Multiple sequence alignment - TraesCS7D01G374300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G374300 chr7D 100.000 4912 0 0 565 5476 484719266 484724177 0.000000e+00 9071.0
1 TraesCS7D01G374300 chr7D 100.000 306 0 0 1 306 484718702 484719007 2.860000e-157 566.0
2 TraesCS7D01G374300 chr7B 94.464 2619 96 20 921 3517 511619140 511621731 0.000000e+00 3988.0
3 TraesCS7D01G374300 chr7B 96.434 1935 51 9 1901 3831 511922999 511924919 0.000000e+00 3175.0
4 TraesCS7D01G374300 chr7B 89.820 1503 76 34 565 2054 511782060 511783498 0.000000e+00 1857.0
5 TraesCS7D01G374300 chr7B 89.687 1503 79 33 565 2054 511815682 511817121 0.000000e+00 1847.0
6 TraesCS7D01G374300 chr7B 92.399 1092 31 22 3910 4962 511925044 511926122 0.000000e+00 1509.0
7 TraesCS7D01G374300 chr7B 89.975 1207 65 27 565 1758 511856547 511857710 0.000000e+00 1507.0
8 TraesCS7D01G374300 chr7B 92.125 1092 34 22 3910 4962 511858331 511859409 0.000000e+00 1493.0
9 TraesCS7D01G374300 chr7B 91.109 1091 42 23 3910 4962 511622987 511624060 0.000000e+00 1426.0
10 TraesCS7D01G374300 chr7B 88.386 663 30 9 4810 5454 511926847 511927480 0.000000e+00 754.0
11 TraesCS7D01G374300 chr7B 96.450 338 11 1 565 902 511618821 511619157 1.720000e-154 556.0
12 TraesCS7D01G374300 chr7B 98.366 306 4 1 1 306 511618438 511618742 2.240000e-148 536.0
13 TraesCS7D01G374300 chr7B 96.405 306 10 1 1 306 511856164 511856468 2.280000e-138 503.0
14 TraesCS7D01G374300 chr7B 92.098 367 10 4 3499 3857 511622312 511622667 2.950000e-137 499.0
15 TraesCS7D01G374300 chr7B 96.078 306 11 1 1 306 511781677 511781981 1.060000e-136 497.0
16 TraesCS7D01G374300 chr7B 96.358 302 9 2 6 306 511922510 511922810 3.810000e-136 496.0
17 TraesCS7D01G374300 chr7B 95.425 306 13 1 1 306 511815299 511815603 2.290000e-133 486.0
18 TraesCS7D01G374300 chr7B 90.881 329 11 6 3521 3841 511857700 511858017 1.820000e-114 424.0
19 TraesCS7D01G374300 chr7B 95.276 127 5 1 565 691 511618404 511618529 3.350000e-47 200.0
20 TraesCS7D01G374300 chr7B 98.684 76 1 0 4965 5040 511624036 511624111 9.570000e-28 135.0
21 TraesCS7D01G374300 chr7B 97.368 76 2 0 4965 5040 511926098 511926173 4.450000e-26 130.0
22 TraesCS7D01G374300 chr7B 96.053 76 3 0 4965 5040 511859385 511859460 2.070000e-24 124.0
23 TraesCS7D01G374300 chr7A 90.106 2264 114 19 640 2864 552975263 552977455 0.000000e+00 2839.0
24 TraesCS7D01G374300 chr7A 90.063 946 30 16 4056 4962 553033643 553034563 0.000000e+00 1168.0
25 TraesCS7D01G374300 chr7A 97.072 444 13 0 2860 3303 552977752 552978195 0.000000e+00 749.0
26 TraesCS7D01G374300 chr7A 97.977 346 6 1 3424 3769 552987201 552987545 2.820000e-167 599.0
27 TraesCS7D01G374300 chr7A 95.395 304 12 2 1 304 552974521 552974822 2.970000e-132 483.0
28 TraesCS7D01G374300 chr7A 91.597 119 6 3 3910 4028 552991114 552991228 1.580000e-35 161.0
29 TraesCS7D01G374300 chr7A 97.802 91 2 0 3336 3426 552978194 552978284 2.040000e-34 158.0
30 TraesCS7D01G374300 chr1A 91.014 1736 88 29 565 2285 24135599 24137281 0.000000e+00 2279.0
31 TraesCS7D01G374300 chr1A 92.547 1543 66 18 2340 3863 24137274 24138786 0.000000e+00 2167.0
32 TraesCS7D01G374300 chr1A 88.396 1060 90 19 2777 3817 477659246 477658201 0.000000e+00 1245.0
33 TraesCS7D01G374300 chr1A 90.160 935 68 16 1843 2767 477660592 477659672 0.000000e+00 1195.0
34 TraesCS7D01G374300 chr1A 89.508 610 48 13 3911 4517 477656206 477655610 0.000000e+00 758.0
35 TraesCS7D01G374300 chr1A 91.340 485 29 10 4019 4498 24139032 24139508 0.000000e+00 651.0
36 TraesCS7D01G374300 chr1A 88.998 409 30 6 944 1351 477664371 477663977 4.930000e-135 492.0
37 TraesCS7D01G374300 chr1A 93.443 305 14 3 1 304 24135219 24135518 1.080000e-121 448.0
38 TraesCS7D01G374300 chr1A 85.841 452 26 13 4537 4962 477655520 477655081 3.890000e-121 446.0
39 TraesCS7D01G374300 chr1A 88.312 231 18 6 4682 4903 24139509 24139739 9.040000e-68 268.0
40 TraesCS7D01G374300 chr1A 90.643 171 8 2 565 728 477664534 477664365 2.570000e-53 220.0
41 TraesCS7D01G374300 chr1A 94.667 75 4 0 4888 4962 24139923 24139997 3.470000e-22 117.0
42 TraesCS7D01G374300 chr1A 97.222 36 0 1 3931 3965 24138975 24139010 5.920000e-05 60.2
43 TraesCS7D01G374300 chr1B 93.234 1537 76 14 2340 3863 39382191 39383712 0.000000e+00 2237.0
44 TraesCS7D01G374300 chr1B 90.018 1122 73 13 565 1678 39380423 39381513 0.000000e+00 1415.0
45 TraesCS7D01G374300 chr1B 87.054 1120 101 21 2777 3866 503877114 503876009 0.000000e+00 1225.0
46 TraesCS7D01G374300 chr1B 89.350 939 71 17 1843 2767 503878475 503877552 0.000000e+00 1153.0
47 TraesCS7D01G374300 chr1B 93.432 609 29 6 1680 2285 39381598 39382198 0.000000e+00 893.0
48 TraesCS7D01G374300 chr1B 91.595 583 35 6 3931 4510 39383902 39384473 0.000000e+00 793.0
49 TraesCS7D01G374300 chr1B 90.328 610 42 14 3911 4517 503873053 503872458 0.000000e+00 784.0
50 TraesCS7D01G374300 chr1B 90.101 495 30 10 944 1432 503878957 503878476 4.660000e-175 625.0
51 TraesCS7D01G374300 chr1B 86.696 451 23 14 4537 4962 503872369 503871931 2.990000e-127 466.0
52 TraesCS7D01G374300 chr1B 94.098 305 12 3 1 304 39380048 39380347 5.000000e-125 459.0
53 TraesCS7D01G374300 chr1B 81.535 417 26 10 4553 4962 39384548 39384920 4.150000e-76 296.0
54 TraesCS7D01G374300 chr1B 89.542 153 8 4 584 728 503879103 503878951 2.600000e-43 187.0
55 TraesCS7D01G374300 chr1B 89.262 149 12 4 734 882 390621187 390621043 3.370000e-42 183.0
56 TraesCS7D01G374300 chr1D 93.303 1523 67 15 2363 3863 22958525 22960034 0.000000e+00 2215.0
57 TraesCS7D01G374300 chr1D 88.078 1124 89 20 2777 3866 377018657 377017545 0.000000e+00 1291.0
58 TraesCS7D01G374300 chr1D 90.150 934 70 15 1843 2767 377020015 377019095 0.000000e+00 1195.0
59 TraesCS7D01G374300 chr1D 92.779 734 34 7 946 1678 22956921 22957636 0.000000e+00 1044.0
60 TraesCS7D01G374300 chr1D 94.581 609 26 4 1680 2285 22957721 22958325 0.000000e+00 935.0
61 TraesCS7D01G374300 chr1D 89.773 616 38 11 3910 4517 22960492 22961090 0.000000e+00 765.0
62 TraesCS7D01G374300 chr1D 89.508 610 47 14 3911 4517 377017376 377016781 0.000000e+00 756.0
63 TraesCS7D01G374300 chr1D 89.120 432 24 9 4553 4962 22961179 22961609 2.920000e-142 516.0
64 TraesCS7D01G374300 chr1D 87.723 448 22 12 4537 4964 377016689 377016255 4.930000e-135 492.0
65 TraesCS7D01G374300 chr1D 91.385 325 12 4 565 882 22956603 22956918 1.090000e-116 431.0
66 TraesCS7D01G374300 chr1D 90.643 171 8 2 565 728 377020660 377020491 2.570000e-53 220.0
67 TraesCS7D01G374300 chr1D 94.030 67 4 0 4965 5031 22961585 22961651 9.700000e-18 102.0
68 TraesCS7D01G374300 chr1D 93.333 45 3 0 2340 2384 22958318 22958362 3.540000e-07 67.6
69 TraesCS7D01G374300 chrUn 96.622 296 9 1 11 306 478969314 478969020 1.770000e-134 490.0
70 TraesCS7D01G374300 chr4B 88.525 183 14 4 768 945 324920052 324920232 1.190000e-51 215.0
71 TraesCS7D01G374300 chr2D 87.356 174 22 0 772 945 410410364 410410191 3.350000e-47 200.0
72 TraesCS7D01G374300 chr2D 90.066 151 9 4 732 882 331607278 331607134 2.010000e-44 191.0
73 TraesCS7D01G374300 chr2A 92.908 141 4 1 742 882 4955279 4955145 3.350000e-47 200.0
74 TraesCS7D01G374300 chr2B 92.199 141 5 1 742 882 3401057 3401191 1.560000e-45 195.0
75 TraesCS7D01G374300 chr2B 83.902 205 23 3 732 936 484931977 484931783 2.600000e-43 187.0
76 TraesCS7D01G374300 chr4D 88.462 156 8 3 732 886 85006950 85007096 4.360000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G374300 chr7D 484718702 484724177 5475 False 4818.500000 9071 100.000000 1 5476 2 chr7D.!!$F1 5475
1 TraesCS7D01G374300 chr7B 511922510 511927480 4970 False 1212.800000 3175 94.189000 6 5454 5 chr7B.!!$F5 5448
2 TraesCS7D01G374300 chr7B 511781677 511783498 1821 False 1177.000000 1857 92.949000 1 2054 2 chr7B.!!$F2 2053
3 TraesCS7D01G374300 chr7B 511815299 511817121 1822 False 1166.500000 1847 92.556000 1 2054 2 chr7B.!!$F3 2053
4 TraesCS7D01G374300 chr7B 511618404 511624111 5707 False 1048.571429 3988 95.206714 1 5040 7 chr7B.!!$F1 5039
5 TraesCS7D01G374300 chr7B 511856164 511859460 3296 False 810.200000 1507 93.087800 1 5040 5 chr7B.!!$F4 5039
6 TraesCS7D01G374300 chr7A 553033643 553034563 920 False 1168.000000 1168 90.063000 4056 4962 1 chr7A.!!$F1 906
7 TraesCS7D01G374300 chr7A 552974521 552978284 3763 False 1057.250000 2839 95.093750 1 3426 4 chr7A.!!$F2 3425
8 TraesCS7D01G374300 chr7A 552987201 552991228 4027 False 380.000000 599 94.787000 3424 4028 2 chr7A.!!$F3 604
9 TraesCS7D01G374300 chr1A 24135219 24139997 4778 False 855.742857 2279 92.649286 1 4962 7 chr1A.!!$F1 4961
10 TraesCS7D01G374300 chr1A 477655081 477664534 9453 True 726.000000 1245 88.924333 565 4962 6 chr1A.!!$R1 4397
11 TraesCS7D01G374300 chr1B 39380048 39384920 4872 False 1015.500000 2237 90.652000 1 4962 6 chr1B.!!$F1 4961
12 TraesCS7D01G374300 chr1B 503871931 503879103 7172 True 740.000000 1225 88.845167 584 4962 6 chr1B.!!$R2 4378
13 TraesCS7D01G374300 chr1D 377016255 377020660 4405 True 790.800000 1291 89.220400 565 4964 5 chr1D.!!$R1 4399
14 TraesCS7D01G374300 chr1D 22956603 22961651 5048 False 759.450000 2215 92.288000 565 5031 8 chr1D.!!$F1 4466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 1603 1.408127 CCATGAGTTGGTTGCGGGATA 60.408 52.381 0.00 0.00 40.99 2.59 F
1358 5436 0.391597 ACACCCCTCGTTGTGTAGTG 59.608 55.000 0.00 0.00 43.54 2.74 F
2729 7119 1.770749 TTGTGACCCCTTGTACCGGG 61.771 60.000 6.32 9.79 45.70 5.73 F
3908 11680 1.002087 ACAGGGATGACTTGAACGTCC 59.998 52.381 0.00 0.00 41.24 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 5948 0.603975 ACCGAAGCAAGCCTCTTCAC 60.604 55.0 9.79 0.00 39.80 3.18 R
2774 7593 1.500474 CAGATGTCCTCCCAAGCCTA 58.500 55.0 0.00 0.00 0.00 3.93 R
4262 18403 0.463620 GGTGACAAGCTTTTGGCCAA 59.536 50.0 16.05 16.05 43.05 4.52 R
4984 19473 0.179032 TGAGCCGTTTCAAGCCTTCA 60.179 50.0 0.00 0.00 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 107 7.360776 GCCAGAAACAAAAGAAATTGTCACAAA 60.361 33.333 0.00 0.00 42.49 2.83
269 304 6.662234 ACTGTGAACCTGATGAATCATGAATT 59.338 34.615 0.00 0.00 36.02 2.17
288 323 3.526931 TTGAGTAGCCATGCTGTAGAC 57.473 47.619 0.00 0.00 40.10 2.59
645 1392 2.346803 CAAACACAGGTCCAGGATACG 58.653 52.381 0.00 0.00 46.39 3.06
763 1517 5.779241 AAGGACTGGAATATCACCAAAGA 57.221 39.130 3.72 0.00 36.95 2.52
764 1518 5.779241 AGGACTGGAATATCACCAAAGAA 57.221 39.130 3.72 0.00 36.95 2.52
765 1519 5.501156 AGGACTGGAATATCACCAAAGAAC 58.499 41.667 3.72 0.00 36.95 3.01
766 1520 5.251700 AGGACTGGAATATCACCAAAGAACT 59.748 40.000 3.72 0.00 36.95 3.01
767 1521 6.443849 AGGACTGGAATATCACCAAAGAACTA 59.556 38.462 3.72 0.00 36.95 2.24
768 1522 6.763610 GGACTGGAATATCACCAAAGAACTAG 59.236 42.308 3.72 0.00 36.95 2.57
769 1523 6.653989 ACTGGAATATCACCAAAGAACTAGG 58.346 40.000 0.00 0.00 36.95 3.02
770 1524 5.437060 TGGAATATCACCAAAGAACTAGGC 58.563 41.667 0.00 0.00 34.25 3.93
841 1603 1.408127 CCATGAGTTGGTTGCGGGATA 60.408 52.381 0.00 0.00 40.99 2.59
1190 1967 9.143155 ACCCTACATGTTTTGAACTTTAAATCT 57.857 29.630 2.30 0.00 0.00 2.40
1191 1968 9.981114 CCCTACATGTTTTGAACTTTAAATCTT 57.019 29.630 2.30 0.00 0.00 2.40
1317 2097 7.882791 TGCATAGTTAACTCTTGAAATCCTCAA 59.117 33.333 12.39 0.00 41.93 3.02
1335 5413 6.684686 TCCTCAATGCATTTTTCTTCTCTTG 58.315 36.000 9.83 0.00 0.00 3.02
1340 5418 4.362279 TGCATTTTTCTTCTCTTGTGCAC 58.638 39.130 10.75 10.75 36.54 4.57
1341 5419 4.142204 TGCATTTTTCTTCTCTTGTGCACA 60.142 37.500 17.42 17.42 36.54 4.57
1358 5436 0.391597 ACACCCCTCGTTGTGTAGTG 59.608 55.000 0.00 0.00 43.54 2.74
1414 5506 7.217200 TGGTAATAAGTATGCTTCATCCACTC 58.783 38.462 0.00 0.00 36.22 3.51
1454 5546 6.226787 AGCACTATACTATCAAATGGACAGC 58.773 40.000 0.00 0.00 0.00 4.40
1472 5564 6.142817 GGACAGCGCATTTCGAATATAATTT 58.857 36.000 11.47 0.00 41.67 1.82
1551 5648 7.753659 TCAATGCCAATTTTCATGCATAAAAG 58.246 30.769 0.00 0.00 43.23 2.27
1603 5700 9.062367 ACATATTGGCCATAATAGATAGGTCTT 57.938 33.333 6.09 0.00 35.87 3.01
1734 5914 7.011016 CACACTGTTGTTGACTTCTTGTGTATA 59.989 37.037 0.00 0.00 34.88 1.47
1767 5948 5.413499 CCATGGGAGCTGTTTAATTTTCAG 58.587 41.667 2.85 0.00 0.00 3.02
1922 6103 2.280797 CTGTGGGTGTGACCGTGG 60.281 66.667 0.00 0.00 39.83 4.94
1990 6171 5.582269 TGCATCATCTTCTTCGTTTTCTAGG 59.418 40.000 0.00 0.00 0.00 3.02
2008 6189 3.652057 AGGTGTGGTTCCATATTCAGG 57.348 47.619 0.00 0.00 0.00 3.86
2009 6190 2.919602 AGGTGTGGTTCCATATTCAGGT 59.080 45.455 0.00 0.00 0.00 4.00
2010 6191 3.333680 AGGTGTGGTTCCATATTCAGGTT 59.666 43.478 0.00 0.00 0.00 3.50
2011 6192 4.086457 GGTGTGGTTCCATATTCAGGTTT 58.914 43.478 0.00 0.00 0.00 3.27
2426 6803 3.638160 TGAAAGCTTGCCTCATCAGTTTT 59.362 39.130 0.00 0.00 0.00 2.43
2530 6907 2.823984 CTGCTAGAGATGCCAACTCAG 58.176 52.381 4.71 1.74 36.91 3.35
2635 7017 9.511144 GTACCCATTTTCTATGTTTATTTTCCG 57.489 33.333 0.00 0.00 0.00 4.30
2655 7038 6.067263 TCCGTACTGAATTTGTTCCTTTTG 57.933 37.500 0.00 0.00 0.00 2.44
2729 7119 1.770749 TTGTGACCCCTTGTACCGGG 61.771 60.000 6.32 9.79 45.70 5.73
2780 7599 1.065418 ACTAGTGGCGCATTTAGGCTT 60.065 47.619 10.83 0.00 35.01 4.35
2852 7682 6.883744 ACAGTTTATGACAATTTTGGTGGTT 58.116 32.000 0.00 0.00 0.00 3.67
3001 8139 9.100554 CTCCATATATTTGCAGCAAAAATTCAA 57.899 29.630 24.15 7.73 36.90 2.69
3282 8421 9.618890 ATTTATAGTTTCTTGCATAGCTCTCAA 57.381 29.630 0.00 0.00 0.00 3.02
3547 9304 4.640771 TTGTTCAGAATAGGGTTCAGCT 57.359 40.909 0.00 0.00 0.00 4.24
3548 9305 3.942829 TGTTCAGAATAGGGTTCAGCTG 58.057 45.455 7.63 7.63 0.00 4.24
3549 9306 3.582647 TGTTCAGAATAGGGTTCAGCTGA 59.417 43.478 13.74 13.74 0.00 4.26
3550 9307 3.895232 TCAGAATAGGGTTCAGCTGAC 57.105 47.619 18.03 11.66 0.00 3.51
3551 9308 3.173151 TCAGAATAGGGTTCAGCTGACA 58.827 45.455 18.03 5.15 0.00 3.58
3552 9309 3.196469 TCAGAATAGGGTTCAGCTGACAG 59.804 47.826 18.03 0.00 0.00 3.51
3553 9310 2.503356 AGAATAGGGTTCAGCTGACAGG 59.497 50.000 18.03 0.00 0.00 4.00
3689 9462 4.777896 ACTTCTGCTCAGGTATAAACAGGA 59.222 41.667 0.00 0.00 0.00 3.86
3864 11504 7.876896 TTTTTGTCCCAATTAATAAAGACGC 57.123 32.000 0.00 0.00 0.00 5.19
3865 11505 6.576662 TTTGTCCCAATTAATAAAGACGCA 57.423 33.333 0.00 0.00 0.00 5.24
3866 11506 5.554822 TGTCCCAATTAATAAAGACGCAC 57.445 39.130 0.00 0.00 0.00 5.34
3867 11507 4.093703 TGTCCCAATTAATAAAGACGCACG 59.906 41.667 0.00 0.00 0.00 5.34
3869 11509 3.242936 CCCAATTAATAAAGACGCACGGG 60.243 47.826 0.00 0.00 0.00 5.28
3877 11547 2.482296 AAGACGCACGGGGTTAGTCG 62.482 60.000 0.00 0.00 36.97 4.18
3904 11676 4.918810 AAAACACAGGGATGACTTGAAC 57.081 40.909 0.00 0.00 0.00 3.18
3905 11677 2.169832 ACACAGGGATGACTTGAACG 57.830 50.000 0.00 0.00 0.00 3.95
3907 11679 2.069273 CACAGGGATGACTTGAACGTC 58.931 52.381 0.00 0.00 34.52 4.34
3908 11680 1.002087 ACAGGGATGACTTGAACGTCC 59.998 52.381 0.00 0.00 41.24 4.79
3924 18054 6.578944 TGAACGTCCTAACATTGTGCTATAT 58.421 36.000 0.00 0.00 0.00 0.86
3925 18055 7.718525 TGAACGTCCTAACATTGTGCTATATA 58.281 34.615 0.00 0.00 0.00 0.86
3926 18056 8.364894 TGAACGTCCTAACATTGTGCTATATAT 58.635 33.333 0.00 0.00 0.00 0.86
3927 18057 9.850628 GAACGTCCTAACATTGTGCTATATATA 57.149 33.333 0.00 0.00 0.00 0.86
3929 18059 9.856488 ACGTCCTAACATTGTGCTATATATAAG 57.144 33.333 0.00 0.00 0.00 1.73
3966 18096 4.301072 TGTTAGGCTGGCTTTTGTAGAT 57.699 40.909 9.68 0.00 0.00 1.98
4014 18146 5.335504 GCTAGTTTGAATTTCTCTGCAGCTT 60.336 40.000 9.47 0.00 0.00 3.74
4016 18148 5.527033 AGTTTGAATTTCTCTGCAGCTTTC 58.473 37.500 9.47 7.75 0.00 2.62
4017 18149 4.510038 TTGAATTTCTCTGCAGCTTTCC 57.490 40.909 9.47 0.00 0.00 3.13
4023 18155 1.202582 TCTCTGCAGCTTTCCGTAGAC 59.797 52.381 9.47 0.00 0.00 2.59
4032 18164 4.150804 CAGCTTTCCGTAGACTTCTTGTTC 59.849 45.833 0.00 0.00 0.00 3.18
4109 18250 9.754382 ATGTGAGTTAAAAGAAACGTAGTAAGA 57.246 29.630 0.00 0.00 45.00 2.10
4125 18266 6.841286 CGTAGTAAGATCAATTGTCGATTTGC 59.159 38.462 5.13 0.00 0.00 3.68
4163 18304 2.034104 TGCAGCTTGATCCTGATGAC 57.966 50.000 4.78 0.00 32.03 3.06
4217 18358 2.695147 GCTTAACATGGGGAATGGAAGG 59.305 50.000 0.00 0.00 40.94 3.46
4262 18403 0.174162 GCAGAAAAATGCGGCCTCAT 59.826 50.000 1.26 1.26 36.28 2.90
4400 18547 8.089625 TGGTCTTTTATCATCAGGACTATGAA 57.910 34.615 0.00 0.00 36.95 2.57
4510 18658 5.106157 CCTCTTTGGTTACACTAATGCCTTG 60.106 44.000 0.00 0.00 0.00 3.61
4529 18718 1.885388 TGACGACTGGCCGTGTTTG 60.885 57.895 4.94 3.26 43.49 2.93
4617 18875 6.188407 AGATATTGGCTATAGCTCCGTTCTA 58.812 40.000 23.53 4.07 41.70 2.10
4652 18910 2.369394 AGGATTTCGGAATGCCACTTC 58.631 47.619 4.03 0.00 34.44 3.01
4730 18995 1.761198 AGTAACTCCGTAATCTGCCCC 59.239 52.381 0.00 0.00 0.00 5.80
4776 19044 3.881688 AGAAAGAGGCATGCATGTCATAC 59.118 43.478 31.47 21.14 34.11 2.39
4822 19090 3.617669 CAATGGCGCCTAAAGAATTACG 58.382 45.455 29.70 3.02 0.00 3.18
4868 19146 9.007901 CAATTCCAAATATCTGATACTTCTCCC 57.992 37.037 0.00 0.00 0.00 4.30
4962 19451 2.517959 TGCAGGGAAATCAGTTGAAGG 58.482 47.619 0.00 0.00 0.00 3.46
4963 19452 1.203287 GCAGGGAAATCAGTTGAAGGC 59.797 52.381 0.00 0.00 0.00 4.35
4964 19453 1.470098 CAGGGAAATCAGTTGAAGGCG 59.530 52.381 0.00 0.00 0.00 5.52
4965 19454 0.811281 GGGAAATCAGTTGAAGGCGG 59.189 55.000 0.00 0.00 0.00 6.13
4966 19455 1.534729 GGAAATCAGTTGAAGGCGGT 58.465 50.000 0.00 0.00 0.00 5.68
4967 19456 1.200020 GGAAATCAGTTGAAGGCGGTG 59.800 52.381 0.00 0.00 0.00 4.94
4968 19457 1.880027 GAAATCAGTTGAAGGCGGTGT 59.120 47.619 0.00 0.00 0.00 4.16
4969 19458 1.981256 AATCAGTTGAAGGCGGTGTT 58.019 45.000 0.00 0.00 0.00 3.32
4970 19459 1.238439 ATCAGTTGAAGGCGGTGTTG 58.762 50.000 0.00 0.00 0.00 3.33
4971 19460 1.008538 CAGTTGAAGGCGGTGTTGC 60.009 57.895 0.00 0.00 0.00 4.17
4972 19461 1.453015 AGTTGAAGGCGGTGTTGCA 60.453 52.632 0.00 0.00 36.28 4.08
4973 19462 1.008538 GTTGAAGGCGGTGTTGCAG 60.009 57.895 0.00 0.00 36.28 4.41
4974 19463 2.192861 TTGAAGGCGGTGTTGCAGG 61.193 57.895 0.00 0.00 36.28 4.85
4975 19464 3.365265 GAAGGCGGTGTTGCAGGG 61.365 66.667 0.00 0.00 36.28 4.45
4976 19465 3.842925 GAAGGCGGTGTTGCAGGGA 62.843 63.158 0.00 0.00 36.28 4.20
4977 19466 3.429372 AAGGCGGTGTTGCAGGGAA 62.429 57.895 0.00 0.00 36.28 3.97
4978 19467 2.909965 GGCGGTGTTGCAGGGAAA 60.910 61.111 0.00 0.00 36.28 3.13
4979 19468 2.275380 GGCGGTGTTGCAGGGAAAT 61.275 57.895 0.00 0.00 36.28 2.17
4980 19469 1.212751 GCGGTGTTGCAGGGAAATC 59.787 57.895 0.00 0.00 34.15 2.17
4981 19470 1.523154 GCGGTGTTGCAGGGAAATCA 61.523 55.000 0.00 0.00 34.15 2.57
4982 19471 0.523072 CGGTGTTGCAGGGAAATCAG 59.477 55.000 0.00 0.00 0.00 2.90
4983 19472 1.620822 GGTGTTGCAGGGAAATCAGT 58.379 50.000 0.00 0.00 0.00 3.41
4984 19473 1.963515 GGTGTTGCAGGGAAATCAGTT 59.036 47.619 0.00 0.00 0.00 3.16
4985 19474 2.288395 GGTGTTGCAGGGAAATCAGTTG 60.288 50.000 0.00 0.00 0.00 3.16
4986 19475 2.622942 GTGTTGCAGGGAAATCAGTTGA 59.377 45.455 0.00 0.00 0.00 3.18
4987 19476 3.068024 GTGTTGCAGGGAAATCAGTTGAA 59.932 43.478 0.00 0.00 0.00 2.69
4988 19477 3.318839 TGTTGCAGGGAAATCAGTTGAAG 59.681 43.478 0.00 0.00 0.00 3.02
4989 19478 2.517959 TGCAGGGAAATCAGTTGAAGG 58.482 47.619 0.00 0.00 0.00 3.46
5040 19529 2.982470 GCGCAAAGACTGATTTCCTTTG 59.018 45.455 0.30 0.00 45.59 2.77
5041 19530 3.550842 GCGCAAAGACTGATTTCCTTTGT 60.551 43.478 0.30 0.00 44.99 2.83
5043 19532 5.619981 GCGCAAAGACTGATTTCCTTTGTAT 60.620 40.000 0.30 0.00 44.99 2.29
5045 19534 7.679638 GCGCAAAGACTGATTTCCTTTGTATAT 60.680 37.037 0.30 0.00 44.99 0.86
5046 19535 8.826710 CGCAAAGACTGATTTCCTTTGTATATA 58.173 33.333 13.40 0.00 44.99 0.86
5062 20428 9.408069 CTTTGTATATAGTAGGAAGTAAAGCGG 57.592 37.037 0.00 0.00 0.00 5.52
5149 20515 0.254178 GCTGCTCTTGATCTTCCCCA 59.746 55.000 0.00 0.00 0.00 4.96
5158 20524 1.004891 ATCTTCCCCACCCCTCCTC 59.995 63.158 0.00 0.00 0.00 3.71
5163 20529 2.204151 CCCACCCCTCCTCCTGTT 60.204 66.667 0.00 0.00 0.00 3.16
5187 20553 3.270877 GGTTCATGCACTTGTACTAGGG 58.729 50.000 9.17 5.72 0.00 3.53
5205 20571 1.067635 GGGCATTGCAGTGACGAAATT 60.068 47.619 14.15 0.00 0.00 1.82
5209 20575 3.416277 CATTGCAGTGACGAAATTACCG 58.584 45.455 2.46 0.00 0.00 4.02
5212 20578 1.722011 CAGTGACGAAATTACCGGCT 58.278 50.000 0.00 0.00 35.76 5.52
5263 20630 3.877508 CAGATTCTGCTGAATGCTGATCA 59.122 43.478 21.90 0.00 46.40 2.92
5281 20648 7.640616 CTGATCAGCTGAAACTGTAGATATG 57.359 40.000 22.50 0.00 38.84 1.78
5286 20653 5.352293 CAGCTGAAACTGTAGATATGCACAA 59.648 40.000 8.42 0.00 32.78 3.33
5288 20655 6.430925 AGCTGAAACTGTAGATATGCACAAAA 59.569 34.615 0.00 0.00 0.00 2.44
5290 20657 6.611381 TGAAACTGTAGATATGCACAAAAGC 58.389 36.000 0.00 0.00 0.00 3.51
5310 20677 8.447833 CAAAAGCAAATCTGGAAGTAATACGTA 58.552 33.333 0.00 0.00 33.76 3.57
5322 20689 0.384669 AATACGTAGGAGCTGGACGC 59.615 55.000 10.63 0.00 40.19 5.19
5338 20705 3.129813 TGGACGCTGTTGTATTCTCGTAT 59.870 43.478 0.00 0.00 0.00 3.06
5340 20707 4.103357 GACGCTGTTGTATTCTCGTATGT 58.897 43.478 0.00 0.00 0.00 2.29
5342 20709 5.032863 ACGCTGTTGTATTCTCGTATGTAC 58.967 41.667 0.00 0.00 0.00 2.90
5375 20742 1.444895 GCTGCTGCCAAATTCACGG 60.445 57.895 3.85 0.00 0.00 4.94
5376 20743 1.213537 CTGCTGCCAAATTCACGGG 59.786 57.895 0.00 0.00 0.00 5.28
5442 20825 0.037326 GACGATGACAAGTCCAGCCA 60.037 55.000 0.00 0.00 0.00 4.75
5454 20837 0.106918 TCCAGCCAACAACGGTTCTT 60.107 50.000 0.00 0.00 34.21 2.52
5455 20838 0.310854 CCAGCCAACAACGGTTCTTC 59.689 55.000 0.00 0.00 34.21 2.87
5456 20839 0.310854 CAGCCAACAACGGTTCTTCC 59.689 55.000 0.00 0.00 34.21 3.46
5457 20840 0.822121 AGCCAACAACGGTTCTTCCC 60.822 55.000 0.00 0.00 34.21 3.97
5458 20841 1.802337 GCCAACAACGGTTCTTCCCC 61.802 60.000 0.00 0.00 34.21 4.81
5459 20842 0.179001 CCAACAACGGTTCTTCCCCT 60.179 55.000 0.00 0.00 34.21 4.79
5460 20843 1.235724 CAACAACGGTTCTTCCCCTC 58.764 55.000 0.00 0.00 34.21 4.30
5461 20844 1.137697 AACAACGGTTCTTCCCCTCT 58.862 50.000 0.00 0.00 29.00 3.69
5462 20845 0.396811 ACAACGGTTCTTCCCCTCTG 59.603 55.000 0.00 0.00 0.00 3.35
5463 20846 0.685097 CAACGGTTCTTCCCCTCTGA 59.315 55.000 0.00 0.00 0.00 3.27
5464 20847 1.279271 CAACGGTTCTTCCCCTCTGAT 59.721 52.381 0.00 0.00 0.00 2.90
5465 20848 2.500098 CAACGGTTCTTCCCCTCTGATA 59.500 50.000 0.00 0.00 0.00 2.15
5466 20849 2.389715 ACGGTTCTTCCCCTCTGATAG 58.610 52.381 0.00 0.00 0.00 2.08
5467 20850 2.024273 ACGGTTCTTCCCCTCTGATAGA 60.024 50.000 0.00 0.00 0.00 1.98
5468 20851 3.031736 CGGTTCTTCCCCTCTGATAGAA 58.968 50.000 0.00 0.00 0.00 2.10
5469 20852 3.451178 CGGTTCTTCCCCTCTGATAGAAA 59.549 47.826 0.00 0.00 0.00 2.52
5470 20853 4.081087 CGGTTCTTCCCCTCTGATAGAAAA 60.081 45.833 0.00 0.00 0.00 2.29
5471 20854 5.186942 GGTTCTTCCCCTCTGATAGAAAAC 58.813 45.833 0.00 0.00 0.00 2.43
5472 20855 5.280521 GGTTCTTCCCCTCTGATAGAAAACA 60.281 44.000 0.00 0.00 0.00 2.83
5473 20856 5.422214 TCTTCCCCTCTGATAGAAAACAC 57.578 43.478 0.00 0.00 0.00 3.32
5474 20857 5.094387 TCTTCCCCTCTGATAGAAAACACT 58.906 41.667 0.00 0.00 0.00 3.55
5475 20858 5.548056 TCTTCCCCTCTGATAGAAAACACTT 59.452 40.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 249 0.798776 CTACTTCCCAAAGTGCAGCG 59.201 55.000 1.17 0.00 45.37 5.18
269 304 1.757118 GGTCTACAGCATGGCTACTCA 59.243 52.381 0.00 0.00 43.62 3.41
581 616 2.158475 AGCCCAATGAGGACTTGTTTGA 60.158 45.455 0.00 0.00 41.22 2.69
645 1392 5.580297 TGTGACAATTTCTTTTGTTTCTGGC 59.420 36.000 0.00 0.00 39.85 4.85
769 1523 0.749454 CCCTGTCCATGGCTAGTTGC 60.749 60.000 6.96 0.00 41.94 4.17
770 1524 0.107017 CCCCTGTCCATGGCTAGTTG 60.107 60.000 6.96 1.45 0.00 3.16
841 1603 3.718956 AGGCTAGAGCTGAAACCCATAAT 59.281 43.478 0.00 0.00 41.70 1.28
941 1718 5.612351 ACAAAGAGGAGAGGTGTTTTCTAC 58.388 41.667 0.00 0.00 0.00 2.59
942 1719 5.888982 ACAAAGAGGAGAGGTGTTTTCTA 57.111 39.130 0.00 0.00 0.00 2.10
1212 1989 2.558359 CAAGACAGCCGAGGGAATTTTT 59.442 45.455 0.00 0.00 0.00 1.94
1213 1990 2.162681 CAAGACAGCCGAGGGAATTTT 58.837 47.619 0.00 0.00 0.00 1.82
1214 1991 1.073923 ACAAGACAGCCGAGGGAATTT 59.926 47.619 0.00 0.00 0.00 1.82
1215 1992 0.693049 ACAAGACAGCCGAGGGAATT 59.307 50.000 0.00 0.00 0.00 2.17
1216 1993 0.250513 GACAAGACAGCCGAGGGAAT 59.749 55.000 0.00 0.00 0.00 3.01
1317 2097 4.986659 GTGCACAAGAGAAGAAAAATGCAT 59.013 37.500 13.17 0.00 43.13 3.96
1335 5413 2.203153 ACAACGAGGGGTGTGCAC 60.203 61.111 10.75 10.75 0.00 4.57
1340 5418 0.320421 CCACTACACAACGAGGGGTG 60.320 60.000 0.00 0.00 40.78 4.61
1341 5419 0.761702 ACCACTACACAACGAGGGGT 60.762 55.000 0.00 0.00 45.03 4.95
1358 5436 7.875041 ACTATGATGAGATGTAGCATTACAACC 59.125 37.037 0.00 0.00 42.72 3.77
1414 5506 6.966534 ATAGTGCTATGAATTTGAAAGGGG 57.033 37.500 0.00 0.00 0.00 4.79
1449 5541 7.608974 AAAATTATATTCGAAATGCGCTGTC 57.391 32.000 9.73 1.88 40.61 3.51
1472 5564 4.511617 TGTGCTCGCATTCCAAAAATAA 57.488 36.364 0.00 0.00 0.00 1.40
1598 5695 7.539366 GCGATACATGATAGAGAGTTAAAGACC 59.461 40.741 0.00 0.00 0.00 3.85
1603 5700 6.894339 TGGCGATACATGATAGAGAGTTAA 57.106 37.500 0.00 0.00 0.00 2.01
1684 5864 1.975660 TGTTGTGGAACCTTGTAGCC 58.024 50.000 0.00 0.00 34.36 3.93
1734 5914 2.696707 CAGCTCCCATGGCATTAACAAT 59.303 45.455 6.09 0.00 0.00 2.71
1767 5948 0.603975 ACCGAAGCAAGCCTCTTCAC 60.604 55.000 9.79 0.00 39.80 3.18
1922 6103 2.360475 GAGGCAACAGCACCCTCC 60.360 66.667 0.00 0.00 39.36 4.30
1990 6171 4.522789 ACAAACCTGAATATGGAACCACAC 59.477 41.667 0.00 0.00 0.00 3.82
2011 6192 9.667107 CCATCAATAAGAGAAGGTACTAAAACA 57.333 33.333 0.00 0.00 38.49 2.83
2115 6299 7.560368 CCATTCTAGTTTACAGATCCAGACTT 58.440 38.462 0.00 0.00 0.00 3.01
2252 6439 4.095334 CCATGATTACCACCGCATATCATG 59.905 45.833 13.64 13.64 46.09 3.07
2426 6803 5.822519 GCTCCAATGGTCAATACATAGAACA 59.177 40.000 0.00 0.00 35.67 3.18
2530 6907 4.954875 ACTAGGAGCTTGATACATTCTGC 58.045 43.478 0.00 0.00 0.00 4.26
2635 7017 6.420903 GGAAGCAAAAGGAACAAATTCAGTAC 59.579 38.462 0.00 0.00 36.46 2.73
2655 7038 3.391506 ACAAATGCCAGAAAAGGAAGC 57.608 42.857 0.00 0.00 0.00 3.86
2774 7593 1.500474 CAGATGTCCTCCCAAGCCTA 58.500 55.000 0.00 0.00 0.00 3.93
2780 7599 2.105306 CACATATGCAGATGTCCTCCCA 59.895 50.000 23.56 0.00 37.99 4.37
2926 8064 9.988350 GCGTATCTTTTCTCAAATTTCTATGAA 57.012 29.630 0.00 0.00 0.00 2.57
3212 8351 5.125100 TGAAATGCTGGAAAGCTAAACAG 57.875 39.130 7.00 7.00 35.49 3.16
3547 9304 2.749280 CAGCATACTGTCACCTGTCA 57.251 50.000 0.00 0.00 39.22 3.58
3769 9542 9.743057 CCAAAACAAAAATATAGTTGTCTGACA 57.257 29.630 6.36 6.36 36.97 3.58
3863 11503 0.603439 TTTTCCGACTAACCCCGTGC 60.603 55.000 0.00 0.00 0.00 5.34
3864 11504 1.881591 TTTTTCCGACTAACCCCGTG 58.118 50.000 0.00 0.00 0.00 4.94
3900 11672 3.120321 AGCACAATGTTAGGACGTTCA 57.880 42.857 0.00 0.00 32.75 3.18
3903 11675 9.856488 CTTATATATAGCACAATGTTAGGACGT 57.144 33.333 0.00 0.00 0.00 4.34
3904 11676 9.856488 ACTTATATATAGCACAATGTTAGGACG 57.144 33.333 0.00 0.00 0.00 4.79
3996 18128 3.058016 CGGAAAGCTGCAGAGAAATTCAA 60.058 43.478 20.43 0.00 0.00 2.69
4014 18146 3.567164 ACTCGAACAAGAAGTCTACGGAA 59.433 43.478 0.00 0.00 0.00 4.30
4016 18148 3.235195 CACTCGAACAAGAAGTCTACGG 58.765 50.000 0.00 0.00 0.00 4.02
4017 18149 3.886549 ACACTCGAACAAGAAGTCTACG 58.113 45.455 0.00 0.00 0.00 3.51
4023 18155 3.302740 GCTGTGAACACTCGAACAAGAAG 60.303 47.826 6.51 0.00 0.00 2.85
4032 18164 2.724977 TAGGAAGCTGTGAACACTCG 57.275 50.000 6.51 0.00 0.00 4.18
4101 18241 7.011482 AGGCAAATCGACAATTGATCTTACTAC 59.989 37.037 13.59 0.00 0.00 2.73
4109 18250 4.022068 ACACAAGGCAAATCGACAATTGAT 60.022 37.500 13.59 0.00 0.00 2.57
4125 18266 2.159338 GCATTGCCTACATCACACAAGG 60.159 50.000 0.00 0.00 0.00 3.61
4163 18304 2.057316 CTGTCTGAGAACAAGACTGCG 58.943 52.381 5.29 0.00 34.03 5.18
4262 18403 0.463620 GGTGACAAGCTTTTGGCCAA 59.536 50.000 16.05 16.05 43.05 4.52
4400 18547 2.203153 AACCGTTCACTTGCGCCT 60.203 55.556 4.18 0.00 0.00 5.52
4510 18658 1.885850 AAACACGGCCAGTCGTCAC 60.886 57.895 2.24 0.00 41.86 3.67
4529 18718 7.118390 ACAGAAGTGTTCAACATATAAGTGCTC 59.882 37.037 0.00 0.00 30.30 4.26
4617 18875 7.493367 TCCGAAATCCTAACAAACACAAAATT 58.507 30.769 0.00 0.00 0.00 1.82
4652 18910 4.282068 GCATTGGCATTGATAACAGTACG 58.718 43.478 13.23 0.00 40.72 3.67
4776 19044 9.573133 TGCACGACAGTATATATTGATAATGAG 57.427 33.333 11.83 0.00 32.88 2.90
4822 19090 2.194271 GCATAGTTACGTCTGGCACTC 58.806 52.381 0.00 0.00 0.00 3.51
4868 19146 6.119240 TCATAGCTTCCCTGAATATTCCAG 57.881 41.667 12.90 9.75 0.00 3.86
4962 19451 1.212751 GATTTCCCTGCAACACCGC 59.787 57.895 0.00 0.00 0.00 5.68
4963 19452 0.523072 CTGATTTCCCTGCAACACCG 59.477 55.000 0.00 0.00 0.00 4.94
4964 19453 1.620822 ACTGATTTCCCTGCAACACC 58.379 50.000 0.00 0.00 0.00 4.16
4965 19454 2.622942 TCAACTGATTTCCCTGCAACAC 59.377 45.455 0.00 0.00 0.00 3.32
4966 19455 2.942804 TCAACTGATTTCCCTGCAACA 58.057 42.857 0.00 0.00 0.00 3.33
4967 19456 3.305608 CCTTCAACTGATTTCCCTGCAAC 60.306 47.826 0.00 0.00 0.00 4.17
4968 19457 2.892852 CCTTCAACTGATTTCCCTGCAA 59.107 45.455 0.00 0.00 0.00 4.08
4969 19458 2.517959 CCTTCAACTGATTTCCCTGCA 58.482 47.619 0.00 0.00 0.00 4.41
4970 19459 1.203287 GCCTTCAACTGATTTCCCTGC 59.797 52.381 0.00 0.00 0.00 4.85
4971 19460 2.800250 AGCCTTCAACTGATTTCCCTG 58.200 47.619 0.00 0.00 0.00 4.45
4972 19461 3.160269 CAAGCCTTCAACTGATTTCCCT 58.840 45.455 0.00 0.00 0.00 4.20
4973 19462 3.157087 TCAAGCCTTCAACTGATTTCCC 58.843 45.455 0.00 0.00 0.00 3.97
4974 19463 4.853924 TTCAAGCCTTCAACTGATTTCC 57.146 40.909 0.00 0.00 0.00 3.13
4975 19464 4.676924 CGTTTCAAGCCTTCAACTGATTTC 59.323 41.667 0.00 0.00 0.00 2.17
4976 19465 4.499696 CCGTTTCAAGCCTTCAACTGATTT 60.500 41.667 0.00 0.00 0.00 2.17
4977 19466 3.004734 CCGTTTCAAGCCTTCAACTGATT 59.995 43.478 0.00 0.00 0.00 2.57
4978 19467 2.554032 CCGTTTCAAGCCTTCAACTGAT 59.446 45.455 0.00 0.00 0.00 2.90
4979 19468 1.946768 CCGTTTCAAGCCTTCAACTGA 59.053 47.619 0.00 0.00 0.00 3.41
4980 19469 1.600413 GCCGTTTCAAGCCTTCAACTG 60.600 52.381 0.00 0.00 0.00 3.16
4981 19470 0.668535 GCCGTTTCAAGCCTTCAACT 59.331 50.000 0.00 0.00 0.00 3.16
4982 19471 0.668535 AGCCGTTTCAAGCCTTCAAC 59.331 50.000 0.00 0.00 0.00 3.18
4983 19472 0.951558 GAGCCGTTTCAAGCCTTCAA 59.048 50.000 0.00 0.00 0.00 2.69
4984 19473 0.179032 TGAGCCGTTTCAAGCCTTCA 60.179 50.000 0.00 0.00 0.00 3.02
4985 19474 0.519077 CTGAGCCGTTTCAAGCCTTC 59.481 55.000 0.00 0.00 0.00 3.46
4986 19475 0.890996 CCTGAGCCGTTTCAAGCCTT 60.891 55.000 0.00 0.00 0.00 4.35
4987 19476 1.302832 CCTGAGCCGTTTCAAGCCT 60.303 57.895 0.00 0.00 0.00 4.58
4988 19477 1.301677 CTCCTGAGCCGTTTCAAGCC 61.302 60.000 0.00 0.00 0.00 4.35
4989 19478 0.603975 ACTCCTGAGCCGTTTCAAGC 60.604 55.000 0.00 0.00 0.00 4.01
5040 19529 6.026513 CGCCGCTTTACTTCCTACTATATAC 58.973 44.000 0.00 0.00 0.00 1.47
5041 19530 5.707298 ACGCCGCTTTACTTCCTACTATATA 59.293 40.000 0.00 0.00 0.00 0.86
5043 19532 3.885297 ACGCCGCTTTACTTCCTACTATA 59.115 43.478 0.00 0.00 0.00 1.31
5045 19534 2.094675 ACGCCGCTTTACTTCCTACTA 58.905 47.619 0.00 0.00 0.00 1.82
5046 19535 0.893447 ACGCCGCTTTACTTCCTACT 59.107 50.000 0.00 0.00 0.00 2.57
5047 19536 0.997196 CACGCCGCTTTACTTCCTAC 59.003 55.000 0.00 0.00 0.00 3.18
5051 20417 0.438830 CAGACACGCCGCTTTACTTC 59.561 55.000 0.00 0.00 0.00 3.01
5062 20428 0.525668 CGTACTCCCATCAGACACGC 60.526 60.000 0.00 0.00 0.00 5.34
5149 20515 2.284699 CGGAACAGGAGGAGGGGT 60.285 66.667 0.00 0.00 0.00 4.95
5158 20524 0.606401 AGTGCATGAACCGGAACAGG 60.606 55.000 9.46 10.77 37.30 4.00
5163 20529 1.346395 AGTACAAGTGCATGAACCGGA 59.654 47.619 9.46 0.00 0.00 5.14
5187 20553 3.171277 GGTAATTTCGTCACTGCAATGC 58.829 45.455 0.00 0.00 0.00 3.56
5205 20571 2.489971 CAAGTTCAGAAACAGCCGGTA 58.510 47.619 1.90 0.00 37.88 4.02
5209 20575 2.358898 TCTTGCAAGTTCAGAAACAGCC 59.641 45.455 25.19 0.00 37.68 4.85
5212 20578 5.743398 CGAAAATCTTGCAAGTTCAGAAACA 59.257 36.000 25.19 3.73 37.88 2.83
5263 20630 5.089970 TGTGCATATCTACAGTTTCAGCT 57.910 39.130 0.00 0.00 0.00 4.24
5276 20643 5.653507 TCCAGATTTGCTTTTGTGCATATC 58.346 37.500 10.41 10.41 45.29 1.63
5281 20648 3.721035 ACTTCCAGATTTGCTTTTGTGC 58.279 40.909 0.00 0.00 0.00 4.57
5286 20653 7.280205 CCTACGTATTACTTCCAGATTTGCTTT 59.720 37.037 0.00 0.00 0.00 3.51
5288 20655 6.097839 TCCTACGTATTACTTCCAGATTTGCT 59.902 38.462 0.00 0.00 0.00 3.91
5290 20657 6.421202 GCTCCTACGTATTACTTCCAGATTTG 59.579 42.308 0.00 0.00 0.00 2.32
5322 20689 5.898174 TGGGTACATACGAGAATACAACAG 58.102 41.667 0.00 0.00 0.00 3.16
5338 20705 2.237643 AGCATCGGTATTGTTGGGTACA 59.762 45.455 0.00 0.00 34.12 2.90
5340 20707 2.912771 CAGCATCGGTATTGTTGGGTA 58.087 47.619 0.00 0.00 0.00 3.69
5342 20709 0.381801 GCAGCATCGGTATTGTTGGG 59.618 55.000 0.00 0.00 0.00 4.12
5375 20742 0.897621 CAGGGGGCTGTTTCATTTCC 59.102 55.000 0.00 0.00 0.00 3.13
5376 20743 1.546029 GACAGGGGGCTGTTTCATTTC 59.454 52.381 0.00 0.00 37.74 2.17
5421 20803 1.078759 GCTGGACTTGTCATCGTCGG 61.079 60.000 3.08 0.00 0.00 4.79
5442 20825 1.137697 AGAGGGGAAGAACCGTTGTT 58.862 50.000 0.00 0.00 40.11 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.