Multiple sequence alignment - TraesCS7D01G374400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G374400 chr7D 100.000 7196 0 0 1 7196 484731460 484724265 0.000000e+00 13289.0
1 TraesCS7D01G374400 chr7D 90.909 638 33 4 83 715 138092684 138092067 0.000000e+00 833.0
2 TraesCS7D01G374400 chr7D 89.256 242 25 1 6956 7196 460516156 460516397 1.170000e-77 302.0
3 TraesCS7D01G374400 chr7D 97.059 34 1 0 5697 5730 484725390 484725357 2.800000e-04 58.4
4 TraesCS7D01G374400 chr7D 97.059 34 1 0 6071 6104 484725764 484725731 2.800000e-04 58.4
5 TraesCS7D01G374400 chr7B 96.101 2488 72 12 2383 4861 511932234 511929763 0.000000e+00 4034.0
6 TraesCS7D01G374400 chr7B 91.658 1966 113 27 4984 6943 511929705 511927785 0.000000e+00 2675.0
7 TraesCS7D01G374400 chr7B 95.190 894 39 4 1487 2378 511933518 511932627 0.000000e+00 1410.0
8 TraesCS7D01G374400 chr7B 95.854 410 14 1 758 1164 511934536 511934127 0.000000e+00 660.0
9 TraesCS7D01G374400 chr7B 93.750 272 5 4 1219 1490 511933804 511933545 1.450000e-106 398.0
10 TraesCS7D01G374400 chr7B 84.507 71 6 5 101 169 742171480 742171413 1.680000e-06 65.8
11 TraesCS7D01G374400 chr7A 93.370 1825 93 16 3045 4859 553040132 553038326 0.000000e+00 2675.0
12 TraesCS7D01G374400 chr7A 94.927 887 39 5 2044 2928 553041157 553040275 0.000000e+00 1384.0
13 TraesCS7D01G374400 chr7A 91.554 888 42 13 5003 5883 553038159 553037298 0.000000e+00 1194.0
14 TraesCS7D01G374400 chr7A 94.200 569 27 6 1487 2053 553042898 553042334 0.000000e+00 863.0
15 TraesCS7D01G374400 chr7A 95.618 502 18 2 749 1246 553043638 553043137 0.000000e+00 802.0
16 TraesCS7D01G374400 chr7A 84.909 603 57 15 5936 6506 553037287 553036687 4.840000e-161 579.0
17 TraesCS7D01G374400 chr7A 96.774 217 5 2 1275 1490 553043140 553042925 1.910000e-95 361.0
18 TraesCS7D01G374400 chr7A 85.366 246 28 6 6512 6756 553036590 553036352 1.550000e-61 248.0
19 TraesCS7D01G374400 chr7A 93.210 162 5 4 2983 3139 553040290 553040130 4.340000e-57 233.0
20 TraesCS7D01G374400 chr7A 89.000 100 10 1 6743 6842 553036323 553036225 9.800000e-24 122.0
21 TraesCS7D01G374400 chr7A 92.683 82 5 1 1844 1925 141294375 141294295 4.560000e-22 117.0
22 TraesCS7D01G374400 chr2A 94.646 579 28 2 18 593 448549139 448549717 0.000000e+00 894.0
23 TraesCS7D01G374400 chr2A 89.669 242 24 1 6956 7196 561298743 561298984 2.520000e-79 307.0
24 TraesCS7D01G374400 chr2A 93.548 124 8 0 593 716 448566118 448566241 1.230000e-42 185.0
25 TraesCS7D01G374400 chr2A 82.828 99 10 4 173 271 448543483 448543574 1.660000e-11 82.4
26 TraesCS7D01G374400 chr2A 81.522 92 11 3 180 271 448543298 448543383 3.600000e-08 71.3
27 TraesCS7D01G374400 chr3B 87.954 606 46 6 1 581 31674332 31673729 0.000000e+00 689.0
28 TraesCS7D01G374400 chr3B 95.161 124 4 2 592 715 31673591 31673470 2.050000e-45 195.0
29 TraesCS7D01G374400 chr3B 100.000 32 0 0 6880 6911 446699920 446699889 7.800000e-05 60.2
30 TraesCS7D01G374400 chr5D 81.412 694 63 30 14 661 325373404 325374077 2.320000e-139 507.0
31 TraesCS7D01G374400 chr5D 89.712 243 25 0 6954 7196 451067130 451067372 1.950000e-80 311.0
32 TraesCS7D01G374400 chr5D 93.902 82 5 0 1844 1925 114002264 114002183 2.730000e-24 124.0
33 TraesCS7D01G374400 chr5D 93.976 83 4 1 1843 1925 520111706 520111625 2.730000e-24 124.0
34 TraesCS7D01G374400 chr5D 89.091 55 4 2 6864 6916 135642588 135642534 4.660000e-07 67.6
35 TraesCS7D01G374400 chr5D 94.595 37 1 1 257 292 446364055 446364019 1.000000e-03 56.5
36 TraesCS7D01G374400 chr6A 89.958 239 24 0 6958 7196 54773671 54773909 7.010000e-80 309.0
37 TraesCS7D01G374400 chr6A 79.310 493 56 23 14 472 426170933 426170453 3.260000e-78 303.0
38 TraesCS7D01G374400 chr6A 88.664 247 26 2 6951 7196 315391352 315391597 4.220000e-77 300.0
39 TraesCS7D01G374400 chr6A 93.902 82 5 0 1844 1925 540151754 540151673 2.730000e-24 124.0
40 TraesCS7D01G374400 chr6A 97.368 38 1 0 6880 6917 464716625 464716588 1.680000e-06 65.8
41 TraesCS7D01G374400 chr6D 89.627 241 23 2 6956 7196 327022164 327021926 9.070000e-79 305.0
42 TraesCS7D01G374400 chr6D 89.024 246 25 2 6952 7195 434164456 434164211 3.260000e-78 303.0
43 TraesCS7D01G374400 chr3D 90.171 234 23 0 6963 7196 255424682 255424449 9.070000e-79 305.0
44 TraesCS7D01G374400 chr3D 93.902 82 5 0 1844 1925 503864521 503864602 2.730000e-24 124.0
45 TraesCS7D01G374400 chr2D 89.627 241 23 2 6958 7196 328796547 328796307 9.070000e-79 305.0
46 TraesCS7D01G374400 chr2D 93.902 82 5 0 1844 1925 484317027 484317108 2.730000e-24 124.0
47 TraesCS7D01G374400 chr3A 93.182 88 5 1 1839 1925 713978067 713978154 2.110000e-25 128.0
48 TraesCS7D01G374400 chr3A 95.455 44 2 0 6874 6917 745903389 745903346 3.600000e-08 71.3
49 TraesCS7D01G374400 chr4D 90.566 53 3 2 6865 6916 459307717 459307768 1.300000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G374400 chr7D 484724265 484731460 7195 True 13289.0 13289 100.0000 1 7196 1 chr7D.!!$R2 7195
1 TraesCS7D01G374400 chr7D 138092067 138092684 617 True 833.0 833 90.9090 83 715 1 chr7D.!!$R1 632
2 TraesCS7D01G374400 chr7B 511927785 511934536 6751 True 1835.4 4034 94.5106 758 6943 5 chr7B.!!$R2 6185
3 TraesCS7D01G374400 chr7A 553036225 553043638 7413 True 846.1 2675 91.8928 749 6842 10 chr7A.!!$R2 6093
4 TraesCS7D01G374400 chr2A 448549139 448549717 578 False 894.0 894 94.6460 18 593 1 chr2A.!!$F1 575
5 TraesCS7D01G374400 chr3B 31673470 31674332 862 True 442.0 689 91.5575 1 715 2 chr3B.!!$R2 714
6 TraesCS7D01G374400 chr5D 325373404 325374077 673 False 507.0 507 81.4120 14 661 1 chr5D.!!$F1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 303 0.105778 TCACAACACCGATGTGCAGA 59.894 50.000 1.91 0.00 46.86 4.26 F
751 920 1.821088 AAGGAGTTTCCCTGACAGGT 58.179 50.000 20.24 0.54 37.19 4.00 F
1271 1739 0.038526 CTGTTGTTCGTCGGTAGCCT 60.039 55.000 0.00 0.00 0.00 4.58 F
1275 1743 0.242825 TGTTCGTCGGTAGCCTTCAG 59.757 55.000 0.00 0.00 0.00 3.02 F
1276 1744 0.243095 GTTCGTCGGTAGCCTTCAGT 59.757 55.000 0.00 0.00 0.00 3.41 F
2593 4669 1.141657 AGAGGTGCATGTGTCACTTGT 59.858 47.619 17.44 1.08 34.97 3.16 F
2974 5124 1.171308 GCAGCAGCTGGATCTTTCAA 58.829 50.000 24.13 0.00 37.91 2.69 F
2975 5125 1.542915 GCAGCAGCTGGATCTTTCAAA 59.457 47.619 24.13 0.00 37.91 2.69 F
3717 5967 1.774254 TGGTTCTCTCAAGGAGCCAAA 59.226 47.619 0.00 0.00 40.23 3.28 F
4712 6969 0.320683 GGCCTGTGTTTTCCATTGGC 60.321 55.000 0.00 0.00 41.01 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1252 1720 0.038526 AGGCTACCGACGAACAACAG 60.039 55.000 0.00 0.00 0.00 3.16 R
2053 2554 1.475034 GGGCCGCAGATCTTCATAACA 60.475 52.381 0.00 0.00 0.00 2.41 R
2940 5090 0.736325 GCTGCTGCTGGCTTTGATTG 60.736 55.000 8.53 0.00 42.39 2.67 R
2955 5105 1.171308 TTGAAAGATCCAGCTGCTGC 58.829 50.000 23.86 10.69 40.05 5.25 R
2991 5141 3.194968 GGAGGACATTCAGTAGAACGGAA 59.805 47.826 0.00 0.00 36.77 4.30 R
4538 6795 0.453390 GCATGGGAAAGTGCTGCTAC 59.547 55.000 0.00 0.00 38.30 3.58 R
4693 6950 0.320683 GCCAATGGAAAACACAGGCC 60.321 55.000 2.05 0.00 43.14 5.19 R
4695 6952 1.341080 AGGCCAATGGAAAACACAGG 58.659 50.000 5.01 0.00 0.00 4.00 R
5193 7491 0.721483 CGAAGCGAGTTTGGCGTTTC 60.721 55.000 0.00 0.00 42.80 2.78 R
6238 8566 0.032540 CAAGGCTCCAACTTGGCAAC 59.967 55.000 2.52 0.00 41.16 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.678635 GGCCCATTGCAGCACAGTA 60.679 57.895 0.00 0.00 43.89 2.74
98 99 1.741770 GGCTCCGAACGCAGATTGT 60.742 57.895 0.00 0.00 0.00 2.71
99 100 1.696832 GGCTCCGAACGCAGATTGTC 61.697 60.000 0.00 0.00 0.00 3.18
213 214 2.203669 AAGGCCCATTGCAGCACA 60.204 55.556 0.00 0.00 43.89 4.57
233 234 3.576356 GGCGATGCATGGTGGACG 61.576 66.667 2.46 0.48 0.00 4.79
301 303 0.105778 TCACAACACCGATGTGCAGA 59.894 50.000 1.91 0.00 46.86 4.26
563 605 2.886523 TGATGTAAAAGCAGCAGCAACT 59.113 40.909 3.17 0.00 45.49 3.16
631 800 2.670148 GCGGAAGTCCAGGGACCAT 61.670 63.158 14.67 4.53 45.59 3.55
715 884 4.541779 CGGTTGATTTGAAACGATTTCCA 58.458 39.130 0.00 0.00 38.34 3.53
716 885 4.979197 CGGTTGATTTGAAACGATTTCCAA 59.021 37.500 0.00 0.00 38.34 3.53
717 886 5.460419 CGGTTGATTTGAAACGATTTCCAAA 59.540 36.000 0.00 0.00 38.34 3.28
718 887 6.145371 CGGTTGATTTGAAACGATTTCCAAAT 59.855 34.615 5.21 5.21 38.34 2.32
719 888 7.327275 CGGTTGATTTGAAACGATTTCCAAATA 59.673 33.333 5.45 0.00 38.34 1.40
720 889 8.983724 GGTTGATTTGAAACGATTTCCAAATAA 58.016 29.630 5.45 0.00 38.90 1.40
725 894 9.824534 ATTTGAAACGATTTCCAAATAAATTGC 57.175 25.926 4.06 0.00 38.90 3.56
726 895 8.600449 TTGAAACGATTTCCAAATAAATTGCT 57.400 26.923 0.00 0.00 38.90 3.91
727 896 8.600449 TGAAACGATTTCCAAATAAATTGCTT 57.400 26.923 0.00 0.00 38.90 3.91
728 897 9.050601 TGAAACGATTTCCAAATAAATTGCTTT 57.949 25.926 0.00 0.00 38.90 3.51
743 912 7.801716 AAATTGCTTTAAAAAGGAGTTTCCC 57.198 32.000 10.30 0.00 40.41 3.97
744 913 6.747414 ATTGCTTTAAAAAGGAGTTTCCCT 57.253 33.333 4.71 0.00 37.65 4.20
745 914 5.529581 TGCTTTAAAAAGGAGTTTCCCTG 57.470 39.130 4.71 0.00 37.19 4.45
746 915 5.205056 TGCTTTAAAAAGGAGTTTCCCTGA 58.795 37.500 4.71 0.00 37.19 3.86
747 916 5.068591 TGCTTTAAAAAGGAGTTTCCCTGAC 59.931 40.000 4.71 0.00 37.19 3.51
748 917 5.068591 GCTTTAAAAAGGAGTTTCCCTGACA 59.931 40.000 4.71 0.00 37.19 3.58
749 918 6.709018 TTTAAAAAGGAGTTTCCCTGACAG 57.291 37.500 0.00 0.00 37.19 3.51
750 919 2.959465 AAAGGAGTTTCCCTGACAGG 57.041 50.000 15.15 15.15 37.19 4.00
751 920 1.821088 AAGGAGTTTCCCTGACAGGT 58.179 50.000 20.24 0.54 37.19 4.00
752 921 2.715763 AGGAGTTTCCCTGACAGGTA 57.284 50.000 20.24 0.78 37.19 3.08
930 1102 2.742372 CACGCTCTCCAAACCCGG 60.742 66.667 0.00 0.00 0.00 5.73
997 1169 2.346541 GCTTTGAGGGGCTCCAAGC 61.347 63.158 4.79 8.10 46.49 4.01
1178 1350 2.368439 GATGCTGCAACAGGTATCCAA 58.632 47.619 6.36 0.00 31.21 3.53
1183 1355 3.181493 GCTGCAACAGGTATCCAAATCAG 60.181 47.826 0.00 0.00 31.21 2.90
1201 1373 3.288381 ACTCCTCCTGCTCCCCCT 61.288 66.667 0.00 0.00 0.00 4.79
1203 1375 2.041265 TCCTCCTGCTCCCCCTTC 59.959 66.667 0.00 0.00 0.00 3.46
1232 1672 2.005451 CGTCTCAGCTTTGATCCAAGG 58.995 52.381 8.50 0.00 0.00 3.61
1246 1714 7.630242 TTGATCCAAGGAAGCAATTTAGTAG 57.370 36.000 0.00 0.00 0.00 2.57
1248 1716 4.270008 TCCAAGGAAGCAATTTAGTAGCC 58.730 43.478 0.00 0.00 0.00 3.93
1249 1717 4.018415 TCCAAGGAAGCAATTTAGTAGCCT 60.018 41.667 0.00 0.00 0.00 4.58
1250 1718 4.336713 CCAAGGAAGCAATTTAGTAGCCTC 59.663 45.833 0.00 0.00 0.00 4.70
1251 1719 3.798202 AGGAAGCAATTTAGTAGCCTCG 58.202 45.455 0.00 0.00 0.00 4.63
1252 1720 2.288186 GGAAGCAATTTAGTAGCCTCGC 59.712 50.000 0.00 0.00 0.00 5.03
1253 1721 2.990066 AGCAATTTAGTAGCCTCGCT 57.010 45.000 0.00 0.00 43.41 4.93
1255 1723 2.093447 AGCAATTTAGTAGCCTCGCTGT 60.093 45.455 0.00 0.00 40.10 4.40
1256 1724 2.678336 GCAATTTAGTAGCCTCGCTGTT 59.322 45.455 0.00 0.00 40.10 3.16
1257 1725 3.485877 GCAATTTAGTAGCCTCGCTGTTG 60.486 47.826 0.00 0.00 40.10 3.33
1258 1726 3.611766 ATTTAGTAGCCTCGCTGTTGT 57.388 42.857 0.00 0.00 40.10 3.32
1259 1727 3.396260 TTTAGTAGCCTCGCTGTTGTT 57.604 42.857 0.00 0.00 40.10 2.83
1260 1728 2.649331 TAGTAGCCTCGCTGTTGTTC 57.351 50.000 0.00 0.00 40.10 3.18
1261 1729 0.388649 AGTAGCCTCGCTGTTGTTCG 60.389 55.000 0.00 0.00 40.10 3.95
1262 1730 0.666577 GTAGCCTCGCTGTTGTTCGT 60.667 55.000 0.00 0.00 40.10 3.85
1263 1731 0.388134 TAGCCTCGCTGTTGTTCGTC 60.388 55.000 0.00 0.00 40.10 4.20
1264 1732 3.000080 GCCTCGCTGTTGTTCGTCG 62.000 63.158 0.00 0.00 0.00 5.12
1265 1733 2.372690 CCTCGCTGTTGTTCGTCGG 61.373 63.158 0.00 0.00 0.00 4.79
1266 1734 1.660575 CTCGCTGTTGTTCGTCGGT 60.661 57.895 0.00 0.00 0.00 4.69
1267 1735 0.386352 CTCGCTGTTGTTCGTCGGTA 60.386 55.000 0.00 0.00 0.00 4.02
1268 1736 0.386352 TCGCTGTTGTTCGTCGGTAG 60.386 55.000 0.00 0.00 0.00 3.18
1269 1737 1.779683 GCTGTTGTTCGTCGGTAGC 59.220 57.895 0.00 0.00 0.00 3.58
1270 1738 1.623973 GCTGTTGTTCGTCGGTAGCC 61.624 60.000 0.00 0.00 0.00 3.93
1271 1739 0.038526 CTGTTGTTCGTCGGTAGCCT 60.039 55.000 0.00 0.00 0.00 4.58
1272 1740 0.390124 TGTTGTTCGTCGGTAGCCTT 59.610 50.000 0.00 0.00 0.00 4.35
1273 1741 1.066136 GTTGTTCGTCGGTAGCCTTC 58.934 55.000 0.00 0.00 0.00 3.46
1274 1742 0.675083 TTGTTCGTCGGTAGCCTTCA 59.325 50.000 0.00 0.00 0.00 3.02
1275 1743 0.242825 TGTTCGTCGGTAGCCTTCAG 59.757 55.000 0.00 0.00 0.00 3.02
1276 1744 0.243095 GTTCGTCGGTAGCCTTCAGT 59.757 55.000 0.00 0.00 0.00 3.41
1277 1745 1.470098 GTTCGTCGGTAGCCTTCAGTA 59.530 52.381 0.00 0.00 0.00 2.74
1278 1746 2.048444 TCGTCGGTAGCCTTCAGTAT 57.952 50.000 0.00 0.00 0.00 2.12
1279 1747 1.945394 TCGTCGGTAGCCTTCAGTATC 59.055 52.381 0.00 0.00 0.00 2.24
1280 1748 1.674441 CGTCGGTAGCCTTCAGTATCA 59.326 52.381 0.00 0.00 0.00 2.15
1281 1749 2.098607 CGTCGGTAGCCTTCAGTATCAA 59.901 50.000 0.00 0.00 0.00 2.57
1282 1750 3.243434 CGTCGGTAGCCTTCAGTATCAAT 60.243 47.826 0.00 0.00 0.00 2.57
1283 1751 4.694339 GTCGGTAGCCTTCAGTATCAATT 58.306 43.478 0.00 0.00 0.00 2.32
1284 1752 5.116882 GTCGGTAGCCTTCAGTATCAATTT 58.883 41.667 0.00 0.00 0.00 1.82
1285 1753 5.006746 GTCGGTAGCCTTCAGTATCAATTTG 59.993 44.000 0.00 0.00 0.00 2.32
1286 1754 5.105106 TCGGTAGCCTTCAGTATCAATTTGA 60.105 40.000 0.75 0.75 0.00 2.69
1540 2039 3.929610 GAGCTTACGTCTCATGCTTCTTT 59.070 43.478 0.00 0.00 33.83 2.52
1611 2110 4.345257 ACATCATCAGGCTAAACGAGGTAT 59.655 41.667 0.00 0.00 0.00 2.73
1732 2232 9.995003 TTTTTCATTACTAGCATTTTGACCATT 57.005 25.926 0.00 0.00 0.00 3.16
1842 2342 4.495422 CTGTGGTCTACATGTTGAGTACC 58.505 47.826 10.37 9.53 38.92 3.34
1845 2346 5.071250 TGTGGTCTACATGTTGAGTACCTTT 59.929 40.000 10.37 0.00 33.42 3.11
1888 2389 7.513781 TCCTATCTATTCATCTTCAACCATGGA 59.486 37.037 21.47 0.00 0.00 3.41
2079 3766 3.207669 GATCTGCGGCCCTGCTTG 61.208 66.667 0.00 0.00 35.36 4.01
2111 3798 5.461078 GCAAAACATATGTTGATCCTGATGC 59.539 40.000 21.46 15.86 38.44 3.91
2146 3833 5.853936 TCAGAAACTTGCTGCTTAGTAAGA 58.146 37.500 14.27 0.00 35.83 2.10
2187 3874 4.475919 AAAGCCCTTATATGCTCCCAAT 57.524 40.909 0.00 0.00 36.66 3.16
2257 3945 6.974932 AGATGCTTGTACAATACAGAAGTG 57.025 37.500 9.13 0.00 40.24 3.16
2265 3953 7.503521 TGTACAATACAGAAGTGAAAATGCA 57.496 32.000 0.00 0.00 34.06 3.96
2272 3960 4.276926 ACAGAAGTGAAAATGCAGAGGTTC 59.723 41.667 0.00 0.00 0.00 3.62
2295 3983 8.677300 GTTCTATGCAATTTATTGGAGAGTTGA 58.323 33.333 15.16 4.29 44.41 3.18
2298 3986 7.893124 ATGCAATTTATTGGAGAGTTGAGAT 57.107 32.000 0.00 0.00 41.40 2.75
2593 4669 1.141657 AGAGGTGCATGTGTCACTTGT 59.858 47.619 17.44 1.08 34.97 3.16
2873 4953 2.615912 GCTCCTGAGGTATGCAATGTTC 59.384 50.000 0.00 0.00 0.00 3.18
2879 4959 6.071952 TCCTGAGGTATGCAATGTTCTTTTTC 60.072 38.462 0.00 0.00 0.00 2.29
2880 4960 6.071728 CCTGAGGTATGCAATGTTCTTTTTCT 60.072 38.462 0.00 0.00 0.00 2.52
2881 4961 7.288810 TGAGGTATGCAATGTTCTTTTTCTT 57.711 32.000 0.00 0.00 0.00 2.52
2922 5072 7.968405 GCCTATACACGAATTGACTTTTGAATT 59.032 33.333 0.00 0.00 0.00 2.17
2923 5073 9.490663 CCTATACACGAATTGACTTTTGAATTC 57.509 33.333 0.00 0.00 35.90 2.17
2924 5074 9.490663 CTATACACGAATTGACTTTTGAATTCC 57.509 33.333 2.27 0.00 35.86 3.01
2925 5075 5.212194 ACACGAATTGACTTTTGAATTCCG 58.788 37.500 2.27 0.00 35.86 4.30
2926 5076 5.212194 CACGAATTGACTTTTGAATTCCGT 58.788 37.500 2.27 0.00 35.86 4.69
2927 5077 5.685511 CACGAATTGACTTTTGAATTCCGTT 59.314 36.000 2.27 0.00 35.86 4.44
2928 5078 6.198216 CACGAATTGACTTTTGAATTCCGTTT 59.802 34.615 2.27 0.00 35.86 3.60
2929 5079 6.754675 ACGAATTGACTTTTGAATTCCGTTTT 59.245 30.769 2.27 0.00 35.86 2.43
2930 5080 7.043656 ACGAATTGACTTTTGAATTCCGTTTTC 60.044 33.333 2.27 0.00 35.86 2.29
2931 5081 7.477144 AATTGACTTTTGAATTCCGTTTTCC 57.523 32.000 2.27 0.00 0.00 3.13
2932 5082 5.845391 TGACTTTTGAATTCCGTTTTCCT 57.155 34.783 2.27 0.00 0.00 3.36
2933 5083 6.215495 TGACTTTTGAATTCCGTTTTCCTT 57.785 33.333 2.27 0.00 0.00 3.36
2934 5084 6.270064 TGACTTTTGAATTCCGTTTTCCTTC 58.730 36.000 2.27 0.00 0.00 3.46
2935 5085 6.096282 TGACTTTTGAATTCCGTTTTCCTTCT 59.904 34.615 2.27 0.00 0.00 2.85
2936 5086 7.283580 TGACTTTTGAATTCCGTTTTCCTTCTA 59.716 33.333 2.27 0.00 0.00 2.10
2937 5087 8.002984 ACTTTTGAATTCCGTTTTCCTTCTAA 57.997 30.769 2.27 0.00 0.00 2.10
2938 5088 8.471609 ACTTTTGAATTCCGTTTTCCTTCTAAA 58.528 29.630 2.27 0.00 0.00 1.85
2939 5089 9.476202 CTTTTGAATTCCGTTTTCCTTCTAAAT 57.524 29.630 2.27 0.00 0.00 1.40
2940 5090 9.471084 TTTTGAATTCCGTTTTCCTTCTAAATC 57.529 29.630 2.27 0.00 0.00 2.17
2941 5091 7.753309 TGAATTCCGTTTTCCTTCTAAATCA 57.247 32.000 2.27 0.00 0.00 2.57
2942 5092 8.172352 TGAATTCCGTTTTCCTTCTAAATCAA 57.828 30.769 2.27 0.00 0.00 2.57
2943 5093 8.802267 TGAATTCCGTTTTCCTTCTAAATCAAT 58.198 29.630 2.27 0.00 0.00 2.57
2944 5094 9.290483 GAATTCCGTTTTCCTTCTAAATCAATC 57.710 33.333 0.00 0.00 0.00 2.67
2945 5095 7.753309 TTCCGTTTTCCTTCTAAATCAATCA 57.247 32.000 0.00 0.00 0.00 2.57
2946 5096 7.753309 TCCGTTTTCCTTCTAAATCAATCAA 57.247 32.000 0.00 0.00 0.00 2.57
2947 5097 8.172352 TCCGTTTTCCTTCTAAATCAATCAAA 57.828 30.769 0.00 0.00 0.00 2.69
2948 5098 8.296713 TCCGTTTTCCTTCTAAATCAATCAAAG 58.703 33.333 0.00 0.00 0.00 2.77
2949 5099 7.062255 CCGTTTTCCTTCTAAATCAATCAAAGC 59.938 37.037 0.00 0.00 0.00 3.51
2950 5100 7.062255 CGTTTTCCTTCTAAATCAATCAAAGCC 59.938 37.037 0.00 0.00 0.00 4.35
2951 5101 7.537596 TTTCCTTCTAAATCAATCAAAGCCA 57.462 32.000 0.00 0.00 0.00 4.75
2952 5102 6.764308 TCCTTCTAAATCAATCAAAGCCAG 57.236 37.500 0.00 0.00 0.00 4.85
2953 5103 5.126061 TCCTTCTAAATCAATCAAAGCCAGC 59.874 40.000 0.00 0.00 0.00 4.85
2954 5104 5.105635 CCTTCTAAATCAATCAAAGCCAGCA 60.106 40.000 0.00 0.00 0.00 4.41
2955 5105 5.571784 TCTAAATCAATCAAAGCCAGCAG 57.428 39.130 0.00 0.00 0.00 4.24
2956 5106 2.667473 AATCAATCAAAGCCAGCAGC 57.333 45.000 0.00 0.00 44.25 5.25
2973 5123 2.864114 GCAGCAGCTGGATCTTTCA 58.136 52.632 24.13 0.00 37.91 2.69
2974 5124 1.171308 GCAGCAGCTGGATCTTTCAA 58.829 50.000 24.13 0.00 37.91 2.69
2975 5125 1.542915 GCAGCAGCTGGATCTTTCAAA 59.457 47.619 24.13 0.00 37.91 2.69
2976 5126 2.029649 GCAGCAGCTGGATCTTTCAAAA 60.030 45.455 24.13 0.00 37.91 2.44
2977 5127 3.553508 GCAGCAGCTGGATCTTTCAAAAA 60.554 43.478 24.13 0.00 37.91 1.94
3048 5198 7.658525 AAATTTTGTACAGGCATATGATCCA 57.341 32.000 6.97 0.00 0.00 3.41
3191 5441 6.884836 AGTCAGTTTGTCTGGTAGTTCTTTTT 59.115 34.615 0.00 0.00 43.76 1.94
3247 5497 6.262944 TCAGCAGTTAACTTATGGCCATTATG 59.737 38.462 26.37 16.29 0.00 1.90
3276 5526 9.304731 TCGTGTTTACCATGTTCATACTATAAC 57.695 33.333 0.00 0.00 0.00 1.89
3472 5722 5.415701 AGATGTTTGGTCATGTGGTGTTATC 59.584 40.000 0.00 0.00 0.00 1.75
3634 5884 9.322776 GATACACGATGATTTTGCTCATATTTC 57.677 33.333 0.00 0.00 36.01 2.17
3717 5967 1.774254 TGGTTCTCTCAAGGAGCCAAA 59.226 47.619 0.00 0.00 40.23 3.28
3746 5996 6.586344 TGATCCAGAGAATACTTGATCCAAC 58.414 40.000 0.00 0.00 31.33 3.77
3792 6042 5.456548 TGAGTTTGTGTCATTGCATCATT 57.543 34.783 0.00 0.00 0.00 2.57
3825 6075 6.621737 TTAGCAGTTACGACAAAGTTATCG 57.378 37.500 7.68 7.68 43.97 2.92
3969 6219 9.987272 GAAACTTGTTAACTAGAACCTAACCTA 57.013 33.333 21.48 0.00 0.00 3.08
4085 6335 9.601217 AGCGTATGACTATTAAAGAAATGAAGT 57.399 29.630 0.00 0.00 0.00 3.01
4117 6367 7.834181 ACATGGTTTAGCAAGAATTATGTAGGT 59.166 33.333 0.00 0.00 0.00 3.08
4132 6382 4.801330 TGTAGGTGTTAGACATGGTGAG 57.199 45.455 0.00 0.00 0.00 3.51
4191 6441 6.414987 GCTTTTGATAATATCGAGGTTTGTGC 59.585 38.462 0.00 0.00 0.00 4.57
4222 6472 4.502171 TGTTTTGGTGCATAGTGATGTG 57.498 40.909 0.00 0.00 35.30 3.21
4225 6475 2.008752 TGGTGCATAGTGATGTGTCG 57.991 50.000 0.00 0.00 35.30 4.35
4451 6705 4.749099 GCATGGTTGAATGTTTACTTGCAA 59.251 37.500 0.00 0.00 0.00 4.08
4587 6844 6.270000 TGGTCTCAGGTGGTATCTTATAATGG 59.730 42.308 0.00 0.00 0.00 3.16
4599 6856 5.806955 TCTTATAATGGTCCCCCAACTTT 57.193 39.130 0.00 0.00 46.04 2.66
4601 6858 7.286667 TCTTATAATGGTCCCCCAACTTTTA 57.713 36.000 0.00 0.00 46.04 1.52
4629 6886 1.964223 AGGCTCGAGAGTTGAAACAGA 59.036 47.619 18.75 0.00 0.00 3.41
4693 6950 2.491675 AAGGAAGAAGGCTTAACCCG 57.508 50.000 0.00 0.00 40.58 5.28
4695 6952 1.030488 GGAAGAAGGCTTAACCCGGC 61.030 60.000 0.00 0.00 40.58 6.13
4712 6969 0.320683 GGCCTGTGTTTTCCATTGGC 60.321 55.000 0.00 0.00 41.01 4.52
4734 6991 5.417580 GGCCTTGGTATTATCAGTTGTTTGA 59.582 40.000 0.00 0.00 0.00 2.69
4737 6994 7.094377 GCCTTGGTATTATCAGTTGTTTGAGAA 60.094 37.037 0.00 0.00 33.34 2.87
4823 7080 2.433868 ATGTCGCGTCTGTTTACTGT 57.566 45.000 5.77 0.00 0.00 3.55
4861 7118 7.327975 ACACTTCAACCATATATTCAGAACGA 58.672 34.615 0.00 0.00 0.00 3.85
4862 7119 7.822334 ACACTTCAACCATATATTCAGAACGAA 59.178 33.333 0.00 0.00 38.22 3.85
4863 7120 8.116753 CACTTCAACCATATATTCAGAACGAAC 58.883 37.037 0.00 0.00 36.12 3.95
4864 7121 8.041323 ACTTCAACCATATATTCAGAACGAACT 58.959 33.333 0.00 0.00 36.12 3.01
4865 7122 8.420374 TTCAACCATATATTCAGAACGAACTC 57.580 34.615 0.00 0.00 36.12 3.01
4867 7124 8.909923 TCAACCATATATTCAGAACGAACTCTA 58.090 33.333 0.00 0.00 36.12 2.43
4868 7125 8.969267 CAACCATATATTCAGAACGAACTCTAC 58.031 37.037 0.00 0.00 36.12 2.59
4870 7127 8.353684 ACCATATATTCAGAACGAACTCTACTG 58.646 37.037 0.00 0.00 36.12 2.74
4871 7128 7.810282 CCATATATTCAGAACGAACTCTACTGG 59.190 40.741 0.00 0.00 36.12 4.00
4874 7131 2.229062 TCAGAACGAACTCTACTGGCAG 59.771 50.000 14.16 14.16 0.00 4.85
4876 7133 2.628657 AGAACGAACTCTACTGGCAGTT 59.371 45.455 27.24 7.03 35.48 3.16
4877 7134 2.440539 ACGAACTCTACTGGCAGTTG 57.559 50.000 27.24 23.68 32.83 3.16
4878 7135 1.687123 ACGAACTCTACTGGCAGTTGT 59.313 47.619 27.24 18.47 32.83 3.32
4879 7136 2.102588 ACGAACTCTACTGGCAGTTGTT 59.897 45.455 27.24 24.82 32.83 2.83
4881 7138 3.728845 GAACTCTACTGGCAGTTGTTCA 58.271 45.455 31.89 16.92 34.75 3.18
4883 7140 2.434336 ACTCTACTGGCAGTTGTTCACA 59.566 45.455 27.24 4.49 0.00 3.58
4886 7143 4.820897 TCTACTGGCAGTTGTTCACATAG 58.179 43.478 27.24 13.42 0.00 2.23
4888 7145 2.153645 CTGGCAGTTGTTCACATAGCA 58.846 47.619 6.28 0.00 0.00 3.49
4889 7146 2.153645 TGGCAGTTGTTCACATAGCAG 58.846 47.619 0.00 0.00 0.00 4.24
4890 7147 2.224499 TGGCAGTTGTTCACATAGCAGA 60.224 45.455 0.00 0.00 0.00 4.26
4891 7148 2.813754 GGCAGTTGTTCACATAGCAGAA 59.186 45.455 0.00 0.00 0.00 3.02
4892 7149 3.253188 GGCAGTTGTTCACATAGCAGAAA 59.747 43.478 0.00 0.00 0.00 2.52
4894 7151 5.123820 GGCAGTTGTTCACATAGCAGAAATA 59.876 40.000 0.00 0.00 0.00 1.40
4895 7152 6.349280 GGCAGTTGTTCACATAGCAGAAATAA 60.349 38.462 0.00 0.00 0.00 1.40
4896 7153 7.083858 GCAGTTGTTCACATAGCAGAAATAAA 58.916 34.615 0.00 0.00 0.00 1.40
4898 7155 8.292448 CAGTTGTTCACATAGCAGAAATAAACT 58.708 33.333 0.00 0.00 30.64 2.66
4899 7156 9.502091 AGTTGTTCACATAGCAGAAATAAACTA 57.498 29.630 0.00 0.00 29.69 2.24
4900 7157 9.543018 GTTGTTCACATAGCAGAAATAAACTAC 57.457 33.333 0.00 0.00 0.00 2.73
4901 7158 8.840833 TGTTCACATAGCAGAAATAAACTACA 57.159 30.769 0.00 0.00 0.00 2.74
4902 7159 8.717821 TGTTCACATAGCAGAAATAAACTACAC 58.282 33.333 0.00 0.00 0.00 2.90
4905 7162 8.100791 TCACATAGCAGAAATAAACTACACCTT 58.899 33.333 0.00 0.00 0.00 3.50
4906 7163 8.730680 CACATAGCAGAAATAAACTACACCTTT 58.269 33.333 0.00 0.00 0.00 3.11
4938 7195 9.683069 AGTGATTTATGTTCTCACATTTTGTTC 57.317 29.630 4.90 0.00 41.16 3.18
4939 7196 8.915654 GTGATTTATGTTCTCACATTTTGTTCC 58.084 33.333 0.00 0.00 41.16 3.62
4940 7197 8.637099 TGATTTATGTTCTCACATTTTGTTCCA 58.363 29.630 0.00 0.00 41.16 3.53
4945 7243 4.241590 TCTCACATTTTGTTCCACATGC 57.758 40.909 0.00 0.00 0.00 4.06
4946 7244 3.005684 TCTCACATTTTGTTCCACATGCC 59.994 43.478 0.00 0.00 0.00 4.40
4947 7245 2.964464 TCACATTTTGTTCCACATGCCT 59.036 40.909 0.00 0.00 0.00 4.75
4948 7246 3.387374 TCACATTTTGTTCCACATGCCTT 59.613 39.130 0.00 0.00 0.00 4.35
4951 7249 5.933463 CACATTTTGTTCCACATGCCTTAAT 59.067 36.000 0.00 0.00 0.00 1.40
4953 7251 6.997476 ACATTTTGTTCCACATGCCTTAATTT 59.003 30.769 0.00 0.00 0.00 1.82
4954 7252 6.857777 TTTTGTTCCACATGCCTTAATTTG 57.142 33.333 0.00 0.00 0.00 2.32
4964 7262 7.012232 CCACATGCCTTAATTTGTCTTTGTTTT 59.988 33.333 0.00 0.00 0.00 2.43
4965 7263 9.039870 CACATGCCTTAATTTGTCTTTGTTTTA 57.960 29.630 0.00 0.00 0.00 1.52
4966 7264 9.777297 ACATGCCTTAATTTGTCTTTGTTTTAT 57.223 25.926 0.00 0.00 0.00 1.40
5139 7437 8.755696 TTTTGTGGCATAAACTATTCATCAAC 57.244 30.769 9.04 0.00 0.00 3.18
5193 7491 8.237267 GGATTTTTCTGTTTACAGGAGTATGTG 58.763 37.037 9.82 0.00 43.91 3.21
5229 7527 0.319555 TCGTCTCAAGGAAACCAGCG 60.320 55.000 0.00 0.00 0.00 5.18
5325 7623 4.751767 AATTGTGGGAAAACTGCTTCAA 57.248 36.364 0.00 0.00 0.00 2.69
5344 7644 7.231317 TGCTTCAATGAACAACTCTAGGAAAAT 59.769 33.333 0.00 0.00 0.00 1.82
5481 7781 3.357897 GTGATTTATCAAGCGCTTCAGC 58.642 45.455 22.21 5.43 38.75 4.26
5498 7799 5.400485 GCTTCAGCTTGTAATTTGTTCACAG 59.600 40.000 0.00 0.00 38.21 3.66
5657 7958 5.472137 CACATCACATCATGCATCCTATTGA 59.528 40.000 0.00 0.00 0.00 2.57
5673 7975 6.806217 TCCTATTGAAATTTTTGGGGGACTA 58.194 36.000 0.00 0.00 0.00 2.59
5693 7995 6.093633 GGACTATTGTGGTTGGAACATAAGAC 59.906 42.308 0.00 0.00 39.30 3.01
5698 8000 5.197451 TGTGGTTGGAACATAAGACTTTGT 58.803 37.500 0.00 0.00 39.30 2.83
5699 8001 5.654650 TGTGGTTGGAACATAAGACTTTGTT 59.345 36.000 12.57 12.57 39.30 2.83
5700 8002 6.183360 TGTGGTTGGAACATAAGACTTTGTTC 60.183 38.462 22.07 22.07 46.99 3.18
5701 8003 6.039382 GTGGTTGGAACATAAGACTTTGTTCT 59.961 38.462 25.44 7.98 46.92 3.01
5702 8004 7.227910 GTGGTTGGAACATAAGACTTTGTTCTA 59.772 37.037 25.44 21.54 46.92 2.10
5705 8007 8.974060 TTGGAACATAAGACTTTGTTCTAACT 57.026 30.769 25.44 6.56 46.92 2.24
5707 8009 9.403583 TGGAACATAAGACTTTGTTCTAACTTT 57.596 29.630 25.44 5.61 46.92 2.66
5714 8016 8.451908 AAGACTTTGTTCTAACTTTATGCTGT 57.548 30.769 0.00 0.00 0.00 4.40
5715 8017 9.555727 AAGACTTTGTTCTAACTTTATGCTGTA 57.444 29.630 0.00 0.00 0.00 2.74
5717 8019 8.904099 ACTTTGTTCTAACTTTATGCTGTACT 57.096 30.769 0.00 0.00 0.00 2.73
5718 8020 8.989980 ACTTTGTTCTAACTTTATGCTGTACTC 58.010 33.333 0.00 0.00 0.00 2.59
5719 8021 8.896320 TTTGTTCTAACTTTATGCTGTACTCA 57.104 30.769 0.00 0.00 0.00 3.41
5720 8022 9.502091 TTTGTTCTAACTTTATGCTGTACTCAT 57.498 29.630 0.00 0.49 0.00 2.90
5721 8023 8.479313 TGTTCTAACTTTATGCTGTACTCATG 57.521 34.615 10.21 0.00 0.00 3.07
5722 8024 7.549134 TGTTCTAACTTTATGCTGTACTCATGG 59.451 37.037 10.21 4.91 0.00 3.66
5723 8025 6.049149 TCTAACTTTATGCTGTACTCATGGC 58.951 40.000 10.21 0.00 0.00 4.40
5724 8026 4.220693 ACTTTATGCTGTACTCATGGCA 57.779 40.909 10.21 0.00 39.06 4.92
5725 8027 4.194640 ACTTTATGCTGTACTCATGGCAG 58.805 43.478 10.21 0.00 38.11 4.85
5726 8028 3.912496 TTATGCTGTACTCATGGCAGT 57.088 42.857 10.21 0.00 38.11 4.40
5727 8029 2.795231 ATGCTGTACTCATGGCAGTT 57.205 45.000 0.00 0.00 38.11 3.16
5728 8030 2.099141 TGCTGTACTCATGGCAGTTC 57.901 50.000 0.00 0.00 33.18 3.01
5729 8031 1.625315 TGCTGTACTCATGGCAGTTCT 59.375 47.619 0.00 0.00 33.18 3.01
5730 8032 2.038952 TGCTGTACTCATGGCAGTTCTT 59.961 45.455 0.00 0.00 33.18 2.52
5731 8033 2.417933 GCTGTACTCATGGCAGTTCTTG 59.582 50.000 0.00 0.00 33.18 3.02
5732 8034 3.668447 CTGTACTCATGGCAGTTCTTGT 58.332 45.455 0.00 0.00 0.00 3.16
5733 8035 3.402110 TGTACTCATGGCAGTTCTTGTG 58.598 45.455 0.00 0.00 0.00 3.33
5734 8036 1.242076 ACTCATGGCAGTTCTTGTGC 58.758 50.000 0.00 0.00 40.42 4.57
5735 8037 1.202855 ACTCATGGCAGTTCTTGTGCT 60.203 47.619 0.00 0.00 40.97 4.40
5736 8038 2.038952 ACTCATGGCAGTTCTTGTGCTA 59.961 45.455 0.00 0.00 40.97 3.49
5737 8039 3.076621 CTCATGGCAGTTCTTGTGCTAA 58.923 45.455 0.00 0.00 40.97 3.09
5738 8040 2.813754 TCATGGCAGTTCTTGTGCTAAC 59.186 45.455 0.00 0.00 40.97 2.34
5739 8041 2.638480 TGGCAGTTCTTGTGCTAACT 57.362 45.000 0.00 0.00 40.97 2.24
5740 8042 2.930950 TGGCAGTTCTTGTGCTAACTT 58.069 42.857 0.00 0.00 40.97 2.66
5741 8043 3.287222 TGGCAGTTCTTGTGCTAACTTT 58.713 40.909 0.00 0.00 40.97 2.66
5829 8135 4.149747 CACCAAACATAAATTTGCCACGAC 59.850 41.667 0.00 0.00 38.10 4.34
5860 8166 3.792124 GCCGCTTGTAAATTCCATGCTAC 60.792 47.826 11.60 0.00 32.51 3.58
5871 8177 1.009829 CCATGCTACGAGAAGTTGGC 58.990 55.000 0.00 0.00 0.00 4.52
6012 8318 7.541162 TGATATCGTAGAGAAGTTCGGAAAAA 58.459 34.615 0.00 0.00 43.63 1.94
6013 8319 7.487189 TGATATCGTAGAGAAGTTCGGAAAAAC 59.513 37.037 0.00 0.00 43.63 2.43
6238 8566 5.106157 ACACCTTCGCAAATAAGATTTCCAG 60.106 40.000 0.00 0.00 0.00 3.86
6254 8582 1.662044 CAGTTGCCAAGTTGGAGCC 59.338 57.895 26.52 11.15 40.96 4.70
6280 8608 4.547859 GCATCCGGCATCTCTTGT 57.452 55.556 0.00 0.00 43.97 3.16
6388 8716 6.017192 ACTTGAGTCAACCCTAGTAGATCAA 58.983 40.000 0.08 0.00 0.00 2.57
6502 8838 5.300539 ACATAGACTTCACGCTAGATCATGT 59.699 40.000 0.00 0.00 0.00 3.21
6586 9014 2.699954 TGATCCGAGTTTTCTGAAGGC 58.300 47.619 0.00 0.00 0.00 4.35
6592 9021 3.120060 CCGAGTTTTCTGAAGGCTTGATG 60.120 47.826 3.46 0.00 0.00 3.07
6604 9033 1.378882 GCTTGATGATTCTGCCGCCA 61.379 55.000 0.00 0.00 0.00 5.69
6628 9057 2.919043 CCGGGAAAGGGAGGATGG 59.081 66.667 0.00 0.00 0.00 3.51
6630 9059 1.527370 CGGGAAAGGGAGGATGGTC 59.473 63.158 0.00 0.00 0.00 4.02
6631 9060 0.983378 CGGGAAAGGGAGGATGGTCT 60.983 60.000 0.00 0.00 0.00 3.85
6632 9061 0.548510 GGGAAAGGGAGGATGGTCTG 59.451 60.000 0.00 0.00 0.00 3.51
6633 9062 1.290134 GGAAAGGGAGGATGGTCTGT 58.710 55.000 0.00 0.00 0.00 3.41
6634 9063 1.065126 GGAAAGGGAGGATGGTCTGTG 60.065 57.143 0.00 0.00 0.00 3.66
6635 9064 1.909302 GAAAGGGAGGATGGTCTGTGA 59.091 52.381 0.00 0.00 0.00 3.58
6706 9135 3.243737 GCCGGGTTCAGTTCATTCTTTTT 60.244 43.478 2.18 0.00 0.00 1.94
6741 9171 5.619981 GCGAAAAAGAAACATCTATGGCTGT 60.620 40.000 0.00 0.00 0.00 4.40
6768 9239 3.455327 CATGTCTCAGTCATGGCTGTAG 58.545 50.000 25.84 20.28 38.97 2.74
6773 9244 4.081972 GTCTCAGTCATGGCTGTAGAAAGA 60.082 45.833 25.84 17.74 37.70 2.52
6830 9312 1.821216 ACTAGCCGGTGTTTTCCATG 58.179 50.000 1.90 0.00 0.00 3.66
6833 9315 2.569354 GCCGGTGTTTTCCATGCCA 61.569 57.895 1.90 0.00 0.00 4.92
6838 9320 2.491693 CGGTGTTTTCCATGCCACTTAT 59.508 45.455 0.00 0.00 0.00 1.73
6870 9352 3.967987 AGTATAATGTTCGGCCCTCTTCT 59.032 43.478 0.00 0.00 0.00 2.85
6874 9356 4.608948 AATGTTCGGCCCTCTTCTATAG 57.391 45.455 0.00 0.00 0.00 1.31
6877 9359 3.773119 TGTTCGGCCCTCTTCTATAGTTT 59.227 43.478 0.00 0.00 0.00 2.66
6888 9370 8.759782 CCCTCTTCTATAGTTTAGACTTTTGGA 58.240 37.037 0.00 0.00 37.33 3.53
6894 9376 8.594550 TCTATAGTTTAGACTTTTGGAGCAACT 58.405 33.333 0.00 0.00 37.33 3.16
6911 9393 1.636148 ACTGGCTGGTGCATGAATTT 58.364 45.000 0.00 0.00 41.91 1.82
6944 9426 9.926158 AAATGCACATGTTTATATCTTGTTTCA 57.074 25.926 0.00 0.00 0.00 2.69
6945 9427 8.915871 ATGCACATGTTTATATCTTGTTTCAC 57.084 30.769 0.00 0.00 0.00 3.18
6946 9428 7.020602 TGCACATGTTTATATCTTGTTTCACG 58.979 34.615 0.00 0.00 0.00 4.35
6947 9429 7.021196 GCACATGTTTATATCTTGTTTCACGT 58.979 34.615 0.00 0.00 0.00 4.49
6948 9430 7.216317 GCACATGTTTATATCTTGTTTCACGTC 59.784 37.037 0.00 0.00 0.00 4.34
6949 9431 8.443160 CACATGTTTATATCTTGTTTCACGTCT 58.557 33.333 0.00 0.00 0.00 4.18
6950 9432 9.647797 ACATGTTTATATCTTGTTTCACGTCTA 57.352 29.630 0.00 0.00 0.00 2.59
6953 9435 9.701098 TGTTTATATCTTGTTTCACGTCTAAGT 57.299 29.630 0.00 0.00 0.00 2.24
6983 9465 9.820229 TTTTTAATAACTAGAACAATGCTCGTG 57.180 29.630 0.00 0.00 0.00 4.35
6984 9466 5.470845 AATAACTAGAACAATGCTCGTGC 57.529 39.130 1.71 1.71 40.20 5.34
6985 9467 1.350193 ACTAGAACAATGCTCGTGCG 58.650 50.000 4.84 0.00 43.34 5.34
6986 9468 1.336887 ACTAGAACAATGCTCGTGCGT 60.337 47.619 4.84 0.99 43.34 5.24
6991 9473 3.029810 AATGCTCGTGCGTTGCAA 58.970 50.000 15.59 0.00 45.65 4.08
6992 9474 1.370414 AATGCTCGTGCGTTGCAAC 60.370 52.632 19.89 19.89 45.65 4.17
6993 9475 2.057654 AATGCTCGTGCGTTGCAACA 62.058 50.000 28.01 8.05 45.65 3.33
6994 9476 2.425773 GCTCGTGCGTTGCAACAG 60.426 61.111 28.01 20.60 41.47 3.16
6995 9477 2.249309 CTCGTGCGTTGCAACAGG 59.751 61.111 28.01 15.48 41.47 4.00
6996 9478 3.240606 CTCGTGCGTTGCAACAGGG 62.241 63.158 28.01 13.80 41.47 4.45
6997 9479 3.582120 CGTGCGTTGCAACAGGGT 61.582 61.111 28.01 0.00 41.47 4.34
6998 9480 2.248135 CGTGCGTTGCAACAGGGTA 61.248 57.895 28.01 9.80 41.47 3.69
6999 9481 1.573829 CGTGCGTTGCAACAGGGTAT 61.574 55.000 28.01 0.00 41.47 2.73
7000 9482 1.444836 GTGCGTTGCAACAGGGTATA 58.555 50.000 28.01 4.13 41.47 1.47
7001 9483 1.807742 GTGCGTTGCAACAGGGTATAA 59.192 47.619 28.01 2.35 41.47 0.98
7002 9484 2.226912 GTGCGTTGCAACAGGGTATAAA 59.773 45.455 28.01 0.84 41.47 1.40
7003 9485 3.085533 TGCGTTGCAACAGGGTATAAAT 58.914 40.909 28.01 0.00 34.76 1.40
7004 9486 4.095185 GTGCGTTGCAACAGGGTATAAATA 59.905 41.667 28.01 0.00 41.47 1.40
7005 9487 4.884744 TGCGTTGCAACAGGGTATAAATAT 59.115 37.500 28.01 0.00 34.76 1.28
7006 9488 5.358442 TGCGTTGCAACAGGGTATAAATATT 59.642 36.000 28.01 0.00 34.76 1.28
7007 9489 5.912955 GCGTTGCAACAGGGTATAAATATTC 59.087 40.000 28.01 0.00 0.00 1.75
7008 9490 6.238648 GCGTTGCAACAGGGTATAAATATTCT 60.239 38.462 28.01 0.00 0.00 2.40
7009 9491 7.041644 GCGTTGCAACAGGGTATAAATATTCTA 60.042 37.037 28.01 0.00 0.00 2.10
7010 9492 8.495949 CGTTGCAACAGGGTATAAATATTCTAG 58.504 37.037 28.01 2.15 0.00 2.43
7011 9493 9.338622 GTTGCAACAGGGTATAAATATTCTAGT 57.661 33.333 24.52 0.00 0.00 2.57
7013 9495 9.991906 TGCAACAGGGTATAAATATTCTAGTAC 57.008 33.333 0.00 0.00 0.00 2.73
7014 9496 9.136952 GCAACAGGGTATAAATATTCTAGTACG 57.863 37.037 0.00 0.00 0.00 3.67
7032 9514 9.570468 TCTAGTACGTTAGATTATGATTCACCT 57.430 33.333 0.00 0.00 0.00 4.00
7033 9515 9.613957 CTAGTACGTTAGATTATGATTCACCTG 57.386 37.037 0.00 0.00 0.00 4.00
7034 9516 8.008513 AGTACGTTAGATTATGATTCACCTGT 57.991 34.615 0.00 0.00 0.00 4.00
7035 9517 8.136165 AGTACGTTAGATTATGATTCACCTGTC 58.864 37.037 0.00 0.00 0.00 3.51
7036 9518 6.873997 ACGTTAGATTATGATTCACCTGTCA 58.126 36.000 0.00 0.00 0.00 3.58
7037 9519 7.327975 ACGTTAGATTATGATTCACCTGTCAA 58.672 34.615 0.00 0.00 0.00 3.18
7038 9520 7.987458 ACGTTAGATTATGATTCACCTGTCAAT 59.013 33.333 0.00 0.00 0.00 2.57
7039 9521 9.476202 CGTTAGATTATGATTCACCTGTCAATA 57.524 33.333 0.00 0.00 0.00 1.90
7047 9529 6.958255 TGATTCACCTGTCAATAATAATGCG 58.042 36.000 0.00 0.00 0.00 4.73
7048 9530 6.765512 TGATTCACCTGTCAATAATAATGCGA 59.234 34.615 0.00 0.00 0.00 5.10
7049 9531 7.445096 TGATTCACCTGTCAATAATAATGCGAT 59.555 33.333 0.00 0.00 0.00 4.58
7050 9532 7.566760 TTCACCTGTCAATAATAATGCGATT 57.433 32.000 0.00 0.00 0.00 3.34
7051 9533 6.958255 TCACCTGTCAATAATAATGCGATTG 58.042 36.000 0.00 0.00 32.85 2.67
7052 9534 6.542005 TCACCTGTCAATAATAATGCGATTGT 59.458 34.615 0.00 0.00 33.27 2.71
7053 9535 6.634035 CACCTGTCAATAATAATGCGATTGTG 59.366 38.462 0.00 0.00 33.27 3.33
7054 9536 6.318648 ACCTGTCAATAATAATGCGATTGTGT 59.681 34.615 0.00 0.00 33.27 3.72
7055 9537 7.497579 ACCTGTCAATAATAATGCGATTGTGTA 59.502 33.333 0.00 0.00 33.27 2.90
7056 9538 8.341903 CCTGTCAATAATAATGCGATTGTGTAA 58.658 33.333 0.00 0.00 33.27 2.41
7057 9539 9.715123 CTGTCAATAATAATGCGATTGTGTAAA 57.285 29.630 0.00 0.00 33.27 2.01
7085 9567 8.408043 AATGTTTATCAAATTCTGACTGTGGA 57.592 30.769 0.00 0.00 36.69 4.02
7086 9568 8.585471 ATGTTTATCAAATTCTGACTGTGGAT 57.415 30.769 0.00 0.00 36.69 3.41
7087 9569 8.408043 TGTTTATCAAATTCTGACTGTGGATT 57.592 30.769 0.00 0.00 36.69 3.01
7088 9570 9.513906 TGTTTATCAAATTCTGACTGTGGATTA 57.486 29.630 0.00 0.00 36.69 1.75
7089 9571 9.774742 GTTTATCAAATTCTGACTGTGGATTAC 57.225 33.333 0.00 0.00 36.69 1.89
7090 9572 8.506168 TTATCAAATTCTGACTGTGGATTACC 57.494 34.615 0.00 0.00 36.69 2.85
7091 9573 6.126863 TCAAATTCTGACTGTGGATTACCT 57.873 37.500 0.00 0.00 37.04 3.08
7092 9574 6.542821 TCAAATTCTGACTGTGGATTACCTT 58.457 36.000 0.00 0.00 37.04 3.50
7093 9575 7.685481 TCAAATTCTGACTGTGGATTACCTTA 58.315 34.615 0.00 0.00 37.04 2.69
7094 9576 8.328758 TCAAATTCTGACTGTGGATTACCTTAT 58.671 33.333 0.00 0.00 37.04 1.73
7095 9577 8.400947 CAAATTCTGACTGTGGATTACCTTATG 58.599 37.037 0.00 0.00 37.04 1.90
7096 9578 6.620877 TTCTGACTGTGGATTACCTTATGT 57.379 37.500 0.00 0.00 37.04 2.29
7097 9579 6.620877 TCTGACTGTGGATTACCTTATGTT 57.379 37.500 0.00 0.00 37.04 2.71
7098 9580 7.016153 TCTGACTGTGGATTACCTTATGTTT 57.984 36.000 0.00 0.00 37.04 2.83
7099 9581 7.458397 TCTGACTGTGGATTACCTTATGTTTT 58.542 34.615 0.00 0.00 37.04 2.43
7100 9582 7.390440 TCTGACTGTGGATTACCTTATGTTTTG 59.610 37.037 0.00 0.00 37.04 2.44
7101 9583 7.227873 TGACTGTGGATTACCTTATGTTTTGA 58.772 34.615 0.00 0.00 37.04 2.69
7102 9584 7.888021 TGACTGTGGATTACCTTATGTTTTGAT 59.112 33.333 0.00 0.00 37.04 2.57
7103 9585 8.650143 ACTGTGGATTACCTTATGTTTTGATT 57.350 30.769 0.00 0.00 37.04 2.57
7104 9586 9.747898 ACTGTGGATTACCTTATGTTTTGATTA 57.252 29.630 0.00 0.00 37.04 1.75
7106 9588 9.967451 TGTGGATTACCTTATGTTTTGATTAGA 57.033 29.630 0.00 0.00 37.04 2.10
7114 9596 9.143155 ACCTTATGTTTTGATTAGAAGTTTGGT 57.857 29.630 0.00 0.00 0.00 3.67
7189 9671 7.979444 AATTATCATATACGTGGAAGGTTGG 57.021 36.000 0.00 0.00 35.89 3.77
7190 9672 6.734502 TTATCATATACGTGGAAGGTTGGA 57.265 37.500 0.00 0.00 35.89 3.53
7191 9673 4.395959 TCATATACGTGGAAGGTTGGAC 57.604 45.455 0.00 0.00 35.89 4.02
7192 9674 2.945447 TATACGTGGAAGGTTGGACG 57.055 50.000 0.00 0.00 35.89 4.79
7193 9675 1.259609 ATACGTGGAAGGTTGGACGA 58.740 50.000 0.00 0.00 35.89 4.20
7194 9676 1.039068 TACGTGGAAGGTTGGACGAA 58.961 50.000 0.00 0.00 35.89 3.85
7195 9677 0.249741 ACGTGGAAGGTTGGACGAAG 60.250 55.000 0.00 0.00 35.77 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.079819 CGGTCTTGTGATGGTCGCT 60.080 57.895 0.00 0.00 0.00 4.93
563 605 1.618343 TCCATCACGCACTCTTCTTCA 59.382 47.619 0.00 0.00 0.00 3.02
717 886 9.502091 GGGAAACTCCTTTTTAAAGCAATTTAT 57.498 29.630 0.00 0.00 36.57 1.40
718 887 8.710239 AGGGAAACTCCTTTTTAAAGCAATTTA 58.290 29.630 0.00 0.00 36.57 1.40
719 888 7.498900 CAGGGAAACTCCTTTTTAAAGCAATTT 59.501 33.333 0.00 0.00 36.57 1.82
720 889 6.992123 CAGGGAAACTCCTTTTTAAAGCAATT 59.008 34.615 0.00 0.00 36.57 2.32
721 890 6.326323 TCAGGGAAACTCCTTTTTAAAGCAAT 59.674 34.615 0.00 0.00 36.57 3.56
722 891 5.659079 TCAGGGAAACTCCTTTTTAAAGCAA 59.341 36.000 0.00 0.00 36.57 3.91
723 892 5.068591 GTCAGGGAAACTCCTTTTTAAAGCA 59.931 40.000 0.00 0.00 36.57 3.91
724 893 5.068591 TGTCAGGGAAACTCCTTTTTAAAGC 59.931 40.000 0.00 0.00 36.57 3.51
725 894 6.239036 CCTGTCAGGGAAACTCCTTTTTAAAG 60.239 42.308 11.46 0.00 36.57 1.85
726 895 5.596772 CCTGTCAGGGAAACTCCTTTTTAAA 59.403 40.000 11.46 0.00 36.57 1.52
727 896 5.137551 CCTGTCAGGGAAACTCCTTTTTAA 58.862 41.667 11.46 0.00 36.57 1.52
728 897 4.167307 ACCTGTCAGGGAAACTCCTTTTTA 59.833 41.667 23.06 0.00 40.58 1.52
729 898 3.052869 ACCTGTCAGGGAAACTCCTTTTT 60.053 43.478 23.06 0.00 40.58 1.94
730 899 2.514160 ACCTGTCAGGGAAACTCCTTTT 59.486 45.455 23.06 0.00 40.58 2.27
731 900 2.136026 ACCTGTCAGGGAAACTCCTTT 58.864 47.619 23.06 0.00 40.58 3.11
732 901 1.821088 ACCTGTCAGGGAAACTCCTT 58.179 50.000 23.06 0.00 40.58 3.36
733 902 2.715763 TACCTGTCAGGGAAACTCCT 57.284 50.000 23.06 1.76 40.58 3.69
734 903 3.782656 TTTACCTGTCAGGGAAACTCC 57.217 47.619 23.35 0.00 43.12 3.85
738 907 3.888930 CAGCTTTTTACCTGTCAGGGAAA 59.111 43.478 23.35 23.35 46.20 3.13
739 908 3.137544 TCAGCTTTTTACCTGTCAGGGAA 59.862 43.478 23.06 18.36 40.58 3.97
740 909 2.708861 TCAGCTTTTTACCTGTCAGGGA 59.291 45.455 23.06 12.44 40.58 4.20
741 910 3.140325 TCAGCTTTTTACCTGTCAGGG 57.860 47.619 23.06 5.07 40.58 4.45
742 911 3.253432 GGTTCAGCTTTTTACCTGTCAGG 59.747 47.826 17.88 17.88 42.49 3.86
743 912 3.882888 TGGTTCAGCTTTTTACCTGTCAG 59.117 43.478 0.00 0.00 0.00 3.51
744 913 3.630312 GTGGTTCAGCTTTTTACCTGTCA 59.370 43.478 0.00 0.00 0.00 3.58
745 914 3.303791 CGTGGTTCAGCTTTTTACCTGTC 60.304 47.826 0.00 0.00 0.00 3.51
746 915 2.616842 CGTGGTTCAGCTTTTTACCTGT 59.383 45.455 0.00 0.00 0.00 4.00
747 916 2.031157 CCGTGGTTCAGCTTTTTACCTG 60.031 50.000 0.00 0.00 0.00 4.00
748 917 2.158726 TCCGTGGTTCAGCTTTTTACCT 60.159 45.455 0.00 0.00 0.00 3.08
749 918 2.031420 GTCCGTGGTTCAGCTTTTTACC 60.031 50.000 0.00 0.00 0.00 2.85
750 919 2.349155 CGTCCGTGGTTCAGCTTTTTAC 60.349 50.000 0.00 0.00 0.00 2.01
751 920 1.868498 CGTCCGTGGTTCAGCTTTTTA 59.132 47.619 0.00 0.00 0.00 1.52
752 921 0.661020 CGTCCGTGGTTCAGCTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
1178 1350 1.494960 GGAGCAGGAGGAGTCTGATT 58.505 55.000 0.00 0.00 34.36 2.57
1183 1355 2.766229 GGGGGAGCAGGAGGAGTC 60.766 72.222 0.00 0.00 0.00 3.36
1201 1373 3.607299 TGAGACGGGGAGGGGGAA 61.607 66.667 0.00 0.00 0.00 3.97
1232 1672 3.001736 CAGCGAGGCTACTAAATTGCTTC 59.998 47.826 0.00 0.00 36.40 3.86
1246 1714 2.853914 GACGAACAACAGCGAGGC 59.146 61.111 0.00 0.00 0.00 4.70
1248 1716 0.386352 TACCGACGAACAACAGCGAG 60.386 55.000 0.00 0.00 0.00 5.03
1249 1717 0.386352 CTACCGACGAACAACAGCGA 60.386 55.000 0.00 0.00 0.00 4.93
1250 1718 1.941476 GCTACCGACGAACAACAGCG 61.941 60.000 0.00 0.00 0.00 5.18
1251 1719 1.623973 GGCTACCGACGAACAACAGC 61.624 60.000 0.00 0.00 0.00 4.40
1252 1720 0.038526 AGGCTACCGACGAACAACAG 60.039 55.000 0.00 0.00 0.00 3.16
1253 1721 0.390124 AAGGCTACCGACGAACAACA 59.610 50.000 0.00 0.00 0.00 3.33
1255 1723 0.675083 TGAAGGCTACCGACGAACAA 59.325 50.000 0.00 0.00 0.00 2.83
1256 1724 0.242825 CTGAAGGCTACCGACGAACA 59.757 55.000 0.00 0.00 0.00 3.18
1257 1725 0.243095 ACTGAAGGCTACCGACGAAC 59.757 55.000 0.00 0.00 0.00 3.95
1258 1726 1.825090 TACTGAAGGCTACCGACGAA 58.175 50.000 0.00 0.00 0.00 3.85
1259 1727 1.945394 GATACTGAAGGCTACCGACGA 59.055 52.381 0.00 0.00 0.00 4.20
1260 1728 1.674441 TGATACTGAAGGCTACCGACG 59.326 52.381 0.00 0.00 0.00 5.12
1261 1729 3.795623 TTGATACTGAAGGCTACCGAC 57.204 47.619 0.00 0.00 0.00 4.79
1262 1730 5.105106 TCAAATTGATACTGAAGGCTACCGA 60.105 40.000 0.00 0.00 0.00 4.69
1263 1731 5.116180 TCAAATTGATACTGAAGGCTACCG 58.884 41.667 0.00 0.00 0.00 4.02
1264 1732 7.283127 TCATTCAAATTGATACTGAAGGCTACC 59.717 37.037 0.00 0.00 32.41 3.18
1265 1733 8.213518 TCATTCAAATTGATACTGAAGGCTAC 57.786 34.615 0.00 0.00 32.41 3.58
1266 1734 8.985315 ATCATTCAAATTGATACTGAAGGCTA 57.015 30.769 0.00 0.00 32.41 3.93
1267 1735 7.893124 ATCATTCAAATTGATACTGAAGGCT 57.107 32.000 0.00 0.00 32.41 4.58
1268 1736 7.377928 CGAATCATTCAAATTGATACTGAAGGC 59.622 37.037 0.00 0.00 32.41 4.35
1269 1737 8.400947 ACGAATCATTCAAATTGATACTGAAGG 58.599 33.333 0.00 0.00 32.87 3.46
1270 1738 9.778993 AACGAATCATTCAAATTGATACTGAAG 57.221 29.630 0.00 1.17 32.87 3.02
1271 1739 9.558648 CAACGAATCATTCAAATTGATACTGAA 57.441 29.630 0.00 0.00 33.82 3.02
1272 1740 8.729756 ACAACGAATCATTCAAATTGATACTGA 58.270 29.630 11.26 1.51 0.00 3.41
1273 1741 8.900511 ACAACGAATCATTCAAATTGATACTG 57.099 30.769 11.26 0.00 0.00 2.74
1280 1748 9.663904 CGGAATATACAACGAATCATTCAAATT 57.336 29.630 0.00 0.00 0.00 1.82
1281 1749 8.836413 ACGGAATATACAACGAATCATTCAAAT 58.164 29.630 0.00 0.00 0.00 2.32
1282 1750 8.119845 CACGGAATATACAACGAATCATTCAAA 58.880 33.333 0.00 0.00 0.00 2.69
1283 1751 7.626446 CACGGAATATACAACGAATCATTCAA 58.374 34.615 0.00 0.00 0.00 2.69
1284 1752 6.292649 GCACGGAATATACAACGAATCATTCA 60.293 38.462 0.00 0.00 0.00 2.57
1285 1753 6.071463 GCACGGAATATACAACGAATCATTC 58.929 40.000 0.00 0.00 0.00 2.67
1286 1754 5.333035 CGCACGGAATATACAACGAATCATT 60.333 40.000 0.00 0.00 0.00 2.57
1686 2185 7.336427 TGAAAAACTAAACTGGTAAGACGGAAA 59.664 33.333 0.00 0.00 0.00 3.13
1690 2189 9.590088 GTAATGAAAAACTAAACTGGTAAGACG 57.410 33.333 0.00 0.00 0.00 4.18
1732 2232 4.021368 GTCTGTCCAGCTAGAACCTACAAA 60.021 45.833 0.00 0.00 0.00 2.83
1882 2383 4.078537 TGGTGTTCATTGTACTTCCATGG 58.921 43.478 4.97 4.97 0.00 3.66
2053 2554 1.475034 GGGCCGCAGATCTTCATAACA 60.475 52.381 0.00 0.00 0.00 2.41
2079 3766 4.083003 TCAACATATGTTTTGCCTCGGTTC 60.083 41.667 18.50 0.00 35.83 3.62
2111 3798 5.530171 AGCAAGTTTCTGATATATGTGGCAG 59.470 40.000 0.00 0.00 0.00 4.85
2146 3833 7.147897 GGGCTTTATCCAGCATTTAAGTTAACT 60.148 37.037 1.12 1.12 42.10 2.24
2257 3945 4.970662 TGCATAGAACCTCTGCATTTTC 57.029 40.909 3.39 0.00 38.36 2.29
2265 3953 7.577303 TCTCCAATAAATTGCATAGAACCTCT 58.423 34.615 0.00 0.00 36.48 3.69
2272 3960 8.442632 TCTCAACTCTCCAATAAATTGCATAG 57.557 34.615 0.00 0.00 36.48 2.23
2295 3983 9.590451 CATTACTGTTTGGCAATGAATTTATCT 57.410 29.630 0.00 0.00 31.44 1.98
2593 4669 9.979578 AAATGCAATTAGTCAATAACAGAACAA 57.020 25.926 0.00 0.00 33.67 2.83
2873 4953 8.935844 AGGCTGTTTAGTTTTTGAAAGAAAAAG 58.064 29.630 0.00 0.00 31.05 2.27
2879 4959 9.394477 GTGTATAGGCTGTTTAGTTTTTGAAAG 57.606 33.333 0.00 0.00 0.00 2.62
2880 4960 8.071368 CGTGTATAGGCTGTTTAGTTTTTGAAA 58.929 33.333 0.00 0.00 0.00 2.69
2881 4961 7.441760 TCGTGTATAGGCTGTTTAGTTTTTGAA 59.558 33.333 0.00 0.00 0.00 2.69
2922 5072 7.753309 TTGATTGATTTAGAAGGAAAACGGA 57.247 32.000 0.00 0.00 0.00 4.69
2923 5073 7.062255 GCTTTGATTGATTTAGAAGGAAAACGG 59.938 37.037 0.00 0.00 0.00 4.44
2924 5074 7.062255 GGCTTTGATTGATTTAGAAGGAAAACG 59.938 37.037 0.00 0.00 0.00 3.60
2925 5075 7.872483 TGGCTTTGATTGATTTAGAAGGAAAAC 59.128 33.333 0.00 0.00 0.00 2.43
2926 5076 7.961351 TGGCTTTGATTGATTTAGAAGGAAAA 58.039 30.769 0.00 0.00 0.00 2.29
2927 5077 7.537596 TGGCTTTGATTGATTTAGAAGGAAA 57.462 32.000 0.00 0.00 0.00 3.13
2928 5078 6.350445 GCTGGCTTTGATTGATTTAGAAGGAA 60.350 38.462 0.00 0.00 0.00 3.36
2929 5079 5.126061 GCTGGCTTTGATTGATTTAGAAGGA 59.874 40.000 0.00 0.00 0.00 3.36
2930 5080 5.105635 TGCTGGCTTTGATTGATTTAGAAGG 60.106 40.000 0.00 0.00 0.00 3.46
2931 5081 5.957798 TGCTGGCTTTGATTGATTTAGAAG 58.042 37.500 0.00 0.00 0.00 2.85
2932 5082 5.622914 GCTGCTGGCTTTGATTGATTTAGAA 60.623 40.000 0.00 0.00 38.06 2.10
2933 5083 4.142315 GCTGCTGGCTTTGATTGATTTAGA 60.142 41.667 0.00 0.00 38.06 2.10
2934 5084 4.110482 GCTGCTGGCTTTGATTGATTTAG 58.890 43.478 0.00 0.00 38.06 1.85
2935 5085 3.510753 TGCTGCTGGCTTTGATTGATTTA 59.489 39.130 0.00 0.00 42.39 1.40
2936 5086 2.300723 TGCTGCTGGCTTTGATTGATTT 59.699 40.909 0.00 0.00 42.39 2.17
2937 5087 1.897133 TGCTGCTGGCTTTGATTGATT 59.103 42.857 0.00 0.00 42.39 2.57
2938 5088 1.476891 CTGCTGCTGGCTTTGATTGAT 59.523 47.619 0.00 0.00 42.39 2.57
2939 5089 0.885879 CTGCTGCTGGCTTTGATTGA 59.114 50.000 0.00 0.00 42.39 2.57
2940 5090 0.736325 GCTGCTGCTGGCTTTGATTG 60.736 55.000 8.53 0.00 42.39 2.67
2941 5091 1.183030 TGCTGCTGCTGGCTTTGATT 61.183 50.000 17.00 0.00 42.39 2.57
2942 5092 1.595993 CTGCTGCTGCTGGCTTTGAT 61.596 55.000 17.00 0.00 42.39 2.57
2943 5093 2.203379 TGCTGCTGCTGGCTTTGA 60.203 55.556 17.00 0.00 42.39 2.69
2944 5094 2.258591 CTGCTGCTGCTGGCTTTG 59.741 61.111 17.00 6.11 42.39 2.77
2945 5095 3.681835 GCTGCTGCTGCTGGCTTT 61.682 61.111 22.10 0.00 42.39 3.51
2955 5105 1.171308 TTGAAAGATCCAGCTGCTGC 58.829 50.000 23.86 10.69 40.05 5.25
2956 5106 3.928727 TTTTGAAAGATCCAGCTGCTG 57.071 42.857 22.44 22.44 0.00 4.41
2974 5124 8.771920 AGAACGGAATTCAAAAGTTTCTTTTT 57.228 26.923 7.93 0.00 40.09 1.94
2975 5125 9.297586 GTAGAACGGAATTCAAAAGTTTCTTTT 57.702 29.630 7.93 2.21 40.09 2.27
2976 5126 8.683615 AGTAGAACGGAATTCAAAAGTTTCTTT 58.316 29.630 7.93 0.00 40.09 2.52
2977 5127 8.129211 CAGTAGAACGGAATTCAAAAGTTTCTT 58.871 33.333 7.93 2.02 40.09 2.52
2978 5128 7.497909 TCAGTAGAACGGAATTCAAAAGTTTCT 59.502 33.333 7.93 7.51 40.09 2.52
2979 5129 7.636326 TCAGTAGAACGGAATTCAAAAGTTTC 58.364 34.615 7.93 0.63 40.09 2.78
2980 5130 7.562454 TCAGTAGAACGGAATTCAAAAGTTT 57.438 32.000 7.93 0.00 40.09 2.66
2981 5131 7.562454 TTCAGTAGAACGGAATTCAAAAGTT 57.438 32.000 7.93 7.55 40.09 2.66
2982 5132 7.228706 ACATTCAGTAGAACGGAATTCAAAAGT 59.771 33.333 7.93 0.00 39.39 2.66
2983 5133 7.584987 ACATTCAGTAGAACGGAATTCAAAAG 58.415 34.615 7.93 0.00 39.39 2.27
2984 5134 7.308348 GGACATTCAGTAGAACGGAATTCAAAA 60.308 37.037 7.93 0.00 39.39 2.44
2985 5135 6.148811 GGACATTCAGTAGAACGGAATTCAAA 59.851 38.462 7.93 0.00 39.39 2.69
2986 5136 5.642063 GGACATTCAGTAGAACGGAATTCAA 59.358 40.000 7.93 0.00 39.39 2.69
2987 5137 5.046591 AGGACATTCAGTAGAACGGAATTCA 60.047 40.000 7.93 0.00 39.39 2.57
2988 5138 5.420409 AGGACATTCAGTAGAACGGAATTC 58.580 41.667 0.00 0.00 39.39 2.17
2989 5139 5.420409 GAGGACATTCAGTAGAACGGAATT 58.580 41.667 3.18 0.00 39.39 2.17
2990 5140 4.141914 GGAGGACATTCAGTAGAACGGAAT 60.142 45.833 0.43 0.43 42.29 3.01
2991 5141 3.194968 GGAGGACATTCAGTAGAACGGAA 59.805 47.826 0.00 0.00 36.77 4.30
3037 5187 6.645790 AAAAGAAGGACATGGATCATATGC 57.354 37.500 0.00 3.35 0.00 3.14
3191 5441 5.048504 GCTGAAAGTGAGGATTTGATCACAA 60.049 40.000 0.00 0.00 46.63 3.33
3247 5497 3.822594 TGAACATGGTAAACACGATGC 57.177 42.857 0.00 0.00 30.44 3.91
3472 5722 5.675684 ACCCAGCCATTAAAACATAAAGG 57.324 39.130 0.00 0.00 0.00 3.11
3634 5884 4.219033 GACAAACAAACATGTTAGCTCGG 58.781 43.478 12.39 3.24 0.00 4.63
3717 5967 8.102047 GGATCAAGTATTCTCTGGATCAATGAT 58.898 37.037 11.56 0.00 34.34 2.45
3792 6042 5.697178 TGTCGTAACTGCTAAATGTTGCTAA 59.303 36.000 0.00 0.00 0.00 3.09
3825 6075 1.949525 TCTGGCAGCTTCAACTCAAAC 59.050 47.619 10.34 0.00 0.00 2.93
3969 6219 7.129457 TCCATGCTGTCTGAACTAGATTTAT 57.871 36.000 0.00 0.00 37.83 1.40
4085 6335 4.350368 TCTTGCTAAACCATGTGTCTGA 57.650 40.909 0.00 0.00 0.00 3.27
4117 6367 5.497464 TTTCATCCTCACCATGTCTAACA 57.503 39.130 0.00 0.00 0.00 2.41
4132 6382 3.040147 TCCAGACTGACGTTTTCATCC 57.960 47.619 3.32 0.00 32.17 3.51
4191 6441 7.270365 CACTATGCACCAAAACAATACTTTACG 59.730 37.037 0.00 0.00 0.00 3.18
4241 6494 5.840940 AATTTAACGAAGGACTCTGAACG 57.159 39.130 0.00 0.00 0.00 3.95
4477 6731 7.837863 TCTATATAATCTTTACCCAGCGAAGG 58.162 38.462 0.00 0.00 0.00 3.46
4538 6795 0.453390 GCATGGGAAAGTGCTGCTAC 59.547 55.000 0.00 0.00 38.30 3.58
4587 6844 5.359860 CCTAACATCATAAAAGTTGGGGGAC 59.640 44.000 0.00 0.00 39.40 4.46
4599 6856 5.359860 TCAACTCTCGAGCCTAACATCATAA 59.640 40.000 7.81 0.00 0.00 1.90
4601 6858 3.701542 TCAACTCTCGAGCCTAACATCAT 59.298 43.478 7.81 0.00 0.00 2.45
4629 6886 7.390027 AGTACTGAATACTGACAATGCTCTTT 58.610 34.615 0.00 0.00 42.90 2.52
4667 6924 6.944290 GGGTTAAGCCTTCTTCCTTAAAGTAA 59.056 38.462 16.59 0.00 35.86 2.24
4684 6941 1.176619 AAACACAGGCCGGGTTAAGC 61.177 55.000 14.23 0.00 0.00 3.09
4693 6950 0.320683 GCCAATGGAAAACACAGGCC 60.321 55.000 2.05 0.00 43.14 5.19
4695 6952 1.341080 AGGCCAATGGAAAACACAGG 58.659 50.000 5.01 0.00 0.00 4.00
4712 6969 7.921786 TCTCAAACAACTGATAATACCAAGG 57.078 36.000 0.00 0.00 0.00 3.61
4734 6991 6.491714 AATCTACATAGACCATGCAGTTCT 57.508 37.500 0.00 0.00 38.29 3.01
4737 6994 6.708054 GCTTAAATCTACATAGACCATGCAGT 59.292 38.462 0.00 0.00 38.29 4.40
4861 7118 3.118408 TGTGAACAACTGCCAGTAGAGTT 60.118 43.478 0.00 3.82 32.48 3.01
4862 7119 2.434336 TGTGAACAACTGCCAGTAGAGT 59.566 45.455 0.00 0.00 0.00 3.24
4863 7120 3.111853 TGTGAACAACTGCCAGTAGAG 57.888 47.619 0.00 0.00 0.00 2.43
4864 7121 3.769739 ATGTGAACAACTGCCAGTAGA 57.230 42.857 0.00 0.00 0.00 2.59
4865 7122 3.372206 GCTATGTGAACAACTGCCAGTAG 59.628 47.826 0.00 0.00 0.00 2.57
4867 7124 2.154462 GCTATGTGAACAACTGCCAGT 58.846 47.619 0.00 0.00 0.00 4.00
4868 7125 2.153645 TGCTATGTGAACAACTGCCAG 58.846 47.619 0.00 0.00 0.00 4.85
4870 7127 2.426522 TCTGCTATGTGAACAACTGCC 58.573 47.619 0.00 0.00 0.00 4.85
4871 7128 4.488126 TTTCTGCTATGTGAACAACTGC 57.512 40.909 0.00 0.00 0.00 4.40
4874 7131 9.543018 GTAGTTTATTTCTGCTATGTGAACAAC 57.457 33.333 0.00 0.00 0.00 3.32
4876 7133 8.717821 GTGTAGTTTATTTCTGCTATGTGAACA 58.282 33.333 0.00 0.00 0.00 3.18
4877 7134 8.175716 GGTGTAGTTTATTTCTGCTATGTGAAC 58.824 37.037 0.00 0.00 0.00 3.18
4878 7135 8.100791 AGGTGTAGTTTATTTCTGCTATGTGAA 58.899 33.333 0.00 0.00 0.00 3.18
4879 7136 7.620880 AGGTGTAGTTTATTTCTGCTATGTGA 58.379 34.615 0.00 0.00 0.00 3.58
4881 7138 8.863872 AAAGGTGTAGTTTATTTCTGCTATGT 57.136 30.769 0.00 0.00 0.00 2.29
4915 7172 8.915654 GTGGAACAAAATGTGAGAACATAAATC 58.084 33.333 0.00 0.00 44.16 2.17
4916 7173 8.816640 GTGGAACAAAATGTGAGAACATAAAT 57.183 30.769 0.00 0.00 44.16 1.40
4935 7192 5.391312 AGACAAATTAAGGCATGTGGAAC 57.609 39.130 0.00 0.00 37.35 3.62
4936 7193 6.183360 ACAAAGACAAATTAAGGCATGTGGAA 60.183 34.615 0.00 0.00 0.00 3.53
4937 7194 5.304101 ACAAAGACAAATTAAGGCATGTGGA 59.696 36.000 0.00 0.00 0.00 4.02
4938 7195 5.540911 ACAAAGACAAATTAAGGCATGTGG 58.459 37.500 0.00 0.00 0.00 4.17
4939 7196 7.481275 AAACAAAGACAAATTAAGGCATGTG 57.519 32.000 0.00 0.00 0.00 3.21
4940 7197 9.777297 ATAAAACAAAGACAAATTAAGGCATGT 57.223 25.926 0.00 0.00 0.00 3.21
4971 7269 6.105397 AGCACAAAAATGATTTGTCCAGAT 57.895 33.333 3.72 0.00 40.30 2.90
4973 7271 5.987347 AGAAGCACAAAAATGATTTGTCCAG 59.013 36.000 3.72 0.00 40.30 3.86
4975 7273 5.984926 TGAGAAGCACAAAAATGATTTGTCC 59.015 36.000 3.72 0.00 40.30 4.02
4978 7276 7.473027 AACTGAGAAGCACAAAAATGATTTG 57.527 32.000 0.00 0.00 35.64 2.32
4981 7279 7.043565 ACAAAACTGAGAAGCACAAAAATGAT 58.956 30.769 0.00 0.00 0.00 2.45
4982 7280 6.397272 ACAAAACTGAGAAGCACAAAAATGA 58.603 32.000 0.00 0.00 0.00 2.57
4986 7284 5.407995 CCAAACAAAACTGAGAAGCACAAAA 59.592 36.000 0.00 0.00 0.00 2.44
5193 7491 0.721483 CGAAGCGAGTTTGGCGTTTC 60.721 55.000 0.00 0.00 42.80 2.78
5229 7527 7.708752 ACTTCAATTGTAGCTGCTATAGTCTTC 59.291 37.037 13.20 0.00 0.00 2.87
5481 7781 6.255215 ACGTTGTCTGTGAACAAATTACAAG 58.745 36.000 0.00 0.00 40.62 3.16
5498 7799 8.817100 TCATGAGAATATATGTGAAACGTTGTC 58.183 33.333 0.00 2.49 42.39 3.18
5657 7958 4.910913 ACCACAATAGTCCCCCAAAAATTT 59.089 37.500 0.00 0.00 0.00 1.82
5673 7975 6.323739 ACAAAGTCTTATGTTCCAACCACAAT 59.676 34.615 0.00 0.00 0.00 2.71
5693 7995 8.988934 TGAGTACAGCATAAAGTTAGAACAAAG 58.011 33.333 0.00 0.00 0.00 2.77
5698 8000 6.538742 GCCATGAGTACAGCATAAAGTTAGAA 59.461 38.462 0.00 0.00 0.00 2.10
5699 8001 6.049149 GCCATGAGTACAGCATAAAGTTAGA 58.951 40.000 0.00 0.00 0.00 2.10
5700 8002 5.817296 TGCCATGAGTACAGCATAAAGTTAG 59.183 40.000 0.00 0.00 0.00 2.34
5701 8003 5.739959 TGCCATGAGTACAGCATAAAGTTA 58.260 37.500 0.00 0.00 0.00 2.24
5702 8004 4.588899 TGCCATGAGTACAGCATAAAGTT 58.411 39.130 0.00 0.00 0.00 2.66
5704 8006 4.194640 ACTGCCATGAGTACAGCATAAAG 58.805 43.478 0.00 0.43 34.72 1.85
5705 8007 4.220693 ACTGCCATGAGTACAGCATAAA 57.779 40.909 0.00 0.00 34.72 1.40
5707 8009 3.452264 AGAACTGCCATGAGTACAGCATA 59.548 43.478 0.00 0.00 34.72 3.14
5709 8011 1.625315 AGAACTGCCATGAGTACAGCA 59.375 47.619 0.00 0.00 34.72 4.41
5710 8012 2.393271 AGAACTGCCATGAGTACAGC 57.607 50.000 0.00 0.00 34.72 4.40
5711 8013 3.434641 CACAAGAACTGCCATGAGTACAG 59.565 47.826 0.00 0.00 37.45 2.74
5713 8015 2.160417 GCACAAGAACTGCCATGAGTAC 59.840 50.000 0.00 0.00 0.00 2.73
5714 8016 2.038952 AGCACAAGAACTGCCATGAGTA 59.961 45.455 0.00 0.00 35.01 2.59
5715 8017 1.202855 AGCACAAGAACTGCCATGAGT 60.203 47.619 0.00 0.00 35.01 3.41
5717 8019 2.813754 GTTAGCACAAGAACTGCCATGA 59.186 45.455 0.00 0.00 35.01 3.07
5718 8020 2.816087 AGTTAGCACAAGAACTGCCATG 59.184 45.455 0.00 0.00 34.61 3.66
5719 8021 3.146104 AGTTAGCACAAGAACTGCCAT 57.854 42.857 0.00 0.00 34.61 4.40
5720 8022 2.638480 AGTTAGCACAAGAACTGCCA 57.362 45.000 0.00 0.00 34.61 4.92
5721 8023 3.990318 AAAGTTAGCACAAGAACTGCC 57.010 42.857 0.00 0.00 36.05 4.85
5722 8024 6.092807 AGCTATAAAGTTAGCACAAGAACTGC 59.907 38.462 6.28 0.00 45.72 4.40
5723 8025 7.118390 ACAGCTATAAAGTTAGCACAAGAACTG 59.882 37.037 6.28 0.00 45.72 3.16
5724 8026 7.162082 ACAGCTATAAAGTTAGCACAAGAACT 58.838 34.615 6.28 0.00 45.72 3.01
5725 8027 7.117812 TGACAGCTATAAAGTTAGCACAAGAAC 59.882 37.037 6.28 0.00 45.72 3.01
5726 8028 7.158697 TGACAGCTATAAAGTTAGCACAAGAA 58.841 34.615 6.28 0.00 45.72 2.52
5727 8029 6.697395 TGACAGCTATAAAGTTAGCACAAGA 58.303 36.000 6.28 0.00 45.72 3.02
5728 8030 6.968131 TGACAGCTATAAAGTTAGCACAAG 57.032 37.500 6.28 0.00 45.72 3.16
5729 8031 8.258007 ACTATGACAGCTATAAAGTTAGCACAA 58.742 33.333 6.28 0.00 45.72 3.33
5730 8032 7.782049 ACTATGACAGCTATAAAGTTAGCACA 58.218 34.615 6.28 4.12 45.72 4.57
5731 8033 8.649973 AACTATGACAGCTATAAAGTTAGCAC 57.350 34.615 6.28 0.00 45.72 4.40
5732 8034 9.967346 CTAACTATGACAGCTATAAAGTTAGCA 57.033 33.333 16.02 0.00 45.72 3.49
5733 8035 9.413048 CCTAACTATGACAGCTATAAAGTTAGC 57.587 37.037 19.64 0.00 44.03 3.09
5829 8135 5.288472 GGAATTTACAAGCGGCTTATGTTTG 59.712 40.000 15.93 5.18 0.00 2.93
5860 8166 1.005340 GATGAGCAGCCAACTTCTCG 58.995 55.000 0.00 0.00 38.84 4.04
5871 8177 8.068977 GCTTAAAGATCAATTACTGATGAGCAG 58.931 37.037 0.00 0.00 45.23 4.24
5925 8231 6.321435 ACAAACTTAAAGCCTAGCACTTTTCT 59.679 34.615 12.53 0.00 38.31 2.52
5926 8232 6.504398 ACAAACTTAAAGCCTAGCACTTTTC 58.496 36.000 12.53 0.00 38.31 2.29
6172 8500 2.072298 GCAAGTAGTTGTCCTCAGCAG 58.928 52.381 11.85 0.00 35.92 4.24
6224 8552 6.670695 ACTTGGCAACTGGAAATCTTATTT 57.329 33.333 0.00 0.00 37.61 1.40
6238 8566 0.032540 CAAGGCTCCAACTTGGCAAC 59.967 55.000 2.52 0.00 41.16 4.17
6280 8608 0.955428 GTGGATCAGCAAGCGGTTCA 60.955 55.000 0.00 0.00 0.00 3.18
6406 8734 4.568152 ACAATACTGTCAAACCTGCAAC 57.432 40.909 0.00 0.00 0.00 4.17
6412 8740 9.216117 ACAAACTATCTACAATACTGTCAAACC 57.784 33.333 0.00 0.00 36.96 3.27
6502 8838 6.323996 ACACTTACAGCCAGCTTATCTATACA 59.676 38.462 0.00 0.00 0.00 2.29
6586 9014 1.097232 TTGGCGGCAGAATCATCAAG 58.903 50.000 12.87 0.00 0.00 3.02
6612 9041 0.983378 AGACCATCCTCCCTTTCCCG 60.983 60.000 0.00 0.00 0.00 5.14
6628 9057 4.433615 TCTTCTTGTTCACAGTCACAGAC 58.566 43.478 0.00 0.00 0.00 3.51
6630 9059 5.757320 AGATTCTTCTTGTTCACAGTCACAG 59.243 40.000 0.00 0.00 0.00 3.66
6631 9060 5.674525 AGATTCTTCTTGTTCACAGTCACA 58.325 37.500 0.00 0.00 0.00 3.58
6632 9061 7.816995 AGATAGATTCTTCTTGTTCACAGTCAC 59.183 37.037 0.00 0.00 33.17 3.67
6633 9062 7.816513 CAGATAGATTCTTCTTGTTCACAGTCA 59.183 37.037 0.00 0.00 33.17 3.41
6634 9063 8.031864 TCAGATAGATTCTTCTTGTTCACAGTC 58.968 37.037 0.00 0.00 33.17 3.51
6635 9064 7.901029 TCAGATAGATTCTTCTTGTTCACAGT 58.099 34.615 0.00 0.00 33.17 3.55
6676 9105 0.605589 ACTGAACCCGGCTAAACAGC 60.606 55.000 0.00 0.00 0.00 4.40
6678 9107 1.141254 TGAACTGAACCCGGCTAAACA 59.859 47.619 0.00 0.00 0.00 2.83
6679 9108 1.886886 TGAACTGAACCCGGCTAAAC 58.113 50.000 0.00 0.00 0.00 2.01
6690 9119 6.790232 ACCCTTGAAAAAGAATGAACTGAA 57.210 33.333 0.00 0.00 0.00 3.02
6706 9135 3.495434 TCTTTTTCGCCTAACCCTTGA 57.505 42.857 0.00 0.00 0.00 3.02
6741 9171 2.697229 CCATGACTGAGACATGCCTCTA 59.303 50.000 17.37 0.00 42.31 2.43
6768 9239 3.003480 CAAATCGAGGTCCTGGTCTTTC 58.997 50.000 0.00 0.00 0.00 2.62
6773 9244 3.009033 TCAAATCAAATCGAGGTCCTGGT 59.991 43.478 0.00 0.00 0.00 4.00
6838 9320 6.261381 GGCCGAACATTATACTCCAACATTTA 59.739 38.462 0.00 0.00 0.00 1.40
6858 9340 4.826183 GTCTAAACTATAGAAGAGGGCCGA 59.174 45.833 6.78 0.00 0.00 5.54
6870 9352 7.606456 CCAGTTGCTCCAAAAGTCTAAACTATA 59.394 37.037 0.00 0.00 33.48 1.31
6874 9356 4.793028 GCCAGTTGCTCCAAAAGTCTAAAC 60.793 45.833 0.00 0.00 36.87 2.01
6877 9359 2.504367 GCCAGTTGCTCCAAAAGTCTA 58.496 47.619 0.00 0.00 36.87 2.59
6894 9376 5.186603 TGTTATTAAATTCATGCACCAGCCA 59.813 36.000 0.00 0.00 41.13 4.75
6957 9439 9.820229 CACGAGCATTGTTCTAGTTATTAAAAA 57.180 29.630 0.00 0.00 0.00 1.94
6958 9440 7.960738 GCACGAGCATTGTTCTAGTTATTAAAA 59.039 33.333 0.00 0.00 41.58 1.52
6959 9441 7.461107 GCACGAGCATTGTTCTAGTTATTAAA 58.539 34.615 0.00 0.00 41.58 1.52
6960 9442 6.237728 CGCACGAGCATTGTTCTAGTTATTAA 60.238 38.462 5.50 0.00 42.27 1.40
6961 9443 5.231357 CGCACGAGCATTGTTCTAGTTATTA 59.769 40.000 5.50 0.00 42.27 0.98
6962 9444 4.032900 CGCACGAGCATTGTTCTAGTTATT 59.967 41.667 5.50 0.00 42.27 1.40
6963 9445 3.551890 CGCACGAGCATTGTTCTAGTTAT 59.448 43.478 5.50 0.00 42.27 1.89
6964 9446 2.921121 CGCACGAGCATTGTTCTAGTTA 59.079 45.455 5.50 0.00 42.27 2.24
6965 9447 1.726791 CGCACGAGCATTGTTCTAGTT 59.273 47.619 5.50 0.00 42.27 2.24
6966 9448 1.336887 ACGCACGAGCATTGTTCTAGT 60.337 47.619 5.50 0.00 42.27 2.57
6967 9449 1.350193 ACGCACGAGCATTGTTCTAG 58.650 50.000 5.50 0.00 42.27 2.43
6968 9450 1.459209 CAACGCACGAGCATTGTTCTA 59.541 47.619 5.46 0.00 38.99 2.10
6969 9451 0.235665 CAACGCACGAGCATTGTTCT 59.764 50.000 5.46 0.00 38.99 3.01
6970 9452 1.330080 GCAACGCACGAGCATTGTTC 61.330 55.000 14.66 0.00 45.13 3.18
6971 9453 1.370414 GCAACGCACGAGCATTGTT 60.370 52.632 14.66 3.39 45.13 2.83
6972 9454 2.057654 TTGCAACGCACGAGCATTGT 62.058 50.000 14.66 0.00 45.13 2.71
6973 9455 1.370293 TTGCAACGCACGAGCATTG 60.370 52.632 9.29 9.29 46.03 2.82
6974 9456 1.370414 GTTGCAACGCACGAGCATT 60.370 52.632 14.90 0.00 38.71 3.56
6975 9457 2.252260 GTTGCAACGCACGAGCAT 59.748 55.556 14.90 0.00 38.71 3.79
6976 9458 3.166953 CTGTTGCAACGCACGAGCA 62.167 57.895 23.79 9.96 38.71 4.26
6977 9459 2.425773 CTGTTGCAACGCACGAGC 60.426 61.111 23.79 0.00 38.71 5.03
6978 9460 2.249309 CCTGTTGCAACGCACGAG 59.751 61.111 23.79 14.86 38.71 4.18
6979 9461 2.646117 TACCCTGTTGCAACGCACGA 62.646 55.000 23.79 5.75 38.71 4.35
6980 9462 1.573829 ATACCCTGTTGCAACGCACG 61.574 55.000 23.79 13.46 38.71 5.34
6981 9463 1.444836 TATACCCTGTTGCAACGCAC 58.555 50.000 23.79 1.83 38.71 5.34
6982 9464 2.186532 TTATACCCTGTTGCAACGCA 57.813 45.000 23.79 7.32 36.47 5.24
6983 9465 3.775661 ATTTATACCCTGTTGCAACGC 57.224 42.857 23.79 2.38 0.00 4.84
6984 9466 7.259290 AGAATATTTATACCCTGTTGCAACG 57.741 36.000 23.79 17.58 0.00 4.10
6985 9467 9.338622 ACTAGAATATTTATACCCTGTTGCAAC 57.661 33.333 22.83 22.83 0.00 4.17
6987 9469 9.991906 GTACTAGAATATTTATACCCTGTTGCA 57.008 33.333 0.00 0.00 0.00 4.08
6988 9470 9.136952 CGTACTAGAATATTTATACCCTGTTGC 57.863 37.037 0.00 0.00 0.00 4.17
7006 9488 9.570468 AGGTGAATCATAATCTAACGTACTAGA 57.430 33.333 0.00 0.00 32.53 2.43
7007 9489 9.613957 CAGGTGAATCATAATCTAACGTACTAG 57.386 37.037 0.00 0.00 0.00 2.57
7008 9490 9.128404 ACAGGTGAATCATAATCTAACGTACTA 57.872 33.333 0.00 0.00 0.00 1.82
7009 9491 8.008513 ACAGGTGAATCATAATCTAACGTACT 57.991 34.615 0.00 0.00 0.00 2.73
7010 9492 7.919091 TGACAGGTGAATCATAATCTAACGTAC 59.081 37.037 0.00 0.00 0.00 3.67
7011 9493 8.002984 TGACAGGTGAATCATAATCTAACGTA 57.997 34.615 0.00 0.00 0.00 3.57
7012 9494 6.873997 TGACAGGTGAATCATAATCTAACGT 58.126 36.000 0.00 0.00 0.00 3.99
7013 9495 7.770801 TTGACAGGTGAATCATAATCTAACG 57.229 36.000 0.00 0.00 0.00 3.18
7021 9503 8.720562 CGCATTATTATTGACAGGTGAATCATA 58.279 33.333 0.00 0.00 0.00 2.15
7022 9504 7.445096 TCGCATTATTATTGACAGGTGAATCAT 59.555 33.333 0.00 0.00 0.00 2.45
7023 9505 6.765512 TCGCATTATTATTGACAGGTGAATCA 59.234 34.615 0.00 0.00 0.00 2.57
7024 9506 7.189693 TCGCATTATTATTGACAGGTGAATC 57.810 36.000 0.00 0.00 0.00 2.52
7025 9507 7.750229 ATCGCATTATTATTGACAGGTGAAT 57.250 32.000 0.00 0.00 0.00 2.57
7026 9508 7.066887 ACAATCGCATTATTATTGACAGGTGAA 59.933 33.333 0.00 0.00 35.18 3.18
7027 9509 6.542005 ACAATCGCATTATTATTGACAGGTGA 59.458 34.615 0.00 0.00 35.18 4.02
7028 9510 6.634035 CACAATCGCATTATTATTGACAGGTG 59.366 38.462 0.00 0.00 35.18 4.00
7029 9511 6.318648 ACACAATCGCATTATTATTGACAGGT 59.681 34.615 0.00 0.00 35.18 4.00
7030 9512 6.728200 ACACAATCGCATTATTATTGACAGG 58.272 36.000 0.00 0.00 35.18 4.00
7031 9513 9.715123 TTTACACAATCGCATTATTATTGACAG 57.285 29.630 0.00 0.00 35.18 3.51
7059 9541 8.859090 TCCACAGTCAGAATTTGATAAACATTT 58.141 29.630 0.00 0.00 38.29 2.32
7060 9542 8.408043 TCCACAGTCAGAATTTGATAAACATT 57.592 30.769 0.00 0.00 38.29 2.71
7061 9543 8.585471 ATCCACAGTCAGAATTTGATAAACAT 57.415 30.769 0.00 0.00 38.29 2.71
7062 9544 8.408043 AATCCACAGTCAGAATTTGATAAACA 57.592 30.769 0.00 0.00 38.29 2.83
7063 9545 9.774742 GTAATCCACAGTCAGAATTTGATAAAC 57.225 33.333 0.00 0.00 38.29 2.01
7064 9546 8.956426 GGTAATCCACAGTCAGAATTTGATAAA 58.044 33.333 0.00 0.00 38.29 1.40
7065 9547 8.328758 AGGTAATCCACAGTCAGAATTTGATAA 58.671 33.333 0.00 0.00 35.57 1.75
7066 9548 7.861629 AGGTAATCCACAGTCAGAATTTGATA 58.138 34.615 0.00 0.00 35.57 2.15
7067 9549 6.725364 AGGTAATCCACAGTCAGAATTTGAT 58.275 36.000 0.00 0.00 35.57 2.57
7068 9550 6.126863 AGGTAATCCACAGTCAGAATTTGA 57.873 37.500 0.00 0.00 35.89 2.69
7069 9551 6.824305 AAGGTAATCCACAGTCAGAATTTG 57.176 37.500 0.00 0.00 35.89 2.32
7070 9552 8.109634 ACATAAGGTAATCCACAGTCAGAATTT 58.890 33.333 0.00 0.00 35.89 1.82
7071 9553 7.633789 ACATAAGGTAATCCACAGTCAGAATT 58.366 34.615 0.00 0.00 35.89 2.17
7072 9554 7.200434 ACATAAGGTAATCCACAGTCAGAAT 57.800 36.000 0.00 0.00 35.89 2.40
7073 9555 6.620877 ACATAAGGTAATCCACAGTCAGAA 57.379 37.500 0.00 0.00 35.89 3.02
7074 9556 6.620877 AACATAAGGTAATCCACAGTCAGA 57.379 37.500 0.00 0.00 35.89 3.27
7075 9557 7.390440 TCAAAACATAAGGTAATCCACAGTCAG 59.610 37.037 0.00 0.00 35.89 3.51
7076 9558 7.227873 TCAAAACATAAGGTAATCCACAGTCA 58.772 34.615 0.00 0.00 35.89 3.41
7077 9559 7.681939 TCAAAACATAAGGTAATCCACAGTC 57.318 36.000 0.00 0.00 35.89 3.51
7078 9560 8.650143 AATCAAAACATAAGGTAATCCACAGT 57.350 30.769 0.00 0.00 35.89 3.55
7080 9562 9.967451 TCTAATCAAAACATAAGGTAATCCACA 57.033 29.630 0.00 0.00 35.89 4.17
7088 9570 9.143155 ACCAAACTTCTAATCAAAACATAAGGT 57.857 29.630 0.00 0.00 0.00 3.50
7163 9645 9.496873 CCAACCTTCCACGTATATGATAATTAA 57.503 33.333 0.00 0.00 0.00 1.40
7164 9646 8.872134 TCCAACCTTCCACGTATATGATAATTA 58.128 33.333 0.00 0.00 0.00 1.40
7165 9647 7.660208 GTCCAACCTTCCACGTATATGATAATT 59.340 37.037 0.00 0.00 0.00 1.40
7166 9648 7.159372 GTCCAACCTTCCACGTATATGATAAT 58.841 38.462 0.00 0.00 0.00 1.28
7167 9649 6.518493 GTCCAACCTTCCACGTATATGATAA 58.482 40.000 0.00 0.00 0.00 1.75
7168 9650 5.278610 CGTCCAACCTTCCACGTATATGATA 60.279 44.000 0.00 0.00 0.00 2.15
7169 9651 4.500887 CGTCCAACCTTCCACGTATATGAT 60.501 45.833 0.00 0.00 0.00 2.45
7170 9652 3.181484 CGTCCAACCTTCCACGTATATGA 60.181 47.826 0.00 0.00 0.00 2.15
7171 9653 3.120792 CGTCCAACCTTCCACGTATATG 58.879 50.000 0.00 0.00 0.00 1.78
7172 9654 3.025978 TCGTCCAACCTTCCACGTATAT 58.974 45.455 0.00 0.00 33.89 0.86
7173 9655 2.445427 TCGTCCAACCTTCCACGTATA 58.555 47.619 0.00 0.00 33.89 1.47
7174 9656 1.259609 TCGTCCAACCTTCCACGTAT 58.740 50.000 0.00 0.00 33.89 3.06
7175 9657 1.000060 CTTCGTCCAACCTTCCACGTA 60.000 52.381 0.00 0.00 33.89 3.57
7176 9658 0.249741 CTTCGTCCAACCTTCCACGT 60.250 55.000 0.00 0.00 33.89 4.49
7177 9659 2.528797 CTTCGTCCAACCTTCCACG 58.471 57.895 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.