D 88.406 69 4 4 532 596 254669254 254669186 5.820000e-11 80.5
20 TraesCS7D01G375200 chr3D 88.679 53 4 2 532 582 254690629 254690681 5.860000e-06 63.9
21 TraesCS7D01G375200 chr1D 98.571 70 1 0 265 334 30128312 30128381 2.650000e-24 124.0
22 TraesCS7D01G375200 chr1D 98.571 70 1 0 265 334 246422081 246422150 2.650000e-24 124.0
23 TraesCS7D01G375200 chr1D 98.571 70 1 0 265 334 459907486 459907555 2.650000e-24 124.0
24 TraesCS7D01G375200 chr1D 87.500 104 10 3 438 540 486404118 486404219 4.440000e-22 117.0
25 TraesCS7D01G375200 chr1D 91.935 62 3 2 532 591 258301967 258302028 1.250000e-12 86.1
26 TraesCS7D01G375200 chr1D 94.231 52 2 1 540 590 464560361 464560412 2.090000e-10 78.7
27 TraesCS7D01G375200 chr4B 90.625 96 4 5 257 349 91323363 91323270 9.540000e-24 122.0
28 TraesCS7D01G375200 chrUn 86.916 107 10 4 435 540 35732793 35732896 4.440000e-22 117.0
29 TraesCS7D01G375200 chrUn 86.916 107 10 4 435 540 242149518 242149415 4.440000e-22 117.0
30 TraesCS7D01G375200 chr4D 93.750 48 2 1 544 590 4081055 4081102 3.500000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G375200 chr7D 485516834 485523835 7001 True 6169.500000 10440 100.000000 1 7002 2 chr7D.!!$R1 7001
1 TraesCS7D01G375200 chr7A 553747967 553754480 6513 True 3323.333333 9110 91.091667 334 7002 3 chr7A.!!$R1 6668
2 TraesCS7D01G375200 chr7B 513241538 513247630 6092 True 4319.500000 8191 89.541000 596 7002 2 chr7B.!!$R2 6406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
332 333 0.106868 TCGGAGTCCTTATGCGAGGA 60.107 55.000 7.77 0.00 43.47 3.71 F
910 1010 0.321653 CCCCCTGAACCTGAAGAACG 60.322 60.000 0.00 0.00 0.00 3.95 F
1772 1909 0.818040 AGGACCACTTGTTTGGCGAC 60.818 55.000 0.00 0.00 40.77 5.19 F
1833 1974 0.884259 GGCCGCTTTTGGTTTGCAAT 60.884 50.000 0.00 0.00 0.00 3.56 F
3189 3343 1.202940 GGGACTGGAGGAAGCACTTTT 60.203 52.381 0.00 0.00 0.00 2.27 F
3352 3509 0.392998 AAGAGCAATACCCACAGCCG 60.393 55.000 0.00 0.00 0.00 5.52 F
3910 4067 6.612306 AGCCAGTTAAATCGATTTTTCTGTC 58.388 36.000 30.27 25.05 32.62 3.51 F
4440 4605 1.065709 TGGCGTCTTAAACCCCTGATC 60.066 52.381 0.00 0.00 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1793 0.037303 ATTATGATGCAGAGGCCGGG 59.963 55.000 2.18 0.00 40.13 5.73 R
2010 2162 0.757188 AAATCCCAAACGTGTGGCCA 60.757 50.000 20.15 0.00 37.34 5.36 R
3169 3323 0.402121 AAAGTGCTTCCTCCAGTCCC 59.598 55.000 0.00 0.00 0.00 4.46 R
3352 3509 2.416836 GGTATTTTCTTTGAAGGCGGCC 60.417 50.000 12.11 12.11 0.00 6.13 R
4001 4158 0.451783 CCGATAACCCAACAAGCTGC 59.548 55.000 0.00 0.00 0.00 5.25 R
4218 4375 2.472695 AGCGGTATCAAAAGACAGCA 57.527 45.000 0.00 0.00 39.80 4.41 R
5730 5900 1.284785 GACAGAAATGGGGGATGGACA 59.715 52.381 0.00 0.00 0.00 4.02 R
6008 6178 0.457853 GCCGCTGACATCTTACACGA 60.458 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.810870 ACACTTAGACCTATATTACTCCCTAAG 57.189 37.037 0.00 0.00 38.34 2.18
44 45 8.741841 CACTTAGACCTATATTACTCCCTAAGC 58.258 40.741 0.00 0.00 36.80 3.09
45 46 7.894897 ACTTAGACCTATATTACTCCCTAAGCC 59.105 40.741 0.00 0.00 36.80 4.35
46 47 5.262804 AGACCTATATTACTCCCTAAGCCG 58.737 45.833 0.00 0.00 0.00 5.52
47 48 4.351127 ACCTATATTACTCCCTAAGCCGG 58.649 47.826 0.00 0.00 0.00 6.13
48 49 4.045079 ACCTATATTACTCCCTAAGCCGGA 59.955 45.833 5.05 0.00 0.00 5.14
66 67 3.390280 AGCTTGGCTCTAGGACACT 57.610 52.632 0.00 0.00 30.62 3.55
67 68 2.534042 AGCTTGGCTCTAGGACACTA 57.466 50.000 0.00 0.00 30.62 2.74
68 69 2.821437 AGCTTGGCTCTAGGACACTAA 58.179 47.619 0.00 0.00 30.62 2.24
69 70 2.763448 AGCTTGGCTCTAGGACACTAAG 59.237 50.000 0.00 0.00 30.62 2.18
70 71 2.761208 GCTTGGCTCTAGGACACTAAGA 59.239 50.000 0.00 0.00 29.21 2.10
71 72 3.386402 GCTTGGCTCTAGGACACTAAGAT 59.614 47.826 0.00 0.00 29.21 2.40
72 73 4.739137 GCTTGGCTCTAGGACACTAAGATG 60.739 50.000 0.00 0.00 29.21 2.90
73 74 2.695666 TGGCTCTAGGACACTAAGATGC 59.304 50.000 0.00 0.00 0.00 3.91
74 75 2.287909 GGCTCTAGGACACTAAGATGCG 60.288 54.545 0.00 0.00 0.00 4.73
75 76 2.287909 GCTCTAGGACACTAAGATGCGG 60.288 54.545 0.00 0.00 0.00 5.69
76 77 3.215151 CTCTAGGACACTAAGATGCGGA 58.785 50.000 0.00 0.00 0.00 5.54
77 78 3.823873 CTCTAGGACACTAAGATGCGGAT 59.176 47.826 0.00 0.00 0.00 4.18
78 79 4.215908 TCTAGGACACTAAGATGCGGATT 58.784 43.478 0.00 0.00 0.00 3.01
79 80 3.460857 AGGACACTAAGATGCGGATTC 57.539 47.619 0.00 0.00 0.00 2.52
80 81 2.766263 AGGACACTAAGATGCGGATTCA 59.234 45.455 0.00 0.00 0.00 2.57
81 82 3.126831 GGACACTAAGATGCGGATTCAG 58.873 50.000 0.00 0.00 0.00 3.02
82 83 3.181475 GGACACTAAGATGCGGATTCAGA 60.181 47.826 0.00 0.00 0.00 3.27
83 84 4.047822 GACACTAAGATGCGGATTCAGAG 58.952 47.826 0.00 0.00 0.00 3.35
84 85 3.181471 ACACTAAGATGCGGATTCAGAGG 60.181 47.826 0.00 0.00 0.00 3.69
85 86 2.366916 ACTAAGATGCGGATTCAGAGGG 59.633 50.000 0.00 0.00 0.00 4.30
86 87 0.471617 AAGATGCGGATTCAGAGGGG 59.528 55.000 0.00 0.00 0.00 4.79
87 88 0.692419 AGATGCGGATTCAGAGGGGT 60.692 55.000 0.00 0.00 0.00 4.95
88 89 0.533755 GATGCGGATTCAGAGGGGTG 60.534 60.000 0.00 0.00 0.00 4.61
89 90 1.987807 ATGCGGATTCAGAGGGGTGG 61.988 60.000 0.00 0.00 0.00 4.61
90 91 2.190578 CGGATTCAGAGGGGTGGC 59.809 66.667 0.00 0.00 0.00 5.01
91 92 2.597903 GGATTCAGAGGGGTGGCC 59.402 66.667 0.00 0.00 0.00 5.36
92 93 2.308722 GGATTCAGAGGGGTGGCCA 61.309 63.158 0.00 0.00 0.00 5.36
93 94 1.691219 GATTCAGAGGGGTGGCCAA 59.309 57.895 7.24 0.00 0.00 4.52
94 95 0.681243 GATTCAGAGGGGTGGCCAAC 60.681 60.000 14.15 14.15 0.00 3.77
95 96 2.484287 ATTCAGAGGGGTGGCCAACG 62.484 60.000 16.31 0.00 0.00 4.10
96 97 3.636231 CAGAGGGGTGGCCAACGA 61.636 66.667 16.31 0.00 0.00 3.85
97 98 3.322466 AGAGGGGTGGCCAACGAG 61.322 66.667 16.31 0.00 0.00 4.18
98 99 4.410400 GAGGGGTGGCCAACGAGG 62.410 72.222 16.31 0.00 41.84 4.63
101 102 3.961414 GGGTGGCCAACGAGGGAA 61.961 66.667 16.31 0.00 38.09 3.97
102 103 2.114411 GGTGGCCAACGAGGGAAA 59.886 61.111 7.24 0.00 38.09 3.13
103 104 1.971695 GGTGGCCAACGAGGGAAAG 60.972 63.158 7.24 0.00 38.09 2.62
104 105 1.072505 GTGGCCAACGAGGGAAAGA 59.927 57.895 7.24 0.00 38.09 2.52
105 106 1.072505 TGGCCAACGAGGGAAAGAC 59.927 57.895 0.61 0.00 38.09 3.01
106 107 2.033194 GGCCAACGAGGGAAAGACG 61.033 63.158 0.00 0.00 38.09 4.18
107 108 1.301479 GCCAACGAGGGAAAGACGT 60.301 57.895 0.00 0.00 41.97 4.34
109 110 1.145803 CCAACGAGGGAAAGACGTTC 58.854 55.000 0.00 0.00 45.95 3.95
110 111 1.539496 CCAACGAGGGAAAGACGTTCA 60.539 52.381 0.00 0.00 45.95 3.18
111 112 2.206750 CAACGAGGGAAAGACGTTCAA 58.793 47.619 0.00 0.00 45.95 2.69
112 113 2.150397 ACGAGGGAAAGACGTTCAAG 57.850 50.000 3.52 0.00 38.06 3.02
113 114 1.411612 ACGAGGGAAAGACGTTCAAGT 59.588 47.619 3.52 0.00 38.06 3.16
114 115 2.159000 ACGAGGGAAAGACGTTCAAGTT 60.159 45.455 3.52 0.00 38.06 2.66
115 116 2.475487 CGAGGGAAAGACGTTCAAGTTC 59.525 50.000 3.52 0.00 38.06 3.01
116 117 3.463944 GAGGGAAAGACGTTCAAGTTCA 58.536 45.455 3.52 0.00 38.06 3.18
117 118 3.875134 GAGGGAAAGACGTTCAAGTTCAA 59.125 43.478 3.52 0.00 38.06 2.69
118 119 3.877508 AGGGAAAGACGTTCAAGTTCAAG 59.122 43.478 3.52 0.00 38.06 3.02
119 120 3.003378 GGGAAAGACGTTCAAGTTCAAGG 59.997 47.826 3.52 0.00 38.06 3.61
120 121 3.003378 GGAAAGACGTTCAAGTTCAAGGG 59.997 47.826 3.52 0.00 38.06 3.95
121 122 2.256117 AGACGTTCAAGTTCAAGGGG 57.744 50.000 0.00 0.00 0.00 4.79
122 123 1.202770 AGACGTTCAAGTTCAAGGGGG 60.203 52.381 0.00 0.00 0.00 5.40
123 124 0.822121 ACGTTCAAGTTCAAGGGGGC 60.822 55.000 0.00 0.00 0.00 5.80
124 125 1.852067 CGTTCAAGTTCAAGGGGGCG 61.852 60.000 0.00 0.00 0.00 6.13
125 126 1.228429 TTCAAGTTCAAGGGGGCGG 60.228 57.895 0.00 0.00 0.00 6.13
126 127 2.002018 TTCAAGTTCAAGGGGGCGGT 62.002 55.000 0.00 0.00 0.00 5.68
127 128 2.115266 AAGTTCAAGGGGGCGGTG 59.885 61.111 0.00 0.00 0.00 4.94
128 129 2.457323 AAGTTCAAGGGGGCGGTGA 61.457 57.895 0.00 0.00 0.00 4.02
129 130 2.002018 AAGTTCAAGGGGGCGGTGAA 62.002 55.000 0.00 0.00 0.00 3.18
130 131 1.971695 GTTCAAGGGGGCGGTGAAG 60.972 63.158 0.00 0.00 32.15 3.02
131 132 3.204467 TTCAAGGGGGCGGTGAAGG 62.204 63.158 0.00 0.00 0.00 3.46
132 133 3.646715 CAAGGGGGCGGTGAAGGA 61.647 66.667 0.00 0.00 0.00 3.36
133 134 3.330720 AAGGGGGCGGTGAAGGAG 61.331 66.667 0.00 0.00 0.00 3.69
139 140 3.787001 GCGGTGAAGGAGGGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
140 141 3.083997 CGGTGAAGGAGGGGGAGG 61.084 72.222 0.00 0.00 0.00 4.30
141 142 2.454941 GGTGAAGGAGGGGGAGGA 59.545 66.667 0.00 0.00 0.00 3.71
142 143 1.004891 GGTGAAGGAGGGGGAGGAT 59.995 63.158 0.00 0.00 0.00 3.24
143 144 0.267960 GGTGAAGGAGGGGGAGGATA 59.732 60.000 0.00 0.00 0.00 2.59
144 145 1.425694 GTGAAGGAGGGGGAGGATAC 58.574 60.000 0.00 0.00 0.00 2.24
158 159 2.351706 GGATACTGTCTCCTCCGAGT 57.648 55.000 5.06 0.00 37.40 4.18
159 160 2.223745 GGATACTGTCTCCTCCGAGTC 58.776 57.143 5.06 0.00 37.40 3.36
160 161 1.868498 GATACTGTCTCCTCCGAGTCG 59.132 57.143 5.29 5.29 37.40 4.18
161 162 0.612229 TACTGTCTCCTCCGAGTCGT 59.388 55.000 12.31 0.00 37.40 4.34
162 163 0.250814 ACTGTCTCCTCCGAGTCGTT 60.251 55.000 12.31 0.00 37.40 3.85
163 164 0.169230 CTGTCTCCTCCGAGTCGTTG 59.831 60.000 12.31 3.44 37.40 4.10
164 165 1.241990 TGTCTCCTCCGAGTCGTTGG 61.242 60.000 12.31 12.71 37.40 3.77
165 166 1.074423 TCTCCTCCGAGTCGTTGGT 59.926 57.895 12.31 0.00 37.40 3.67
166 167 0.959372 TCTCCTCCGAGTCGTTGGTC 60.959 60.000 12.31 0.00 37.40 4.02
167 168 2.178521 CCTCCGAGTCGTTGGTCG 59.821 66.667 12.31 0.00 41.41 4.79
168 169 2.330372 CCTCCGAGTCGTTGGTCGA 61.330 63.158 12.31 0.00 46.83 4.20
175 176 2.258591 TCGTTGGTCGAGCAGCTC 59.741 61.111 25.43 12.94 44.01 4.09
176 177 2.259818 CGTTGGTCGAGCAGCTCT 59.740 61.111 25.43 0.00 42.86 4.09
177 178 1.373497 CGTTGGTCGAGCAGCTCTT 60.373 57.895 25.43 0.00 42.86 2.85
178 179 0.946221 CGTTGGTCGAGCAGCTCTTT 60.946 55.000 25.43 0.00 42.86 2.52
179 180 1.668919 CGTTGGTCGAGCAGCTCTTTA 60.669 52.381 25.43 4.43 42.86 1.85
180 181 2.413837 GTTGGTCGAGCAGCTCTTTAA 58.586 47.619 22.09 7.39 0.00 1.52
181 182 2.806244 GTTGGTCGAGCAGCTCTTTAAA 59.194 45.455 22.09 7.05 0.00 1.52
182 183 2.413837 TGGTCGAGCAGCTCTTTAAAC 58.586 47.619 20.39 9.83 0.00 2.01
183 184 2.224185 TGGTCGAGCAGCTCTTTAAACA 60.224 45.455 20.39 8.92 0.00 2.83
184 185 2.413453 GGTCGAGCAGCTCTTTAAACAG 59.587 50.000 20.39 2.19 0.00 3.16
185 186 3.318017 GTCGAGCAGCTCTTTAAACAGA 58.682 45.455 20.39 4.65 0.00 3.41
186 187 3.122111 GTCGAGCAGCTCTTTAAACAGAC 59.878 47.826 20.39 12.89 0.00 3.51
187 188 3.059884 CGAGCAGCTCTTTAAACAGACA 58.940 45.455 20.39 0.00 0.00 3.41
188 189 3.494626 CGAGCAGCTCTTTAAACAGACAA 59.505 43.478 20.39 0.00 0.00 3.18
189 190 4.024893 CGAGCAGCTCTTTAAACAGACAAA 60.025 41.667 20.39 0.00 0.00 2.83
190 191 5.504010 CGAGCAGCTCTTTAAACAGACAAAA 60.504 40.000 20.39 0.00 0.00 2.44
191 192 5.582550 AGCAGCTCTTTAAACAGACAAAAC 58.417 37.500 0.00 0.00 0.00 2.43
192 193 5.125417 AGCAGCTCTTTAAACAGACAAAACA 59.875 36.000 0.00 0.00 0.00 2.83
193 194 5.804979 GCAGCTCTTTAAACAGACAAAACAA 59.195 36.000 0.00 0.00 0.00 2.83
194 195 6.310224 GCAGCTCTTTAAACAGACAAAACAAA 59.690 34.615 0.00 0.00 0.00 2.83
195 196 7.148656 GCAGCTCTTTAAACAGACAAAACAAAA 60.149 33.333 0.00 0.00 0.00 2.44
196 197 8.872845 CAGCTCTTTAAACAGACAAAACAAAAT 58.127 29.630 0.00 0.00 0.00 1.82
203 204 9.535878 TTAAACAGACAAAACAAAATACCATCC 57.464 29.630 0.00 0.00 0.00 3.51
204 205 6.723298 ACAGACAAAACAAAATACCATCCA 57.277 33.333 0.00 0.00 0.00 3.41
205 206 7.301868 ACAGACAAAACAAAATACCATCCAT 57.698 32.000 0.00 0.00 0.00 3.41
206 207 7.378181 ACAGACAAAACAAAATACCATCCATC 58.622 34.615 0.00 0.00 0.00 3.51
207 208 7.233348 ACAGACAAAACAAAATACCATCCATCT 59.767 33.333 0.00 0.00 0.00 2.90
208 209 7.543172 CAGACAAAACAAAATACCATCCATCTG 59.457 37.037 0.00 0.00 0.00 2.90
209 210 7.451255 AGACAAAACAAAATACCATCCATCTGA 59.549 33.333 0.00 0.00 0.00 3.27
210 211 8.137745 ACAAAACAAAATACCATCCATCTGAT 57.862 30.769 0.00 0.00 0.00 2.90
211 212 8.596293 ACAAAACAAAATACCATCCATCTGATT 58.404 29.630 0.00 0.00 0.00 2.57
212 213 8.875803 CAAAACAAAATACCATCCATCTGATTG 58.124 33.333 0.00 0.00 0.00 2.67
213 214 7.959658 AACAAAATACCATCCATCTGATTGA 57.040 32.000 0.00 0.00 0.00 2.57
214 215 7.578310 ACAAAATACCATCCATCTGATTGAG 57.422 36.000 0.00 0.00 0.00 3.02
215 216 7.121382 ACAAAATACCATCCATCTGATTGAGT 58.879 34.615 0.00 0.00 0.00 3.41
216 217 8.274322 ACAAAATACCATCCATCTGATTGAGTA 58.726 33.333 0.00 0.00 0.00 2.59
217 218 9.293404 CAAAATACCATCCATCTGATTGAGTAT 57.707 33.333 0.00 0.00 0.00 2.12
218 219 8.859236 AAATACCATCCATCTGATTGAGTATG 57.141 34.615 0.00 0.00 0.00 2.39
219 220 7.803487 ATACCATCCATCTGATTGAGTATGA 57.197 36.000 0.00 0.00 0.00 2.15
220 221 6.699242 ACCATCCATCTGATTGAGTATGAT 57.301 37.500 0.00 0.00 0.00 2.45
221 222 6.709281 ACCATCCATCTGATTGAGTATGATC 58.291 40.000 0.00 0.00 0.00 2.92
222 223 6.114089 CCATCCATCTGATTGAGTATGATCC 58.886 44.000 0.00 0.00 0.00 3.36
223 224 5.752036 TCCATCTGATTGAGTATGATCCC 57.248 43.478 0.00 0.00 0.00 3.85
224 225 4.221482 TCCATCTGATTGAGTATGATCCCG 59.779 45.833 0.00 0.00 0.00 5.14
225 226 4.221482 CCATCTGATTGAGTATGATCCCGA 59.779 45.833 0.00 0.00 0.00 5.14
226 227 5.105023 CCATCTGATTGAGTATGATCCCGAT 60.105 44.000 0.00 0.00 0.00 4.18
227 228 6.404708 CATCTGATTGAGTATGATCCCGATT 58.595 40.000 0.00 0.00 0.00 3.34
228 229 6.425210 TCTGATTGAGTATGATCCCGATTT 57.575 37.500 0.00 0.00 0.00 2.17
229 230 6.830912 TCTGATTGAGTATGATCCCGATTTT 58.169 36.000 0.00 0.00 0.00 1.82
230 231 7.962441 TCTGATTGAGTATGATCCCGATTTTA 58.038 34.615 0.00 0.00 0.00 1.52
231 232 8.597167 TCTGATTGAGTATGATCCCGATTTTAT 58.403 33.333 0.00 0.00 0.00 1.40
232 233 9.224267 CTGATTGAGTATGATCCCGATTTTATT 57.776 33.333 0.00 0.00 0.00 1.40
233 234 9.573166 TGATTGAGTATGATCCCGATTTTATTT 57.427 29.630 0.00 0.00 0.00 1.40
235 236 9.799106 ATTGAGTATGATCCCGATTTTATTTCT 57.201 29.630 0.00 0.00 0.00 2.52
236 237 8.833231 TGAGTATGATCCCGATTTTATTTCTC 57.167 34.615 0.00 0.00 0.00 2.87
237 238 8.428852 TGAGTATGATCCCGATTTTATTTCTCA 58.571 33.333 0.00 0.00 0.00 3.27
238 239 8.839310 AGTATGATCCCGATTTTATTTCTCAG 57.161 34.615 0.00 0.00 0.00 3.35
239 240 6.566197 ATGATCCCGATTTTATTTCTCAGC 57.434 37.500 0.00 0.00 0.00 4.26
240 241 5.684704 TGATCCCGATTTTATTTCTCAGCT 58.315 37.500 0.00 0.00 0.00 4.24
241 242 6.122277 TGATCCCGATTTTATTTCTCAGCTT 58.878 36.000 0.00 0.00 0.00 3.74
242 243 6.260936 TGATCCCGATTTTATTTCTCAGCTTC 59.739 38.462 0.00 0.00 0.00 3.86
243 244 5.745227 TCCCGATTTTATTTCTCAGCTTCT 58.255 37.500 0.00 0.00 0.00 2.85
244 245 6.180472 TCCCGATTTTATTTCTCAGCTTCTT 58.820 36.000 0.00 0.00 0.00 2.52
245 246 7.335627 TCCCGATTTTATTTCTCAGCTTCTTA 58.664 34.615 0.00 0.00 0.00 2.10
246 247 7.993183 TCCCGATTTTATTTCTCAGCTTCTTAT 59.007 33.333 0.00 0.00 0.00 1.73
247 248 9.273016 CCCGATTTTATTTCTCAGCTTCTTATA 57.727 33.333 0.00 0.00 0.00 0.98
291 292 9.995003 TTGGAGTTTTATCAATAATTTGCTTGT 57.005 25.926 0.00 0.00 32.61 3.16
292 293 9.421806 TGGAGTTTTATCAATAATTTGCTTGTG 57.578 29.630 0.00 0.00 32.61 3.33
293 294 9.423061 GGAGTTTTATCAATAATTTGCTTGTGT 57.577 29.630 0.00 0.00 32.61 3.72
298 299 9.853555 TTTATCAATAATTTGCTTGTGTAGGTG 57.146 29.630 0.00 0.00 32.61 4.00
299 300 6.266168 TCAATAATTTGCTTGTGTAGGTGG 57.734 37.500 0.00 0.00 32.61 4.61
300 301 5.184864 TCAATAATTTGCTTGTGTAGGTGGG 59.815 40.000 0.00 0.00 32.61 4.61
301 302 1.923356 ATTTGCTTGTGTAGGTGGGG 58.077 50.000 0.00 0.00 0.00 4.96
302 303 0.847373 TTTGCTTGTGTAGGTGGGGA 59.153 50.000 0.00 0.00 0.00 4.81
303 304 0.109723 TTGCTTGTGTAGGTGGGGAC 59.890 55.000 0.00 0.00 0.00 4.46
318 319 2.327200 GGGACCTGGTATTTTCGGAG 57.673 55.000 0.00 0.00 0.00 4.63
319 320 1.558294 GGGACCTGGTATTTTCGGAGT 59.442 52.381 0.00 0.00 0.00 3.85
320 321 2.419713 GGGACCTGGTATTTTCGGAGTC 60.420 54.545 0.00 0.00 0.00 3.36
321 322 2.419713 GGACCTGGTATTTTCGGAGTCC 60.420 54.545 0.00 0.00 36.12 3.85
322 323 2.500504 GACCTGGTATTTTCGGAGTCCT 59.499 50.000 7.77 0.00 0.00 3.85
323 324 2.910977 ACCTGGTATTTTCGGAGTCCTT 59.089 45.455 7.77 0.00 0.00 3.36
324 325 4.098894 ACCTGGTATTTTCGGAGTCCTTA 58.901 43.478 7.77 0.00 0.00 2.69
325 326 4.720273 ACCTGGTATTTTCGGAGTCCTTAT 59.280 41.667 7.77 0.00 0.00 1.73
326 327 5.057149 CCTGGTATTTTCGGAGTCCTTATG 58.943 45.833 7.77 0.00 0.00 1.90
327 328 4.448210 TGGTATTTTCGGAGTCCTTATGC 58.552 43.478 7.77 0.00 0.00 3.14
328 329 3.493503 GGTATTTTCGGAGTCCTTATGCG 59.506 47.826 7.77 0.00 0.00 4.73
329 330 3.536956 ATTTTCGGAGTCCTTATGCGA 57.463 42.857 7.77 0.00 38.81 5.10
330 331 2.579207 TTTCGGAGTCCTTATGCGAG 57.421 50.000 7.77 0.00 41.57 5.03
331 332 0.744874 TTCGGAGTCCTTATGCGAGG 59.255 55.000 7.77 0.00 41.57 4.63
332 333 0.106868 TCGGAGTCCTTATGCGAGGA 60.107 55.000 7.77 0.00 43.47 3.71
391 393 7.169645 TCGGCCTATGTGTATTATTTACGTTTC 59.830 37.037 0.00 0.00 0.00 2.78
394 396 9.859692 GCCTATGTGTATTATTTACGTTTCTTC 57.140 33.333 0.00 0.00 0.00 2.87
426 428 6.484308 ACATTGGCCTATACGTACCAAAATAC 59.516 38.462 16.56 0.00 44.83 1.89
427 429 5.874897 TGGCCTATACGTACCAAAATACT 57.125 39.130 3.32 0.00 0.00 2.12
439 441 5.607119 ACCAAAATACTAAGTCTTGTGCG 57.393 39.130 0.00 0.00 0.00 5.34
446 448 3.537580 ACTAAGTCTTGTGCGAACCAAA 58.462 40.909 0.00 0.00 0.00 3.28
449 451 2.365582 AGTCTTGTGCGAACCAAACTT 58.634 42.857 0.00 0.00 0.00 2.66
464 466 3.197983 CCAAACTTTGGTTGGGTGGTTAA 59.802 43.478 11.92 0.00 45.93 2.01
467 469 2.432874 ACTTTGGTTGGGTGGTTAAAGC 59.567 45.455 0.00 0.00 0.00 3.51
468 470 2.160721 TTGGTTGGGTGGTTAAAGCA 57.839 45.000 0.00 0.00 0.00 3.91
470 472 2.683768 TGGTTGGGTGGTTAAAGCAAT 58.316 42.857 0.00 0.00 0.00 3.56
479 481 5.298527 GGGTGGTTAAAGCAATAGTGGTATC 59.701 44.000 0.00 0.00 34.25 2.24
493 495 0.691078 GGTATCTCCAGCCCACCAGA 60.691 60.000 0.00 0.00 35.97 3.86
497 499 1.194781 TCTCCAGCCCACCAGAGTTC 61.195 60.000 0.00 0.00 0.00 3.01
502 504 0.846693 AGCCCACCAGAGTTCAAGTT 59.153 50.000 0.00 0.00 0.00 2.66
508 510 3.750130 CCACCAGAGTTCAAGTTCTGATG 59.250 47.826 3.22 0.00 42.67 3.07
520 522 5.007039 TCAAGTTCTGATGCTCGCATTATTC 59.993 40.000 5.79 0.00 36.70 1.75
544 639 6.830324 TCCTGGATTTATTTCAAGGATGAGTG 59.170 38.462 0.00 0.00 40.33 3.51
551 646 3.610040 TTCAAGGATGAGTGTATGCGT 57.390 42.857 0.00 0.00 36.78 5.24
558 653 3.490896 GGATGAGTGTATGCGTGTATGTG 59.509 47.826 0.00 0.00 0.00 3.21
563 658 2.029244 GTGTATGCGTGTATGTGTGAGC 59.971 50.000 0.00 0.00 0.00 4.26
580 675 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
581 676 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
582 677 1.493311 GCTTGCGTCTGTACTGTGC 59.507 57.895 10.94 10.94 0.00 4.57
583 678 0.946221 GCTTGCGTCTGTACTGTGCT 60.946 55.000 16.07 0.00 0.00 4.40
587 682 3.100658 TGCGTCTGTACTGTGCTAAAA 57.899 42.857 16.07 0.08 0.00 1.52
588 683 3.459145 TGCGTCTGTACTGTGCTAAAAA 58.541 40.909 16.07 0.00 0.00 1.94
616 711 6.740110 AGTAAGTCTTGTATCCTGAATAGCG 58.260 40.000 0.00 0.00 0.00 4.26
661 761 3.118555 TGACATAATCCGTACCCAACTGG 60.119 47.826 0.00 0.00 41.37 4.00
674 774 1.901159 CCAACTGGATGCCCAAAATCA 59.099 47.619 0.00 0.00 42.98 2.57
736 836 4.016113 AGAAACGAACAGAAAACTGCAC 57.984 40.909 0.00 0.00 0.00 4.57
765 865 1.327764 GATTGCGCGCCTATAATAGCC 59.672 52.381 30.77 5.99 0.00 3.93
787 887 1.371558 GGCTGAAGTGGACGGACTT 59.628 57.895 0.00 0.00 38.94 3.01
880 980 2.684735 GAGACCGTCTCCTCCCCT 59.315 66.667 16.58 0.00 37.55 4.79
906 1006 2.045926 CGCCCCCTGAACCTGAAG 60.046 66.667 0.00 0.00 0.00 3.02
907 1007 2.592993 CGCCCCCTGAACCTGAAGA 61.593 63.158 0.00 0.00 0.00 2.87
908 1008 1.767692 GCCCCCTGAACCTGAAGAA 59.232 57.895 0.00 0.00 0.00 2.52
910 1010 0.321653 CCCCCTGAACCTGAAGAACG 60.322 60.000 0.00 0.00 0.00 3.95
912 1012 1.608283 CCCCTGAACCTGAAGAACGTC 60.608 57.143 0.00 0.00 0.00 4.34
913 1013 1.344763 CCCTGAACCTGAAGAACGTCT 59.655 52.381 0.00 0.00 0.00 4.18
914 1014 2.224305 CCCTGAACCTGAAGAACGTCTT 60.224 50.000 0.00 0.00 39.87 3.01
915 1015 3.467803 CCTGAACCTGAAGAACGTCTTT 58.532 45.455 0.00 0.00 36.73 2.52
916 1016 3.495001 CCTGAACCTGAAGAACGTCTTTC 59.505 47.826 0.00 0.00 36.73 2.62
918 1018 3.134081 TGAACCTGAAGAACGTCTTTCCT 59.866 43.478 8.87 0.00 36.73 3.36
926 1037 4.674281 AGAACGTCTTTCCTTCTGAAGT 57.326 40.909 15.72 0.00 34.32 3.01
1374 1490 3.124636 CCTTACATTTCCACGTTTCGAGG 59.875 47.826 0.00 0.00 38.87 4.63
1386 1502 2.803956 CGTTTCGAGGTTTGGTACACAT 59.196 45.455 0.00 0.00 39.29 3.21
1526 1656 3.007182 AGCTTTTGTATGCATGCCTTTGT 59.993 39.130 16.68 0.00 0.00 2.83
1556 1686 3.627577 TGTTTTCTGCTTCAGTTGGACTC 59.372 43.478 0.00 0.00 32.61 3.36
1585 1722 2.300152 TCACTTAGTTCAGCTCAGTGGG 59.700 50.000 3.29 0.00 45.07 4.61
1593 1730 1.152694 AGCTCAGTGGGCTGCAAAA 60.153 52.632 19.04 0.00 42.29 2.44
1599 1736 1.130777 AGTGGGCTGCAAAACCAATT 58.869 45.000 0.50 0.00 35.77 2.32
1601 1738 2.092484 AGTGGGCTGCAAAACCAATTTT 60.092 40.909 0.50 0.00 38.61 1.82
1642 1779 6.210185 GGGAAGATGGATTTTTAGATGATGGG 59.790 42.308 0.00 0.00 0.00 4.00
1649 1786 8.434589 TGGATTTTTAGATGATGGGAACTTTT 57.565 30.769 0.00 0.00 0.00 2.27
1772 1909 0.818040 AGGACCACTTGTTTGGCGAC 60.818 55.000 0.00 0.00 40.77 5.19
1818 1959 2.249413 ATCTCCAAGTCTGCTGGCCG 62.249 60.000 0.00 0.00 0.00 6.13
1824 1965 1.799258 AAGTCTGCTGGCCGCTTTTG 61.799 55.000 18.14 8.05 40.11 2.44
1833 1974 0.884259 GGCCGCTTTTGGTTTGCAAT 60.884 50.000 0.00 0.00 0.00 3.56
1859 2000 8.579850 TTGGAACAGAGCATTTAGTTGATAAT 57.420 30.769 0.00 0.00 42.39 1.28
2010 2162 7.418337 AGGTATTCTTTTGTTCTTTGGTGTT 57.582 32.000 0.00 0.00 0.00 3.32
2340 2492 2.348998 GTGGCACTGGTCTCAGGG 59.651 66.667 11.13 0.00 46.85 4.45
2403 2555 3.243704 TGCTTTGTGGTTACTGAAATGCC 60.244 43.478 0.00 0.00 0.00 4.40
2554 2706 5.178096 TGTGCTGAAATTCTCCATTAGGA 57.822 39.130 0.00 0.00 43.21 2.94
2648 2800 3.201290 CCAATTCCGGTCTCAGAGAATG 58.799 50.000 0.20 0.00 0.00 2.67
2739 2891 7.316640 AGATCTATAATTGCTCATCGTACCAC 58.683 38.462 0.00 0.00 0.00 4.16
2896 3048 3.752665 AGCATAAGATTCTGCCATGGAG 58.247 45.455 18.40 10.38 39.22 3.86
2985 3137 7.908827 ATGATTGAACTAGCATCTGATCATC 57.091 36.000 0.00 0.00 31.38 2.92
2990 3142 5.010820 TGAACTAGCATCTGATCATCTCTGG 59.989 44.000 0.00 0.00 0.00 3.86
3029 3182 7.640597 AATTCCCCTTCTAATTTTAGGAACG 57.359 36.000 0.00 0.00 0.00 3.95
3033 3186 5.417894 CCCCTTCTAATTTTAGGAACGCTTT 59.582 40.000 0.00 0.00 0.00 3.51
3051 3204 4.554134 CGCTTTGATGTGATCCTGCTATTG 60.554 45.833 0.00 0.00 0.00 1.90
3095 3248 7.859325 AAACACTAACAATGACTACAAGTGT 57.141 32.000 0.00 0.00 41.68 3.55
3100 3253 8.002107 CACTAACAATGACTACAAGTGTTTACG 58.998 37.037 0.00 0.00 38.42 3.18
3169 3323 5.479375 AGTGTTACATACTACCATATCGGGG 59.521 44.000 0.00 0.00 40.22 5.73
3189 3343 1.202940 GGGACTGGAGGAAGCACTTTT 60.203 52.381 0.00 0.00 0.00 2.27
3320 3477 3.330267 GCACCACAACACAAAGGAAAAA 58.670 40.909 0.00 0.00 0.00 1.94
3352 3509 0.392998 AAGAGCAATACCCACAGCCG 60.393 55.000 0.00 0.00 0.00 5.52
3910 4067 6.612306 AGCCAGTTAAATCGATTTTTCTGTC 58.388 36.000 30.27 25.05 32.62 3.51
4131 4288 9.683069 AGAACTTGTTTCATCATAATTGTGTTC 57.317 29.630 1.86 0.00 36.57 3.18
4133 4290 8.181904 ACTTGTTTCATCATAATTGTGTTCCT 57.818 30.769 1.86 0.00 0.00 3.36
4144 4301 8.530311 TCATAATTGTGTTCCTTAACATGCAAT 58.470 29.630 1.86 0.00 46.84 3.56
4218 4375 6.761714 GCTGTGCACCAGTACTTATTTATACT 59.238 38.462 15.69 0.00 43.55 2.12
4291 4451 8.867112 GTTTCTGACGGATAACATAAGATACA 57.133 34.615 0.00 0.00 0.00 2.29
4361 4526 4.689071 TGTATATCGAACAATCAGCGGTT 58.311 39.130 0.00 0.00 0.00 4.44
4440 4605 1.065709 TGGCGTCTTAAACCCCTGATC 60.066 52.381 0.00 0.00 0.00 2.92
4533 4701 9.761504 ATGAGATACAAGTAATCATGTTCAGAG 57.238 33.333 9.28 0.00 29.76 3.35
4685 4853 8.800370 TTGACCATATACTTCTTGTGCAAATA 57.200 30.769 0.00 0.00 0.00 1.40
4865 5033 7.386573 TGTCGTTCTTTATGTGCTTTAGAATGA 59.613 33.333 0.00 0.00 38.09 2.57
4866 5034 8.391106 GTCGTTCTTTATGTGCTTTAGAATGAT 58.609 33.333 0.00 0.00 40.76 2.45
4971 5139 6.363473 GTGAGTGTGCAACTAATCTTTACAC 58.637 40.000 0.00 0.00 40.07 2.90
5020 5188 5.649831 AGATTGAATAACACCTGCTTTCCTC 59.350 40.000 0.00 0.00 0.00 3.71
5168 5336 8.736742 CATGAACATGTCATATTTTTACGCTTC 58.263 33.333 0.00 0.00 45.69 3.86
5189 5357 6.461648 GCTTCTATGGCTACATACAGAAGTGA 60.462 42.308 15.88 0.00 44.38 3.41
5190 5358 7.418337 TTCTATGGCTACATACAGAAGTGAA 57.582 36.000 0.00 0.00 38.53 3.18
5301 5469 6.167685 TGTTGTGTACGCTAGTCCATATTTT 58.832 36.000 8.10 0.00 0.00 1.82
5434 5602 2.094182 TCTCAGCGTGTTGGAAGGTATC 60.094 50.000 0.00 0.00 0.00 2.24
5435 5603 1.621317 TCAGCGTGTTGGAAGGTATCA 59.379 47.619 0.00 0.00 0.00 2.15
5436 5604 2.236146 TCAGCGTGTTGGAAGGTATCAT 59.764 45.455 0.00 0.00 0.00 2.45
5500 5670 7.812648 TGTTTCGAAGACCCAATAGTAATTTG 58.187 34.615 0.00 0.00 34.32 2.32
5648 5818 5.292834 CACTCGTTGCTCATCAAGACATTAT 59.707 40.000 0.00 0.00 34.91 1.28
5655 5825 6.114767 TGCTCATCAAGACATTATTGCACTA 58.885 36.000 0.00 0.00 0.00 2.74
5730 5900 6.006449 GGACTATGCAGATTATGGACCATTT 58.994 40.000 13.40 0.29 28.84 2.32
5731 5901 6.072286 GGACTATGCAGATTATGGACCATTTG 60.072 42.308 13.40 7.79 28.84 2.32
5755 5925 2.106683 CCCCCATTTCTGTCGACGC 61.107 63.158 11.62 0.00 0.00 5.19
5833 6003 2.507471 CCCTTTCCACCAAGAGCTCTAT 59.493 50.000 18.59 4.56 0.00 1.98
5866 6036 2.328099 GCAGGCGTTGAACCAGGAG 61.328 63.158 0.00 0.00 0.00 3.69
5920 6090 1.686325 CCGACCAAGACCCCGATGAT 61.686 60.000 0.00 0.00 0.00 2.45
6008 6178 2.679336 GGCGACCATAAATAACGGTGTT 59.321 45.455 0.00 0.00 31.63 3.32
6028 6202 0.458543 CGTGTAAGATGTCAGCGGCT 60.459 55.000 0.00 0.00 0.00 5.52
6035 6209 3.848301 ATGTCAGCGGCTTGGCACA 62.848 57.895 0.00 1.32 35.17 4.57
6122 6296 1.686355 CTGCTGTTGTTTGTGGGGTA 58.314 50.000 0.00 0.00 0.00 3.69
6254 6428 6.718522 ATGTCCTCTAAGCTAGGAGTAAAC 57.281 41.667 3.83 5.51 43.81 2.01
6343 6517 4.365514 TCTTGACCTTTGCCATCTGTTA 57.634 40.909 0.00 0.00 0.00 2.41
6355 6529 1.812571 CATCTGTTACCACTTGCCACC 59.187 52.381 0.00 0.00 0.00 4.61
6459 6638 6.892658 TGTTGCAACTTACATAGGACAAAT 57.107 33.333 28.61 0.00 0.00 2.32
6537 6716 1.608055 CAGTCCACTGCAATTCCACA 58.392 50.000 0.00 0.00 37.15 4.17
6547 6726 2.093921 TGCAATTCCACAGCCATTGATG 60.094 45.455 0.00 0.00 30.66 3.07
6742 6921 2.253758 GCCTGACGAACTGCAGCAA 61.254 57.895 15.27 0.00 0.00 3.91
6749 6928 0.940126 CGAACTGCAGCAAGTTGAGT 59.060 50.000 15.27 0.00 40.48 3.41
6845 7024 0.747852 GCCCGGAGTAGAAGAGGAAG 59.252 60.000 0.73 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.810870 CTTAGGGAGTAATATAGGTCTAAGTGT 57.189 37.037 0.00 0.00 32.23 3.55
18 19 8.741841 GCTTAGGGAGTAATATAGGTCTAAGTG 58.258 40.741 0.00 0.00 36.51 3.16
19 20 7.894897 GGCTTAGGGAGTAATATAGGTCTAAGT 59.105 40.741 0.00 0.00 36.51 2.24
20 21 7.067251 CGGCTTAGGGAGTAATATAGGTCTAAG 59.933 44.444 0.00 0.00 36.93 2.18
21 22 6.888632 CGGCTTAGGGAGTAATATAGGTCTAA 59.111 42.308 0.00 0.00 0.00 2.10
22 23 6.421485 CGGCTTAGGGAGTAATATAGGTCTA 58.579 44.000 0.00 0.00 0.00 2.59
23 24 5.262804 CGGCTTAGGGAGTAATATAGGTCT 58.737 45.833 0.00 0.00 0.00 3.85
24 25 4.401837 CCGGCTTAGGGAGTAATATAGGTC 59.598 50.000 0.00 0.00 0.00 3.85
25 26 4.045079 TCCGGCTTAGGGAGTAATATAGGT 59.955 45.833 0.00 0.00 0.00 3.08
26 27 4.607239 TCCGGCTTAGGGAGTAATATAGG 58.393 47.826 0.00 0.00 0.00 2.57
27 28 5.838531 CTCCGGCTTAGGGAGTAATATAG 57.161 47.826 0.00 0.00 44.92 1.31
48 49 2.534042 TAGTGTCCTAGAGCCAAGCT 57.466 50.000 0.00 0.00 43.88 3.74
49 50 2.761208 TCTTAGTGTCCTAGAGCCAAGC 59.239 50.000 0.00 0.00 0.00 4.01
50 51 4.739137 GCATCTTAGTGTCCTAGAGCCAAG 60.739 50.000 0.00 0.00 0.00 3.61
51 52 3.133003 GCATCTTAGTGTCCTAGAGCCAA 59.867 47.826 0.00 0.00 0.00 4.52
52 53 2.695666 GCATCTTAGTGTCCTAGAGCCA 59.304 50.000 0.00 0.00 0.00 4.75
53 54 2.287909 CGCATCTTAGTGTCCTAGAGCC 60.288 54.545 0.00 0.00 0.00 4.70
54 55 2.287909 CCGCATCTTAGTGTCCTAGAGC 60.288 54.545 0.00 0.00 0.00 4.09
55 56 3.215151 TCCGCATCTTAGTGTCCTAGAG 58.785 50.000 0.00 0.00 0.00 2.43
56 57 3.292492 TCCGCATCTTAGTGTCCTAGA 57.708 47.619 0.00 0.00 0.00 2.43
57 58 4.038042 TGAATCCGCATCTTAGTGTCCTAG 59.962 45.833 0.00 0.00 0.00 3.02
58 59 3.958147 TGAATCCGCATCTTAGTGTCCTA 59.042 43.478 0.00 0.00 0.00 2.94
59 60 2.766263 TGAATCCGCATCTTAGTGTCCT 59.234 45.455 0.00 0.00 0.00 3.85
60 61 3.126831 CTGAATCCGCATCTTAGTGTCC 58.873 50.000 0.00 0.00 0.00 4.02
61 62 4.046938 TCTGAATCCGCATCTTAGTGTC 57.953 45.455 0.00 0.00 0.00 3.67
62 63 3.181471 CCTCTGAATCCGCATCTTAGTGT 60.181 47.826 0.00 0.00 0.00 3.55
63 64 3.388308 CCTCTGAATCCGCATCTTAGTG 58.612 50.000 0.00 0.00 0.00 2.74
64 65 2.366916 CCCTCTGAATCCGCATCTTAGT 59.633 50.000 0.00 0.00 0.00 2.24
65 66 2.289320 CCCCTCTGAATCCGCATCTTAG 60.289 54.545 0.00 0.00 0.00 2.18
66 67 1.694150 CCCCTCTGAATCCGCATCTTA 59.306 52.381 0.00 0.00 0.00 2.10
67 68 0.471617 CCCCTCTGAATCCGCATCTT 59.528 55.000 0.00 0.00 0.00 2.40
68 69 0.692419 ACCCCTCTGAATCCGCATCT 60.692 55.000 0.00 0.00 0.00 2.90
69 70 0.533755 CACCCCTCTGAATCCGCATC 60.534 60.000 0.00 0.00 0.00 3.91
70 71 1.528824 CACCCCTCTGAATCCGCAT 59.471 57.895 0.00 0.00 0.00 4.73
71 72 2.669133 CCACCCCTCTGAATCCGCA 61.669 63.158 0.00 0.00 0.00 5.69
72 73 2.190578 CCACCCCTCTGAATCCGC 59.809 66.667 0.00 0.00 0.00 5.54
73 74 2.190578 GCCACCCCTCTGAATCCG 59.809 66.667 0.00 0.00 0.00 4.18
74 75 1.863155 TTGGCCACCCCTCTGAATCC 61.863 60.000 3.88 0.00 0.00 3.01
75 76 0.681243 GTTGGCCACCCCTCTGAATC 60.681 60.000 3.88 0.00 0.00 2.52
76 77 1.384191 GTTGGCCACCCCTCTGAAT 59.616 57.895 3.88 0.00 0.00 2.57
77 78 2.843545 GTTGGCCACCCCTCTGAA 59.156 61.111 3.88 0.00 0.00 3.02
78 79 3.636231 CGTTGGCCACCCCTCTGA 61.636 66.667 3.88 0.00 0.00 3.27
79 80 3.612247 CTCGTTGGCCACCCCTCTG 62.612 68.421 3.88 0.00 0.00 3.35
80 81 3.322466 CTCGTTGGCCACCCCTCT 61.322 66.667 3.88 0.00 0.00 3.69
81 82 4.410400 CCTCGTTGGCCACCCCTC 62.410 72.222 3.88 0.00 0.00 4.30
84 85 3.501040 TTTCCCTCGTTGGCCACCC 62.501 63.158 3.88 0.00 0.00 4.61
85 86 1.971695 CTTTCCCTCGTTGGCCACC 60.972 63.158 3.88 0.00 0.00 4.61
86 87 1.072505 TCTTTCCCTCGTTGGCCAC 59.927 57.895 3.88 0.00 0.00 5.01
87 88 1.072505 GTCTTTCCCTCGTTGGCCA 59.927 57.895 0.00 0.00 0.00 5.36
88 89 2.033194 CGTCTTTCCCTCGTTGGCC 61.033 63.158 0.00 0.00 0.00 5.36
89 90 0.883370 AACGTCTTTCCCTCGTTGGC 60.883 55.000 0.00 0.00 44.18 4.52
90 91 1.145803 GAACGTCTTTCCCTCGTTGG 58.854 55.000 6.89 0.00 45.48 3.77
91 92 1.860676 TGAACGTCTTTCCCTCGTTG 58.139 50.000 6.89 0.00 45.48 4.10
93 94 1.411612 ACTTGAACGTCTTTCCCTCGT 59.588 47.619 0.00 0.00 39.49 4.18
94 95 2.150397 ACTTGAACGTCTTTCCCTCG 57.850 50.000 0.00 0.00 32.58 4.63
95 96 3.463944 TGAACTTGAACGTCTTTCCCTC 58.536 45.455 0.00 0.00 32.58 4.30
96 97 3.553828 TGAACTTGAACGTCTTTCCCT 57.446 42.857 0.00 0.00 32.58 4.20
97 98 3.003378 CCTTGAACTTGAACGTCTTTCCC 59.997 47.826 0.00 0.00 32.58 3.97
98 99 3.003378 CCCTTGAACTTGAACGTCTTTCC 59.997 47.826 0.00 0.00 32.58 3.13
99 100 3.003378 CCCCTTGAACTTGAACGTCTTTC 59.997 47.826 0.00 0.00 34.41 2.62
100 101 2.949644 CCCCTTGAACTTGAACGTCTTT 59.050 45.455 0.00 0.00 0.00 2.52
101 102 2.572290 CCCCTTGAACTTGAACGTCTT 58.428 47.619 0.00 0.00 0.00 3.01
102 103 1.202770 CCCCCTTGAACTTGAACGTCT 60.203 52.381 0.00 0.00 0.00 4.18
103 104 1.235724 CCCCCTTGAACTTGAACGTC 58.764 55.000 0.00 0.00 0.00 4.34
104 105 0.822121 GCCCCCTTGAACTTGAACGT 60.822 55.000 0.00 0.00 0.00 3.99
105 106 1.852067 CGCCCCCTTGAACTTGAACG 61.852 60.000 0.00 0.00 0.00 3.95
106 107 1.524008 CCGCCCCCTTGAACTTGAAC 61.524 60.000 0.00 0.00 0.00 3.18
107 108 1.228429 CCGCCCCCTTGAACTTGAA 60.228 57.895 0.00 0.00 0.00 2.69
108 109 2.434331 CCGCCCCCTTGAACTTGA 59.566 61.111 0.00 0.00 0.00 3.02
109 110 2.115266 ACCGCCCCCTTGAACTTG 59.885 61.111 0.00 0.00 0.00 3.16
110 111 2.002018 TTCACCGCCCCCTTGAACTT 62.002 55.000 0.00 0.00 0.00 2.66
111 112 2.411765 CTTCACCGCCCCCTTGAACT 62.412 60.000 0.00 0.00 0.00 3.01
112 113 1.971695 CTTCACCGCCCCCTTGAAC 60.972 63.158 0.00 0.00 0.00 3.18
113 114 2.434331 CTTCACCGCCCCCTTGAA 59.566 61.111 0.00 0.00 0.00 2.69
114 115 3.646715 CCTTCACCGCCCCCTTGA 61.647 66.667 0.00 0.00 0.00 3.02
115 116 3.628646 CTCCTTCACCGCCCCCTTG 62.629 68.421 0.00 0.00 0.00 3.61
116 117 3.330720 CTCCTTCACCGCCCCCTT 61.331 66.667 0.00 0.00 0.00 3.95
122 123 3.787001 CTCCCCCTCCTTCACCGC 61.787 72.222 0.00 0.00 0.00 5.68
123 124 2.898472 ATCCTCCCCCTCCTTCACCG 62.898 65.000 0.00 0.00 0.00 4.94
124 125 0.267960 TATCCTCCCCCTCCTTCACC 59.732 60.000 0.00 0.00 0.00 4.02
125 126 1.062044 AGTATCCTCCCCCTCCTTCAC 60.062 57.143 0.00 0.00 0.00 3.18
126 127 1.062121 CAGTATCCTCCCCCTCCTTCA 60.062 57.143 0.00 0.00 0.00 3.02
127 128 1.062044 ACAGTATCCTCCCCCTCCTTC 60.062 57.143 0.00 0.00 0.00 3.46
128 129 1.027815 ACAGTATCCTCCCCCTCCTT 58.972 55.000 0.00 0.00 0.00 3.36
129 130 0.563672 GACAGTATCCTCCCCCTCCT 59.436 60.000 0.00 0.00 0.00 3.69
130 131 0.563672 AGACAGTATCCTCCCCCTCC 59.436 60.000 0.00 0.00 0.00 4.30
131 132 1.481615 GGAGACAGTATCCTCCCCCTC 60.482 61.905 7.00 0.00 42.35 4.30
132 133 0.563672 GGAGACAGTATCCTCCCCCT 59.436 60.000 7.00 0.00 42.35 4.79
133 134 0.563672 AGGAGACAGTATCCTCCCCC 59.436 60.000 11.27 0.00 44.05 5.40
139 140 2.223745 GACTCGGAGGAGACAGTATCC 58.776 57.143 6.05 6.05 43.27 2.59
140 141 1.868498 CGACTCGGAGGAGACAGTATC 59.132 57.143 10.23 0.00 43.27 2.24
141 142 1.209990 ACGACTCGGAGGAGACAGTAT 59.790 52.381 10.23 0.00 43.27 2.12
142 143 0.612229 ACGACTCGGAGGAGACAGTA 59.388 55.000 10.23 0.00 43.27 2.74
143 144 0.250814 AACGACTCGGAGGAGACAGT 60.251 55.000 10.23 0.00 43.27 3.55
144 145 0.169230 CAACGACTCGGAGGAGACAG 59.831 60.000 10.23 0.00 43.27 3.51
145 146 1.241990 CCAACGACTCGGAGGAGACA 61.242 60.000 10.23 0.00 43.27 3.41
146 147 1.242665 ACCAACGACTCGGAGGAGAC 61.243 60.000 15.77 0.00 43.27 3.36
147 148 0.959372 GACCAACGACTCGGAGGAGA 60.959 60.000 15.77 0.00 43.27 3.71
148 149 1.507174 GACCAACGACTCGGAGGAG 59.493 63.158 15.77 5.26 46.13 3.69
149 150 2.330372 CGACCAACGACTCGGAGGA 61.330 63.158 15.77 0.00 45.77 3.71
150 151 2.178521 CGACCAACGACTCGGAGG 59.821 66.667 10.23 6.64 45.77 4.30
151 152 1.134901 CTCGACCAACGACTCGGAG 59.865 63.158 2.83 2.83 46.45 4.63
152 153 2.974489 GCTCGACCAACGACTCGGA 61.974 63.158 2.98 0.00 46.45 4.55
153 154 2.504244 GCTCGACCAACGACTCGG 60.504 66.667 2.98 0.00 46.45 4.63
154 155 1.797933 CTGCTCGACCAACGACTCG 60.798 63.158 0.00 0.00 46.45 4.18
155 156 2.089349 GCTGCTCGACCAACGACTC 61.089 63.158 0.00 0.00 46.45 3.36
156 157 2.049063 GCTGCTCGACCAACGACT 60.049 61.111 0.00 0.00 46.45 4.18
157 158 2.049063 AGCTGCTCGACCAACGAC 60.049 61.111 0.00 0.00 46.45 4.34
159 160 0.946221 AAAGAGCTGCTCGACCAACG 60.946 55.000 22.77 0.00 44.09 4.10
160 161 2.080286 TAAAGAGCTGCTCGACCAAC 57.920 50.000 22.77 0.00 35.36 3.77
161 162 2.806244 GTTTAAAGAGCTGCTCGACCAA 59.194 45.455 22.77 13.06 35.36 3.67
162 163 2.224185 TGTTTAAAGAGCTGCTCGACCA 60.224 45.455 22.77 12.33 35.36 4.02
163 164 2.413453 CTGTTTAAAGAGCTGCTCGACC 59.587 50.000 22.77 10.12 35.36 4.79
164 165 3.122111 GTCTGTTTAAAGAGCTGCTCGAC 59.878 47.826 22.77 16.72 35.36 4.20
165 166 3.243737 TGTCTGTTTAAAGAGCTGCTCGA 60.244 43.478 22.77 10.52 35.36 4.04
166 167 3.059884 TGTCTGTTTAAAGAGCTGCTCG 58.940 45.455 22.77 7.24 35.36 5.03
167 168 5.424121 TTTGTCTGTTTAAAGAGCTGCTC 57.576 39.130 21.72 21.72 0.00 4.26
168 169 5.125417 TGTTTTGTCTGTTTAAAGAGCTGCT 59.875 36.000 0.00 0.00 0.00 4.24
169 170 5.339990 TGTTTTGTCTGTTTAAAGAGCTGC 58.660 37.500 7.47 0.00 0.00 5.25
170 171 7.810766 TTTGTTTTGTCTGTTTAAAGAGCTG 57.189 32.000 7.47 0.00 0.00 4.24
177 178 9.535878 GGATGGTATTTTGTTTTGTCTGTTTAA 57.464 29.630 0.00 0.00 0.00 1.52
178 179 8.696374 TGGATGGTATTTTGTTTTGTCTGTTTA 58.304 29.630 0.00 0.00 0.00 2.01
179 180 7.560368 TGGATGGTATTTTGTTTTGTCTGTTT 58.440 30.769 0.00 0.00 0.00 2.83
180 181 7.118496 TGGATGGTATTTTGTTTTGTCTGTT 57.882 32.000 0.00 0.00 0.00 3.16
181 182 6.723298 TGGATGGTATTTTGTTTTGTCTGT 57.277 33.333 0.00 0.00 0.00 3.41
182 183 7.543172 CAGATGGATGGTATTTTGTTTTGTCTG 59.457 37.037 0.00 0.00 0.00 3.51
183 184 7.451255 TCAGATGGATGGTATTTTGTTTTGTCT 59.549 33.333 0.00 0.00 0.00 3.41
184 185 7.601856 TCAGATGGATGGTATTTTGTTTTGTC 58.398 34.615 0.00 0.00 0.00 3.18
185 186 7.537596 TCAGATGGATGGTATTTTGTTTTGT 57.462 32.000 0.00 0.00 0.00 2.83
186 187 8.875803 CAATCAGATGGATGGTATTTTGTTTTG 58.124 33.333 0.00 0.00 36.02 2.44
187 188 8.814931 TCAATCAGATGGATGGTATTTTGTTTT 58.185 29.630 0.00 0.00 36.02 2.43
188 189 8.365060 TCAATCAGATGGATGGTATTTTGTTT 57.635 30.769 0.00 0.00 36.02 2.83
189 190 7.616935 ACTCAATCAGATGGATGGTATTTTGTT 59.383 33.333 0.00 0.00 36.02 2.83
190 191 7.121382 ACTCAATCAGATGGATGGTATTTTGT 58.879 34.615 0.00 0.00 36.02 2.83
191 192 7.578310 ACTCAATCAGATGGATGGTATTTTG 57.422 36.000 0.00 0.00 36.02 2.44
192 193 9.293404 CATACTCAATCAGATGGATGGTATTTT 57.707 33.333 0.00 0.00 36.02 1.82
193 194 8.663167 TCATACTCAATCAGATGGATGGTATTT 58.337 33.333 0.00 0.00 36.02 1.40
194 195 8.211030 TCATACTCAATCAGATGGATGGTATT 57.789 34.615 0.00 0.00 36.02 1.89
195 196 7.803487 TCATACTCAATCAGATGGATGGTAT 57.197 36.000 0.00 0.00 36.02 2.73
196 197 7.093156 GGATCATACTCAATCAGATGGATGGTA 60.093 40.741 0.00 0.00 36.02 3.25
197 198 6.296317 GGATCATACTCAATCAGATGGATGGT 60.296 42.308 0.00 0.00 36.02 3.55
198 199 6.114089 GGATCATACTCAATCAGATGGATGG 58.886 44.000 0.00 0.00 36.02 3.51
199 200 6.114089 GGGATCATACTCAATCAGATGGATG 58.886 44.000 0.00 0.00 36.02 3.51
200 201 5.105023 CGGGATCATACTCAATCAGATGGAT 60.105 44.000 0.00 0.00 38.05 3.41
201 202 4.221482 CGGGATCATACTCAATCAGATGGA 59.779 45.833 0.00 0.00 0.00 3.41
202 203 4.221482 TCGGGATCATACTCAATCAGATGG 59.779 45.833 0.00 0.00 0.00 3.51
203 204 5.397142 TCGGGATCATACTCAATCAGATG 57.603 43.478 0.00 0.00 0.00 2.90
204 205 6.617782 AATCGGGATCATACTCAATCAGAT 57.382 37.500 0.00 0.00 0.00 2.90
205 206 6.425210 AAATCGGGATCATACTCAATCAGA 57.575 37.500 0.00 0.00 0.00 3.27
206 207 8.783833 ATAAAATCGGGATCATACTCAATCAG 57.216 34.615 0.00 0.00 0.00 2.90
207 208 9.573166 AAATAAAATCGGGATCATACTCAATCA 57.427 29.630 0.00 0.00 0.00 2.57
209 210 9.799106 AGAAATAAAATCGGGATCATACTCAAT 57.201 29.630 0.00 0.00 0.00 2.57
210 211 9.273016 GAGAAATAAAATCGGGATCATACTCAA 57.727 33.333 0.00 0.00 0.00 3.02
211 212 8.428852 TGAGAAATAAAATCGGGATCATACTCA 58.571 33.333 0.00 0.00 0.00 3.41
212 213 8.833231 TGAGAAATAAAATCGGGATCATACTC 57.167 34.615 0.00 0.00 0.00 2.59
213 214 7.389053 GCTGAGAAATAAAATCGGGATCATACT 59.611 37.037 0.00 0.00 0.00 2.12
214 215 7.389053 AGCTGAGAAATAAAATCGGGATCATAC 59.611 37.037 0.00 0.00 0.00 2.39
215 216 7.453393 AGCTGAGAAATAAAATCGGGATCATA 58.547 34.615 0.00 0.00 0.00 2.15
216 217 6.302269 AGCTGAGAAATAAAATCGGGATCAT 58.698 36.000 0.00 0.00 0.00 2.45
217 218 5.684704 AGCTGAGAAATAAAATCGGGATCA 58.315 37.500 0.00 0.00 0.00 2.92
218 219 6.484977 AGAAGCTGAGAAATAAAATCGGGATC 59.515 38.462 0.00 0.00 0.00 3.36
219 220 6.360618 AGAAGCTGAGAAATAAAATCGGGAT 58.639 36.000 0.00 0.00 0.00 3.85
220 221 5.745227 AGAAGCTGAGAAATAAAATCGGGA 58.255 37.500 0.00 0.00 0.00 5.14
221 222 6.442513 AAGAAGCTGAGAAATAAAATCGGG 57.557 37.500 0.00 0.00 0.00 5.14
265 266 9.995003 ACAAGCAAATTATTGATAAAACTCCAA 57.005 25.926 5.30 0.00 38.94 3.53
266 267 9.421806 CACAAGCAAATTATTGATAAAACTCCA 57.578 29.630 5.30 0.00 38.94 3.86
267 268 9.423061 ACACAAGCAAATTATTGATAAAACTCC 57.577 29.630 5.30 0.00 38.94 3.85
272 273 9.853555 CACCTACACAAGCAAATTATTGATAAA 57.146 29.630 5.30 0.00 38.94 1.40
273 274 8.465999 CCACCTACACAAGCAAATTATTGATAA 58.534 33.333 5.30 0.00 38.94 1.75
274 275 7.068103 CCCACCTACACAAGCAAATTATTGATA 59.932 37.037 5.30 0.00 38.94 2.15
275 276 6.127366 CCCACCTACACAAGCAAATTATTGAT 60.127 38.462 5.30 0.00 38.94 2.57
276 277 5.184864 CCCACCTACACAAGCAAATTATTGA 59.815 40.000 5.30 0.00 38.94 2.57
277 278 5.410067 CCCACCTACACAAGCAAATTATTG 58.590 41.667 0.00 0.00 39.65 1.90
278 279 4.466015 CCCCACCTACACAAGCAAATTATT 59.534 41.667 0.00 0.00 0.00 1.40
279 280 4.023291 CCCCACCTACACAAGCAAATTAT 58.977 43.478 0.00 0.00 0.00 1.28
280 281 3.074687 TCCCCACCTACACAAGCAAATTA 59.925 43.478 0.00 0.00 0.00 1.40
281 282 2.158385 TCCCCACCTACACAAGCAAATT 60.158 45.455 0.00 0.00 0.00 1.82
282 283 1.427368 TCCCCACCTACACAAGCAAAT 59.573 47.619 0.00 0.00 0.00 2.32
283 284 0.847373 TCCCCACCTACACAAGCAAA 59.153 50.000 0.00 0.00 0.00 3.68
284 285 0.109723 GTCCCCACCTACACAAGCAA 59.890 55.000 0.00 0.00 0.00 3.91
285 286 1.758592 GTCCCCACCTACACAAGCA 59.241 57.895 0.00 0.00 0.00 3.91
286 287 1.002502 GGTCCCCACCTACACAAGC 60.003 63.158 0.00 0.00 40.00 4.01
295 296 1.680860 CGAAAATACCAGGTCCCCACC 60.681 57.143 0.00 0.00 44.19 4.61
296 297 1.680860 CCGAAAATACCAGGTCCCCAC 60.681 57.143 0.00 0.00 0.00 4.61
297 298 0.621609 CCGAAAATACCAGGTCCCCA 59.378 55.000 0.00 0.00 0.00 4.96
298 299 0.913924 TCCGAAAATACCAGGTCCCC 59.086 55.000 0.00 0.00 0.00 4.81
299 300 1.558294 ACTCCGAAAATACCAGGTCCC 59.442 52.381 0.00 0.00 0.00 4.46
300 301 2.419713 GGACTCCGAAAATACCAGGTCC 60.420 54.545 0.00 0.00 35.85 4.46
301 302 2.500504 AGGACTCCGAAAATACCAGGTC 59.499 50.000 0.00 0.00 0.00 3.85
302 303 2.547990 AGGACTCCGAAAATACCAGGT 58.452 47.619 0.00 0.00 0.00 4.00
303 304 3.629142 AAGGACTCCGAAAATACCAGG 57.371 47.619 0.00 0.00 0.00 4.45
304 305 4.511826 GCATAAGGACTCCGAAAATACCAG 59.488 45.833 0.00 0.00 0.00 4.00
305 306 4.448210 GCATAAGGACTCCGAAAATACCA 58.552 43.478 0.00 0.00 0.00 3.25
306 307 3.493503 CGCATAAGGACTCCGAAAATACC 59.506 47.826 0.00 0.00 0.00 2.73
307 308 4.365723 TCGCATAAGGACTCCGAAAATAC 58.634 43.478 0.00 0.00 0.00 1.89
308 309 4.500887 CCTCGCATAAGGACTCCGAAAATA 60.501 45.833 0.00 0.00 38.87 1.40
309 310 3.458189 CTCGCATAAGGACTCCGAAAAT 58.542 45.455 0.00 0.00 0.00 1.82
310 311 2.418197 CCTCGCATAAGGACTCCGAAAA 60.418 50.000 0.00 0.00 38.87 2.29
311 312 1.136305 CCTCGCATAAGGACTCCGAAA 59.864 52.381 0.00 0.00 38.87 3.46
312 313 0.744874 CCTCGCATAAGGACTCCGAA 59.255 55.000 0.00 0.00 38.87 4.30
313 314 0.106868 TCCTCGCATAAGGACTCCGA 60.107 55.000 0.00 0.00 40.60 4.55
314 315 0.744874 TTCCTCGCATAAGGACTCCG 59.255 55.000 0.00 0.00 45.20 4.63
315 316 2.032620 TCTTCCTCGCATAAGGACTCC 58.967 52.381 0.00 0.00 45.20 3.85
316 317 3.802948 TTCTTCCTCGCATAAGGACTC 57.197 47.619 0.00 0.00 45.20 3.36
317 318 4.762289 ATTTCTTCCTCGCATAAGGACT 57.238 40.909 0.00 0.00 45.20 3.85
318 319 6.539103 ACTTTATTTCTTCCTCGCATAAGGAC 59.461 38.462 0.00 0.00 45.20 3.85
319 320 6.650120 ACTTTATTTCTTCCTCGCATAAGGA 58.350 36.000 0.00 0.00 43.84 3.36
320 321 6.927294 ACTTTATTTCTTCCTCGCATAAGG 57.073 37.500 0.00 0.00 37.81 2.69
321 322 9.626045 AAAAACTTTATTTCTTCCTCGCATAAG 57.374 29.630 0.00 0.00 0.00 1.73
400 402 4.490899 TTGGTACGTATAGGCCAATGTT 57.509 40.909 5.01 0.00 35.27 2.71
426 428 3.560068 AGTTTGGTTCGCACAAGACTTAG 59.440 43.478 0.00 0.00 0.00 2.18
427 429 3.537580 AGTTTGGTTCGCACAAGACTTA 58.462 40.909 0.00 0.00 0.00 2.24
446 448 2.432874 GCTTTAACCACCCAACCAAAGT 59.567 45.455 0.00 0.00 0.00 2.66
449 451 2.160721 TGCTTTAACCACCCAACCAA 57.839 45.000 0.00 0.00 0.00 3.67
457 459 6.260271 GGAGATACCACTATTGCTTTAACCAC 59.740 42.308 0.00 0.00 38.79 4.16
464 466 3.181450 GGCTGGAGATACCACTATTGCTT 60.181 47.826 0.00 0.00 44.64 3.91
467 469 2.705658 TGGGCTGGAGATACCACTATTG 59.294 50.000 0.00 0.00 44.64 1.90
468 470 3.060479 TGGGCTGGAGATACCACTATT 57.940 47.619 0.00 0.00 44.64 1.73
479 481 1.298014 GAACTCTGGTGGGCTGGAG 59.702 63.158 0.00 0.00 0.00 3.86
484 486 1.202818 AGAACTTGAACTCTGGTGGGC 60.203 52.381 0.00 0.00 0.00 5.36
489 491 3.672808 AGCATCAGAACTTGAACTCTGG 58.327 45.455 0.00 0.00 39.77 3.86
493 495 2.072298 GCGAGCATCAGAACTTGAACT 58.928 47.619 0.00 0.00 39.77 3.01
497 499 4.808077 ATAATGCGAGCATCAGAACTTG 57.192 40.909 11.26 0.00 35.31 3.16
502 504 3.396560 CAGGAATAATGCGAGCATCAGA 58.603 45.455 11.26 0.75 35.31 3.27
508 510 5.886960 ATAAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
520 522 6.604795 ACACTCATCCTTGAAATAAATCCAGG 59.395 38.462 0.00 0.00 34.35 4.45
544 639 1.255342 CGCTCACACATACACGCATAC 59.745 52.381 0.00 0.00 0.00 2.39
551 646 1.625759 CGCAAGCGCTCACACATACA 61.626 55.000 12.06 0.00 35.30 2.29
558 653 1.733041 TACAGACGCAAGCGCTCAC 60.733 57.895 12.06 4.69 44.19 3.51
563 658 1.775344 CACAGTACAGACGCAAGCG 59.225 57.895 13.50 13.50 46.03 4.68
591 686 7.501559 ACGCTATTCAGGATACAAGACTTACTA 59.498 37.037 0.00 0.00 41.41 1.82
592 687 6.321690 ACGCTATTCAGGATACAAGACTTACT 59.678 38.462 0.00 0.00 41.41 2.24
593 688 6.418226 CACGCTATTCAGGATACAAGACTTAC 59.582 42.308 0.00 0.00 41.41 2.34
594 689 6.096423 ACACGCTATTCAGGATACAAGACTTA 59.904 38.462 0.00 0.00 41.41 2.24
595 690 5.105310 ACACGCTATTCAGGATACAAGACTT 60.105 40.000 0.00 0.00 41.41 3.01
596 691 4.402793 ACACGCTATTCAGGATACAAGACT 59.597 41.667 0.00 0.00 41.41 3.24
597 692 4.504461 CACACGCTATTCAGGATACAAGAC 59.496 45.833 0.00 0.00 41.41 3.01
598 693 4.159693 ACACACGCTATTCAGGATACAAGA 59.840 41.667 0.00 0.00 41.41 3.02
599 694 4.433615 ACACACGCTATTCAGGATACAAG 58.566 43.478 0.00 0.00 41.41 3.16
600 695 4.465632 ACACACGCTATTCAGGATACAA 57.534 40.909 0.00 0.00 41.41 2.41
603 698 4.082949 CGGATACACACGCTATTCAGGATA 60.083 45.833 0.00 0.00 0.00 2.59
606 701 2.034179 TCGGATACACACGCTATTCAGG 59.966 50.000 0.00 0.00 0.00 3.86
607 702 3.043586 GTCGGATACACACGCTATTCAG 58.956 50.000 0.00 0.00 0.00 3.02
608 703 2.686405 AGTCGGATACACACGCTATTCA 59.314 45.455 0.00 0.00 0.00 2.57
609 704 3.298317 GAGTCGGATACACACGCTATTC 58.702 50.000 0.00 0.00 0.00 1.75
610 705 2.286831 CGAGTCGGATACACACGCTATT 60.287 50.000 4.10 0.00 0.00 1.73
616 711 0.589229 CTCGCGAGTCGGATACACAC 60.589 60.000 27.79 0.00 39.05 3.82
644 739 2.158871 GCATCCAGTTGGGTACGGATTA 60.159 50.000 0.00 0.00 37.76 1.75
661 761 2.747396 TTGCAGTGATTTTGGGCATC 57.253 45.000 0.00 0.00 34.03 3.91
765 865 3.114616 CGTCCACTTCAGCCGCTG 61.115 66.667 14.62 14.62 0.00 5.18
787 887 1.452801 GGGACGACTTTGGGTTGGA 59.547 57.895 0.00 0.00 33.71 3.53
906 1006 4.446051 CAGACTTCAGAAGGAAAGACGTTC 59.554 45.833 14.90 0.00 41.79 3.95
907 1007 4.099573 TCAGACTTCAGAAGGAAAGACGTT 59.900 41.667 14.90 0.00 34.44 3.99
908 1008 3.637229 TCAGACTTCAGAAGGAAAGACGT 59.363 43.478 14.90 0.00 34.44 4.34
910 1010 5.641636 GGATTCAGACTTCAGAAGGAAAGAC 59.358 44.000 14.90 5.23 34.44 3.01
912 1012 4.629200 CGGATTCAGACTTCAGAAGGAAAG 59.371 45.833 14.90 2.01 34.44 2.62
913 1013 4.569943 CGGATTCAGACTTCAGAAGGAAA 58.430 43.478 14.90 3.64 34.44 3.13
914 1014 3.617531 GCGGATTCAGACTTCAGAAGGAA 60.618 47.826 14.90 8.66 0.00 3.36
915 1015 2.093973 GCGGATTCAGACTTCAGAAGGA 60.094 50.000 14.90 0.00 0.00 3.36
916 1016 2.275318 GCGGATTCAGACTTCAGAAGG 58.725 52.381 14.90 0.00 0.00 3.46
918 1018 1.996292 CGCGGATTCAGACTTCAGAA 58.004 50.000 0.00 0.00 0.00 3.02
926 1037 1.582610 GGTTTTGGCGCGGATTCAGA 61.583 55.000 8.83 0.00 0.00 3.27
1349 1465 3.422603 CGAAACGTGGAAATGTAAGGACG 60.423 47.826 0.00 0.00 0.00 4.79
1386 1502 1.004320 ACCGAGCAAACGCATGGTA 60.004 52.632 0.00 0.00 37.39 3.25
1526 1656 6.406692 ACTGAAGCAGAAAACAGAGTACTA 57.593 37.500 0.00 0.00 35.18 1.82
1556 1686 6.625362 TGAGCTGAACTAAGTGATTGTCTAG 58.375 40.000 0.00 0.00 0.00 2.43
1599 1736 5.837979 TCTTCCCTGATTCATTTGAACCAAA 59.162 36.000 0.00 0.00 37.75 3.28
1601 1738 4.996793 TCTTCCCTGATTCATTTGAACCA 58.003 39.130 0.00 0.00 36.80 3.67
1612 1749 8.284435 TCATCTAAAAATCCATCTTCCCTGATT 58.716 33.333 0.00 0.00 0.00 2.57
1642 1779 1.954382 GGCCGGGGATGATAAAAGTTC 59.046 52.381 2.18 0.00 0.00 3.01
1649 1786 2.217038 GCAGAGGCCGGGGATGATA 61.217 63.158 2.18 0.00 0.00 2.15
1652 1789 3.839353 GATGCAGAGGCCGGGGATG 62.839 68.421 2.18 0.00 40.13 3.51
1656 1793 0.037303 ATTATGATGCAGAGGCCGGG 59.963 55.000 2.18 0.00 40.13 5.73
1723 1860 1.679032 CCTTCCCCTACTTTTCGGCAG 60.679 57.143 0.00 0.00 0.00 4.85
1772 1909 5.668471 ACAGTGACTGATATCAACCATCTG 58.332 41.667 20.97 16.09 35.18 2.90
1818 1959 4.142513 TGTTCCAAATTGCAAACCAAAAGC 60.143 37.500 1.71 0.00 36.92 3.51
1824 1965 2.802247 GCTCTGTTCCAAATTGCAAACC 59.198 45.455 1.71 0.00 0.00 3.27
1833 1974 6.899393 ATCAACTAAATGCTCTGTTCCAAA 57.101 33.333 0.00 0.00 0.00 3.28
1859 2000 1.595311 ACCACCCTTGATCCAGCATA 58.405 50.000 0.00 0.00 0.00 3.14
1906 2047 8.662781 ATCATGTATACCATATACGAATTGCC 57.337 34.615 0.00 0.00 30.71 4.52
1941 2093 1.450025 GGCAACTTTCCCTACCGAAG 58.550 55.000 0.00 0.00 0.00 3.79
2010 2162 0.757188 AAATCCCAAACGTGTGGCCA 60.757 50.000 20.15 0.00 37.34 5.36
2340 2492 5.808366 TTCTGGGATAGGATGTGTATCAC 57.192 43.478 0.00 0.00 34.90 3.06
2403 2555 2.716217 CAAAAGCCTTAGTCTCAGGGG 58.284 52.381 2.21 0.00 31.20 4.79
2554 2706 3.009033 TCCATGTGCTAGTACTTTGCCTT 59.991 43.478 12.42 0.00 0.00 4.35
2811 2963 2.953453 AGCCCTTAAAAGTCGGGTTTT 58.047 42.857 0.00 2.00 40.22 2.43
2985 3137 5.695851 ATTTGCAAACAGAGTAACCAGAG 57.304 39.130 15.41 0.00 0.00 3.35
2990 3142 4.280929 AGGGGAATTTGCAAACAGAGTAAC 59.719 41.667 15.41 0.71 0.00 2.50
3029 3182 4.337555 ACAATAGCAGGATCACATCAAAGC 59.662 41.667 0.00 0.00 0.00 3.51
3033 3186 3.493176 CCGACAATAGCAGGATCACATCA 60.493 47.826 0.00 0.00 0.00 3.07
3051 3204 8.521176 AGTGTTTACATATGATAGTATCCCGAC 58.479 37.037 10.38 0.00 0.00 4.79
3080 3233 6.519353 TGTCGTAAACACTTGTAGTCATTG 57.481 37.500 0.00 0.00 31.20 2.82
3130 3283 9.760660 GTATGTAACACTGAGCTTAATTTGAAG 57.239 33.333 0.00 0.00 0.00 3.02
3169 3323 0.402121 AAAGTGCTTCCTCCAGTCCC 59.598 55.000 0.00 0.00 0.00 4.46
3230 3386 6.612306 CAGAGGTCAGGTTTACTTTATTTGC 58.388 40.000 0.00 0.00 0.00 3.68
3320 3477 4.694760 ATTGCTCTTTTTGGCCTCTTTT 57.305 36.364 3.32 0.00 0.00 2.27
3352 3509 2.416836 GGTATTTTCTTTGAAGGCGGCC 60.417 50.000 12.11 12.11 0.00 6.13
3459 3616 6.018262 CCCAATATGGTTGTATGTAACACTCG 60.018 42.308 0.00 0.00 34.16 4.18
3554 3711 4.933400 TCCCATCAAAAGCTACTTTACGAC 59.067 41.667 0.00 0.00 31.99 4.34
4001 4158 0.451783 CCGATAACCCAACAAGCTGC 59.548 55.000 0.00 0.00 0.00 5.25
4080 4237 4.576330 AAAGTGAAAGGATAGGACCCAG 57.424 45.455 0.00 0.00 0.00 4.45
4144 4301 4.794278 TCAGGTTTAGCTATGTCGAACA 57.206 40.909 7.38 0.00 0.00 3.18
4218 4375 2.472695 AGCGGTATCAAAAGACAGCA 57.527 45.000 0.00 0.00 39.80 4.41
4234 4391 4.817517 ACGGATAATTCAAGGGTATAGCG 58.182 43.478 0.00 0.00 0.00 4.26
4361 4526 5.947663 TCTGGACCCTTTCTCAAATTTGTA 58.052 37.500 17.47 5.12 0.00 2.41
4440 4605 4.977963 AGTTTCAGAATGCAAAATCGTGTG 59.022 37.500 0.00 0.00 34.76 3.82
4685 4853 6.261826 CACAGAGGAGAAAGTGAAAACATCTT 59.738 38.462 0.00 0.00 33.99 2.40
4818 4986 6.870439 CGACAGATTGAATCTTCATGCCTATA 59.130 38.462 4.67 0.00 37.58 1.31
4865 5033 7.998383 TGGACCTGAAAATGCAACATACTATAT 59.002 33.333 0.00 0.00 0.00 0.86
4866 5034 7.342581 TGGACCTGAAAATGCAACATACTATA 58.657 34.615 0.00 0.00 0.00 1.31
4971 5139 3.459232 TGAACTAGATGATCTTGGCCG 57.541 47.619 0.00 0.00 0.00 6.13
5044 5212 4.581077 AGGTCGTCTAAACTTCTTCGTT 57.419 40.909 0.00 0.00 0.00 3.85
5168 5336 8.492673 TTTTTCACTTCTGTATGTAGCCATAG 57.507 34.615 0.00 0.00 34.25 2.23
5190 5358 8.257306 GGATGTCATAAACACCCATGTATTTTT 58.743 33.333 0.00 0.00 41.91 1.94
5301 5469 5.393352 GCAATCCAACAACAGATAGCATCAA 60.393 40.000 0.00 0.00 0.00 2.57
5360 5528 3.089284 CTCGGCCTTTTCAGGGTAATTT 58.911 45.455 0.00 0.00 41.21 1.82
5434 5602 7.099266 TGGTACAATGAAAATCTTAGGCATG 57.901 36.000 0.00 0.00 31.92 4.06
5435 5603 6.891908 ACTGGTACAATGAAAATCTTAGGCAT 59.108 34.615 0.00 0.00 38.70 4.40
5436 5604 6.245408 ACTGGTACAATGAAAATCTTAGGCA 58.755 36.000 0.00 0.00 38.70 4.75
5730 5900 1.284785 GACAGAAATGGGGGATGGACA 59.715 52.381 0.00 0.00 0.00 4.02
5731 5901 1.747206 CGACAGAAATGGGGGATGGAC 60.747 57.143 0.00 0.00 0.00 4.02
5755 5925 2.159653 CGAAGCTTTTGATGAACCCTCG 60.160 50.000 0.00 0.00 0.00 4.63
5833 6003 1.807755 GCCTGCTGCTCGATGTAATGA 60.808 52.381 0.00 0.00 36.87 2.57
5855 6025 3.063510 CTTGATGAGCTCCTGGTTCAA 57.936 47.619 12.15 11.16 38.58 2.69
5920 6090 0.697658 TGACCTCCACAATCATGGCA 59.302 50.000 0.00 0.00 39.85 4.92
5983 6153 3.135225 CCGTTATTTATGGTCGCCATCA 58.865 45.455 13.58 2.21 40.74 3.07
6008 6178 0.457853 GCCGCTGACATCTTACACGA 60.458 55.000 0.00 0.00 0.00 4.35
6013 6187 0.744414 GCCAAGCCGCTGACATCTTA 60.744 55.000 0.00 0.00 0.00 2.10
6014 6188 2.042831 GCCAAGCCGCTGACATCTT 61.043 57.895 0.00 0.00 0.00 2.40
6015 6189 2.437359 GCCAAGCCGCTGACATCT 60.437 61.111 0.00 0.00 0.00 2.90
6016 6190 2.747460 TGCCAAGCCGCTGACATC 60.747 61.111 0.00 0.00 0.00 3.06
6035 6209 5.247862 TCATCACAGCAACACACATCTATT 58.752 37.500 0.00 0.00 0.00 1.73
6037 6211 4.270245 TCATCACAGCAACACACATCTA 57.730 40.909 0.00 0.00 0.00 1.98
6122 6296 1.526575 CTTGCGCCATGGAACTGGTT 61.527 55.000 18.40 0.00 38.63 3.67
6188 6362 5.642063 CCAAAGTATACAACAGGTGAATCGT 59.358 40.000 5.50 0.00 0.00 3.73
6190 6364 5.414454 TGCCAAAGTATACAACAGGTGAATC 59.586 40.000 5.50 0.00 0.00 2.52
6343 6517 3.832237 CTGCGAGGTGGCAAGTGGT 62.832 63.158 0.00 0.00 43.39 4.16
6355 6529 1.302033 ACAGGAACCAAGCTGCGAG 60.302 57.895 0.00 0.00 0.00 5.03
6547 6726 3.181450 ACAGAAGCTTACATCATAGGCCC 60.181 47.826 0.00 0.00 0.00 5.80
6650 6829 1.402984 GGTCTCGTCTTCGACATGCTT 60.403 52.381 0.00 0.00 41.35 3.91
6742 6921 1.954382 TGCTCTACGACACACTCAACT 59.046 47.619 0.00 0.00 0.00 3.16
6749 6928 2.257371 GCGGTGCTCTACGACACA 59.743 61.111 0.00 0.00 38.57 3.72
6830 7009 4.158949 GTGTCCTTCTTCCTCTTCTACTCC 59.841 50.000 0.00 0.00 0.00 3.85
6833 7012 3.506844 ACGTGTCCTTCTTCCTCTTCTAC 59.493 47.826 0.00 0.00 0.00 2.59
6845 7024 4.373771 GTGGGGAACGTGTCCTTC 57.626 61.111 13.94 8.98 46.92 3.46
6875 7054 2.436824 GAGTTCTTGGGCTCCGGC 60.437 66.667 0.00 0.00 37.82 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.