Multiple sequence alignment - TraesCS7D01G374900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G374900 chr7D 100.000 4869 0 0 1 4869 485094762 485099630 0.000000e+00 8992.0
1 TraesCS7D01G374900 chr7B 93.062 2796 132 25 765 3519 512749916 512752690 0.000000e+00 4032.0
2 TraesCS7D01G374900 chr7B 92.910 677 28 11 3678 4339 512752689 512753360 0.000000e+00 966.0
3 TraesCS7D01G374900 chr7B 88.571 350 17 11 226 562 512749023 512749362 2.110000e-108 403.0
4 TraesCS7D01G374900 chr7B 92.623 244 10 6 4634 4869 512753527 512753770 1.300000e-90 344.0
5 TraesCS7D01G374900 chr7B 96.532 173 5 1 592 763 512749705 512749877 7.980000e-73 285.0
6 TraesCS7D01G374900 chr7B 92.529 174 11 2 3507 3679 708108326 708108154 1.050000e-61 248.0
7 TraesCS7D01G374900 chr7B 90.805 87 5 1 4479 4562 512753432 512753518 3.980000e-21 113.0
8 TraesCS7D01G374900 chr7B 95.918 49 2 0 4576 4624 196962886 196962934 4.040000e-11 80.5
9 TraesCS7D01G374900 chr7B 93.182 44 2 1 66 108 336812762 336812805 4.070000e-06 63.9
10 TraesCS7D01G374900 chr7B 80.519 77 10 2 2223 2295 183292141 183292066 2.000000e-03 54.7
11 TraesCS7D01G374900 chr7A 95.479 2256 80 13 765 3020 553382664 553384897 0.000000e+00 3581.0
12 TraesCS7D01G374900 chr7A 88.845 762 45 20 20 763 553381891 553382630 0.000000e+00 900.0
13 TraesCS7D01G374900 chr7A 83.360 625 77 15 3716 4327 553385404 553386014 1.980000e-153 553.0
14 TraesCS7D01G374900 chr7A 86.994 469 40 8 3030 3486 553384940 553385399 4.350000e-140 508.0
15 TraesCS7D01G374900 chr7A 86.640 247 18 9 4634 4869 553386183 553386425 4.830000e-65 259.0
16 TraesCS7D01G374900 chr7A 84.810 158 19 3 4409 4562 553386018 553386174 2.350000e-33 154.0
17 TraesCS7D01G374900 chr3D 97.531 162 4 0 3518 3679 507038581 507038742 1.330000e-70 278.0
18 TraesCS7D01G374900 chr3D 92.571 175 12 1 3506 3680 469389444 469389271 2.910000e-62 250.0
19 TraesCS7D01G374900 chr3D 95.652 46 2 0 4576 4621 27936610 27936655 1.880000e-09 75.0
20 TraesCS7D01G374900 chr6D 96.296 162 6 0 3518 3679 6398279 6398440 2.890000e-67 267.0
21 TraesCS7D01G374900 chr6D 91.099 191 13 3 3491 3679 436728036 436727848 6.250000e-64 255.0
22 TraesCS7D01G374900 chr2B 94.578 166 9 0 3514 3679 312294659 312294494 1.740000e-64 257.0
23 TraesCS7D01G374900 chr1D 94.545 165 9 0 3517 3681 37883903 37884067 6.250000e-64 255.0
24 TraesCS7D01G374900 chr5D 93.064 173 12 0 3521 3693 517855168 517854996 2.250000e-63 254.0
25 TraesCS7D01G374900 chr5B 91.713 181 12 3 3499 3679 262365559 262365382 1.050000e-61 248.0
26 TraesCS7D01G374900 chr3A 83.761 117 15 3 2179 2295 647054754 647054866 1.850000e-19 108.0
27 TraesCS7D01G374900 chr3B 82.609 115 14 5 2182 2295 174726246 174726355 4.010000e-16 97.1
28 TraesCS7D01G374900 chr6B 91.071 56 5 0 4573 4628 43379358 43379413 5.230000e-10 76.8
29 TraesCS7D01G374900 chr6B 91.071 56 5 0 4573 4628 43441236 43441291 5.230000e-10 76.8
30 TraesCS7D01G374900 chr6B 91.071 56 5 0 4573 4628 43480223 43480278 5.230000e-10 76.8
31 TraesCS7D01G374900 chr5A 93.878 49 3 0 4582 4630 509644370 509644418 1.880000e-09 75.0
32 TraesCS7D01G374900 chr4B 95.652 46 2 0 4576 4621 488694922 488694967 1.880000e-09 75.0
33 TraesCS7D01G374900 chr2D 93.878 49 3 0 4582 4630 558182787 558182835 1.880000e-09 75.0
34 TraesCS7D01G374900 chr2A 93.878 49 3 0 4582 4630 117530103 117530055 1.880000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G374900 chr7D 485094762 485099630 4868 False 8992.000000 8992 100.000000 1 4869 1 chr7D.!!$F1 4868
1 TraesCS7D01G374900 chr7B 512749023 512753770 4747 False 1023.833333 4032 92.417167 226 4869 6 chr7B.!!$F3 4643
2 TraesCS7D01G374900 chr7A 553381891 553386425 4534 False 992.500000 3581 87.688000 20 4869 6 chr7A.!!$F1 4849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 309 0.098376 CTAGTAGACGCGTCCACCAC 59.902 60.0 34.08 24.79 0.00 4.16 F
438 449 0.691332 GGACGGAAACCCTCTTTCCT 59.309 55.0 9.58 0.00 44.35 3.36 F
1462 1835 0.896940 TAGCGAACAACCTCCCGTCT 60.897 55.0 0.00 0.00 0.00 4.18 F
2018 2391 0.610232 CTTTCAGCCCAACCCTGGAG 60.610 60.0 0.00 0.00 46.92 3.86 F
2898 3295 0.943835 GTGGCGGTCAATTGTTTGCC 60.944 55.0 22.17 22.17 42.76 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1678 2051 1.144691 TCCCCACAGTGATTCCAACA 58.855 50.000 0.62 0.0 0.0 3.33 R
1957 2330 1.483415 TGCCCCGGATCAGTTAAGTAC 59.517 52.381 0.73 0.0 0.0 2.73 R
2942 3339 0.258774 AACACTGACAGGCCTTGGTT 59.741 50.000 0.00 0.0 0.0 3.67 R
3331 3776 1.347707 TGCAGGGGAAGTGTTACAGAG 59.652 52.381 0.00 0.0 0.0 3.35 R
4636 5112 1.446016 ACCTTTTGCAGTCCCCTAGT 58.554 50.000 0.00 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.242739 GCCAACATTATACAGGTGAAGCG 60.243 47.826 0.00 0.00 0.00 4.68
62 63 0.107654 GGTGAAGCGGGCTTATGAGT 60.108 55.000 5.80 0.00 36.26 3.41
78 79 6.677187 GCTTATGAGTATATGTGCATGCATGG 60.677 42.308 25.64 10.03 0.00 3.66
79 80 4.354893 TGAGTATATGTGCATGCATGGA 57.645 40.909 25.64 22.97 0.00 3.41
80 81 4.320870 TGAGTATATGTGCATGCATGGAG 58.679 43.478 25.64 3.29 0.00 3.86
81 82 3.079578 AGTATATGTGCATGCATGGAGC 58.920 45.455 25.64 18.57 45.96 4.70
92 93 2.776312 GCATGGAGCATCTGTGATTG 57.224 50.000 0.00 0.00 44.79 2.67
93 94 2.022195 GCATGGAGCATCTGTGATTGT 58.978 47.619 0.00 0.00 44.79 2.71
95 96 3.003068 GCATGGAGCATCTGTGATTGTAC 59.997 47.826 0.00 0.00 44.79 2.90
96 97 4.449131 CATGGAGCATCTGTGATTGTACT 58.551 43.478 0.00 0.00 33.73 2.73
97 98 3.865446 TGGAGCATCTGTGATTGTACTG 58.135 45.455 0.00 0.00 33.73 2.74
99 100 3.620374 GGAGCATCTGTGATTGTACTGTG 59.380 47.826 0.00 0.00 33.73 3.66
101 102 4.645535 AGCATCTGTGATTGTACTGTGTT 58.354 39.130 0.00 0.00 0.00 3.32
102 103 5.065914 AGCATCTGTGATTGTACTGTGTTT 58.934 37.500 0.00 0.00 0.00 2.83
103 104 6.230472 AGCATCTGTGATTGTACTGTGTTTA 58.770 36.000 0.00 0.00 0.00 2.01
109 111 9.337396 TCTGTGATTGTACTGTGTTTAGAAAAT 57.663 29.630 0.00 0.00 0.00 1.82
110 112 9.950680 CTGTGATTGTACTGTGTTTAGAAAATT 57.049 29.630 0.00 0.00 0.00 1.82
137 139 9.799106 ACAGAAAAATCAGATTCTAAAAGAGGA 57.201 29.630 0.00 0.00 34.24 3.71
173 175 4.718940 ACGCATAATTCCCCAAGAAAAG 57.281 40.909 0.00 0.00 38.21 2.27
175 177 4.770010 ACGCATAATTCCCCAAGAAAAGAA 59.230 37.500 0.00 0.00 38.21 2.52
179 181 6.595326 GCATAATTCCCCAAGAAAAGAAAAGG 59.405 38.462 0.00 0.00 38.21 3.11
180 182 5.567037 AATTCCCCAAGAAAAGAAAAGGG 57.433 39.130 0.00 0.00 38.21 3.95
181 183 3.983533 TCCCCAAGAAAAGAAAAGGGA 57.016 42.857 0.00 0.00 39.78 4.20
185 187 5.104693 TCCCCAAGAAAAGAAAAGGGAAAAC 60.105 40.000 0.00 0.00 39.13 2.43
186 188 5.123227 CCCAAGAAAAGAAAAGGGAAAACC 58.877 41.667 0.00 0.00 38.60 3.27
187 189 4.808895 CCAAGAAAAGAAAAGGGAAAACCG 59.191 41.667 0.00 0.00 46.96 4.44
188 190 4.054780 AGAAAAGAAAAGGGAAAACCGC 57.945 40.909 0.00 0.00 46.96 5.68
189 191 3.449377 AGAAAAGAAAAGGGAAAACCGCA 59.551 39.130 0.00 0.00 46.96 5.69
190 192 4.100963 AGAAAAGAAAAGGGAAAACCGCAT 59.899 37.500 0.00 0.00 46.96 4.73
191 193 3.385193 AAGAAAAGGGAAAACCGCATG 57.615 42.857 0.00 0.00 46.96 4.06
193 195 2.296190 AGAAAAGGGAAAACCGCATGAC 59.704 45.455 0.00 0.00 46.96 3.06
212 215 3.118992 TGACTGACCGATCCTCAGAAATG 60.119 47.826 17.95 0.00 37.90 2.32
228 231 0.615331 AATGTGAGGCGACCACAGAT 59.385 50.000 16.11 8.81 46.19 2.90
233 236 0.532573 GAGGCGACCACAGATGAGAA 59.467 55.000 0.00 0.00 0.00 2.87
241 244 1.325640 CCACAGATGAGAAATGCGACG 59.674 52.381 0.00 0.00 0.00 5.12
291 294 1.349067 AGACCCGCAAAAGGACTAGT 58.651 50.000 0.00 0.00 0.00 2.57
302 305 0.251354 AGGACTAGTAGACGCGTCCA 59.749 55.000 34.08 20.50 46.45 4.02
305 308 0.321919 ACTAGTAGACGCGTCCACCA 60.322 55.000 34.08 20.04 0.00 4.17
306 309 0.098376 CTAGTAGACGCGTCCACCAC 59.902 60.000 34.08 24.79 0.00 4.16
340 351 4.017877 GCACGCACAGAGCACCAC 62.018 66.667 0.00 0.00 46.13 4.16
341 352 2.588596 CACGCACAGAGCACCACA 60.589 61.111 0.00 0.00 46.13 4.17
342 353 2.588877 ACGCACAGAGCACCACAC 60.589 61.111 0.00 0.00 46.13 3.82
343 354 3.349006 CGCACAGAGCACCACACC 61.349 66.667 0.00 0.00 46.13 4.16
344 355 2.203195 GCACAGAGCACCACACCA 60.203 61.111 0.00 0.00 44.79 4.17
355 366 2.899838 CACACCACACCACCACCG 60.900 66.667 0.00 0.00 0.00 4.94
414 425 5.112686 CCCTTCCGTTTCAAAAATCAAACA 58.887 37.500 0.00 0.00 32.89 2.83
415 426 5.006261 CCCTTCCGTTTCAAAAATCAAACAC 59.994 40.000 0.00 0.00 32.89 3.32
419 430 3.244111 CGTTTCAAAAATCAAACACCCCG 59.756 43.478 0.00 0.00 32.89 5.73
438 449 0.691332 GGACGGAAACCCTCTTTCCT 59.309 55.000 9.58 0.00 44.35 3.36
601 934 2.101917 TCGTCTCGTCTCCCAACTTTTT 59.898 45.455 0.00 0.00 0.00 1.94
661 995 2.464459 CCCGCCGAAGCAGATGTTC 61.464 63.158 0.00 0.00 39.83 3.18
763 1097 3.047877 GTACGTGCCACTGGGTGC 61.048 66.667 0.00 0.00 36.17 5.01
782 1153 1.012841 CAGCCGAGATTCCTTCTTGC 58.987 55.000 0.00 0.00 34.84 4.01
873 1244 1.599606 CGTCCTGCTCCTGTGCTACT 61.600 60.000 0.00 0.00 0.00 2.57
903 1274 2.685380 CCGGTGAGGAGGAAGGCT 60.685 66.667 0.00 0.00 45.00 4.58
915 1286 0.969409 GGAAGGCTGCCAAGATTGCT 60.969 55.000 22.65 0.00 0.00 3.91
1063 1434 2.359230 GCCCTTCTGACGCTGCTT 60.359 61.111 0.00 0.00 0.00 3.91
1064 1435 2.684843 GCCCTTCTGACGCTGCTTG 61.685 63.158 0.00 0.00 0.00 4.01
1220 1591 2.189521 CCCCTCACATGGTACGCC 59.810 66.667 0.00 0.00 0.00 5.68
1332 1705 2.924880 GCAACAAAATTACCACCGGCTC 60.925 50.000 0.00 0.00 0.00 4.70
1391 1764 2.365941 TGTTTACCAGGTCATCGTCACA 59.634 45.455 0.00 0.00 0.00 3.58
1462 1835 0.896940 TAGCGAACAACCTCCCGTCT 60.897 55.000 0.00 0.00 0.00 4.18
1678 2051 4.393062 CCTTACATTTCTCAGACACGCATT 59.607 41.667 0.00 0.00 0.00 3.56
1957 2330 3.125316 CAATGCATATCCCTTTTTGGCG 58.875 45.455 0.00 0.00 0.00 5.69
2018 2391 0.610232 CTTTCAGCCCAACCCTGGAG 60.610 60.000 0.00 0.00 46.92 3.86
2174 2547 4.012374 TGGAGATCAAAATCAAGCAGGAC 58.988 43.478 0.00 0.00 34.07 3.85
2263 2636 3.181329 TCCTCTCAAGCCAAAGATACCA 58.819 45.455 0.00 0.00 0.00 3.25
2542 2939 7.004086 TCCAGTAATCCACTTTCTCAACATTT 58.996 34.615 0.00 0.00 34.26 2.32
2653 3050 4.985538 AGCTTTCAAGTCCAAACCTCATA 58.014 39.130 0.00 0.00 0.00 2.15
2654 3051 5.574188 AGCTTTCAAGTCCAAACCTCATAT 58.426 37.500 0.00 0.00 0.00 1.78
2655 3052 5.416952 AGCTTTCAAGTCCAAACCTCATATG 59.583 40.000 0.00 0.00 0.00 1.78
2657 3054 6.096001 GCTTTCAAGTCCAAACCTCATATGAT 59.904 38.462 5.72 0.00 0.00 2.45
2658 3055 7.395190 TTTCAAGTCCAAACCTCATATGATG 57.605 36.000 5.72 6.14 0.00 3.07
2697 3094 5.838521 GGCCCTATCAATTTAATTTCTCCCA 59.161 40.000 0.00 0.00 0.00 4.37
2888 3285 1.077787 GGGATGAATGTGGCGGTCA 60.078 57.895 0.00 0.00 0.00 4.02
2895 3292 2.363680 TGAATGTGGCGGTCAATTGTTT 59.636 40.909 5.13 0.00 0.00 2.83
2898 3295 0.943835 GTGGCGGTCAATTGTTTGCC 60.944 55.000 22.17 22.17 42.76 4.52
2913 3310 0.988832 TTGCCGTCCTTATCCAGGTT 59.011 50.000 0.00 0.00 44.37 3.50
2919 3316 3.370527 CCGTCCTTATCCAGGTTGTGAAT 60.371 47.826 0.00 0.00 44.37 2.57
2967 3364 1.166531 GGCCTGTCAGTGTTGTGGAC 61.167 60.000 0.00 0.00 0.00 4.02
2972 3369 1.066787 TGTCAGTGTTGTGGACGAACA 60.067 47.619 0.00 0.00 34.32 3.18
2980 3377 3.311322 TGTTGTGGACGAACATGTTCTTC 59.689 43.478 30.45 29.25 37.20 2.87
2995 3392 2.552315 GTTCTTCGGCAAACAGGATTGA 59.448 45.455 0.00 0.00 31.84 2.57
2999 3396 3.627395 TCGGCAAACAGGATTGATACT 57.373 42.857 0.00 0.00 31.84 2.12
3023 3420 4.073293 TGTTGTCCAGAGAAGAACTTCC 57.927 45.455 10.41 3.67 40.33 3.46
3028 3458 3.438434 GTCCAGAGAAGAACTTCCATTGC 59.562 47.826 10.41 0.00 40.33 3.56
3039 3469 7.856145 AGAACTTCCATTGCACTAAATAGAG 57.144 36.000 0.00 0.00 0.00 2.43
3041 3471 7.550906 AGAACTTCCATTGCACTAAATAGAGAC 59.449 37.037 0.00 0.00 0.00 3.36
3046 3476 6.595326 TCCATTGCACTAAATAGAGACAACAG 59.405 38.462 0.00 0.00 0.00 3.16
3048 3478 7.281774 CCATTGCACTAAATAGAGACAACAGAT 59.718 37.037 0.00 0.00 0.00 2.90
3088 3522 6.322712 ACTGAGATCCTCCATAAAGTAGACAC 59.677 42.308 0.00 0.00 0.00 3.67
3089 3523 6.436027 TGAGATCCTCCATAAAGTAGACACT 58.564 40.000 0.00 0.00 36.19 3.55
3090 3524 7.583625 TGAGATCCTCCATAAAGTAGACACTA 58.416 38.462 0.00 0.00 33.48 2.74
3091 3525 7.721842 TGAGATCCTCCATAAAGTAGACACTAG 59.278 40.741 0.00 0.00 33.48 2.57
3092 3526 7.817440 AGATCCTCCATAAAGTAGACACTAGA 58.183 38.462 0.00 0.00 33.48 2.43
3093 3527 7.722285 AGATCCTCCATAAAGTAGACACTAGAC 59.278 40.741 0.00 0.00 33.48 2.59
3115 3549 7.715657 AGACAATGACAAGAAATTAACTTGCA 58.284 30.769 18.80 17.35 45.66 4.08
3117 3551 8.301730 ACAATGACAAGAAATTAACTTGCATG 57.698 30.769 18.80 15.33 45.66 4.06
3121 3555 6.985645 TGACAAGAAATTAACTTGCATGCTTT 59.014 30.769 20.33 8.90 45.66 3.51
3122 3556 7.169645 TGACAAGAAATTAACTTGCATGCTTTC 59.830 33.333 20.33 17.09 45.66 2.62
3141 3586 7.416022 TGCTTTCAAAACAATTTAAATGCCAG 58.584 30.769 0.39 0.00 0.00 4.85
3150 3595 7.539034 ACAATTTAAATGCCAGTAGGTTTCT 57.461 32.000 0.39 0.00 37.19 2.52
3156 3601 1.275291 TGCCAGTAGGTTTCTCTTCCG 59.725 52.381 0.00 0.00 37.19 4.30
3267 3712 5.407387 CGTCAATTCCTTTCTTCGAAGGTAA 59.593 40.000 24.37 16.93 45.24 2.85
3284 3729 6.523201 CGAAGGTAATTTGTTGTTATGAGTGC 59.477 38.462 0.00 0.00 0.00 4.40
3402 3847 5.308825 ACATCCTAGATTAATTGGCTTCCG 58.691 41.667 0.00 0.00 0.00 4.30
3424 3869 5.221009 CCGGTACTTTAGCCTACTAGAACAG 60.221 48.000 0.00 0.00 0.00 3.16
3427 3872 7.034397 GGTACTTTAGCCTACTAGAACAGTTG 58.966 42.308 0.00 0.00 38.80 3.16
3437 3882 6.097839 CCTACTAGAACAGTTGGCCACTTATA 59.902 42.308 3.88 0.00 42.16 0.98
3438 3883 5.731591 ACTAGAACAGTTGGCCACTTATAC 58.268 41.667 3.88 0.00 31.59 1.47
3473 3918 1.477700 TCGGTTCCGGGTATTGTGTAG 59.522 52.381 11.37 0.00 0.00 2.74
3524 3970 9.490083 ACTGTATTTGTTATACTTCTAGTCCCT 57.510 33.333 0.00 0.00 0.00 4.20
3525 3971 9.968870 CTGTATTTGTTATACTTCTAGTCCCTC 57.031 37.037 0.00 0.00 0.00 4.30
3526 3972 8.921205 TGTATTTGTTATACTTCTAGTCCCTCC 58.079 37.037 0.00 0.00 0.00 4.30
3527 3973 6.461110 TTTGTTATACTTCTAGTCCCTCCG 57.539 41.667 0.00 0.00 0.00 4.63
3528 3974 5.121380 TGTTATACTTCTAGTCCCTCCGT 57.879 43.478 0.00 0.00 0.00 4.69
3529 3975 5.513233 TGTTATACTTCTAGTCCCTCCGTT 58.487 41.667 0.00 0.00 0.00 4.44
3530 3976 5.591877 TGTTATACTTCTAGTCCCTCCGTTC 59.408 44.000 0.00 0.00 0.00 3.95
3531 3977 1.849977 ACTTCTAGTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
3532 3978 1.358445 ACTTCTAGTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
3533 3979 2.579860 ACTTCTAGTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
3534 3980 3.011032 ACTTCTAGTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
3535 3981 3.744940 TCTAGTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
3536 3982 4.261411 TCTAGTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
3537 3983 5.393068 TCTAGTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
3538 3984 5.961897 TCTAGTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
3539 3985 7.095183 TCTAGTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
3540 3986 7.529555 TCTAGTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
3541 3987 6.667558 AGTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3542 3988 6.141790 AGTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3543 3989 6.267242 AGTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3544 3990 6.267242 GTCCCTCCGTTCCTAAATATAAGTCT 59.733 42.308 0.00 0.00 0.00 3.24
3545 3991 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3546 3992 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3547 3993 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3548 3994 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3575 4021 8.353684 AGAGATTTTACTATGAGTCACATACGG 58.646 37.037 0.00 0.00 40.07 4.02
3576 4022 8.234136 AGATTTTACTATGAGTCACATACGGA 57.766 34.615 0.00 0.00 40.07 4.69
3577 4023 8.861086 AGATTTTACTATGAGTCACATACGGAT 58.139 33.333 0.00 0.00 40.07 4.18
3578 4024 8.818141 ATTTTACTATGAGTCACATACGGATG 57.182 34.615 5.94 5.94 40.07 3.51
3580 4026 8.454570 TTTACTATGAGTCACATACGGATGTA 57.545 34.615 14.23 0.00 44.82 2.29
3581 4027 8.631480 TTACTATGAGTCACATACGGATGTAT 57.369 34.615 14.23 5.54 44.82 2.29
3582 4028 9.729281 TTACTATGAGTCACATACGGATGTATA 57.271 33.333 14.23 6.48 44.82 1.47
3583 4029 8.809468 ACTATGAGTCACATACGGATGTATAT 57.191 34.615 14.23 1.33 44.82 0.86
3584 4030 9.901172 ACTATGAGTCACATACGGATGTATATA 57.099 33.333 14.23 7.10 44.82 0.86
3587 4033 9.634021 ATGAGTCACATACGGATGTATATAGAT 57.366 33.333 14.23 0.00 44.82 1.98
3588 4034 8.893727 TGAGTCACATACGGATGTATATAGATG 58.106 37.037 14.23 0.00 44.82 2.90
3589 4035 7.708051 AGTCACATACGGATGTATATAGATGC 58.292 38.462 14.23 0.00 44.82 3.91
3590 4036 7.339466 AGTCACATACGGATGTATATAGATGCA 59.661 37.037 14.23 0.00 44.82 3.96
3591 4037 8.138074 GTCACATACGGATGTATATAGATGCAT 58.862 37.037 14.23 0.00 44.82 3.96
3592 4038 8.695456 TCACATACGGATGTATATAGATGCATT 58.305 33.333 14.23 1.23 44.82 3.56
3593 4039 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
3594 4040 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
3598 4044 9.809096 ACGGATGTATATAGATGCATTTTAGAG 57.191 33.333 11.19 0.00 38.38 2.43
3599 4045 9.809096 CGGATGTATATAGATGCATTTTAGAGT 57.191 33.333 11.19 0.00 38.38 3.24
3610 4056 9.624373 AGATGCATTTTAGAGTGTAGATTCATT 57.376 29.630 0.00 0.00 0.00 2.57
3611 4057 9.875675 GATGCATTTTAGAGTGTAGATTCATTC 57.124 33.333 0.00 0.00 0.00 2.67
3612 4058 8.791327 TGCATTTTAGAGTGTAGATTCATTCA 57.209 30.769 0.00 0.00 0.00 2.57
3613 4059 9.399797 TGCATTTTAGAGTGTAGATTCATTCAT 57.600 29.630 0.00 0.00 0.00 2.57
3619 4065 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
3620 4066 8.345724 AGAGTGTAGATTCATTCATTTTGCTT 57.654 30.769 0.00 0.00 0.00 3.91
3621 4067 8.457261 AGAGTGTAGATTCATTCATTTTGCTTC 58.543 33.333 0.00 0.00 0.00 3.86
3622 4068 7.246311 AGTGTAGATTCATTCATTTTGCTTCG 58.754 34.615 0.00 0.00 0.00 3.79
3623 4069 7.023575 GTGTAGATTCATTCATTTTGCTTCGT 58.976 34.615 0.00 0.00 0.00 3.85
3624 4070 8.175069 GTGTAGATTCATTCATTTTGCTTCGTA 58.825 33.333 0.00 0.00 0.00 3.43
3625 4071 8.892723 TGTAGATTCATTCATTTTGCTTCGTAT 58.107 29.630 0.00 0.00 0.00 3.06
3626 4072 9.162793 GTAGATTCATTCATTTTGCTTCGTATG 57.837 33.333 0.00 0.00 0.00 2.39
3627 4073 7.765307 AGATTCATTCATTTTGCTTCGTATGT 58.235 30.769 0.00 0.00 0.00 2.29
3628 4074 7.699391 AGATTCATTCATTTTGCTTCGTATGTG 59.301 33.333 0.00 0.00 0.00 3.21
3629 4075 5.639757 TCATTCATTTTGCTTCGTATGTGG 58.360 37.500 0.00 0.00 0.00 4.17
3630 4076 5.182950 TCATTCATTTTGCTTCGTATGTGGT 59.817 36.000 0.00 0.00 0.00 4.16
3631 4077 4.678509 TCATTTTGCTTCGTATGTGGTC 57.321 40.909 0.00 0.00 0.00 4.02
3632 4078 4.323417 TCATTTTGCTTCGTATGTGGTCT 58.677 39.130 0.00 0.00 0.00 3.85
3633 4079 5.483811 TCATTTTGCTTCGTATGTGGTCTA 58.516 37.500 0.00 0.00 0.00 2.59
3634 4080 6.112734 TCATTTTGCTTCGTATGTGGTCTAT 58.887 36.000 0.00 0.00 0.00 1.98
3635 4081 7.269316 TCATTTTGCTTCGTATGTGGTCTATA 58.731 34.615 0.00 0.00 0.00 1.31
3636 4082 7.438160 TCATTTTGCTTCGTATGTGGTCTATAG 59.562 37.037 0.00 0.00 0.00 1.31
3637 4083 5.847111 TTGCTTCGTATGTGGTCTATAGT 57.153 39.130 0.00 0.00 0.00 2.12
3638 4084 5.183014 TGCTTCGTATGTGGTCTATAGTG 57.817 43.478 0.00 0.00 0.00 2.74
3639 4085 4.885325 TGCTTCGTATGTGGTCTATAGTGA 59.115 41.667 0.00 0.00 0.00 3.41
3640 4086 5.358725 TGCTTCGTATGTGGTCTATAGTGAA 59.641 40.000 0.00 0.00 0.00 3.18
3641 4087 6.127563 TGCTTCGTATGTGGTCTATAGTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
3642 4088 6.924060 GCTTCGTATGTGGTCTATAGTGAAAT 59.076 38.462 0.00 0.00 0.00 2.17
3643 4089 7.115095 GCTTCGTATGTGGTCTATAGTGAAATC 59.885 40.741 0.00 0.00 0.00 2.17
3644 4090 7.818997 TCGTATGTGGTCTATAGTGAAATCT 57.181 36.000 0.00 0.00 0.00 2.40
3645 4091 7.872881 TCGTATGTGGTCTATAGTGAAATCTC 58.127 38.462 0.00 0.00 0.00 2.75
3646 4092 7.720074 TCGTATGTGGTCTATAGTGAAATCTCT 59.280 37.037 0.00 0.00 0.00 3.10
3647 4093 8.018520 CGTATGTGGTCTATAGTGAAATCTCTC 58.981 40.741 0.00 0.00 0.00 3.20
3648 4094 6.716934 TGTGGTCTATAGTGAAATCTCTCC 57.283 41.667 0.00 0.00 0.00 3.71
3649 4095 6.194967 TGTGGTCTATAGTGAAATCTCTCCA 58.805 40.000 0.00 0.00 0.00 3.86
3650 4096 6.667848 TGTGGTCTATAGTGAAATCTCTCCAA 59.332 38.462 0.00 0.00 0.00 3.53
3651 4097 7.180229 TGTGGTCTATAGTGAAATCTCTCCAAA 59.820 37.037 0.00 0.00 0.00 3.28
3652 4098 7.708752 GTGGTCTATAGTGAAATCTCTCCAAAG 59.291 40.741 0.00 0.00 0.00 2.77
3653 4099 7.619698 TGGTCTATAGTGAAATCTCTCCAAAGA 59.380 37.037 0.00 0.00 0.00 2.52
3654 4100 7.923878 GGTCTATAGTGAAATCTCTCCAAAGAC 59.076 40.741 0.00 0.00 0.00 3.01
3655 4101 8.691797 GTCTATAGTGAAATCTCTCCAAAGACT 58.308 37.037 0.00 0.00 0.00 3.24
3656 4102 9.261035 TCTATAGTGAAATCTCTCCAAAGACTT 57.739 33.333 0.00 0.00 0.00 3.01
3669 4115 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
3670 4116 8.202137 TCTCCAAAGACTTATATTTAGGAACGG 58.798 37.037 0.00 0.00 0.00 4.44
3671 4117 8.081517 TCCAAAGACTTATATTTAGGAACGGA 57.918 34.615 0.00 0.00 0.00 4.69
3672 4118 8.202137 TCCAAAGACTTATATTTAGGAACGGAG 58.798 37.037 0.00 0.00 0.00 4.63
3673 4119 7.441458 CCAAAGACTTATATTTAGGAACGGAGG 59.559 40.741 0.00 0.00 0.00 4.30
3674 4120 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3675 4121 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3676 4122 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3686 4132 3.703052 GGAACGGAGGGAGTATTAGTCAA 59.297 47.826 1.13 0.00 0.00 3.18
3721 4167 5.760743 GGATTCTGGTACTGCCTATTTCTTC 59.239 44.000 0.00 0.00 38.35 2.87
3733 4179 5.222254 TGCCTATTTCTTCCTTACCTTTGGT 60.222 40.000 0.00 0.00 40.16 3.67
3760 4206 5.521516 GATGATAGCACATCATTACGGTG 57.478 43.478 13.27 0.00 44.00 4.94
3793 4239 7.037438 ACCTGATTTGACATTGTGATTTATGC 58.963 34.615 0.00 0.00 0.00 3.14
3864 4310 6.073711 GCGGTTATCCTAGCTATTTTCTTGTC 60.074 42.308 0.00 0.00 0.00 3.18
4017 4473 0.179040 TCGTTTGTGTTCCCCTCACC 60.179 55.000 0.00 0.00 35.25 4.02
4123 4584 4.842531 TCATCCTCTGCAACCTATCAAA 57.157 40.909 0.00 0.00 0.00 2.69
4124 4585 5.178096 TCATCCTCTGCAACCTATCAAAA 57.822 39.130 0.00 0.00 0.00 2.44
4125 4586 5.759059 TCATCCTCTGCAACCTATCAAAAT 58.241 37.500 0.00 0.00 0.00 1.82
4141 4602 7.278424 CCTATCAAAATTTTACCATGCCAAGTG 59.722 37.037 2.44 0.00 0.00 3.16
4198 4663 7.647715 TGCTTTTATCTTTTCTTTTTCTGACGG 59.352 33.333 0.00 0.00 0.00 4.79
4257 4725 7.214467 TGACAGGATTAAGAAACCATTGTTC 57.786 36.000 0.00 0.00 32.15 3.18
4301 4770 8.768501 AGTAGTGGATCTCAGACATAATTACA 57.231 34.615 0.00 0.00 0.00 2.41
4331 4800 1.541588 CAAGGCACCTGCTTTTCTACC 59.458 52.381 0.00 0.00 38.33 3.18
4339 4808 1.223763 GCTTTTCTACCCCCTCCGG 59.776 63.158 0.00 0.00 0.00 5.14
4340 4809 1.269703 GCTTTTCTACCCCCTCCGGA 61.270 60.000 2.93 2.93 0.00 5.14
4341 4810 0.831307 CTTTTCTACCCCCTCCGGAG 59.169 60.000 25.36 25.36 0.00 4.63
4342 4811 1.269703 TTTTCTACCCCCTCCGGAGC 61.270 60.000 26.87 0.00 0.00 4.70
4343 4812 3.691297 TTCTACCCCCTCCGGAGCC 62.691 68.421 26.87 0.00 0.00 4.70
4344 4813 4.159108 CTACCCCCTCCGGAGCCT 62.159 72.222 26.87 9.58 0.00 4.58
4345 4814 4.153330 TACCCCCTCCGGAGCCTC 62.153 72.222 26.87 0.00 0.00 4.70
4348 4817 4.787280 CCCCTCCGGAGCCTCTGT 62.787 72.222 26.87 0.00 0.00 3.41
4350 4819 2.128507 CCCTCCGGAGCCTCTGTAC 61.129 68.421 26.87 0.00 0.00 2.90
4351 4820 1.379977 CCTCCGGAGCCTCTGTACA 60.380 63.158 26.87 0.00 0.00 2.90
4352 4821 0.970937 CCTCCGGAGCCTCTGTACAA 60.971 60.000 26.87 0.00 0.00 2.41
4353 4822 1.115467 CTCCGGAGCCTCTGTACAAT 58.885 55.000 20.67 0.00 0.00 2.71
4354 4823 0.824109 TCCGGAGCCTCTGTACAATG 59.176 55.000 0.00 0.00 0.00 2.82
4355 4824 0.537188 CCGGAGCCTCTGTACAATGT 59.463 55.000 0.00 0.00 0.00 2.71
4356 4825 1.066143 CCGGAGCCTCTGTACAATGTT 60.066 52.381 0.00 0.00 0.00 2.71
4357 4826 2.615493 CCGGAGCCTCTGTACAATGTTT 60.615 50.000 0.00 0.00 0.00 2.83
4358 4827 2.673368 CGGAGCCTCTGTACAATGTTTC 59.327 50.000 0.00 0.00 0.00 2.78
4359 4828 3.010420 GGAGCCTCTGTACAATGTTTCC 58.990 50.000 0.00 0.00 0.00 3.13
4360 4829 3.307762 GGAGCCTCTGTACAATGTTTCCT 60.308 47.826 0.00 0.00 0.00 3.36
4361 4830 3.935828 GAGCCTCTGTACAATGTTTCCTC 59.064 47.826 0.00 0.00 0.00 3.71
4362 4831 3.327757 AGCCTCTGTACAATGTTTCCTCA 59.672 43.478 0.00 0.00 0.00 3.86
4363 4832 4.018960 AGCCTCTGTACAATGTTTCCTCAT 60.019 41.667 0.00 0.00 0.00 2.90
4364 4833 5.189736 AGCCTCTGTACAATGTTTCCTCATA 59.810 40.000 0.00 0.00 0.00 2.15
4365 4834 5.880332 GCCTCTGTACAATGTTTCCTCATAA 59.120 40.000 0.00 0.00 0.00 1.90
4366 4835 6.374333 GCCTCTGTACAATGTTTCCTCATAAA 59.626 38.462 0.00 0.00 0.00 1.40
4367 4836 7.067494 GCCTCTGTACAATGTTTCCTCATAAAT 59.933 37.037 0.00 0.00 0.00 1.40
4368 4837 8.960591 CCTCTGTACAATGTTTCCTCATAAATT 58.039 33.333 0.00 0.00 0.00 1.82
4369 4838 9.778993 CTCTGTACAATGTTTCCTCATAAATTG 57.221 33.333 0.00 0.00 0.00 2.32
4370 4839 9.295825 TCTGTACAATGTTTCCTCATAAATTGT 57.704 29.630 0.00 0.00 0.00 2.71
4382 4851 5.349817 CCTCATAAATTGTATAGGAGCTGCG 59.650 44.000 0.00 0.00 31.57 5.18
4393 4862 5.931441 ATAGGAGCTGCGTCAATTAATTC 57.069 39.130 0.00 0.00 0.00 2.17
4395 4864 2.351726 GGAGCTGCGTCAATTAATTCGT 59.648 45.455 10.03 0.00 0.00 3.85
4430 4899 5.047943 GCACTAGACTTCAGAACCACTAGAA 60.048 44.000 15.03 0.00 33.77 2.10
4433 4905 7.757624 CACTAGACTTCAGAACCACTAGAATTC 59.242 40.741 15.03 0.00 33.77 2.17
4435 4907 6.930731 AGACTTCAGAACCACTAGAATTCTC 58.069 40.000 12.24 0.00 30.17 2.87
4469 4941 9.740239 AATTTTGAAATCATGGATATGAACTCG 57.260 29.630 0.00 0.00 45.82 4.18
4470 4942 8.504812 TTTTGAAATCATGGATATGAACTCGA 57.495 30.769 0.00 0.00 45.82 4.04
4471 4943 7.719778 TTGAAATCATGGATATGAACTCGAG 57.280 36.000 11.84 11.84 45.82 4.04
4472 4944 6.226052 TGAAATCATGGATATGAACTCGAGG 58.774 40.000 18.41 0.00 45.82 4.63
4519 4992 9.174166 ACCACAAAACCATACTCTGAATAATAC 57.826 33.333 0.00 0.00 0.00 1.89
4534 5007 9.102757 TCTGAATAATACTGAGACTTTCAATGC 57.897 33.333 0.00 0.00 34.81 3.56
4554 5030 2.032675 GCCTTTCATACTGCTAAGCTGC 59.967 50.000 0.00 0.00 0.00 5.25
4556 5032 3.273434 CTTTCATACTGCTAAGCTGCCA 58.727 45.455 0.00 0.00 0.00 4.92
4562 5038 1.556911 ACTGCTAAGCTGCCATGTACT 59.443 47.619 0.00 0.00 0.00 2.73
4563 5039 2.208431 CTGCTAAGCTGCCATGTACTC 58.792 52.381 0.00 0.00 0.00 2.59
4564 5040 1.833630 TGCTAAGCTGCCATGTACTCT 59.166 47.619 0.00 0.00 0.00 3.24
4565 5041 2.159043 TGCTAAGCTGCCATGTACTCTC 60.159 50.000 0.00 0.00 0.00 3.20
4567 5043 2.977772 AAGCTGCCATGTACTCTCTC 57.022 50.000 0.00 0.00 0.00 3.20
4568 5044 1.118838 AGCTGCCATGTACTCTCTCC 58.881 55.000 0.00 0.00 0.00 3.71
4569 5045 0.249238 GCTGCCATGTACTCTCTCCG 60.249 60.000 0.00 0.00 0.00 4.63
4571 5047 2.298610 CTGCCATGTACTCTCTCCGTA 58.701 52.381 0.00 0.00 0.00 4.02
4573 5049 3.093814 TGCCATGTACTCTCTCCGTAAA 58.906 45.455 0.00 0.00 0.00 2.01
4574 5050 3.130516 TGCCATGTACTCTCTCCGTAAAG 59.869 47.826 0.00 0.00 0.00 1.85
4577 5053 5.163581 GCCATGTACTCTCTCCGTAAAGTAA 60.164 44.000 0.00 0.00 0.00 2.24
4578 5054 6.626623 GCCATGTACTCTCTCCGTAAAGTAAA 60.627 42.308 0.00 0.00 0.00 2.01
4579 5055 6.973474 CCATGTACTCTCTCCGTAAAGTAAAG 59.027 42.308 0.00 0.00 0.00 1.85
4580 5056 7.362747 CCATGTACTCTCTCCGTAAAGTAAAGT 60.363 40.741 0.00 0.00 0.00 2.66
4581 5057 8.671921 CATGTACTCTCTCCGTAAAGTAAAGTA 58.328 37.037 0.00 0.00 0.00 2.24
4582 5058 8.261492 TGTACTCTCTCCGTAAAGTAAAGTAG 57.739 38.462 0.00 0.00 0.00 2.57
4583 5059 7.880195 TGTACTCTCTCCGTAAAGTAAAGTAGT 59.120 37.037 0.00 0.00 0.00 2.73
4584 5060 7.143514 ACTCTCTCCGTAAAGTAAAGTAGTG 57.856 40.000 0.00 0.00 0.00 2.74
4585 5061 6.150809 ACTCTCTCCGTAAAGTAAAGTAGTGG 59.849 42.308 0.00 0.00 0.00 4.00
4586 5062 6.006449 TCTCTCCGTAAAGTAAAGTAGTGGT 58.994 40.000 0.00 0.00 0.00 4.16
4587 5063 6.150140 TCTCTCCGTAAAGTAAAGTAGTGGTC 59.850 42.308 0.00 0.00 0.00 4.02
4588 5064 6.006449 TCTCCGTAAAGTAAAGTAGTGGTCT 58.994 40.000 0.00 0.00 0.00 3.85
4589 5065 7.168219 TCTCCGTAAAGTAAAGTAGTGGTCTA 58.832 38.462 0.00 0.00 0.00 2.59
4590 5066 7.665559 TCTCCGTAAAGTAAAGTAGTGGTCTAA 59.334 37.037 0.00 0.00 0.00 2.10
4591 5067 8.177119 TCCGTAAAGTAAAGTAGTGGTCTAAA 57.823 34.615 0.00 0.00 0.00 1.85
4592 5068 8.082242 TCCGTAAAGTAAAGTAGTGGTCTAAAC 58.918 37.037 0.00 0.00 0.00 2.01
4593 5069 7.867403 CCGTAAAGTAAAGTAGTGGTCTAAACA 59.133 37.037 0.00 0.00 0.00 2.83
4594 5070 8.694394 CGTAAAGTAAAGTAGTGGTCTAAACAC 58.306 37.037 0.00 0.00 39.10 3.32
4596 5072 8.883954 AAAGTAAAGTAGTGGTCTAAACACTC 57.116 34.615 0.00 0.00 45.50 3.51
4597 5073 7.836479 AGTAAAGTAGTGGTCTAAACACTCT 57.164 36.000 0.00 0.00 45.50 3.24
4598 5074 8.247666 AGTAAAGTAGTGGTCTAAACACTCTT 57.752 34.615 0.00 3.09 45.50 2.85
4599 5075 9.359653 AGTAAAGTAGTGGTCTAAACACTCTTA 57.640 33.333 0.00 0.00 45.50 2.10
4656 5132 1.780919 ACTAGGGGACTGCAAAAGGTT 59.219 47.619 0.00 0.00 43.88 3.50
4658 5134 3.396611 ACTAGGGGACTGCAAAAGGTTAA 59.603 43.478 0.00 0.00 43.88 2.01
4686 5168 5.179045 CAGCATGGTCAGATGATTTTACC 57.821 43.478 0.00 0.00 0.00 2.85
4811 5299 7.064134 AGCAATCGTATCTTAAACAATCGTTCA 59.936 33.333 0.00 0.00 32.91 3.18
4814 5302 8.873215 ATCGTATCTTAAACAATCGTTCATCT 57.127 30.769 0.00 0.00 32.91 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.754193 TGGTTTTAGCCTTTTAGGTGAAATG 58.246 36.000 0.00 0.00 37.80 2.32
5 6 6.740122 GCATGGTTTTAGCCTTTTAGGTGAAA 60.740 38.462 0.00 0.00 37.80 2.69
6 7 5.279256 GCATGGTTTTAGCCTTTTAGGTGAA 60.279 40.000 0.00 0.00 37.80 3.18
7 8 4.219725 GCATGGTTTTAGCCTTTTAGGTGA 59.780 41.667 0.00 0.00 37.80 4.02
8 9 4.494484 GCATGGTTTTAGCCTTTTAGGTG 58.506 43.478 0.00 0.00 37.80 4.00
9 10 3.513912 GGCATGGTTTTAGCCTTTTAGGT 59.486 43.478 0.00 0.00 44.92 3.08
10 11 4.123497 GGCATGGTTTTAGCCTTTTAGG 57.877 45.455 0.00 0.00 44.92 2.69
18 19 6.568869 TGTATAATGTTGGCATGGTTTTAGC 58.431 36.000 0.00 0.00 35.15 3.09
32 33 3.541632 CCCGCTTCACCTGTATAATGTT 58.458 45.455 0.00 0.00 0.00 2.71
51 52 4.095483 GCATGCACATATACTCATAAGCCC 59.905 45.833 14.21 0.00 0.00 5.19
78 79 4.248859 ACACAGTACAATCACAGATGCTC 58.751 43.478 0.00 0.00 0.00 4.26
79 80 4.277515 ACACAGTACAATCACAGATGCT 57.722 40.909 0.00 0.00 0.00 3.79
80 81 5.362556 AAACACAGTACAATCACAGATGC 57.637 39.130 0.00 0.00 0.00 3.91
81 82 7.889589 TCTAAACACAGTACAATCACAGATG 57.110 36.000 0.00 0.00 0.00 2.90
82 83 8.902540 TTTCTAAACACAGTACAATCACAGAT 57.097 30.769 0.00 0.00 0.00 2.90
83 84 8.725405 TTTTCTAAACACAGTACAATCACAGA 57.275 30.769 0.00 0.00 0.00 3.41
84 85 9.950680 AATTTTCTAAACACAGTACAATCACAG 57.049 29.630 0.00 0.00 0.00 3.66
130 132 9.010029 TGCGTTATTTTTATTTCTCTCCTCTTT 57.990 29.630 0.00 0.00 0.00 2.52
139 141 9.758651 GGGGAATTATGCGTTATTTTTATTTCT 57.241 29.630 0.00 0.00 0.00 2.52
140 142 9.535878 TGGGGAATTATGCGTTATTTTTATTTC 57.464 29.630 0.00 0.00 0.00 2.17
141 143 9.892130 TTGGGGAATTATGCGTTATTTTTATTT 57.108 25.926 0.00 0.00 0.00 1.40
144 146 8.294954 TCTTGGGGAATTATGCGTTATTTTTA 57.705 30.769 0.00 0.00 0.00 1.52
147 149 6.783708 TTCTTGGGGAATTATGCGTTATTT 57.216 33.333 0.00 0.00 0.00 1.40
150 152 5.946972 TCTTTTCTTGGGGAATTATGCGTTA 59.053 36.000 0.00 0.00 33.53 3.18
162 164 5.123227 GTTTTCCCTTTTCTTTTCTTGGGG 58.877 41.667 0.00 0.00 35.56 4.96
173 175 2.296190 AGTCATGCGGTTTTCCCTTTTC 59.704 45.455 0.00 0.00 36.42 2.29
175 177 1.613437 CAGTCATGCGGTTTTCCCTTT 59.387 47.619 0.00 0.00 36.42 3.11
179 181 0.521735 GGTCAGTCATGCGGTTTTCC 59.478 55.000 0.00 0.00 0.00 3.13
180 182 0.165944 CGGTCAGTCATGCGGTTTTC 59.834 55.000 0.00 0.00 0.00 2.29
181 183 0.250124 TCGGTCAGTCATGCGGTTTT 60.250 50.000 0.00 0.00 0.00 2.43
185 187 1.592669 GGATCGGTCAGTCATGCGG 60.593 63.158 0.00 0.00 0.00 5.69
186 188 0.596083 GAGGATCGGTCAGTCATGCG 60.596 60.000 0.00 0.00 0.00 4.73
187 189 0.461548 TGAGGATCGGTCAGTCATGC 59.538 55.000 0.00 0.00 38.61 4.06
188 190 2.027385 TCTGAGGATCGGTCAGTCATG 58.973 52.381 18.42 0.00 43.66 3.07
189 191 2.443958 TCTGAGGATCGGTCAGTCAT 57.556 50.000 18.42 0.00 43.66 3.06
190 192 2.215942 TTCTGAGGATCGGTCAGTCA 57.784 50.000 18.42 0.00 43.66 3.41
191 193 3.118956 ACATTTCTGAGGATCGGTCAGTC 60.119 47.826 18.42 0.00 43.66 3.51
193 195 3.118992 TCACATTTCTGAGGATCGGTCAG 60.119 47.826 14.72 14.72 43.66 3.51
212 215 0.459237 CTCATCTGTGGTCGCCTCAC 60.459 60.000 0.00 0.00 35.82 3.51
275 278 2.734492 CGTCTACTAGTCCTTTTGCGGG 60.734 54.545 0.00 0.00 0.00 6.13
291 294 3.740397 CGGTGGTGGACGCGTCTA 61.740 66.667 35.50 29.45 0.00 2.59
302 305 2.520020 TCTGTCGTGGACGGTGGT 60.520 61.111 4.65 0.00 39.68 4.16
383 394 2.538512 GAAACGGAAGGGGAGGAGGC 62.539 65.000 0.00 0.00 0.00 4.70
414 425 4.968311 AGGGTTTCCGTCCGGGGT 62.968 66.667 0.00 0.00 38.33 4.95
415 426 4.091939 GAGGGTTTCCGTCCGGGG 62.092 72.222 0.00 0.00 38.33 5.73
419 430 3.244764 GGAAAGAGGGTTTCCGTCC 57.755 57.895 0.89 0.00 39.00 4.79
657 991 0.250727 CCCTTTTCTCCAGGCGAACA 60.251 55.000 0.00 0.00 0.00 3.18
716 1050 3.321682 TCCGGCTCTACTCTACTCTAGTC 59.678 52.174 0.00 0.00 0.00 2.59
763 1097 1.012841 GCAAGAAGGAATCTCGGCTG 58.987 55.000 0.00 0.00 37.42 4.85
797 1168 2.265182 AACACCAACCAATCCGCCG 61.265 57.895 0.00 0.00 0.00 6.46
883 1254 2.266055 CTTCCTCCTCACCGGCAC 59.734 66.667 0.00 0.00 0.00 5.01
884 1255 3.003173 CCTTCCTCCTCACCGGCA 61.003 66.667 0.00 0.00 0.00 5.69
886 1257 2.685380 AGCCTTCCTCCTCACCGG 60.685 66.667 0.00 0.00 0.00 5.28
887 1258 2.581354 CAGCCTTCCTCCTCACCG 59.419 66.667 0.00 0.00 0.00 4.94
888 1259 2.270527 GCAGCCTTCCTCCTCACC 59.729 66.667 0.00 0.00 0.00 4.02
889 1260 2.129555 TTGGCAGCCTTCCTCCTCAC 62.130 60.000 14.15 0.00 0.00 3.51
890 1261 1.845627 CTTGGCAGCCTTCCTCCTCA 61.846 60.000 14.15 0.00 0.00 3.86
891 1262 1.077858 CTTGGCAGCCTTCCTCCTC 60.078 63.158 14.15 0.00 0.00 3.71
892 1263 0.918310 ATCTTGGCAGCCTTCCTCCT 60.918 55.000 14.15 0.00 0.00 3.69
893 1264 0.033699 AATCTTGGCAGCCTTCCTCC 60.034 55.000 14.15 0.00 0.00 4.30
894 1265 1.101331 CAATCTTGGCAGCCTTCCTC 58.899 55.000 14.15 0.00 0.00 3.71
895 1266 0.969409 GCAATCTTGGCAGCCTTCCT 60.969 55.000 14.15 0.00 0.00 3.36
896 1267 0.969409 AGCAATCTTGGCAGCCTTCC 60.969 55.000 14.15 0.00 0.00 3.46
903 1274 2.045045 CCCCGAGCAATCTTGGCA 60.045 61.111 0.00 0.00 41.72 4.92
1288 1661 3.492102 AAGCCTTGCTCAAGTAGACAA 57.508 42.857 8.60 0.00 38.25 3.18
1296 1669 1.206610 TGTTGCAAAAGCCTTGCTCAA 59.793 42.857 18.80 6.32 45.13 3.02
1332 1705 4.576053 TCAAATCTCAGTTTGTGACACCAG 59.424 41.667 2.45 0.00 39.50 4.00
1419 1792 4.074970 TCTCCCGTAGTTTATCCCGTATC 58.925 47.826 0.00 0.00 0.00 2.24
1462 1835 2.122769 TCCACCACCTTGTCCGGA 60.123 61.111 0.00 0.00 0.00 5.14
1678 2051 1.144691 TCCCCACAGTGATTCCAACA 58.855 50.000 0.62 0.00 0.00 3.33
1957 2330 1.483415 TGCCCCGGATCAGTTAAGTAC 59.517 52.381 0.73 0.00 0.00 2.73
2018 2391 6.144175 GCAGACTAGTATTCGGATCAACTAC 58.856 44.000 0.00 0.00 0.00 2.73
2174 2547 3.128242 GTCCTTGCATTCTCAACTGATGG 59.872 47.826 0.00 0.00 0.00 3.51
2542 2939 7.550551 CACCTCTAATCTGCTTTGAAGTTCATA 59.449 37.037 6.36 0.68 0.00 2.15
2653 3050 4.222810 GGCCCCTTTTGTTAAAGACATCAT 59.777 41.667 0.00 0.00 42.78 2.45
2654 3051 3.576550 GGCCCCTTTTGTTAAAGACATCA 59.423 43.478 0.00 0.00 42.78 3.07
2655 3052 3.056107 GGGCCCCTTTTGTTAAAGACATC 60.056 47.826 12.23 0.00 42.78 3.06
2657 3054 2.090999 AGGGCCCCTTTTGTTAAAGACA 60.091 45.455 21.43 0.00 42.78 3.41
2658 3055 2.605257 AGGGCCCCTTTTGTTAAAGAC 58.395 47.619 21.43 0.00 42.78 3.01
2697 3094 1.893137 GTGCCATGATCCATGATGCAT 59.107 47.619 0.00 0.00 43.81 3.96
2809 3206 2.121538 GCCTTGAATCCTTCCGCCC 61.122 63.158 0.00 0.00 0.00 6.13
2837 3234 3.316573 GAACCCCAGCAGACCTCGG 62.317 68.421 0.00 0.00 0.00 4.63
2888 3285 3.426615 TGGATAAGGACGGCAAACAATT 58.573 40.909 0.00 0.00 0.00 2.32
2935 3332 2.303175 GACAGGCCTTGGTTGTTAACA 58.697 47.619 0.00 3.59 0.00 2.41
2942 3339 0.258774 AACACTGACAGGCCTTGGTT 59.741 50.000 0.00 0.00 0.00 3.67
2967 3364 2.286713 TGTTTGCCGAAGAACATGTTCG 60.287 45.455 28.18 19.64 45.12 3.95
2972 3369 2.270352 TCCTGTTTGCCGAAGAACAT 57.730 45.000 0.00 0.00 35.44 2.71
2980 3377 5.296780 ACATTAGTATCAATCCTGTTTGCCG 59.703 40.000 0.00 0.00 0.00 5.69
2995 3392 8.140112 AGTTCTTCTCTGGACAACATTAGTAT 57.860 34.615 0.00 0.00 0.00 2.12
2999 3396 6.183361 TGGAAGTTCTTCTCTGGACAACATTA 60.183 38.462 11.53 0.00 0.00 1.90
3023 3420 7.601073 TCTGTTGTCTCTATTTAGTGCAATG 57.399 36.000 0.00 0.00 0.00 2.82
3028 3458 7.038048 TCAGCATCTGTTGTCTCTATTTAGTG 58.962 38.462 0.00 0.00 32.61 2.74
3039 3469 1.805869 ACTGCTCAGCATCTGTTGTC 58.194 50.000 0.00 0.00 38.13 3.18
3041 3471 4.959596 ATTTACTGCTCAGCATCTGTTG 57.040 40.909 0.00 0.00 38.13 3.33
3088 3522 9.334693 GCAAGTTAATTTCTTGTCATTGTCTAG 57.665 33.333 17.91 0.00 42.67 2.43
3089 3523 8.845227 TGCAAGTTAATTTCTTGTCATTGTCTA 58.155 29.630 17.91 0.31 42.67 2.59
3090 3524 7.715657 TGCAAGTTAATTTCTTGTCATTGTCT 58.284 30.769 17.91 0.00 42.67 3.41
3091 3525 7.928908 TGCAAGTTAATTTCTTGTCATTGTC 57.071 32.000 17.91 6.41 42.67 3.18
3092 3526 7.095523 GCATGCAAGTTAATTTCTTGTCATTGT 60.096 33.333 14.21 6.02 42.67 2.71
3093 3527 7.117236 AGCATGCAAGTTAATTTCTTGTCATTG 59.883 33.333 21.98 15.62 42.67 2.82
3115 3549 7.938715 TGGCATTTAAATTGTTTTGAAAGCAT 58.061 26.923 0.00 0.00 36.99 3.79
3117 3551 7.416817 ACTGGCATTTAAATTGTTTTGAAAGC 58.583 30.769 0.00 0.00 35.51 3.51
3121 3555 7.731054 ACCTACTGGCATTTAAATTGTTTTGA 58.269 30.769 0.00 0.00 36.63 2.69
3122 3556 7.961325 ACCTACTGGCATTTAAATTGTTTTG 57.039 32.000 0.00 0.00 36.63 2.44
3243 3688 3.746492 ACCTTCGAAGAAAGGAATTGACG 59.254 43.478 26.61 7.16 45.90 4.35
3267 3712 4.037803 TGCACTGCACTCATAACAACAAAT 59.962 37.500 0.00 0.00 31.71 2.32
3284 3729 5.991328 ATACCTCGTTCAATTATGCACTG 57.009 39.130 0.00 0.00 0.00 3.66
3331 3776 1.347707 TGCAGGGGAAGTGTTACAGAG 59.652 52.381 0.00 0.00 0.00 3.35
3335 3780 5.914898 ATTATTTGCAGGGGAAGTGTTAC 57.085 39.130 0.00 0.00 0.00 2.50
3372 3817 6.321181 GCCAATTAATCTAGGATGTTTGGTCA 59.679 38.462 12.90 0.00 35.82 4.02
3373 3818 6.547510 AGCCAATTAATCTAGGATGTTTGGTC 59.452 38.462 12.90 7.90 35.82 4.02
3381 3826 4.351111 ACCGGAAGCCAATTAATCTAGGAT 59.649 41.667 9.46 0.00 0.00 3.24
3389 3834 4.637091 GCTAAAGTACCGGAAGCCAATTAA 59.363 41.667 9.46 0.00 0.00 1.40
3393 3838 2.103537 GCTAAAGTACCGGAAGCCAA 57.896 50.000 9.46 0.00 0.00 4.52
3394 3839 3.846955 GCTAAAGTACCGGAAGCCA 57.153 52.632 9.46 0.00 0.00 4.75
3402 3847 6.772360 ACTGTTCTAGTAGGCTAAAGTACC 57.228 41.667 0.00 0.00 38.04 3.34
3424 3869 8.682710 TGATTTTAATGAGTATAAGTGGCCAAC 58.317 33.333 7.24 0.28 0.00 3.77
3427 3872 7.502561 AGGTGATTTTAATGAGTATAAGTGGCC 59.497 37.037 0.00 0.00 0.00 5.36
3437 3882 4.941873 GGAACCGAGGTGATTTTAATGAGT 59.058 41.667 0.00 0.00 0.00 3.41
3438 3883 4.034048 CGGAACCGAGGTGATTTTAATGAG 59.966 45.833 7.53 0.00 42.83 2.90
3517 3963 7.300658 ACTTATATTTAGGAACGGAGGGACTA 58.699 38.462 0.00 0.00 41.55 2.59
3519 3965 6.267242 AGACTTATATTTAGGAACGGAGGGAC 59.733 42.308 0.00 0.00 0.00 4.46
3520 3966 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3521 3967 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3522 3968 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3523 3969 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3549 3995 8.353684 CCGTATGTGACTCATAGTAAAATCTCT 58.646 37.037 0.00 0.00 39.36 3.10
3550 3996 8.350722 TCCGTATGTGACTCATAGTAAAATCTC 58.649 37.037 0.00 0.00 39.36 2.75
3551 3997 8.234136 TCCGTATGTGACTCATAGTAAAATCT 57.766 34.615 0.00 0.00 39.36 2.40
3552 3998 8.916654 CATCCGTATGTGACTCATAGTAAAATC 58.083 37.037 0.00 0.00 39.36 2.17
3553 3999 8.421784 ACATCCGTATGTGACTCATAGTAAAAT 58.578 33.333 0.00 0.00 44.79 1.82
3554 4000 7.778083 ACATCCGTATGTGACTCATAGTAAAA 58.222 34.615 0.00 0.00 44.79 1.52
3555 4001 7.342769 ACATCCGTATGTGACTCATAGTAAA 57.657 36.000 0.00 0.00 44.79 2.01
3556 4002 6.954487 ACATCCGTATGTGACTCATAGTAA 57.046 37.500 0.00 0.00 44.79 2.24
3557 4003 9.901172 ATATACATCCGTATGTGACTCATAGTA 57.099 33.333 3.56 0.00 45.99 1.82
3558 4004 8.809468 ATATACATCCGTATGTGACTCATAGT 57.191 34.615 3.56 0.00 45.99 2.12
3561 4007 9.634021 ATCTATATACATCCGTATGTGACTCAT 57.366 33.333 3.56 0.00 45.99 2.90
3562 4008 8.893727 CATCTATATACATCCGTATGTGACTCA 58.106 37.037 3.56 0.00 45.99 3.41
3563 4009 7.858382 GCATCTATATACATCCGTATGTGACTC 59.142 40.741 3.56 0.00 45.99 3.36
3564 4010 7.339466 TGCATCTATATACATCCGTATGTGACT 59.661 37.037 3.56 0.00 45.99 3.41
3565 4011 7.480810 TGCATCTATATACATCCGTATGTGAC 58.519 38.462 3.56 0.00 45.99 3.67
3566 4012 7.639113 TGCATCTATATACATCCGTATGTGA 57.361 36.000 3.56 0.00 45.99 3.58
3567 4013 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3572 4018 9.809096 CTCTAAAATGCATCTATATACATCCGT 57.191 33.333 0.00 0.00 0.00 4.69
3573 4019 9.809096 ACTCTAAAATGCATCTATATACATCCG 57.191 33.333 0.00 0.00 0.00 4.18
3584 4030 9.624373 AATGAATCTACACTCTAAAATGCATCT 57.376 29.630 0.00 0.00 0.00 2.90
3585 4031 9.875675 GAATGAATCTACACTCTAAAATGCATC 57.124 33.333 0.00 0.00 0.00 3.91
3586 4032 9.399797 TGAATGAATCTACACTCTAAAATGCAT 57.600 29.630 0.00 0.00 0.00 3.96
3587 4033 8.791327 TGAATGAATCTACACTCTAAAATGCA 57.209 30.769 0.00 0.00 0.00 3.96
3593 4039 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
3594 4040 9.453572 AAGCAAAATGAATGAATCTACACTCTA 57.546 29.630 0.00 0.00 0.00 2.43
3595 4041 7.934855 AGCAAAATGAATGAATCTACACTCT 57.065 32.000 0.00 0.00 0.00 3.24
3596 4042 7.427606 CGAAGCAAAATGAATGAATCTACACTC 59.572 37.037 0.00 0.00 0.00 3.51
3597 4043 7.094634 ACGAAGCAAAATGAATGAATCTACACT 60.095 33.333 0.00 0.00 0.00 3.55
3598 4044 7.023575 ACGAAGCAAAATGAATGAATCTACAC 58.976 34.615 0.00 0.00 0.00 2.90
3599 4045 7.144722 ACGAAGCAAAATGAATGAATCTACA 57.855 32.000 0.00 0.00 0.00 2.74
3600 4046 9.162793 CATACGAAGCAAAATGAATGAATCTAC 57.837 33.333 0.00 0.00 0.00 2.59
3601 4047 8.892723 ACATACGAAGCAAAATGAATGAATCTA 58.107 29.630 0.00 0.00 0.00 1.98
3602 4048 7.699391 CACATACGAAGCAAAATGAATGAATCT 59.301 33.333 0.00 0.00 0.00 2.40
3603 4049 7.043854 CCACATACGAAGCAAAATGAATGAATC 60.044 37.037 0.00 0.00 0.00 2.52
3604 4050 6.753279 CCACATACGAAGCAAAATGAATGAAT 59.247 34.615 0.00 0.00 0.00 2.57
3605 4051 6.092092 CCACATACGAAGCAAAATGAATGAA 58.908 36.000 0.00 0.00 0.00 2.57
3606 4052 5.182950 ACCACATACGAAGCAAAATGAATGA 59.817 36.000 0.00 0.00 0.00 2.57
3607 4053 5.401550 ACCACATACGAAGCAAAATGAATG 58.598 37.500 0.00 0.00 0.00 2.67
3608 4054 5.415701 AGACCACATACGAAGCAAAATGAAT 59.584 36.000 0.00 0.00 0.00 2.57
3609 4055 4.759693 AGACCACATACGAAGCAAAATGAA 59.240 37.500 0.00 0.00 0.00 2.57
3610 4056 4.323417 AGACCACATACGAAGCAAAATGA 58.677 39.130 0.00 0.00 0.00 2.57
3611 4057 4.685169 AGACCACATACGAAGCAAAATG 57.315 40.909 0.00 0.00 0.00 2.32
3612 4058 7.224753 CACTATAGACCACATACGAAGCAAAAT 59.775 37.037 6.78 0.00 0.00 1.82
3613 4059 6.533723 CACTATAGACCACATACGAAGCAAAA 59.466 38.462 6.78 0.00 0.00 2.44
3614 4060 6.040247 CACTATAGACCACATACGAAGCAAA 58.960 40.000 6.78 0.00 0.00 3.68
3615 4061 5.358725 TCACTATAGACCACATACGAAGCAA 59.641 40.000 6.78 0.00 0.00 3.91
3616 4062 4.885325 TCACTATAGACCACATACGAAGCA 59.115 41.667 6.78 0.00 0.00 3.91
3617 4063 5.434352 TCACTATAGACCACATACGAAGC 57.566 43.478 6.78 0.00 0.00 3.86
3618 4064 8.353684 AGATTTCACTATAGACCACATACGAAG 58.646 37.037 6.78 0.00 0.00 3.79
3619 4065 8.234136 AGATTTCACTATAGACCACATACGAA 57.766 34.615 6.78 0.00 0.00 3.85
3620 4066 7.720074 AGAGATTTCACTATAGACCACATACGA 59.280 37.037 6.78 0.00 0.00 3.43
3621 4067 7.877003 AGAGATTTCACTATAGACCACATACG 58.123 38.462 6.78 0.00 0.00 3.06
3622 4068 8.301002 GGAGAGATTTCACTATAGACCACATAC 58.699 40.741 6.78 0.00 0.00 2.39
3623 4069 8.004801 TGGAGAGATTTCACTATAGACCACATA 58.995 37.037 6.78 0.00 0.00 2.29
3624 4070 6.841229 TGGAGAGATTTCACTATAGACCACAT 59.159 38.462 6.78 0.00 0.00 3.21
3625 4071 6.194967 TGGAGAGATTTCACTATAGACCACA 58.805 40.000 6.78 0.00 0.00 4.17
3626 4072 6.716934 TGGAGAGATTTCACTATAGACCAC 57.283 41.667 6.78 0.00 0.00 4.16
3627 4073 7.619698 TCTTTGGAGAGATTTCACTATAGACCA 59.380 37.037 6.78 0.00 0.00 4.02
3628 4074 7.923878 GTCTTTGGAGAGATTTCACTATAGACC 59.076 40.741 6.78 0.00 32.29 3.85
3629 4075 8.691797 AGTCTTTGGAGAGATTTCACTATAGAC 58.308 37.037 6.78 8.58 35.52 2.59
3630 4076 8.830915 AGTCTTTGGAGAGATTTCACTATAGA 57.169 34.615 6.78 0.00 31.07 1.98
3643 4089 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
3644 4090 8.202137 CCGTTCCTAAATATAAGTCTTTGGAGA 58.798 37.037 0.00 0.00 0.00 3.71
3645 4091 8.202137 TCCGTTCCTAAATATAAGTCTTTGGAG 58.798 37.037 0.00 0.00 0.00 3.86
3646 4092 8.081517 TCCGTTCCTAAATATAAGTCTTTGGA 57.918 34.615 0.00 0.00 0.00 3.53
3647 4093 7.441458 CCTCCGTTCCTAAATATAAGTCTTTGG 59.559 40.741 0.00 0.00 0.00 3.28
3648 4094 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3649 4095 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3650 4096 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3651 4097 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3652 4098 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3653 4099 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3654 4100 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3655 4101 8.731591 AATACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3656 4102 9.471702 CTAATACTCCCTCCGTTCCTAAATATA 57.528 37.037 0.00 0.00 0.00 0.86
3657 4103 7.954620 ACTAATACTCCCTCCGTTCCTAAATAT 59.045 37.037 0.00 0.00 0.00 1.28
3658 4104 7.300658 ACTAATACTCCCTCCGTTCCTAAATA 58.699 38.462 0.00 0.00 0.00 1.40
3659 4105 6.141790 ACTAATACTCCCTCCGTTCCTAAAT 58.858 40.000 0.00 0.00 0.00 1.40
3660 4106 5.522641 ACTAATACTCCCTCCGTTCCTAAA 58.477 41.667 0.00 0.00 0.00 1.85
3661 4107 5.134725 ACTAATACTCCCTCCGTTCCTAA 57.865 43.478 0.00 0.00 0.00 2.69
3662 4108 4.166725 TGACTAATACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
3663 4109 3.053095 TGACTAATACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
3664 4110 3.294214 TGACTAATACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
3665 4111 4.996788 TTGACTAATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
3666 4112 5.952347 AATTGACTAATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
3667 4113 5.952347 AAATTGACTAATACTCCCTCCGT 57.048 39.130 0.00 0.00 0.00 4.69
3668 4114 7.048512 AGAAAAATTGACTAATACTCCCTCCG 58.951 38.462 0.00 0.00 0.00 4.63
3686 4132 7.068716 GGCAGTACCAGAATCCAATAGAAAAAT 59.931 37.037 0.00 0.00 38.86 1.82
3721 4167 6.428159 GCTATCATCATACACCAAAGGTAAGG 59.572 42.308 0.00 0.00 32.11 2.69
3758 4204 4.394729 TGTCAAATCAGGTTACCTTCCAC 58.605 43.478 0.00 0.00 0.00 4.02
3760 4206 5.476945 ACAATGTCAAATCAGGTTACCTTCC 59.523 40.000 0.00 0.00 0.00 3.46
4017 4473 5.845391 TGTTCTTTTCACAGGTAAAAGGG 57.155 39.130 8.08 0.00 41.92 3.95
4078 4538 8.830580 TGATAAGCTTCATACTGCATTTCTAAC 58.169 33.333 0.00 0.00 0.00 2.34
4123 4584 2.636893 TGGCACTTGGCATGGTAAAATT 59.363 40.909 0.49 0.00 46.12 1.82
4124 4585 2.255406 TGGCACTTGGCATGGTAAAAT 58.745 42.857 0.49 0.00 46.12 1.82
4125 4586 1.709578 TGGCACTTGGCATGGTAAAA 58.290 45.000 0.49 0.00 46.12 1.52
4198 4663 4.250305 ACACCACGTCCACCAGGC 62.250 66.667 0.00 0.00 33.74 4.85
4257 4725 2.288640 ACTTACTGGGGAAGAAACGACG 60.289 50.000 0.00 0.00 0.00 5.12
4291 4760 6.625740 GCCTTGAGTGCAACATGTAATTATGT 60.626 38.462 0.00 0.00 42.82 2.29
4301 4770 2.344535 GGTGCCTTGAGTGCAACAT 58.655 52.632 0.00 0.00 45.74 2.71
4339 4808 3.935828 GAGGAAACATTGTACAGAGGCTC 59.064 47.826 6.34 6.34 0.00 4.70
4340 4809 3.327757 TGAGGAAACATTGTACAGAGGCT 59.672 43.478 0.00 0.00 0.00 4.58
4341 4810 3.674997 TGAGGAAACATTGTACAGAGGC 58.325 45.455 0.00 0.00 0.00 4.70
4342 4811 7.921786 TTTATGAGGAAACATTGTACAGAGG 57.078 36.000 0.00 0.00 0.00 3.69
4343 4812 9.778993 CAATTTATGAGGAAACATTGTACAGAG 57.221 33.333 0.00 0.00 0.00 3.35
4344 4813 9.295825 ACAATTTATGAGGAAACATTGTACAGA 57.704 29.630 0.00 0.00 0.00 3.41
4352 4821 9.289782 GCTCCTATACAATTTATGAGGAAACAT 57.710 33.333 0.00 0.00 32.81 2.71
4353 4822 8.494433 AGCTCCTATACAATTTATGAGGAAACA 58.506 33.333 0.00 0.00 32.81 2.83
4354 4823 8.778358 CAGCTCCTATACAATTTATGAGGAAAC 58.222 37.037 0.00 0.00 32.81 2.78
4355 4824 7.445402 GCAGCTCCTATACAATTTATGAGGAAA 59.555 37.037 0.00 0.00 32.81 3.13
4356 4825 6.936900 GCAGCTCCTATACAATTTATGAGGAA 59.063 38.462 0.00 0.00 32.81 3.36
4357 4826 6.467677 GCAGCTCCTATACAATTTATGAGGA 58.532 40.000 0.00 0.00 0.00 3.71
4358 4827 5.349817 CGCAGCTCCTATACAATTTATGAGG 59.650 44.000 0.00 0.00 0.00 3.86
4359 4828 5.928839 ACGCAGCTCCTATACAATTTATGAG 59.071 40.000 0.00 0.00 0.00 2.90
4360 4829 5.853936 ACGCAGCTCCTATACAATTTATGA 58.146 37.500 0.00 0.00 0.00 2.15
4361 4830 5.696270 TGACGCAGCTCCTATACAATTTATG 59.304 40.000 0.00 0.00 0.00 1.90
4362 4831 5.853936 TGACGCAGCTCCTATACAATTTAT 58.146 37.500 0.00 0.00 0.00 1.40
4363 4832 5.270893 TGACGCAGCTCCTATACAATTTA 57.729 39.130 0.00 0.00 0.00 1.40
4364 4833 4.137116 TGACGCAGCTCCTATACAATTT 57.863 40.909 0.00 0.00 0.00 1.82
4365 4834 3.819564 TGACGCAGCTCCTATACAATT 57.180 42.857 0.00 0.00 0.00 2.32
4366 4835 3.819564 TTGACGCAGCTCCTATACAAT 57.180 42.857 0.00 0.00 0.00 2.71
4367 4836 3.819564 ATTGACGCAGCTCCTATACAA 57.180 42.857 0.00 0.00 0.00 2.41
4368 4837 3.819564 AATTGACGCAGCTCCTATACA 57.180 42.857 0.00 0.00 0.00 2.29
4369 4838 6.400091 CGAATTAATTGACGCAGCTCCTATAC 60.400 42.308 5.17 0.00 0.00 1.47
4370 4839 5.633601 CGAATTAATTGACGCAGCTCCTATA 59.366 40.000 5.17 0.00 0.00 1.31
4371 4840 4.449068 CGAATTAATTGACGCAGCTCCTAT 59.551 41.667 5.17 0.00 0.00 2.57
4372 4841 3.802139 CGAATTAATTGACGCAGCTCCTA 59.198 43.478 5.17 0.00 0.00 2.94
4373 4842 2.609459 CGAATTAATTGACGCAGCTCCT 59.391 45.455 5.17 0.00 0.00 3.69
4374 4843 2.351726 ACGAATTAATTGACGCAGCTCC 59.648 45.455 5.17 0.00 0.00 4.70
4375 4844 3.658351 ACGAATTAATTGACGCAGCTC 57.342 42.857 5.17 0.00 0.00 4.09
4382 4851 6.346678 GCTCCCTTCGATACGAATTAATTGAC 60.347 42.308 5.17 0.00 44.85 3.18
4393 4862 2.031857 GTCTAGTGCTCCCTTCGATACG 60.032 54.545 0.00 0.00 0.00 3.06
4395 4864 3.579534 AGTCTAGTGCTCCCTTCGATA 57.420 47.619 0.00 0.00 0.00 2.92
4407 4876 6.576662 TTCTAGTGGTTCTGAAGTCTAGTG 57.423 41.667 16.01 2.50 0.00 2.74
4433 4905 9.170734 TCCATGATTTCAAAATTCAGACTAGAG 57.829 33.333 0.00 0.00 0.00 2.43
4447 4919 6.707608 CCTCGAGTTCATATCCATGATTTCAA 59.292 38.462 12.31 0.00 40.85 2.69
4453 4925 3.006217 CAGCCTCGAGTTCATATCCATGA 59.994 47.826 12.31 0.00 39.47 3.07
4457 4929 3.068873 AGAACAGCCTCGAGTTCATATCC 59.931 47.826 12.31 0.00 44.94 2.59
4466 4938 5.220739 CCATGATTTTAAGAACAGCCTCGAG 60.221 44.000 5.13 5.13 0.00 4.04
4469 4941 6.515272 TTCCATGATTTTAAGAACAGCCTC 57.485 37.500 0.00 0.00 0.00 4.70
4470 4942 6.295292 GGTTTCCATGATTTTAAGAACAGCCT 60.295 38.462 0.00 0.00 0.00 4.58
4471 4943 5.869344 GGTTTCCATGATTTTAAGAACAGCC 59.131 40.000 0.00 0.00 0.00 4.85
4472 4944 6.366061 GTGGTTTCCATGATTTTAAGAACAGC 59.634 38.462 0.00 0.00 35.28 4.40
4519 4992 5.640189 ATGAAAGGCATTGAAAGTCTCAG 57.360 39.130 0.00 0.00 34.81 3.35
4522 4995 5.105997 GCAGTATGAAAGGCATTGAAAGTCT 60.106 40.000 0.00 0.00 39.69 3.24
4534 5007 2.615912 GGCAGCTTAGCAGTATGAAAGG 59.384 50.000 7.07 0.00 39.69 3.11
4554 5030 4.985538 ACTTTACGGAGAGAGTACATGG 57.014 45.455 0.00 0.00 0.00 3.66
4556 5032 7.700022 ACTTTACTTTACGGAGAGAGTACAT 57.300 36.000 0.00 0.00 0.00 2.29
4562 5038 6.006449 ACCACTACTTTACTTTACGGAGAGA 58.994 40.000 0.00 0.00 0.00 3.10
4563 5039 6.150809 AGACCACTACTTTACTTTACGGAGAG 59.849 42.308 0.00 0.00 0.00 3.20
4564 5040 6.006449 AGACCACTACTTTACTTTACGGAGA 58.994 40.000 0.00 0.00 0.00 3.71
4565 5041 6.264841 AGACCACTACTTTACTTTACGGAG 57.735 41.667 0.00 0.00 0.00 4.63
4567 5043 7.867403 TGTTTAGACCACTACTTTACTTTACGG 59.133 37.037 0.00 0.00 0.00 4.02
4568 5044 8.694394 GTGTTTAGACCACTACTTTACTTTACG 58.306 37.037 0.00 0.00 0.00 3.18
4569 5045 9.755804 AGTGTTTAGACCACTACTTTACTTTAC 57.244 33.333 0.00 0.00 41.24 2.01
4571 5047 8.702819 AGAGTGTTTAGACCACTACTTTACTTT 58.297 33.333 0.00 0.00 43.00 2.66
4573 5049 7.836479 AGAGTGTTTAGACCACTACTTTACT 57.164 36.000 0.00 0.00 43.00 2.24
4620 5096 9.406662 AGTCCCCTAGTTCATATAATAATTGGT 57.593 33.333 0.00 0.00 0.00 3.67
4621 5097 9.672673 CAGTCCCCTAGTTCATATAATAATTGG 57.327 37.037 0.00 0.00 0.00 3.16
4622 5098 9.167311 GCAGTCCCCTAGTTCATATAATAATTG 57.833 37.037 0.00 0.00 0.00 2.32
4623 5099 8.890472 TGCAGTCCCCTAGTTCATATAATAATT 58.110 33.333 0.00 0.00 0.00 1.40
4624 5100 8.449423 TGCAGTCCCCTAGTTCATATAATAAT 57.551 34.615 0.00 0.00 0.00 1.28
4625 5101 7.865530 TGCAGTCCCCTAGTTCATATAATAA 57.134 36.000 0.00 0.00 0.00 1.40
4626 5102 7.865530 TTGCAGTCCCCTAGTTCATATAATA 57.134 36.000 0.00 0.00 0.00 0.98
4627 5103 6.763715 TTGCAGTCCCCTAGTTCATATAAT 57.236 37.500 0.00 0.00 0.00 1.28
4628 5104 6.569127 TTTGCAGTCCCCTAGTTCATATAA 57.431 37.500 0.00 0.00 0.00 0.98
4629 5105 6.409234 CCTTTTGCAGTCCCCTAGTTCATATA 60.409 42.308 0.00 0.00 0.00 0.86
4630 5106 5.440610 CTTTTGCAGTCCCCTAGTTCATAT 58.559 41.667 0.00 0.00 0.00 1.78
4631 5107 4.324254 CCTTTTGCAGTCCCCTAGTTCATA 60.324 45.833 0.00 0.00 0.00 2.15
4632 5108 3.562176 CCTTTTGCAGTCCCCTAGTTCAT 60.562 47.826 0.00 0.00 0.00 2.57
4633 5109 2.224769 CCTTTTGCAGTCCCCTAGTTCA 60.225 50.000 0.00 0.00 0.00 3.18
4634 5110 2.224793 ACCTTTTGCAGTCCCCTAGTTC 60.225 50.000 0.00 0.00 0.00 3.01
4635 5111 1.780919 ACCTTTTGCAGTCCCCTAGTT 59.219 47.619 0.00 0.00 0.00 2.24
4636 5112 1.446016 ACCTTTTGCAGTCCCCTAGT 58.554 50.000 0.00 0.00 0.00 2.57
4637 5113 2.586648 AACCTTTTGCAGTCCCCTAG 57.413 50.000 0.00 0.00 0.00 3.02
4638 5114 4.340617 CATTAACCTTTTGCAGTCCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
4639 5115 3.165071 CATTAACCTTTTGCAGTCCCCT 58.835 45.455 0.00 0.00 0.00 4.79
4686 5168 7.174946 AGGACACAAGTACAACAATTATTGGAG 59.825 37.037 9.88 3.89 33.63 3.86
4706 5188 1.535462 CACGTGGATCCAAAAGGACAC 59.465 52.381 18.20 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.