Multiple sequence alignment - TraesCS7D01G374200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G374200 chr7D 100.000 4175 0 0 1 4175 484460914 484456740 0.000000e+00 7710.0
1 TraesCS7D01G374200 chr7D 85.224 379 30 5 500 875 559223523 559223878 2.370000e-97 366.0
2 TraesCS7D01G374200 chr7D 75.184 544 104 18 1068 1591 415643098 415642566 1.170000e-55 228.0
3 TraesCS7D01G374200 chr7D 94.828 58 1 2 2453 2509 461401672 461401616 5.750000e-14 89.8
4 TraesCS7D01G374200 chr7B 93.966 1707 82 11 2471 4175 511428159 511426472 0.000000e+00 2562.0
5 TraesCS7D01G374200 chr7B 89.446 758 74 3 1697 2448 511440834 511440077 0.000000e+00 952.0
6 TraesCS7D01G374200 chr7B 91.968 498 27 5 956 1447 511459754 511459264 0.000000e+00 686.0
7 TraesCS7D01G374200 chr7B 94.799 423 17 5 1 420 511468597 511468177 0.000000e+00 654.0
8 TraesCS7D01G374200 chr7B 95.789 95 3 1 877 970 511467823 511467729 7.230000e-33 152.0
9 TraesCS7D01G374200 chr7B 95.062 81 4 0 422 502 511467899 511467819 1.220000e-25 128.0
10 TraesCS7D01G374200 chrUn 83.047 1628 215 37 2583 4175 272032149 272030548 0.000000e+00 1421.0
11 TraesCS7D01G374200 chrUn 83.047 1628 215 36 2583 4175 296576648 296575047 0.000000e+00 1421.0
12 TraesCS7D01G374200 chrUn 83.293 1239 153 30 2583 3790 272035057 272033842 0.000000e+00 1092.0
13 TraesCS7D01G374200 chr4A 83.047 1628 214 37 2583 4175 668181002 668179402 0.000000e+00 1421.0
14 TraesCS7D01G374200 chr4A 83.047 1628 215 37 2583 4175 668215670 668214069 0.000000e+00 1421.0
15 TraesCS7D01G374200 chr4A 83.047 1628 215 36 2583 4175 668223456 668221855 0.000000e+00 1421.0
16 TraesCS7D01G374200 chr4A 83.047 1628 215 36 2583 4175 668231338 668229737 0.000000e+00 1421.0
17 TraesCS7D01G374200 chr4A 82.985 1628 216 36 2583 4175 668173131 668171530 0.000000e+00 1415.0
18 TraesCS7D01G374200 chr4A 82.996 1629 212 40 2583 4175 668188882 668187283 0.000000e+00 1413.0
19 TraesCS7D01G374200 chr4A 86.170 376 33 4 500 875 662145135 662145491 5.060000e-104 388.0
20 TraesCS7D01G374200 chr4A 85.714 378 31 5 500 875 741186512 741186156 1.100000e-100 377.0
21 TraesCS7D01G374200 chr4A 82.540 378 43 5 500 875 717615739 717616095 1.130000e-80 311.0
22 TraesCS7D01G374200 chr4A 82.716 162 10 7 2367 2510 100649814 100649653 1.220000e-25 128.0
23 TraesCS7D01G374200 chr5A 82.943 1624 224 33 2583 4175 685752846 685754447 0.000000e+00 1415.0
24 TraesCS7D01G374200 chr5A 78.500 1107 168 40 1052 2141 45455614 45456667 0.000000e+00 662.0
25 TraesCS7D01G374200 chr3A 82.954 1625 222 32 2583 4175 679654445 679656046 0.000000e+00 1415.0
26 TraesCS7D01G374200 chr3A 81.437 501 76 13 1645 2141 564394891 564394404 1.090000e-105 394.0
27 TraesCS7D01G374200 chr6A 82.871 1623 227 29 2583 4175 208123727 208125328 0.000000e+00 1410.0
28 TraesCS7D01G374200 chr6A 82.862 1628 217 37 2583 4175 564265986 564267586 0.000000e+00 1404.0
29 TraesCS7D01G374200 chr3D 80.000 1105 165 39 1052 2129 424590272 424591347 0.000000e+00 765.0
30 TraesCS7D01G374200 chr3D 86.563 387 27 12 498 881 416200265 416199901 1.810000e-108 403.0
31 TraesCS7D01G374200 chr3B 79.276 1105 172 45 1052 2129 554547289 554548363 0.000000e+00 719.0
32 TraesCS7D01G374200 chr3B 81.250 160 13 6 2367 2509 346626987 346627146 3.410000e-21 113.0
33 TraesCS7D01G374200 chr5B 78.253 1122 172 47 1052 2148 61058629 61057555 0.000000e+00 654.0
34 TraesCS7D01G374200 chr5B 81.410 312 32 8 566 875 362805426 362805139 9.030000e-57 231.0
35 TraesCS7D01G374200 chr1A 88.095 378 26 2 500 875 419036049 419036409 8.290000e-117 431.0
36 TraesCS7D01G374200 chr1A 86.243 378 33 5 500 875 592558134 592558494 3.910000e-105 392.0
37 TraesCS7D01G374200 chr1A 80.625 160 14 6 2367 2509 430182129 430181970 1.590000e-19 108.0
38 TraesCS7D01G374200 chr2A 86.375 389 41 5 497 875 758470642 758471028 8.350000e-112 414.0
39 TraesCS7D01G374200 chr2A 85.714 378 33 2 500 875 726416830 726417188 3.050000e-101 379.0
40 TraesCS7D01G374200 chr2A 85.185 378 32 8 500 875 53613433 53613078 2.370000e-97 366.0
41 TraesCS7D01G374200 chr7A 86.508 378 30 9 500 875 704291786 704292144 3.020000e-106 396.0
42 TraesCS7D01G374200 chr7A 84.755 387 35 6 493 875 670005579 670005945 2.370000e-97 366.0
43 TraesCS7D01G374200 chr7A 81.481 378 34 5 500 875 15693856 15693513 1.140000e-70 278.0
44 TraesCS7D01G374200 chr2D 89.231 130 10 2 750 875 46819990 46820119 4.320000e-35 159.0
45 TraesCS7D01G374200 chr2B 87.500 136 11 2 750 879 62413444 62413579 7.230000e-33 152.0
46 TraesCS7D01G374200 chr2B 81.250 160 13 8 2367 2509 474407393 474407234 3.410000e-21 113.0
47 TraesCS7D01G374200 chr1B 80.488 164 15 8 2367 2513 658788601 658788764 4.410000e-20 110.0
48 TraesCS7D01G374200 chr1B 92.982 57 2 2 2455 2509 165772119 165772175 9.620000e-12 82.4
49 TraesCS7D01G374200 chr5D 90.625 64 3 3 2455 2515 357068004 357068067 9.620000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G374200 chr7D 484456740 484460914 4174 True 7710.000000 7710 100.000000 1 4175 1 chr7D.!!$R3 4174
1 TraesCS7D01G374200 chr7D 415642566 415643098 532 True 228.000000 228 75.184000 1068 1591 1 chr7D.!!$R1 523
2 TraesCS7D01G374200 chr7B 511426472 511428159 1687 True 2562.000000 2562 93.966000 2471 4175 1 chr7B.!!$R1 1704
3 TraesCS7D01G374200 chr7B 511440077 511440834 757 True 952.000000 952 89.446000 1697 2448 1 chr7B.!!$R2 751
4 TraesCS7D01G374200 chr7B 511467729 511468597 868 True 311.333333 654 95.216667 1 970 3 chr7B.!!$R4 969
5 TraesCS7D01G374200 chrUn 296575047 296576648 1601 True 1421.000000 1421 83.047000 2583 4175 1 chrUn.!!$R1 1592
6 TraesCS7D01G374200 chrUn 272030548 272035057 4509 True 1256.500000 1421 83.170000 2583 4175 2 chrUn.!!$R2 1592
7 TraesCS7D01G374200 chr4A 668179402 668181002 1600 True 1421.000000 1421 83.047000 2583 4175 1 chr4A.!!$R3 1592
8 TraesCS7D01G374200 chr4A 668214069 668215670 1601 True 1421.000000 1421 83.047000 2583 4175 1 chr4A.!!$R5 1592
9 TraesCS7D01G374200 chr4A 668221855 668223456 1601 True 1421.000000 1421 83.047000 2583 4175 1 chr4A.!!$R6 1592
10 TraesCS7D01G374200 chr4A 668229737 668231338 1601 True 1421.000000 1421 83.047000 2583 4175 1 chr4A.!!$R7 1592
11 TraesCS7D01G374200 chr4A 668171530 668173131 1601 True 1415.000000 1415 82.985000 2583 4175 1 chr4A.!!$R2 1592
12 TraesCS7D01G374200 chr4A 668187283 668188882 1599 True 1413.000000 1413 82.996000 2583 4175 1 chr4A.!!$R4 1592
13 TraesCS7D01G374200 chr5A 685752846 685754447 1601 False 1415.000000 1415 82.943000 2583 4175 1 chr5A.!!$F2 1592
14 TraesCS7D01G374200 chr5A 45455614 45456667 1053 False 662.000000 662 78.500000 1052 2141 1 chr5A.!!$F1 1089
15 TraesCS7D01G374200 chr3A 679654445 679656046 1601 False 1415.000000 1415 82.954000 2583 4175 1 chr3A.!!$F1 1592
16 TraesCS7D01G374200 chr6A 208123727 208125328 1601 False 1410.000000 1410 82.871000 2583 4175 1 chr6A.!!$F1 1592
17 TraesCS7D01G374200 chr6A 564265986 564267586 1600 False 1404.000000 1404 82.862000 2583 4175 1 chr6A.!!$F2 1592
18 TraesCS7D01G374200 chr3D 424590272 424591347 1075 False 765.000000 765 80.000000 1052 2129 1 chr3D.!!$F1 1077
19 TraesCS7D01G374200 chr3B 554547289 554548363 1074 False 719.000000 719 79.276000 1052 2129 1 chr3B.!!$F2 1077
20 TraesCS7D01G374200 chr5B 61057555 61058629 1074 True 654.000000 654 78.253000 1052 2148 1 chr5B.!!$R1 1096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
663 943 0.035317 AAGCGGTCTCATCTGCAACA 59.965 50.0 0.00 0.00 41.63 3.33 F
798 1078 0.035534 TTTTATGCGGCTGCTGGAGA 60.036 50.0 20.27 1.01 43.34 3.71 F
833 1113 0.110192 GCGCGCTAAAAGCAGTCTTT 60.110 50.0 26.67 0.00 42.58 2.52 F
843 1123 0.174845 AGCAGTCTTTATACCGCGCA 59.825 50.0 8.75 0.00 0.00 6.09 F
2130 2441 0.176680 AGGCATGTCTAGGCGACTTG 59.823 55.0 0.00 0.00 45.60 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 2000 0.319040 CGATGACGGCCTGGAGTATG 60.319 60.000 0.00 0.00 35.72 2.39 R
2584 2901 0.811281 AGTTGCAGAAATAAGGCGGC 59.189 50.000 0.00 0.00 0.00 6.53 R
2761 3082 2.403259 TGTGTTATGTGTGCTCACTCG 58.597 47.619 18.85 0.00 44.14 4.18 R
2810 3133 3.594134 AGCGAGGAAGAGATTGAAGTTG 58.406 45.455 0.00 0.00 0.00 3.16 R
4102 7358 0.989890 GGTTCATCTTTCGACGGTCG 59.010 55.000 23.73 23.73 42.10 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 98 8.767478 ATATTCAAGCCAAAAAGAATGACAAG 57.233 30.769 0.00 0.00 33.22 3.16
220 222 9.797642 AATCATTAAACAGATACATGGATGCTA 57.202 29.630 0.00 0.00 0.00 3.49
413 417 4.008074 ACCATCACGAACAGAAGTTGAT 57.992 40.909 0.00 0.00 38.30 2.57
420 424 2.604914 CGAACAGAAGTTGATGGGATCG 59.395 50.000 0.00 0.00 38.30 3.69
437 717 6.841601 TGGGATCGGAGAATCATTTAGAAAT 58.158 36.000 0.00 0.00 43.58 2.17
456 736 6.546484 AGAAATATGGACCATGGGATTACAG 58.454 40.000 18.09 0.00 0.00 2.74
496 776 3.135994 GCCGTCTGACAAAAGTTCCTTA 58.864 45.455 8.73 0.00 0.00 2.69
497 777 3.751698 GCCGTCTGACAAAAGTTCCTTAT 59.248 43.478 8.73 0.00 0.00 1.73
498 778 4.378459 GCCGTCTGACAAAAGTTCCTTATG 60.378 45.833 8.73 0.00 0.00 1.90
499 779 4.994852 CCGTCTGACAAAAGTTCCTTATGA 59.005 41.667 8.73 0.00 0.00 2.15
500 780 5.120830 CCGTCTGACAAAAGTTCCTTATGAG 59.879 44.000 8.73 0.00 0.00 2.90
501 781 5.926542 CGTCTGACAAAAGTTCCTTATGAGA 59.073 40.000 8.73 0.00 0.00 3.27
502 782 6.090088 CGTCTGACAAAAGTTCCTTATGAGAG 59.910 42.308 8.73 0.00 0.00 3.20
503 783 5.934625 TCTGACAAAAGTTCCTTATGAGAGC 59.065 40.000 0.00 0.00 0.00 4.09
504 784 5.620206 TGACAAAAGTTCCTTATGAGAGCA 58.380 37.500 0.00 0.00 0.00 4.26
505 785 6.240894 TGACAAAAGTTCCTTATGAGAGCAT 58.759 36.000 0.00 0.00 38.54 3.79
506 786 6.372659 TGACAAAAGTTCCTTATGAGAGCATC 59.627 38.462 0.00 0.00 35.94 3.91
517 797 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
518 798 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
519 799 3.512516 GCATCTCCAACAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
520 800 2.825836 CATCTCCAACAGCCGCCC 60.826 66.667 0.00 0.00 0.00 6.13
521 801 3.329889 ATCTCCAACAGCCGCCCA 61.330 61.111 0.00 0.00 0.00 5.36
522 802 2.905996 ATCTCCAACAGCCGCCCAA 61.906 57.895 0.00 0.00 0.00 4.12
523 803 2.215451 ATCTCCAACAGCCGCCCAAT 62.215 55.000 0.00 0.00 0.00 3.16
524 804 2.676121 TCCAACAGCCGCCCAATG 60.676 61.111 0.00 0.00 0.00 2.82
525 805 4.440127 CCAACAGCCGCCCAATGC 62.440 66.667 0.00 0.00 0.00 3.56
558 838 5.517322 AAAAACGGGTTTACAGCACATAA 57.483 34.783 0.00 0.00 31.63 1.90
559 839 4.759516 AAACGGGTTTACAGCACATAAG 57.240 40.909 0.00 0.00 0.00 1.73
560 840 3.412237 ACGGGTTTACAGCACATAAGT 57.588 42.857 0.00 0.00 0.00 2.24
561 841 4.540359 ACGGGTTTACAGCACATAAGTA 57.460 40.909 0.00 0.00 0.00 2.24
562 842 4.501071 ACGGGTTTACAGCACATAAGTAG 58.499 43.478 0.00 0.00 0.00 2.57
563 843 4.221262 ACGGGTTTACAGCACATAAGTAGA 59.779 41.667 0.00 0.00 0.00 2.59
564 844 5.105064 ACGGGTTTACAGCACATAAGTAGAT 60.105 40.000 0.00 0.00 0.00 1.98
565 845 5.815740 CGGGTTTACAGCACATAAGTAGATT 59.184 40.000 0.00 0.00 0.00 2.40
566 846 6.315393 CGGGTTTACAGCACATAAGTAGATTT 59.685 38.462 0.00 0.00 0.00 2.17
567 847 7.148306 CGGGTTTACAGCACATAAGTAGATTTT 60.148 37.037 0.00 0.00 0.00 1.82
568 848 8.520351 GGGTTTACAGCACATAAGTAGATTTTT 58.480 33.333 0.00 0.00 0.00 1.94
587 867 4.612264 TTTTTAGGGCACTAGAAGACGT 57.388 40.909 0.00 0.00 0.00 4.34
588 868 4.612264 TTTTAGGGCACTAGAAGACGTT 57.388 40.909 0.00 0.00 0.00 3.99
589 869 4.612264 TTTAGGGCACTAGAAGACGTTT 57.388 40.909 0.00 0.00 0.00 3.60
590 870 2.457366 AGGGCACTAGAAGACGTTTG 57.543 50.000 0.00 0.00 0.00 2.93
591 871 0.796927 GGGCACTAGAAGACGTTTGC 59.203 55.000 0.00 0.00 0.00 3.68
592 872 1.608283 GGGCACTAGAAGACGTTTGCT 60.608 52.381 0.00 0.00 0.00 3.91
593 873 1.727335 GGCACTAGAAGACGTTTGCTC 59.273 52.381 0.00 0.00 0.00 4.26
594 874 1.727335 GCACTAGAAGACGTTTGCTCC 59.273 52.381 0.00 0.00 0.00 4.70
595 875 2.866460 GCACTAGAAGACGTTTGCTCCA 60.866 50.000 0.00 0.00 0.00 3.86
596 876 3.390135 CACTAGAAGACGTTTGCTCCAA 58.610 45.455 0.00 0.00 0.00 3.53
597 877 3.184581 CACTAGAAGACGTTTGCTCCAAC 59.815 47.826 0.00 0.00 0.00 3.77
598 878 2.325583 AGAAGACGTTTGCTCCAACA 57.674 45.000 0.00 0.00 0.00 3.33
599 879 2.639065 AGAAGACGTTTGCTCCAACAA 58.361 42.857 0.00 0.00 0.00 2.83
600 880 2.614057 AGAAGACGTTTGCTCCAACAAG 59.386 45.455 0.00 0.00 0.00 3.16
601 881 0.663153 AGACGTTTGCTCCAACAAGC 59.337 50.000 0.00 0.00 42.82 4.01
602 882 4.210447 CGTTTGCTCCAACAAGCG 57.790 55.556 0.00 0.00 45.37 4.68
603 883 2.010817 CGTTTGCTCCAACAAGCGC 61.011 57.895 0.00 0.00 44.96 5.92
604 884 1.360192 GTTTGCTCCAACAAGCGCT 59.640 52.632 2.64 2.64 45.54 5.92
605 885 0.936297 GTTTGCTCCAACAAGCGCTG 60.936 55.000 12.58 8.13 45.54 5.18
606 886 2.682256 TTTGCTCCAACAAGCGCTGC 62.682 55.000 12.58 8.98 45.54 5.25
607 887 3.663176 GCTCCAACAAGCGCTGCA 61.663 61.111 12.58 0.00 31.56 4.41
608 888 3.033184 CTCCAACAAGCGCTGCAA 58.967 55.556 12.58 0.00 0.00 4.08
609 889 1.359833 CTCCAACAAGCGCTGCAAA 59.640 52.632 12.58 0.00 0.00 3.68
610 890 0.248990 CTCCAACAAGCGCTGCAAAA 60.249 50.000 12.58 0.00 0.00 2.44
611 891 0.388659 TCCAACAAGCGCTGCAAAAT 59.611 45.000 12.58 0.00 0.00 1.82
612 892 1.611006 TCCAACAAGCGCTGCAAAATA 59.389 42.857 12.58 0.00 0.00 1.40
613 893 2.230992 TCCAACAAGCGCTGCAAAATAT 59.769 40.909 12.58 0.00 0.00 1.28
614 894 2.346244 CCAACAAGCGCTGCAAAATATG 59.654 45.455 12.58 5.08 0.00 1.78
623 903 3.205095 CAAAATATGCTGCGCGCG 58.795 55.556 28.44 28.44 43.27 6.86
624 904 2.651863 AAAATATGCTGCGCGCGC 60.652 55.556 45.02 45.02 43.27 6.86
625 905 4.943591 AAATATGCTGCGCGCGCG 62.944 61.111 45.73 45.73 45.51 6.86
641 921 3.691342 CGAGTCCAGCGGTCCCAA 61.691 66.667 0.00 0.00 0.00 4.12
642 922 2.990479 GAGTCCAGCGGTCCCAAT 59.010 61.111 0.00 0.00 0.00 3.16
643 923 1.153349 GAGTCCAGCGGTCCCAATC 60.153 63.158 0.00 0.00 0.00 2.67
644 924 1.899437 GAGTCCAGCGGTCCCAATCA 61.899 60.000 0.00 0.00 0.00 2.57
645 925 1.002624 GTCCAGCGGTCCCAATCAA 60.003 57.895 0.00 0.00 0.00 2.57
646 926 1.026718 GTCCAGCGGTCCCAATCAAG 61.027 60.000 0.00 0.00 0.00 3.02
647 927 2.409870 CCAGCGGTCCCAATCAAGC 61.410 63.158 0.00 0.00 0.00 4.01
648 928 2.436646 AGCGGTCCCAATCAAGCG 60.437 61.111 0.00 0.00 39.26 4.68
649 929 3.508840 GCGGTCCCAATCAAGCGG 61.509 66.667 0.00 0.00 36.91 5.52
650 930 2.046314 CGGTCCCAATCAAGCGGT 60.046 61.111 0.00 0.00 33.05 5.68
651 931 2.106683 CGGTCCCAATCAAGCGGTC 61.107 63.158 0.00 0.00 33.05 4.79
652 932 1.299976 GGTCCCAATCAAGCGGTCT 59.700 57.895 0.00 0.00 0.00 3.85
653 933 0.744771 GGTCCCAATCAAGCGGTCTC 60.745 60.000 0.00 0.00 0.00 3.36
654 934 0.036388 GTCCCAATCAAGCGGTCTCA 60.036 55.000 0.00 0.00 0.00 3.27
655 935 0.911769 TCCCAATCAAGCGGTCTCAT 59.088 50.000 0.00 0.00 0.00 2.90
656 936 1.134401 TCCCAATCAAGCGGTCTCATC 60.134 52.381 0.00 0.00 0.00 2.92
657 937 1.134280 CCCAATCAAGCGGTCTCATCT 60.134 52.381 0.00 0.00 0.00 2.90
658 938 1.938577 CCAATCAAGCGGTCTCATCTG 59.061 52.381 0.00 0.00 0.00 2.90
659 939 1.329906 CAATCAAGCGGTCTCATCTGC 59.670 52.381 0.00 0.00 39.72 4.26
660 940 0.538584 ATCAAGCGGTCTCATCTGCA 59.461 50.000 0.00 0.00 41.63 4.41
661 941 0.321346 TCAAGCGGTCTCATCTGCAA 59.679 50.000 0.00 0.00 41.63 4.08
662 942 0.445436 CAAGCGGTCTCATCTGCAAC 59.555 55.000 0.00 0.00 41.63 4.17
663 943 0.035317 AAGCGGTCTCATCTGCAACA 59.965 50.000 0.00 0.00 41.63 3.33
664 944 0.390866 AGCGGTCTCATCTGCAACAG 60.391 55.000 0.00 0.00 41.63 3.16
665 945 1.975363 GCGGTCTCATCTGCAACAGC 61.975 60.000 0.00 0.00 39.28 4.40
666 946 0.671472 CGGTCTCATCTGCAACAGCA 60.671 55.000 0.00 0.00 36.69 4.41
667 947 0.801251 GGTCTCATCTGCAACAGCAC 59.199 55.000 0.00 0.00 33.99 4.40
668 948 1.516161 GTCTCATCTGCAACAGCACA 58.484 50.000 0.00 0.00 33.99 4.57
669 949 1.875514 GTCTCATCTGCAACAGCACAA 59.124 47.619 0.00 0.00 33.99 3.33
670 950 2.291465 GTCTCATCTGCAACAGCACAAA 59.709 45.455 0.00 0.00 33.99 2.83
671 951 2.551032 TCTCATCTGCAACAGCACAAAG 59.449 45.455 0.00 0.00 33.99 2.77
672 952 2.292569 CTCATCTGCAACAGCACAAAGT 59.707 45.455 0.00 0.00 33.99 2.66
673 953 2.689471 TCATCTGCAACAGCACAAAGTT 59.311 40.909 0.00 0.00 33.99 2.66
674 954 3.130869 TCATCTGCAACAGCACAAAGTTT 59.869 39.130 0.00 0.00 33.99 2.66
675 955 3.149436 TCTGCAACAGCACAAAGTTTC 57.851 42.857 0.00 0.00 33.99 2.78
676 956 2.159254 TCTGCAACAGCACAAAGTTTCC 60.159 45.455 0.00 0.00 33.99 3.13
677 957 1.547820 TGCAACAGCACAAAGTTTCCA 59.452 42.857 0.00 0.00 32.31 3.53
678 958 2.195922 GCAACAGCACAAAGTTTCCAG 58.804 47.619 0.00 0.00 0.00 3.86
679 959 2.195922 CAACAGCACAAAGTTTCCAGC 58.804 47.619 0.00 0.00 0.00 4.85
680 960 0.381801 ACAGCACAAAGTTTCCAGCG 59.618 50.000 0.00 0.00 0.00 5.18
681 961 0.936297 CAGCACAAAGTTTCCAGCGC 60.936 55.000 0.00 0.00 0.00 5.92
682 962 2.010817 GCACAAAGTTTCCAGCGCG 61.011 57.895 0.00 0.00 0.00 6.86
683 963 2.010817 CACAAAGTTTCCAGCGCGC 61.011 57.895 26.66 26.66 0.00 6.86
684 964 2.796617 CAAAGTTTCCAGCGCGCG 60.797 61.111 28.44 28.44 0.00 6.86
685 965 3.276846 AAAGTTTCCAGCGCGCGT 61.277 55.556 32.35 15.53 0.00 6.01
686 966 3.521308 AAAGTTTCCAGCGCGCGTG 62.521 57.895 32.35 25.45 0.00 5.34
687 967 4.961511 AGTTTCCAGCGCGCGTGA 62.962 61.111 32.35 22.86 0.00 4.35
688 968 4.719616 GTTTCCAGCGCGCGTGAC 62.720 66.667 32.35 15.19 0.00 3.67
700 980 2.256158 CGTGACCGGACGCACTAA 59.744 61.111 9.46 0.00 32.98 2.24
701 981 1.372004 CGTGACCGGACGCACTAAA 60.372 57.895 9.46 0.00 32.98 1.85
702 982 0.734942 CGTGACCGGACGCACTAAAT 60.735 55.000 9.46 0.00 32.98 1.40
703 983 1.467883 CGTGACCGGACGCACTAAATA 60.468 52.381 9.46 0.00 32.98 1.40
704 984 2.797087 CGTGACCGGACGCACTAAATAT 60.797 50.000 9.46 0.00 32.98 1.28
705 985 2.538449 GTGACCGGACGCACTAAATATG 59.462 50.000 9.46 0.00 32.44 1.78
706 986 1.525619 GACCGGACGCACTAAATATGC 59.474 52.381 9.46 0.00 39.81 3.14
707 987 1.138266 ACCGGACGCACTAAATATGCT 59.862 47.619 9.46 0.00 41.10 3.79
708 988 1.526887 CCGGACGCACTAAATATGCTG 59.473 52.381 0.00 0.00 41.10 4.41
709 989 1.070577 CGGACGCACTAAATATGCTGC 60.071 52.381 0.00 0.00 41.10 5.25
711 991 3.062786 CGCACTAAATATGCTGCGC 57.937 52.632 0.00 0.00 45.19 6.09
712 992 0.719194 CGCACTAAATATGCTGCGCG 60.719 55.000 0.00 0.00 45.19 6.86
713 993 0.993746 GCACTAAATATGCTGCGCGC 60.994 55.000 27.26 27.26 40.08 6.86
714 994 0.719194 CACTAAATATGCTGCGCGCG 60.719 55.000 28.44 28.44 43.27 6.86
715 995 0.874175 ACTAAATATGCTGCGCGCGA 60.874 50.000 37.18 17.91 43.27 5.87
716 996 0.439985 CTAAATATGCTGCGCGCGAT 59.560 50.000 37.18 20.72 43.27 4.58
717 997 0.163574 TAAATATGCTGCGCGCGATG 59.836 50.000 37.18 25.13 43.27 3.84
718 998 3.584250 AATATGCTGCGCGCGATGC 62.584 57.895 37.18 33.14 43.27 3.91
723 1003 4.465512 CTGCGCGCGATGCCTTTT 62.466 61.111 37.18 0.00 42.08 2.27
724 1004 3.951655 CTGCGCGCGATGCCTTTTT 62.952 57.895 37.18 0.00 42.08 1.94
725 1005 2.099446 GCGCGCGATGCCTTTTTA 59.901 55.556 37.18 0.00 42.08 1.52
726 1006 1.513160 GCGCGCGATGCCTTTTTAA 60.513 52.632 37.18 0.00 42.08 1.52
727 1007 0.865639 GCGCGCGATGCCTTTTTAAT 60.866 50.000 37.18 0.00 42.08 1.40
728 1008 0.839477 CGCGCGATGCCTTTTTAATG 59.161 50.000 28.94 0.00 42.08 1.90
729 1009 0.572125 GCGCGATGCCTTTTTAATGC 59.428 50.000 12.10 0.00 37.76 3.56
730 1010 0.839477 CGCGATGCCTTTTTAATGCG 59.161 50.000 0.00 0.00 38.28 4.73
731 1011 0.572125 GCGATGCCTTTTTAATGCGC 59.428 50.000 0.00 0.00 36.35 6.09
732 1012 0.839477 CGATGCCTTTTTAATGCGCG 59.161 50.000 0.00 0.00 0.00 6.86
733 1013 0.572125 GATGCCTTTTTAATGCGCGC 59.428 50.000 27.26 27.26 0.00 6.86
734 1014 1.139226 ATGCCTTTTTAATGCGCGCG 61.139 50.000 28.44 28.44 0.00 6.86
735 1015 2.986809 CCTTTTTAATGCGCGCGC 59.013 55.556 45.02 45.02 42.35 6.86
745 1025 3.003478 GCGCGCGCTACATTAGTT 58.997 55.556 44.38 0.00 38.26 2.24
746 1026 2.209872 GCGCGCGCTACATTAGTTA 58.790 52.632 44.38 0.00 38.26 2.24
747 1027 0.782384 GCGCGCGCTACATTAGTTAT 59.218 50.000 44.38 0.00 38.26 1.89
748 1028 1.980844 GCGCGCGCTACATTAGTTATA 59.019 47.619 44.38 0.00 38.26 0.98
749 1029 2.026507 GCGCGCGCTACATTAGTTATAG 59.973 50.000 44.38 9.08 38.26 1.31
750 1030 2.026507 CGCGCGCTACATTAGTTATAGC 59.973 50.000 30.48 0.00 38.36 2.97
754 1034 3.619751 GCTACATTAGTTATAGCGCGC 57.380 47.619 26.66 26.66 32.61 6.86
755 1035 2.026507 GCTACATTAGTTATAGCGCGCG 59.973 50.000 28.44 28.44 32.61 6.86
756 1036 0.782384 ACATTAGTTATAGCGCGCGC 59.218 50.000 45.10 45.10 42.33 6.86
766 1046 3.003478 GCGCGCGCTACATTAGTT 58.997 55.556 44.38 0.00 38.26 2.24
767 1047 2.209872 GCGCGCGCTACATTAGTTA 58.790 52.632 44.38 0.00 38.26 2.24
768 1048 0.782384 GCGCGCGCTACATTAGTTAT 59.218 50.000 44.38 0.00 38.26 1.89
769 1049 1.980844 GCGCGCGCTACATTAGTTATA 59.019 47.619 44.38 0.00 38.26 0.98
770 1050 2.026507 GCGCGCGCTACATTAGTTATAG 59.973 50.000 44.38 9.08 38.26 1.31
771 1051 2.026507 CGCGCGCTACATTAGTTATAGC 59.973 50.000 30.48 0.00 38.36 2.97
775 1055 3.619751 GCTACATTAGTTATAGCGCGC 57.380 47.619 26.66 26.66 32.61 6.86
776 1056 2.026507 GCTACATTAGTTATAGCGCGCG 59.973 50.000 28.44 28.44 32.61 6.86
777 1057 0.782384 ACATTAGTTATAGCGCGCGC 59.218 50.000 45.10 45.10 42.33 6.86
794 1074 2.657336 GCTTTTTATGCGGCTGCTG 58.343 52.632 20.27 3.55 43.34 4.41
795 1075 0.803380 GCTTTTTATGCGGCTGCTGG 60.803 55.000 20.27 0.00 43.34 4.85
796 1076 0.810648 CTTTTTATGCGGCTGCTGGA 59.189 50.000 20.27 8.07 43.34 3.86
797 1077 0.810648 TTTTTATGCGGCTGCTGGAG 59.189 50.000 20.27 0.00 43.34 3.86
798 1078 0.035534 TTTTATGCGGCTGCTGGAGA 60.036 50.000 20.27 1.01 43.34 3.71
799 1079 0.744414 TTTATGCGGCTGCTGGAGAC 60.744 55.000 20.27 0.00 43.34 3.36
800 1080 1.617018 TTATGCGGCTGCTGGAGACT 61.617 55.000 20.27 0.00 43.34 3.24
801 1081 2.021068 TATGCGGCTGCTGGAGACTC 62.021 60.000 20.27 0.00 43.34 3.36
802 1082 4.828925 GCGGCTGCTGGAGACTCC 62.829 72.222 15.13 15.13 38.39 3.85
803 1083 3.385384 CGGCTGCTGGAGACTCCA 61.385 66.667 22.97 22.97 45.98 3.86
811 1091 3.082619 TGGAGACTCCAAATCGGGT 57.917 52.632 22.30 0.00 45.00 5.28
812 1092 2.241281 TGGAGACTCCAAATCGGGTA 57.759 50.000 22.30 0.00 45.00 3.69
813 1093 1.829222 TGGAGACTCCAAATCGGGTAC 59.171 52.381 22.30 0.00 45.00 3.34
814 1094 1.202382 GGAGACTCCAAATCGGGTACG 60.202 57.143 17.10 0.00 36.28 3.67
815 1095 0.175073 AGACTCCAAATCGGGTACGC 59.825 55.000 0.00 0.00 40.69 4.42
816 1096 1.143969 GACTCCAAATCGGGTACGCG 61.144 60.000 24.83 24.83 40.69 6.01
817 1097 2.509786 TCCAAATCGGGTACGCGC 60.510 61.111 25.81 0.00 40.69 6.86
824 1104 3.180614 CGGGTACGCGCGCTAAAA 61.181 61.111 32.58 7.58 43.69 1.52
825 1105 2.699212 GGGTACGCGCGCTAAAAG 59.301 61.111 32.58 15.76 0.00 2.27
826 1106 2.020969 GGTACGCGCGCTAAAAGC 59.979 61.111 32.58 15.84 38.02 3.51
827 1107 2.732670 GGTACGCGCGCTAAAAGCA 61.733 57.895 32.58 0.00 42.58 3.91
828 1108 1.295930 GTACGCGCGCTAAAAGCAG 60.296 57.895 32.58 13.34 42.58 4.24
829 1109 1.735198 TACGCGCGCTAAAAGCAGT 60.735 52.632 32.58 18.71 42.58 4.40
830 1110 1.680105 TACGCGCGCTAAAAGCAGTC 61.680 55.000 32.58 0.00 42.58 3.51
831 1111 2.730672 CGCGCGCTAAAAGCAGTCT 61.731 57.895 30.48 0.00 42.58 3.24
832 1112 1.497722 GCGCGCTAAAAGCAGTCTT 59.502 52.632 26.67 0.00 42.58 3.01
833 1113 0.110192 GCGCGCTAAAAGCAGTCTTT 60.110 50.000 26.67 0.00 42.58 2.52
834 1114 1.127951 GCGCGCTAAAAGCAGTCTTTA 59.872 47.619 26.67 0.00 42.58 1.85
835 1115 2.223044 GCGCGCTAAAAGCAGTCTTTAT 60.223 45.455 26.67 0.00 42.58 1.40
836 1116 3.000925 GCGCGCTAAAAGCAGTCTTTATA 59.999 43.478 26.67 0.00 42.58 0.98
837 1117 4.506217 CGCGCTAAAAGCAGTCTTTATAC 58.494 43.478 5.56 0.00 42.58 1.47
838 1118 4.550255 CGCGCTAAAAGCAGTCTTTATACC 60.550 45.833 5.56 0.00 42.58 2.73
839 1119 4.550255 GCGCTAAAAGCAGTCTTTATACCG 60.550 45.833 0.00 0.00 42.58 4.02
840 1120 4.550255 CGCTAAAAGCAGTCTTTATACCGC 60.550 45.833 0.00 0.00 42.58 5.68
841 1121 4.550255 GCTAAAAGCAGTCTTTATACCGCG 60.550 45.833 0.00 0.00 41.40 6.46
842 1122 1.287425 AAGCAGTCTTTATACCGCGC 58.713 50.000 0.00 0.00 0.00 6.86
843 1123 0.174845 AGCAGTCTTTATACCGCGCA 59.825 50.000 8.75 0.00 0.00 6.09
844 1124 1.202533 AGCAGTCTTTATACCGCGCAT 60.203 47.619 8.75 0.00 0.00 4.73
845 1125 1.192534 GCAGTCTTTATACCGCGCATC 59.807 52.381 8.75 0.00 0.00 3.91
846 1126 1.452025 CAGTCTTTATACCGCGCATCG 59.548 52.381 8.75 0.00 38.08 3.84
869 1149 6.862944 GCTTATATAGCGCTTCTGTTAGAG 57.137 41.667 18.68 5.30 40.71 2.43
870 1150 6.613233 GCTTATATAGCGCTTCTGTTAGAGA 58.387 40.000 18.68 0.00 40.71 3.10
871 1151 7.254852 GCTTATATAGCGCTTCTGTTAGAGAT 58.745 38.462 18.68 0.28 40.71 2.75
872 1152 7.219917 GCTTATATAGCGCTTCTGTTAGAGATG 59.780 40.741 18.68 0.00 40.71 2.90
873 1153 1.933247 AGCGCTTCTGTTAGAGATGC 58.067 50.000 2.64 7.10 44.71 3.91
874 1154 1.480137 AGCGCTTCTGTTAGAGATGCT 59.520 47.619 2.64 5.79 45.55 3.79
875 1155 2.690497 AGCGCTTCTGTTAGAGATGCTA 59.310 45.455 2.64 0.00 45.55 3.49
904 1184 5.703876 CTTCTGATAAGAAGTGTTTTGCCC 58.296 41.667 11.34 0.00 40.13 5.36
906 1186 2.817258 TGATAAGAAGTGTTTTGCCCGG 59.183 45.455 0.00 0.00 0.00 5.73
956 1236 6.601613 TGCTAATCAAAGTTGGATCCGTTAAT 59.398 34.615 7.39 0.00 0.00 1.40
966 1246 7.848128 AGTTGGATCCGTTAATTTTCTCTCTA 58.152 34.615 7.39 0.00 0.00 2.43
985 1265 9.749340 TCTCTCTATATATAAATCGGTTCCACA 57.251 33.333 0.00 0.00 0.00 4.17
991 1271 2.812358 AAATCGGTTCCACAAAAGGC 57.188 45.000 0.00 0.00 0.00 4.35
992 1272 0.966179 AATCGGTTCCACAAAAGGCC 59.034 50.000 0.00 0.00 0.00 5.19
993 1273 0.898326 ATCGGTTCCACAAAAGGCCC 60.898 55.000 0.00 0.00 0.00 5.80
994 1274 2.914908 CGGTTCCACAAAAGGCCCG 61.915 63.158 0.00 0.00 36.84 6.13
995 1275 2.570284 GGTTCCACAAAAGGCCCGG 61.570 63.158 0.00 0.00 0.00 5.73
996 1276 1.830847 GTTCCACAAAAGGCCCGGT 60.831 57.895 0.00 0.00 0.00 5.28
997 1277 1.075896 TTCCACAAAAGGCCCGGTT 60.076 52.632 0.00 0.00 0.00 4.44
998 1278 1.110518 TTCCACAAAAGGCCCGGTTC 61.111 55.000 0.00 0.00 0.00 3.62
999 1279 2.570284 CCACAAAAGGCCCGGTTCC 61.570 63.158 0.00 0.35 0.00 3.62
1000 1280 1.830408 CACAAAAGGCCCGGTTCCA 60.830 57.895 11.96 0.00 0.00 3.53
1001 1281 1.830847 ACAAAAGGCCCGGTTCCAC 60.831 57.895 11.96 0.00 0.00 4.02
1002 1282 1.830408 CAAAAGGCCCGGTTCCACA 60.830 57.895 11.96 0.00 0.00 4.17
1003 1283 1.530655 AAAAGGCCCGGTTCCACAG 60.531 57.895 11.96 0.00 0.00 3.66
1004 1284 2.002018 AAAAGGCCCGGTTCCACAGA 62.002 55.000 11.96 0.00 0.00 3.41
1005 1285 2.002018 AAAGGCCCGGTTCCACAGAA 62.002 55.000 11.96 0.00 0.00 3.02
1017 1297 4.530710 TTCCACAGAACAATACGTAGCT 57.469 40.909 0.08 0.00 0.00 3.32
1018 1298 5.648178 TTCCACAGAACAATACGTAGCTA 57.352 39.130 0.08 0.00 0.00 3.32
1019 1299 5.244785 TCCACAGAACAATACGTAGCTAG 57.755 43.478 0.08 0.00 0.00 3.42
1020 1300 4.945543 TCCACAGAACAATACGTAGCTAGA 59.054 41.667 0.08 0.00 0.00 2.43
1021 1301 5.416639 TCCACAGAACAATACGTAGCTAGAA 59.583 40.000 0.08 0.00 0.00 2.10
1022 1302 5.744345 CCACAGAACAATACGTAGCTAGAAG 59.256 44.000 0.08 0.00 0.00 2.85
1023 1303 6.404403 CCACAGAACAATACGTAGCTAGAAGA 60.404 42.308 0.08 0.00 0.00 2.87
1024 1304 6.689241 CACAGAACAATACGTAGCTAGAAGAG 59.311 42.308 0.08 0.00 0.00 2.85
1025 1305 6.598457 ACAGAACAATACGTAGCTAGAAGAGA 59.402 38.462 0.08 0.00 0.00 3.10
1026 1306 7.120873 ACAGAACAATACGTAGCTAGAAGAGAA 59.879 37.037 0.08 0.00 0.00 2.87
1027 1307 7.642194 CAGAACAATACGTAGCTAGAAGAGAAG 59.358 40.741 0.08 0.00 0.00 2.85
1028 1308 7.337436 AGAACAATACGTAGCTAGAAGAGAAGT 59.663 37.037 0.08 0.00 0.00 3.01
1029 1309 7.393841 ACAATACGTAGCTAGAAGAGAAGTT 57.606 36.000 0.08 0.00 0.00 2.66
1030 1310 7.251994 ACAATACGTAGCTAGAAGAGAAGTTG 58.748 38.462 0.08 0.00 0.00 3.16
1031 1311 4.705337 ACGTAGCTAGAAGAGAAGTTGG 57.295 45.455 0.00 0.00 0.00 3.77
1032 1312 3.119424 ACGTAGCTAGAAGAGAAGTTGGC 60.119 47.826 0.00 0.00 0.00 4.52
1033 1313 2.663826 AGCTAGAAGAGAAGTTGGCG 57.336 50.000 0.00 0.00 0.00 5.69
1034 1314 1.896465 AGCTAGAAGAGAAGTTGGCGT 59.104 47.619 0.00 0.00 0.00 5.68
1035 1315 2.300437 AGCTAGAAGAGAAGTTGGCGTT 59.700 45.455 0.00 0.00 0.00 4.84
1036 1316 2.413453 GCTAGAAGAGAAGTTGGCGTTG 59.587 50.000 0.00 0.00 0.00 4.10
1037 1317 1.230324 AGAAGAGAAGTTGGCGTTGC 58.770 50.000 0.00 0.00 0.00 4.17
1038 1318 1.202698 AGAAGAGAAGTTGGCGTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
1039 1319 1.604278 GAAGAGAAGTTGGCGTTGCTT 59.396 47.619 0.00 0.00 0.00 3.91
1040 1320 1.230324 AGAGAAGTTGGCGTTGCTTC 58.770 50.000 0.00 0.00 38.97 3.86
1041 1321 3.403936 AGAAGTTGGCGTTGCTTCT 57.596 47.368 0.00 0.00 42.65 2.85
1042 1322 0.947244 AGAAGTTGGCGTTGCTTCTG 59.053 50.000 10.38 0.00 44.82 3.02
1043 1323 0.661483 GAAGTTGGCGTTGCTTCTGC 60.661 55.000 0.00 0.00 36.59 4.26
1044 1324 1.103398 AAGTTGGCGTTGCTTCTGCT 61.103 50.000 0.00 0.00 40.48 4.24
1045 1325 1.103398 AGTTGGCGTTGCTTCTGCTT 61.103 50.000 0.00 0.00 40.48 3.91
1046 1326 0.936297 GTTGGCGTTGCTTCTGCTTG 60.936 55.000 0.00 0.00 40.48 4.01
1047 1327 2.074230 TTGGCGTTGCTTCTGCTTGG 62.074 55.000 0.00 0.00 40.48 3.61
1048 1328 2.429739 GCGTTGCTTCTGCTTGGC 60.430 61.111 0.00 0.00 40.48 4.52
1049 1329 2.127118 CGTTGCTTCTGCTTGGCG 60.127 61.111 0.00 0.00 40.48 5.69
1050 1330 2.429739 GTTGCTTCTGCTTGGCGC 60.430 61.111 0.00 0.00 40.48 6.53
1105 1386 2.600769 ACCGGCTGTCGAACCTCT 60.601 61.111 1.87 0.00 42.43 3.69
1131 1412 0.686441 ACCTGCTACGGTGCATCCTA 60.686 55.000 5.12 0.00 42.48 2.94
1255 1536 3.569049 GACCACCTGGACGACCACG 62.569 68.421 1.37 1.62 41.77 4.94
1256 1537 3.299977 CCACCTGGACGACCACGA 61.300 66.667 1.37 0.00 41.77 4.35
1281 1562 2.788176 CGACGTCATTGTGCGCGAT 61.788 57.895 17.16 0.00 32.62 4.58
1290 1571 1.231296 TTGTGCGCGATGCCAGTAAA 61.231 50.000 12.10 0.00 45.60 2.01
1373 1654 0.760945 GGAGAGGACGACCCATGGAT 60.761 60.000 15.22 0.00 37.41 3.41
1375 1656 0.760945 AGAGGACGACCCATGGATCC 60.761 60.000 15.22 14.16 37.41 3.36
1379 1660 1.123928 GACGACCCATGGATCCTCTT 58.876 55.000 15.22 0.00 0.00 2.85
1380 1661 2.317040 GACGACCCATGGATCCTCTTA 58.683 52.381 15.22 0.00 0.00 2.10
1383 1664 2.965831 CGACCCATGGATCCTCTTAAGA 59.034 50.000 15.22 4.81 0.00 2.10
1385 1666 4.141711 CGACCCATGGATCCTCTTAAGAAA 60.142 45.833 15.22 0.00 0.00 2.52
1386 1667 5.372373 GACCCATGGATCCTCTTAAGAAAG 58.628 45.833 15.22 1.29 0.00 2.62
1395 1688 7.123697 TGGATCCTCTTAAGAAAGAACGACATA 59.876 37.037 14.23 0.00 41.19 2.29
1396 1689 7.650104 GGATCCTCTTAAGAAAGAACGACATAG 59.350 40.741 3.84 0.00 41.19 2.23
1398 1691 7.763356 TCCTCTTAAGAAAGAACGACATAGAG 58.237 38.462 6.63 0.00 41.19 2.43
1401 1694 8.294954 TCTTAAGAAAGAACGACATAGAGGAT 57.705 34.615 1.68 0.00 38.81 3.24
1429 1722 0.970937 TCACATGTCCGGAGACCTCC 60.971 60.000 3.06 5.99 42.81 4.30
1448 1741 4.082523 GGCCACGCTCTACAGCCA 62.083 66.667 0.00 0.00 43.56 4.75
1476 1769 4.200283 CACCTCGAGGAGCTCCGC 62.200 72.222 37.69 26.09 42.08 5.54
1526 1825 3.782443 GCCCCGGGACCTGTACAG 61.782 72.222 26.32 16.34 0.00 2.74
1541 1840 2.027192 TGTACAGTTTCAGCATCCCCTC 60.027 50.000 0.00 0.00 0.00 4.30
1552 1851 4.753662 TCCCCTCCCTGTCGTCGG 62.754 72.222 0.00 0.00 0.00 4.79
1593 1898 1.597854 CGTCAGCAAGTGCCTGGAA 60.598 57.895 0.00 0.00 43.38 3.53
1594 1899 0.957395 CGTCAGCAAGTGCCTGGAAT 60.957 55.000 0.00 0.00 43.38 3.01
1595 1900 0.524862 GTCAGCAAGTGCCTGGAATG 59.475 55.000 0.00 0.00 43.38 2.67
1598 1903 1.304381 GCAAGTGCCTGGAATGGGA 60.304 57.895 0.00 0.00 34.31 4.37
1602 1907 1.379044 GTGCCTGGAATGGGACTGG 60.379 63.158 0.00 0.00 43.77 4.00
1605 1910 1.609783 CCTGGAATGGGACTGGGAC 59.390 63.158 0.00 0.00 0.00 4.46
1606 1911 1.609783 CTGGAATGGGACTGGGACC 59.390 63.158 0.00 0.00 0.00 4.46
1608 1913 2.298661 GGAATGGGACTGGGACCGT 61.299 63.158 0.00 0.00 0.00 4.83
1609 1914 1.221021 GAATGGGACTGGGACCGTC 59.779 63.158 0.00 0.00 0.00 4.79
1610 1915 1.229529 AATGGGACTGGGACCGTCT 60.230 57.895 0.00 0.00 0.00 4.18
1612 1917 2.037527 GGGACTGGGACCGTCTCT 59.962 66.667 0.00 0.00 0.00 3.10
1613 1918 2.352032 GGGACTGGGACCGTCTCTG 61.352 68.421 3.84 3.84 0.00 3.35
1614 1919 2.574399 GACTGGGACCGTCTCTGC 59.426 66.667 5.25 0.00 0.00 4.26
1616 1921 3.775654 CTGGGACCGTCTCTGCCC 61.776 72.222 0.00 0.00 41.08 5.36
1619 1924 4.131088 GGACCGTCTCTGCCCGTC 62.131 72.222 0.00 0.00 0.00 4.79
1676 1981 3.702048 GGACCTACGGCTGCACCA 61.702 66.667 0.50 0.00 39.03 4.17
1706 2011 1.593750 CGCTGAGCATACTCCAGGC 60.594 63.158 4.88 0.00 42.74 4.85
1776 2081 3.964688 TCGAATTCAGATTACCTGCCCTA 59.035 43.478 6.22 0.00 42.62 3.53
1785 2090 1.327690 TACCTGCCCTACCTTCAGCG 61.328 60.000 0.00 0.00 0.00 5.18
1787 2092 1.153549 CTGCCCTACCTTCAGCGAC 60.154 63.158 0.00 0.00 0.00 5.19
1821 2126 2.722201 GCGGTCCATCCTTCTCCGT 61.722 63.158 0.00 0.00 42.62 4.69
1980 2291 4.429212 CCGCCGGACATGACACGA 62.429 66.667 5.05 0.00 0.00 4.35
2001 2312 4.564769 CGAGTAGATTTGAGCTTCCAAGTC 59.435 45.833 3.31 3.31 34.31 3.01
2052 2363 0.976641 TGTGCCGACTCTTCTGGAAT 59.023 50.000 0.00 0.00 0.00 3.01
2069 2380 8.665643 TTCTGGAATTTTGTTCGTAACTTCTA 57.334 30.769 0.00 0.00 0.00 2.10
2094 2405 1.068055 GCAAACACCATCAGCCTCAAG 60.068 52.381 0.00 0.00 0.00 3.02
2097 2408 2.191128 ACACCATCAGCCTCAAGTTC 57.809 50.000 0.00 0.00 0.00 3.01
2109 2420 2.874701 CCTCAAGTTCCAACTGTCACAG 59.125 50.000 2.22 2.22 39.66 3.66
2112 2423 4.191544 TCAAGTTCCAACTGTCACAGAAG 58.808 43.478 13.14 2.87 39.66 2.85
2130 2441 0.176680 AGGCATGTCTAGGCGACTTG 59.823 55.000 0.00 0.00 45.60 3.16
2141 2452 3.626028 AGGCGACTTGTGCTTTTAAAG 57.374 42.857 0.00 0.00 37.44 1.85
2160 2472 3.932545 AGCCTCGATTATCTGCTAGTG 57.067 47.619 0.00 0.00 0.00 2.74
2163 2475 3.832276 CCTCGATTATCTGCTAGTGCTC 58.168 50.000 0.00 0.00 40.48 4.26
2165 2477 3.222603 TCGATTATCTGCTAGTGCTCCA 58.777 45.455 0.00 0.00 40.48 3.86
2166 2478 3.636764 TCGATTATCTGCTAGTGCTCCAA 59.363 43.478 0.00 0.00 40.48 3.53
2199 2511 4.685165 TGTACGTAAACGCTCTTTTATGCA 59.315 37.500 0.00 0.00 44.43 3.96
2208 2520 3.728864 CGCTCTTTTATGCATGTTTCGCT 60.729 43.478 10.16 0.00 0.00 4.93
2210 2522 5.331902 GCTCTTTTATGCATGTTTCGCTTA 58.668 37.500 10.16 0.00 0.00 3.09
2212 2524 6.237306 GCTCTTTTATGCATGTTTCGCTTAAC 60.237 38.462 10.16 0.00 31.15 2.01
2215 2527 7.537306 TCTTTTATGCATGTTTCGCTTAACTTC 59.463 33.333 10.16 0.00 31.15 3.01
2217 2529 2.881513 TGCATGTTTCGCTTAACTTCCA 59.118 40.909 0.00 0.00 0.00 3.53
2219 2531 4.098416 GCATGTTTCGCTTAACTTCCATC 58.902 43.478 0.00 0.00 0.00 3.51
2226 2538 4.247258 TCGCTTAACTTCCATCGCTTTAA 58.753 39.130 0.00 0.00 0.00 1.52
2232 2544 3.809905 ACTTCCATCGCTTTAAGATCCC 58.190 45.455 0.00 0.00 0.00 3.85
2243 2555 4.759782 CTTTAAGATCCCGAGATGTGTGT 58.240 43.478 0.00 0.00 30.90 3.72
2247 2559 1.067821 GATCCCGAGATGTGTGTCTCC 59.932 57.143 0.00 0.00 41.24 3.71
2300 2612 9.875691 GGCCAAGATGACTAAATTTAAGAAATT 57.124 29.630 0.00 0.00 42.62 1.82
2336 2649 5.447846 CGCATTAGCAAACTTTATACACACG 59.552 40.000 0.00 0.00 42.27 4.49
2337 2650 5.737290 GCATTAGCAAACTTTATACACACGG 59.263 40.000 0.00 0.00 41.58 4.94
2338 2651 6.402766 GCATTAGCAAACTTTATACACACGGA 60.403 38.462 0.00 0.00 41.58 4.69
2349 2662 2.203437 ACACGGAGGCAAAACCCC 60.203 61.111 0.00 0.00 40.58 4.95
2357 2670 4.337060 GCAAAACCCCGCGTCACC 62.337 66.667 4.92 0.00 0.00 4.02
2358 2671 3.666253 CAAAACCCCGCGTCACCC 61.666 66.667 4.92 0.00 0.00 4.61
2379 2696 3.553511 CCGTGCATCAAGAAGTGTCTATC 59.446 47.826 0.00 0.00 32.16 2.08
2386 2703 2.237143 CAAGAAGTGTCTATCTGGGCCA 59.763 50.000 5.85 5.85 32.16 5.36
2390 2707 0.601311 GTGTCTATCTGGGCCATCGC 60.601 60.000 6.72 0.00 0.00 4.58
2391 2708 1.048160 TGTCTATCTGGGCCATCGCA 61.048 55.000 6.72 0.00 36.38 5.10
2423 2740 4.419280 CATTTGCGTAATGTAATGCCACA 58.581 39.130 3.81 0.00 39.05 4.17
2456 2773 3.969995 GCCTTTGGCCGTTACAAAA 57.030 47.368 0.00 0.00 44.06 2.44
2457 2774 1.493772 GCCTTTGGCCGTTACAAAAC 58.506 50.000 0.00 0.00 44.06 2.43
2458 2775 1.870580 GCCTTTGGCCGTTACAAAACC 60.871 52.381 0.00 0.00 44.06 3.27
2459 2776 1.684450 CCTTTGGCCGTTACAAAACCT 59.316 47.619 0.00 0.00 37.37 3.50
2460 2777 2.287970 CCTTTGGCCGTTACAAAACCTC 60.288 50.000 0.00 0.00 37.37 3.85
2461 2778 2.351706 TTGGCCGTTACAAAACCTCT 57.648 45.000 0.00 0.00 31.46 3.69
2462 2779 2.351706 TGGCCGTTACAAAACCTCTT 57.648 45.000 0.00 0.00 31.46 2.85
2463 2780 2.223745 TGGCCGTTACAAAACCTCTTC 58.776 47.619 0.00 0.00 31.46 2.87
2464 2781 2.223745 GGCCGTTACAAAACCTCTTCA 58.776 47.619 0.00 0.00 31.46 3.02
2465 2782 2.817844 GGCCGTTACAAAACCTCTTCAT 59.182 45.455 0.00 0.00 31.46 2.57
2466 2783 4.004982 GGCCGTTACAAAACCTCTTCATA 58.995 43.478 0.00 0.00 31.46 2.15
2467 2784 4.456566 GGCCGTTACAAAACCTCTTCATAA 59.543 41.667 0.00 0.00 31.46 1.90
2468 2785 5.124936 GGCCGTTACAAAACCTCTTCATAAT 59.875 40.000 0.00 0.00 31.46 1.28
2469 2786 6.349860 GGCCGTTACAAAACCTCTTCATAATT 60.350 38.462 0.00 0.00 31.46 1.40
2533 2850 0.603707 AGTGTCATCACCAACTGGCG 60.604 55.000 0.00 0.00 44.83 5.69
2555 2872 4.247380 CCTCTCATGGCGGCCCTC 62.247 72.222 17.97 0.00 0.00 4.30
2584 2901 3.185330 CTCGGATAGGAATCGCATGATG 58.815 50.000 0.00 0.00 34.24 3.07
2675 2992 7.361889 GAATGTCTCTCATGCCAACATATAG 57.638 40.000 0.00 0.00 36.81 1.31
2761 3082 5.459536 AGGAATCTCTTTGGTTTTCTTGC 57.540 39.130 0.00 0.00 0.00 4.01
2810 3133 3.942115 GGGAGTACCTCTGAATTCAAAGC 59.058 47.826 9.88 0.00 35.85 3.51
2835 3174 5.415221 ACTTCAATCTCTTCCTCGCTAAAG 58.585 41.667 0.00 0.00 0.00 1.85
2912 6159 8.849168 CACATCCTTGGTAATTTCATATGCTTA 58.151 33.333 0.00 0.00 0.00 3.09
2928 6176 8.324306 TCATATGCTTATATCTCCCCTTCTTTG 58.676 37.037 0.00 0.00 0.00 2.77
2949 6198 9.577110 TCTTTGAATATTAGCTTTTGATTGCAG 57.423 29.630 0.00 0.00 0.00 4.41
3281 6534 6.002082 AGTCGTAAAGCCCTTTAAGTCATTT 58.998 36.000 11.55 0.00 36.86 2.32
3290 6543 8.465273 AGCCCTTTAAGTCATTTATTATCACC 57.535 34.615 0.00 0.00 0.00 4.02
3292 6545 8.352942 GCCCTTTAAGTCATTTATTATCACCAG 58.647 37.037 0.00 0.00 0.00 4.00
3405 6658 5.337554 CAACCTTGATGTGCACATATTCAG 58.662 41.667 31.45 21.84 36.57 3.02
3426 6679 6.805713 TCAGCATATACATCGAACTTCTCAA 58.194 36.000 0.00 0.00 0.00 3.02
3636 6890 4.460382 CACTTCCTAGCAACATTGATTGGT 59.540 41.667 9.60 0.25 39.79 3.67
3670 6924 6.862209 TCACTATGACAAAACAAGCAAAAGT 58.138 32.000 0.00 0.00 0.00 2.66
3721 6976 9.061435 TGTTGTATGAAACTAATGACATCAACA 57.939 29.630 3.06 3.06 37.79 3.33
3764 7019 1.541147 CTTCTCGCATCAGCCCAAAAA 59.459 47.619 0.00 0.00 37.52 1.94
3828 7083 6.526674 CACTAAATAAATTTCGGTTGCAGGAC 59.473 38.462 0.00 0.00 0.00 3.85
4065 7321 6.647334 TCTTGTTGCATCTGAATAACCAAA 57.353 33.333 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.032956 TGCTTTGAGATTCATGCTTGATTT 57.967 33.333 2.75 0.00 30.95 2.17
254 257 4.746535 TCAAAGTGTCACAAGTGGAGTA 57.253 40.909 5.62 0.00 0.00 2.59
369 372 8.049721 TGGTTGTCACCCTTTTAAATGATTTTT 58.950 29.630 0.00 0.00 43.49 1.94
399 403 2.604914 CGATCCCATCAACTTCTGTTCG 59.395 50.000 0.00 0.00 33.52 3.95
413 417 5.887214 TTCTAAATGATTCTCCGATCCCA 57.113 39.130 0.00 0.00 0.00 4.37
420 424 8.924511 TGGTCCATATTTCTAAATGATTCTCC 57.075 34.615 0.00 0.00 0.00 3.71
437 717 5.223655 TCTTCTGTAATCCCATGGTCCATA 58.776 41.667 11.73 0.00 0.00 2.74
456 736 1.996191 GCTCCTGTGTCGTTGATCTTC 59.004 52.381 0.00 0.00 0.00 2.87
496 776 1.134159 GGCTGTTGGAGATGCTCTCAT 60.134 52.381 13.06 0.00 45.12 2.90
497 777 0.251354 GGCTGTTGGAGATGCTCTCA 59.749 55.000 13.06 0.00 45.12 3.27
498 778 0.809241 CGGCTGTTGGAGATGCTCTC 60.809 60.000 5.01 5.01 42.66 3.20
499 779 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
500 780 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
501 781 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
502 782 3.512516 GGCGGCTGTTGGAGATGC 61.513 66.667 0.00 0.00 0.00 3.91
503 783 2.825836 GGGCGGCTGTTGGAGATG 60.826 66.667 9.56 0.00 0.00 2.90
504 784 2.215451 ATTGGGCGGCTGTTGGAGAT 62.215 55.000 9.56 0.00 0.00 2.75
505 785 2.905996 ATTGGGCGGCTGTTGGAGA 61.906 57.895 9.56 0.00 0.00 3.71
506 786 2.361610 ATTGGGCGGCTGTTGGAG 60.362 61.111 9.56 0.00 0.00 3.86
507 787 2.676121 CATTGGGCGGCTGTTGGA 60.676 61.111 9.56 0.00 0.00 3.53
508 788 4.440127 GCATTGGGCGGCTGTTGG 62.440 66.667 9.56 0.00 0.00 3.77
536 816 5.068067 ACTTATGTGCTGTAAACCCGTTTTT 59.932 36.000 0.00 0.00 34.23 1.94
537 817 4.581409 ACTTATGTGCTGTAAACCCGTTTT 59.419 37.500 0.00 0.00 34.23 2.43
538 818 4.139038 ACTTATGTGCTGTAAACCCGTTT 58.861 39.130 0.00 0.00 36.63 3.60
539 819 3.746940 ACTTATGTGCTGTAAACCCGTT 58.253 40.909 0.00 0.00 0.00 4.44
540 820 3.412237 ACTTATGTGCTGTAAACCCGT 57.588 42.857 0.00 0.00 0.00 5.28
541 821 4.751060 TCTACTTATGTGCTGTAAACCCG 58.249 43.478 0.00 0.00 0.00 5.28
542 822 7.625828 AAATCTACTTATGTGCTGTAAACCC 57.374 36.000 0.00 0.00 0.00 4.11
566 846 4.612264 ACGTCTTCTAGTGCCCTAAAAA 57.388 40.909 0.00 0.00 0.00 1.94
567 847 4.612264 AACGTCTTCTAGTGCCCTAAAA 57.388 40.909 0.00 0.00 0.00 1.52
568 848 4.312443 CAAACGTCTTCTAGTGCCCTAAA 58.688 43.478 0.00 0.00 0.00 1.85
569 849 3.863400 GCAAACGTCTTCTAGTGCCCTAA 60.863 47.826 0.00 0.00 0.00 2.69
570 850 2.353406 GCAAACGTCTTCTAGTGCCCTA 60.353 50.000 0.00 0.00 0.00 3.53
571 851 1.608283 GCAAACGTCTTCTAGTGCCCT 60.608 52.381 0.00 0.00 0.00 5.19
572 852 0.796927 GCAAACGTCTTCTAGTGCCC 59.203 55.000 0.00 0.00 0.00 5.36
573 853 1.727335 GAGCAAACGTCTTCTAGTGCC 59.273 52.381 0.00 0.00 32.38 5.01
574 854 1.727335 GGAGCAAACGTCTTCTAGTGC 59.273 52.381 0.00 0.00 0.00 4.40
575 855 3.026630 TGGAGCAAACGTCTTCTAGTG 57.973 47.619 0.00 0.00 0.00 2.74
576 856 3.181469 TGTTGGAGCAAACGTCTTCTAGT 60.181 43.478 0.00 0.00 32.47 2.57
577 857 3.390135 TGTTGGAGCAAACGTCTTCTAG 58.610 45.455 0.00 0.00 32.47 2.43
578 858 3.462483 TGTTGGAGCAAACGTCTTCTA 57.538 42.857 0.00 0.00 32.47 2.10
579 859 2.325583 TGTTGGAGCAAACGTCTTCT 57.674 45.000 0.00 0.00 32.47 2.85
580 860 2.854805 GCTTGTTGGAGCAAACGTCTTC 60.855 50.000 0.00 0.00 42.25 2.87
581 861 1.065551 GCTTGTTGGAGCAAACGTCTT 59.934 47.619 0.00 0.00 42.25 3.01
582 862 0.663153 GCTTGTTGGAGCAAACGTCT 59.337 50.000 0.00 0.00 42.25 4.18
583 863 0.657368 CGCTTGTTGGAGCAAACGTC 60.657 55.000 0.00 0.00 42.83 4.34
584 864 1.355210 CGCTTGTTGGAGCAAACGT 59.645 52.632 0.00 0.00 42.83 3.99
585 865 2.010817 GCGCTTGTTGGAGCAAACG 61.011 57.895 0.00 0.00 42.83 3.60
586 866 0.936297 CAGCGCTTGTTGGAGCAAAC 60.936 55.000 7.50 0.00 42.83 2.93
587 867 1.359833 CAGCGCTTGTTGGAGCAAA 59.640 52.632 7.50 0.00 42.83 3.68
588 868 3.033184 CAGCGCTTGTTGGAGCAA 58.967 55.556 7.50 0.00 42.83 3.91
589 869 3.663176 GCAGCGCTTGTTGGAGCA 61.663 61.111 7.50 0.00 42.83 4.26
590 870 2.682256 TTTGCAGCGCTTGTTGGAGC 62.682 55.000 7.50 6.99 39.29 4.70
591 871 0.248990 TTTTGCAGCGCTTGTTGGAG 60.249 50.000 7.50 0.00 0.00 3.86
592 872 0.388659 ATTTTGCAGCGCTTGTTGGA 59.611 45.000 7.50 0.00 0.00 3.53
593 873 2.063156 TATTTTGCAGCGCTTGTTGG 57.937 45.000 7.50 0.00 0.00 3.77
594 874 3.628053 CATATTTTGCAGCGCTTGTTG 57.372 42.857 7.50 0.00 0.00 3.33
624 904 2.907897 GATTGGGACCGCTGGACTCG 62.908 65.000 1.50 0.00 0.00 4.18
625 905 1.153349 GATTGGGACCGCTGGACTC 60.153 63.158 1.50 0.00 0.00 3.36
626 906 1.488705 TTGATTGGGACCGCTGGACT 61.489 55.000 1.50 0.00 0.00 3.85
627 907 1.002624 TTGATTGGGACCGCTGGAC 60.003 57.895 1.50 0.00 0.00 4.02
628 908 1.299648 CTTGATTGGGACCGCTGGA 59.700 57.895 1.50 0.00 0.00 3.86
629 909 2.409870 GCTTGATTGGGACCGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
630 910 2.753966 CGCTTGATTGGGACCGCTG 61.754 63.158 0.00 0.00 0.00 5.18
631 911 2.436646 CGCTTGATTGGGACCGCT 60.437 61.111 0.00 0.00 0.00 5.52
632 912 3.508840 CCGCTTGATTGGGACCGC 61.509 66.667 0.00 0.00 0.00 5.68
633 913 2.046314 ACCGCTTGATTGGGACCG 60.046 61.111 0.00 0.00 0.00 4.79
634 914 0.744771 GAGACCGCTTGATTGGGACC 60.745 60.000 0.00 0.00 0.00 4.46
635 915 0.036388 TGAGACCGCTTGATTGGGAC 60.036 55.000 0.00 0.00 0.00 4.46
636 916 0.911769 ATGAGACCGCTTGATTGGGA 59.088 50.000 0.00 0.00 0.00 4.37
637 917 1.134280 AGATGAGACCGCTTGATTGGG 60.134 52.381 0.00 0.00 0.00 4.12
638 918 1.938577 CAGATGAGACCGCTTGATTGG 59.061 52.381 0.00 0.00 0.00 3.16
639 919 1.329906 GCAGATGAGACCGCTTGATTG 59.670 52.381 0.00 0.00 0.00 2.67
640 920 1.065926 TGCAGATGAGACCGCTTGATT 60.066 47.619 0.00 0.00 0.00 2.57
641 921 0.538584 TGCAGATGAGACCGCTTGAT 59.461 50.000 0.00 0.00 0.00 2.57
642 922 0.321346 TTGCAGATGAGACCGCTTGA 59.679 50.000 0.00 0.00 0.00 3.02
643 923 0.445436 GTTGCAGATGAGACCGCTTG 59.555 55.000 0.00 0.00 0.00 4.01
644 924 0.035317 TGTTGCAGATGAGACCGCTT 59.965 50.000 0.00 0.00 0.00 4.68
645 925 0.390866 CTGTTGCAGATGAGACCGCT 60.391 55.000 0.00 0.00 32.44 5.52
646 926 1.975363 GCTGTTGCAGATGAGACCGC 61.975 60.000 0.00 0.00 39.41 5.68
647 927 0.671472 TGCTGTTGCAGATGAGACCG 60.671 55.000 0.00 0.00 45.31 4.79
648 928 3.238232 TGCTGTTGCAGATGAGACC 57.762 52.632 0.00 0.00 45.31 3.85
658 938 2.195922 CTGGAAACTTTGTGCTGTTGC 58.804 47.619 0.00 0.00 40.20 4.17
659 939 2.195922 GCTGGAAACTTTGTGCTGTTG 58.804 47.619 0.00 0.00 0.00 3.33
660 940 1.202290 CGCTGGAAACTTTGTGCTGTT 60.202 47.619 0.00 0.00 0.00 3.16
661 941 0.381801 CGCTGGAAACTTTGTGCTGT 59.618 50.000 0.00 0.00 0.00 4.40
662 942 0.936297 GCGCTGGAAACTTTGTGCTG 60.936 55.000 0.00 0.00 33.71 4.41
663 943 1.360192 GCGCTGGAAACTTTGTGCT 59.640 52.632 0.00 0.00 33.71 4.40
664 944 2.010817 CGCGCTGGAAACTTTGTGC 61.011 57.895 5.56 0.00 0.00 4.57
665 945 2.010817 GCGCGCTGGAAACTTTGTG 61.011 57.895 26.67 0.00 0.00 3.33
666 946 2.331451 GCGCGCTGGAAACTTTGT 59.669 55.556 26.67 0.00 0.00 2.83
667 947 2.796617 CGCGCGCTGGAAACTTTG 60.797 61.111 30.48 5.07 0.00 2.77
668 948 3.276846 ACGCGCGCTGGAAACTTT 61.277 55.556 32.58 2.28 0.00 2.66
669 949 4.012895 CACGCGCGCTGGAAACTT 62.013 61.111 32.58 3.21 0.00 2.66
670 950 4.961511 TCACGCGCGCTGGAAACT 62.962 61.111 32.58 4.13 0.00 2.66
671 951 4.719616 GTCACGCGCGCTGGAAAC 62.720 66.667 32.58 16.53 0.00 2.78
683 963 0.734942 ATTTAGTGCGTCCGGTCACG 60.735 55.000 11.11 11.11 42.95 4.35
684 964 2.282701 TATTTAGTGCGTCCGGTCAC 57.717 50.000 0.00 8.71 0.00 3.67
685 965 2.816689 CATATTTAGTGCGTCCGGTCA 58.183 47.619 0.00 0.00 0.00 4.02
686 966 1.525619 GCATATTTAGTGCGTCCGGTC 59.474 52.381 0.00 0.00 32.29 4.79
687 967 1.138266 AGCATATTTAGTGCGTCCGGT 59.862 47.619 0.00 0.00 46.86 5.28
688 968 1.526887 CAGCATATTTAGTGCGTCCGG 59.473 52.381 0.00 0.00 46.86 5.14
689 969 1.070577 GCAGCATATTTAGTGCGTCCG 60.071 52.381 0.00 0.00 46.86 4.79
690 970 2.670401 GCAGCATATTTAGTGCGTCC 57.330 50.000 0.00 0.00 46.86 4.79
706 986 2.576287 TAAAAAGGCATCGCGCGCAG 62.576 55.000 32.61 23.08 43.84 5.18
707 987 2.188849 TTAAAAAGGCATCGCGCGCA 62.189 50.000 32.61 18.69 43.84 6.09
708 988 0.865639 ATTAAAAAGGCATCGCGCGC 60.866 50.000 27.95 23.91 43.84 6.86
709 989 0.839477 CATTAAAAAGGCATCGCGCG 59.161 50.000 26.76 26.76 43.84 6.86
710 990 0.572125 GCATTAAAAAGGCATCGCGC 59.428 50.000 0.00 0.00 41.28 6.86
711 991 0.839477 CGCATTAAAAAGGCATCGCG 59.161 50.000 0.00 0.00 35.14 5.87
712 992 0.572125 GCGCATTAAAAAGGCATCGC 59.428 50.000 0.30 0.00 34.61 4.58
713 993 0.839477 CGCGCATTAAAAAGGCATCG 59.161 50.000 8.75 0.00 0.00 3.84
714 994 0.572125 GCGCGCATTAAAAAGGCATC 59.428 50.000 29.10 0.00 0.00 3.91
715 995 1.139226 CGCGCGCATTAAAAAGGCAT 61.139 50.000 32.61 0.00 0.00 4.40
716 996 1.799519 CGCGCGCATTAAAAAGGCA 60.800 52.632 32.61 0.00 0.00 4.75
717 997 2.986809 CGCGCGCATTAAAAAGGC 59.013 55.556 32.61 0.00 0.00 4.35
718 998 2.986809 GCGCGCGCATTAAAAAGG 59.013 55.556 46.11 12.36 41.49 3.11
728 1008 0.782384 ATAACTAATGTAGCGCGCGC 59.218 50.000 45.10 45.10 42.33 6.86
729 1009 2.026507 GCTATAACTAATGTAGCGCGCG 59.973 50.000 28.44 28.44 38.70 6.86
730 1010 3.619751 GCTATAACTAATGTAGCGCGC 57.380 47.619 26.66 26.66 38.70 6.86
734 1014 2.026507 CGCGCGCTATAACTAATGTAGC 59.973 50.000 30.48 0.00 43.26 3.58
735 1015 2.026507 GCGCGCGCTATAACTAATGTAG 59.973 50.000 44.38 9.08 38.26 2.74
736 1016 1.980844 GCGCGCGCTATAACTAATGTA 59.019 47.619 44.38 0.00 38.26 2.29
737 1017 0.782384 GCGCGCGCTATAACTAATGT 59.218 50.000 44.38 0.00 38.26 2.71
738 1018 3.545308 GCGCGCGCTATAACTAATG 57.455 52.632 44.38 10.35 38.26 1.90
749 1029 0.782384 ATAACTAATGTAGCGCGCGC 59.218 50.000 45.10 45.10 42.33 6.86
750 1030 2.026507 GCTATAACTAATGTAGCGCGCG 59.973 50.000 28.44 28.44 38.70 6.86
751 1031 3.619751 GCTATAACTAATGTAGCGCGC 57.380 47.619 26.66 26.66 38.70 6.86
755 1035 2.026507 CGCGCGCTATAACTAATGTAGC 59.973 50.000 30.48 0.00 43.26 3.58
756 1036 2.026507 GCGCGCGCTATAACTAATGTAG 59.973 50.000 44.38 9.08 38.26 2.74
757 1037 1.980844 GCGCGCGCTATAACTAATGTA 59.019 47.619 44.38 0.00 38.26 2.29
758 1038 0.782384 GCGCGCGCTATAACTAATGT 59.218 50.000 44.38 0.00 38.26 2.71
759 1039 3.545308 GCGCGCGCTATAACTAATG 57.455 52.632 44.38 10.35 38.26 1.90
776 1056 0.803380 CCAGCAGCCGCATAAAAAGC 60.803 55.000 0.00 0.00 42.27 3.51
777 1057 0.810648 TCCAGCAGCCGCATAAAAAG 59.189 50.000 0.00 0.00 42.27 2.27
778 1058 0.810648 CTCCAGCAGCCGCATAAAAA 59.189 50.000 0.00 0.00 42.27 1.94
779 1059 0.035534 TCTCCAGCAGCCGCATAAAA 60.036 50.000 0.00 0.00 42.27 1.52
780 1060 0.744414 GTCTCCAGCAGCCGCATAAA 60.744 55.000 0.00 0.00 42.27 1.40
781 1061 1.153369 GTCTCCAGCAGCCGCATAA 60.153 57.895 0.00 0.00 42.27 1.90
782 1062 2.021068 GAGTCTCCAGCAGCCGCATA 62.021 60.000 0.00 0.00 42.27 3.14
783 1063 3.382803 GAGTCTCCAGCAGCCGCAT 62.383 63.158 0.00 0.00 42.27 4.73
784 1064 4.074526 GAGTCTCCAGCAGCCGCA 62.075 66.667 0.00 0.00 42.27 5.69
785 1065 4.828925 GGAGTCTCCAGCAGCCGC 62.829 72.222 14.46 0.00 36.28 6.53
786 1066 3.385384 TGGAGTCTCCAGCAGCCG 61.385 66.667 18.15 0.00 42.67 5.52
792 1072 5.584886 CGTACCCGATTTGGAGTCTCCAG 62.585 56.522 20.86 11.27 41.74 3.86
793 1073 1.829222 GTACCCGATTTGGAGTCTCCA 59.171 52.381 18.15 18.15 46.61 3.86
794 1074 1.202382 CGTACCCGATTTGGAGTCTCC 60.202 57.143 12.40 12.40 42.00 3.71
795 1075 1.801765 GCGTACCCGATTTGGAGTCTC 60.802 57.143 0.00 0.00 42.00 3.36
796 1076 0.175073 GCGTACCCGATTTGGAGTCT 59.825 55.000 0.00 0.00 42.00 3.24
797 1077 1.143969 CGCGTACCCGATTTGGAGTC 61.144 60.000 0.00 0.00 42.00 3.36
798 1078 1.153706 CGCGTACCCGATTTGGAGT 60.154 57.895 0.00 0.00 42.00 3.85
799 1079 2.522638 GCGCGTACCCGATTTGGAG 61.523 63.158 8.43 0.00 42.00 3.86
800 1080 2.509786 GCGCGTACCCGATTTGGA 60.510 61.111 8.43 0.00 42.00 3.53
801 1081 3.920553 CGCGCGTACCCGATTTGG 61.921 66.667 24.19 0.00 35.63 3.28
802 1082 4.568876 GCGCGCGTACCCGATTTG 62.569 66.667 32.35 0.00 35.63 2.32
803 1083 2.887463 TTAGCGCGCGTACCCGATTT 62.887 55.000 32.35 6.40 35.63 2.17
804 1084 2.887463 TTTAGCGCGCGTACCCGATT 62.887 55.000 32.35 7.25 35.63 3.34
805 1085 2.887463 TTTTAGCGCGCGTACCCGAT 62.887 55.000 32.35 8.09 35.63 4.18
806 1086 3.623486 TTTTAGCGCGCGTACCCGA 62.623 57.895 32.35 7.85 35.63 5.14
807 1087 3.134141 CTTTTAGCGCGCGTACCCG 62.134 63.158 32.35 11.95 37.07 5.28
808 1088 2.699212 CTTTTAGCGCGCGTACCC 59.301 61.111 32.35 14.78 0.00 3.69
809 1089 2.020969 GCTTTTAGCGCGCGTACC 59.979 61.111 32.35 15.19 0.00 3.34
810 1090 1.295930 CTGCTTTTAGCGCGCGTAC 60.296 57.895 32.35 16.02 46.26 3.67
811 1091 1.680105 GACTGCTTTTAGCGCGCGTA 61.680 55.000 32.35 18.91 46.26 4.42
812 1092 3.011760 GACTGCTTTTAGCGCGCGT 62.012 57.895 32.35 20.00 46.26 6.01
813 1093 2.227968 AAGACTGCTTTTAGCGCGCG 62.228 55.000 28.44 28.44 46.26 6.86
814 1094 0.110192 AAAGACTGCTTTTAGCGCGC 60.110 50.000 26.66 26.66 46.26 6.86
815 1095 3.658351 ATAAAGACTGCTTTTAGCGCG 57.342 42.857 0.00 0.00 46.26 6.86
816 1096 4.550255 CGGTATAAAGACTGCTTTTAGCGC 60.550 45.833 0.00 0.00 46.26 5.92
817 1097 4.550255 GCGGTATAAAGACTGCTTTTAGCG 60.550 45.833 17.35 17.35 46.26 4.26
818 1098 4.834234 GCGGTATAAAGACTGCTTTTAGC 58.166 43.478 1.35 0.00 46.38 3.09
825 1105 1.192534 GATGCGCGGTATAAAGACTGC 59.807 52.381 8.83 0.00 46.41 4.40
826 1106 1.452025 CGATGCGCGGTATAAAGACTG 59.548 52.381 8.83 0.00 36.03 3.51
827 1107 1.767289 CGATGCGCGGTATAAAGACT 58.233 50.000 8.83 0.00 36.03 3.24
828 1108 0.161024 GCGATGCGCGGTATAAAGAC 59.839 55.000 8.83 0.00 44.55 3.01
829 1109 2.513159 GCGATGCGCGGTATAAAGA 58.487 52.632 8.83 0.00 44.55 2.52
846 1126 7.219917 CATCTCTAACAGAAGCGCTATATAAGC 59.780 40.741 12.05 2.56 40.52 3.09
847 1127 7.219917 GCATCTCTAACAGAAGCGCTATATAAG 59.780 40.741 12.05 4.72 36.17 1.73
848 1128 7.030165 GCATCTCTAACAGAAGCGCTATATAA 58.970 38.462 12.05 0.00 36.17 0.98
849 1129 6.556212 GCATCTCTAACAGAAGCGCTATATA 58.444 40.000 12.05 0.00 36.17 0.86
850 1130 5.406649 GCATCTCTAACAGAAGCGCTATAT 58.593 41.667 12.05 0.00 36.17 0.86
851 1131 4.799678 GCATCTCTAACAGAAGCGCTATA 58.200 43.478 12.05 0.00 36.17 1.31
852 1132 3.648009 GCATCTCTAACAGAAGCGCTAT 58.352 45.455 12.05 0.00 36.17 2.97
853 1133 3.085443 GCATCTCTAACAGAAGCGCTA 57.915 47.619 12.05 0.00 36.17 4.26
854 1134 1.933247 GCATCTCTAACAGAAGCGCT 58.067 50.000 2.64 2.64 36.17 5.92
861 1141 7.140705 CAGAAGTCTGATAGCATCTCTAACAG 58.859 42.308 1.88 3.69 46.59 3.16
862 1142 7.036996 CAGAAGTCTGATAGCATCTCTAACA 57.963 40.000 1.88 0.00 46.59 2.41
966 1246 7.039993 GGCCTTTTGTGGAACCGATTTATATAT 60.040 37.037 0.00 0.00 34.36 0.86
972 1252 1.343142 GGCCTTTTGTGGAACCGATTT 59.657 47.619 0.00 0.00 34.36 2.17
973 1253 0.966179 GGCCTTTTGTGGAACCGATT 59.034 50.000 0.00 0.00 34.36 3.34
974 1254 0.898326 GGGCCTTTTGTGGAACCGAT 60.898 55.000 0.84 0.00 34.36 4.18
975 1255 1.529713 GGGCCTTTTGTGGAACCGA 60.530 57.895 0.84 0.00 34.36 4.69
976 1256 2.914908 CGGGCCTTTTGTGGAACCG 61.915 63.158 0.84 0.00 40.66 4.44
977 1257 2.570284 CCGGGCCTTTTGTGGAACC 61.570 63.158 0.84 0.00 34.36 3.62
978 1258 1.396607 AACCGGGCCTTTTGTGGAAC 61.397 55.000 6.32 0.00 37.35 3.62
979 1259 1.075896 AACCGGGCCTTTTGTGGAA 60.076 52.632 6.32 0.00 0.00 3.53
980 1260 1.529713 GAACCGGGCCTTTTGTGGA 60.530 57.895 6.32 0.00 0.00 4.02
981 1261 2.570284 GGAACCGGGCCTTTTGTGG 61.570 63.158 6.32 0.00 0.00 4.17
982 1262 1.830408 TGGAACCGGGCCTTTTGTG 60.830 57.895 6.32 0.00 0.00 3.33
983 1263 1.830847 GTGGAACCGGGCCTTTTGT 60.831 57.895 6.32 0.00 0.00 2.83
984 1264 1.805428 CTGTGGAACCGGGCCTTTTG 61.805 60.000 6.32 0.00 34.36 2.44
985 1265 1.530655 CTGTGGAACCGGGCCTTTT 60.531 57.895 6.32 0.00 34.36 2.27
986 1266 2.002018 TTCTGTGGAACCGGGCCTTT 62.002 55.000 6.32 0.00 34.36 3.11
987 1267 2.457323 TTCTGTGGAACCGGGCCTT 61.457 57.895 6.32 0.00 34.36 4.35
988 1268 2.852075 TTCTGTGGAACCGGGCCT 60.852 61.111 6.32 0.00 34.36 5.19
989 1269 2.671963 GTTCTGTGGAACCGGGCC 60.672 66.667 6.32 7.66 44.24 5.80
996 1276 4.530710 AGCTACGTATTGTTCTGTGGAA 57.469 40.909 0.00 0.00 0.00 3.53
997 1277 4.945543 TCTAGCTACGTATTGTTCTGTGGA 59.054 41.667 0.00 0.00 0.00 4.02
998 1278 5.244785 TCTAGCTACGTATTGTTCTGTGG 57.755 43.478 0.00 0.00 0.00 4.17
999 1279 6.552629 TCTTCTAGCTACGTATTGTTCTGTG 58.447 40.000 0.00 0.00 0.00 3.66
1000 1280 6.598457 TCTCTTCTAGCTACGTATTGTTCTGT 59.402 38.462 0.00 0.00 0.00 3.41
1001 1281 7.017498 TCTCTTCTAGCTACGTATTGTTCTG 57.983 40.000 0.00 0.00 0.00 3.02
1002 1282 7.337436 ACTTCTCTTCTAGCTACGTATTGTTCT 59.663 37.037 0.00 0.00 0.00 3.01
1003 1283 7.474190 ACTTCTCTTCTAGCTACGTATTGTTC 58.526 38.462 0.00 0.00 0.00 3.18
1004 1284 7.393841 ACTTCTCTTCTAGCTACGTATTGTT 57.606 36.000 0.00 0.00 0.00 2.83
1005 1285 7.251994 CAACTTCTCTTCTAGCTACGTATTGT 58.748 38.462 0.00 0.00 0.00 2.71
1006 1286 6.693545 CCAACTTCTCTTCTAGCTACGTATTG 59.306 42.308 0.00 0.00 0.00 1.90
1007 1287 6.680872 GCCAACTTCTCTTCTAGCTACGTATT 60.681 42.308 0.00 0.00 0.00 1.89
1008 1288 5.221087 GCCAACTTCTCTTCTAGCTACGTAT 60.221 44.000 0.00 0.00 0.00 3.06
1009 1289 4.096081 GCCAACTTCTCTTCTAGCTACGTA 59.904 45.833 0.00 0.00 0.00 3.57
1010 1290 3.119424 GCCAACTTCTCTTCTAGCTACGT 60.119 47.826 0.00 0.00 0.00 3.57
1011 1291 3.440228 GCCAACTTCTCTTCTAGCTACG 58.560 50.000 0.00 0.00 0.00 3.51
1012 1292 3.119424 ACGCCAACTTCTCTTCTAGCTAC 60.119 47.826 0.00 0.00 0.00 3.58
1013 1293 3.090037 ACGCCAACTTCTCTTCTAGCTA 58.910 45.455 0.00 0.00 0.00 3.32
1014 1294 1.896465 ACGCCAACTTCTCTTCTAGCT 59.104 47.619 0.00 0.00 0.00 3.32
1015 1295 2.371910 ACGCCAACTTCTCTTCTAGC 57.628 50.000 0.00 0.00 0.00 3.42
1016 1296 2.413453 GCAACGCCAACTTCTCTTCTAG 59.587 50.000 0.00 0.00 0.00 2.43
1017 1297 2.037251 AGCAACGCCAACTTCTCTTCTA 59.963 45.455 0.00 0.00 0.00 2.10
1018 1298 1.202698 AGCAACGCCAACTTCTCTTCT 60.203 47.619 0.00 0.00 0.00 2.85
1019 1299 1.230324 AGCAACGCCAACTTCTCTTC 58.770 50.000 0.00 0.00 0.00 2.87
1020 1300 1.604278 GAAGCAACGCCAACTTCTCTT 59.396 47.619 0.00 0.00 37.44 2.85
1021 1301 1.202698 AGAAGCAACGCCAACTTCTCT 60.203 47.619 5.14 0.00 45.32 3.10
1022 1302 1.069636 CAGAAGCAACGCCAACTTCTC 60.070 52.381 7.41 0.00 45.32 2.87
1023 1303 3.403936 AGAAGCAACGCCAACTTCT 57.596 47.368 5.14 5.14 44.03 2.85
1024 1304 0.661483 GCAGAAGCAACGCCAACTTC 60.661 55.000 0.00 0.00 41.58 3.01
1025 1305 1.103398 AGCAGAAGCAACGCCAACTT 61.103 50.000 0.00 0.00 45.49 2.66
1026 1306 1.103398 AAGCAGAAGCAACGCCAACT 61.103 50.000 0.00 0.00 45.49 3.16
1027 1307 0.936297 CAAGCAGAAGCAACGCCAAC 60.936 55.000 0.00 0.00 45.49 3.77
1028 1308 1.359833 CAAGCAGAAGCAACGCCAA 59.640 52.632 0.00 0.00 45.49 4.52
1029 1309 2.554636 CCAAGCAGAAGCAACGCCA 61.555 57.895 0.00 0.00 45.49 5.69
1030 1310 2.256461 CCAAGCAGAAGCAACGCC 59.744 61.111 0.00 0.00 45.49 5.68
1031 1311 2.429739 GCCAAGCAGAAGCAACGC 60.430 61.111 0.00 0.00 45.49 4.84
1032 1312 2.127118 CGCCAAGCAGAAGCAACG 60.127 61.111 0.00 0.00 45.49 4.10
1063 1343 2.405805 CGGCCATTGTTGATCGGCA 61.406 57.895 2.24 0.00 46.75 5.69
1065 1345 3.110139 CCGGCCATTGTTGATCGG 58.890 61.111 2.24 0.00 34.01 4.18
1092 1373 3.275088 TCGGAGAGGTTCGACAGC 58.725 61.111 0.00 0.00 0.00 4.40
1098 1379 1.507174 CAGGTCGTCGGAGAGGTTC 59.493 63.158 0.00 0.00 43.64 3.62
1105 1386 3.129502 CCGTAGCAGGTCGTCGGA 61.130 66.667 0.00 0.00 43.22 4.55
1255 1536 1.225475 CAATGACGTCGCGCTTGTC 60.225 57.895 11.62 11.12 0.00 3.18
1256 1537 1.954146 ACAATGACGTCGCGCTTGT 60.954 52.632 11.62 14.05 0.00 3.16
1264 1545 1.296145 CATCGCGCACAATGACGTC 60.296 57.895 9.11 9.11 0.00 4.34
1281 1562 3.118454 GCGAGCGCTTTACTGGCA 61.118 61.111 13.26 0.00 38.58 4.92
1318 1599 1.373246 TGAACTTCGTTACGGGGCG 60.373 57.895 4.53 0.00 0.00 6.13
1319 1600 1.293963 GGTGAACTTCGTTACGGGGC 61.294 60.000 4.53 0.00 0.00 5.80
1342 1623 0.679002 TCCTCTCCTTCCACGTACCG 60.679 60.000 0.00 0.00 0.00 4.02
1373 1654 7.148052 CCTCTATGTCGTTCTTTCTTAAGAGGA 60.148 40.741 5.12 5.79 41.25 3.71
1375 1656 7.763356 TCCTCTATGTCGTTCTTTCTTAAGAG 58.237 38.462 5.12 0.00 41.25 2.85
1379 1660 6.273825 GCATCCTCTATGTCGTTCTTTCTTA 58.726 40.000 0.00 0.00 37.93 2.10
1380 1661 5.112686 GCATCCTCTATGTCGTTCTTTCTT 58.887 41.667 0.00 0.00 37.93 2.52
1383 1664 3.130516 TCGCATCCTCTATGTCGTTCTTT 59.869 43.478 0.00 0.00 37.93 2.52
1385 1666 2.298610 TCGCATCCTCTATGTCGTTCT 58.701 47.619 0.00 0.00 37.93 3.01
1386 1667 2.776312 TCGCATCCTCTATGTCGTTC 57.224 50.000 0.00 0.00 37.93 3.95
1401 1694 1.360931 CGGACATGTGATGCTTCGCA 61.361 55.000 17.04 17.04 45.86 5.10
1410 1703 0.970937 GGAGGTCTCCGGACATGTGA 60.971 60.000 1.15 0.00 43.77 3.58
1411 1704 1.517832 GGAGGTCTCCGGACATGTG 59.482 63.158 1.15 0.00 43.77 3.21
1476 1769 2.496817 CCGAAGAAGAGCCCGAGG 59.503 66.667 0.00 0.00 0.00 4.63
1509 1802 3.782443 CTGTACAGGTCCCGGGGC 61.782 72.222 23.50 21.70 0.00 5.80
1513 1806 1.939838 GCTGAAACTGTACAGGTCCCG 60.940 57.143 26.12 5.97 35.05 5.14
1526 1825 0.394899 CAGGGAGGGGATGCTGAAAC 60.395 60.000 0.00 0.00 0.00 2.78
1576 1875 0.524862 CATTCCAGGCACTTGCTGAC 59.475 55.000 0.38 0.00 41.70 3.51
1588 1887 1.609783 GGTCCCAGTCCCATTCCAG 59.390 63.158 0.00 0.00 0.00 3.86
1593 1898 1.686110 GAGACGGTCCCAGTCCCAT 60.686 63.158 4.14 0.00 39.31 4.00
1594 1899 2.283676 GAGACGGTCCCAGTCCCA 60.284 66.667 4.14 0.00 39.31 4.37
1595 1900 2.037527 AGAGACGGTCCCAGTCCC 59.962 66.667 4.14 0.00 39.31 4.46
1598 1903 2.997897 GGCAGAGACGGTCCCAGT 60.998 66.667 4.14 0.00 0.00 4.00
1602 1907 4.131088 GACGGGCAGAGACGGTCC 62.131 72.222 4.14 0.00 35.30 4.46
1692 1997 1.068250 GACGGCCTGGAGTATGCTC 59.932 63.158 0.00 1.56 40.93 4.26
1693 1998 1.050988 ATGACGGCCTGGAGTATGCT 61.051 55.000 0.00 0.00 0.00 3.79
1694 1999 0.601311 GATGACGGCCTGGAGTATGC 60.601 60.000 0.00 0.00 0.00 3.14
1695 2000 0.319040 CGATGACGGCCTGGAGTATG 60.319 60.000 0.00 0.00 35.72 2.39
1734 2039 2.202544 CCGTCGAGCTGCAGAGTC 60.203 66.667 20.43 12.20 0.00 3.36
1821 2126 2.829384 GGCTGTGACCTTGGGGACA 61.829 63.158 0.00 0.00 35.12 4.02
1933 2238 2.430921 CGACAGTGACCGGACAGC 60.431 66.667 9.46 3.22 0.00 4.40
1980 2291 4.323868 GGGACTTGGAAGCTCAAATCTACT 60.324 45.833 0.00 0.00 0.00 2.57
2001 2312 2.748605 GTATCAACTCGAGCAGATGGG 58.251 52.381 23.16 4.01 0.00 4.00
2052 2363 4.025813 GCACCGTAGAAGTTACGAACAAAA 60.026 41.667 8.17 0.00 42.94 2.44
2094 2405 1.604278 GCCTTCTGTGACAGTTGGAAC 59.396 52.381 22.97 8.71 32.61 3.62
2097 2408 1.538512 CATGCCTTCTGTGACAGTTGG 59.461 52.381 12.93 15.67 32.61 3.77
2141 2452 2.029470 AGCACTAGCAGATAATCGAGGC 60.029 50.000 0.00 0.00 45.49 4.70
2142 2453 3.366883 GGAGCACTAGCAGATAATCGAGG 60.367 52.174 0.00 0.00 45.49 4.63
2163 2475 8.428028 GCGTTTACGTACAAATGCTTTGTTGG 62.428 42.308 17.00 11.89 45.45 3.77
2165 2477 4.438471 GCGTTTACGTACAAATGCTTTGTT 59.562 37.500 17.00 5.21 45.45 2.83
2166 2478 3.969981 GCGTTTACGTACAAATGCTTTGT 59.030 39.130 17.00 15.40 46.56 2.83
2178 2490 5.349270 ACATGCATAAAAGAGCGTTTACGTA 59.651 36.000 0.00 0.00 42.22 3.57
2199 2511 3.181510 GCGATGGAAGTTAAGCGAAACAT 60.182 43.478 6.93 0.00 0.00 2.71
2208 2520 5.820947 GGGATCTTAAAGCGATGGAAGTTAA 59.179 40.000 0.00 0.00 0.00 2.01
2210 2522 4.200092 GGGATCTTAAAGCGATGGAAGTT 58.800 43.478 0.00 0.00 0.00 2.66
2212 2524 2.802816 CGGGATCTTAAAGCGATGGAAG 59.197 50.000 0.00 0.00 0.00 3.46
2215 2527 2.035961 TCTCGGGATCTTAAAGCGATGG 59.964 50.000 0.00 0.00 0.00 3.51
2217 2529 3.322254 ACATCTCGGGATCTTAAAGCGAT 59.678 43.478 0.00 0.00 0.00 4.58
2219 2531 2.797156 CACATCTCGGGATCTTAAAGCG 59.203 50.000 0.00 0.00 0.00 4.68
2226 2538 2.028130 GAGACACACATCTCGGGATCT 58.972 52.381 0.00 0.00 36.05 2.75
2232 2544 3.653344 TGAAAAGGAGACACACATCTCG 58.347 45.455 0.00 0.00 45.27 4.04
2300 2612 1.665679 GCTAATGCGCAGTCAGCTTAA 59.334 47.619 25.07 4.04 42.61 1.85
2319 2632 3.425758 GCCTCCGTGTGTATAAAGTTTGC 60.426 47.826 0.00 0.00 0.00 3.68
2331 2644 2.561037 GGGGTTTTGCCTCCGTGTG 61.561 63.158 0.00 0.00 37.43 3.82
2337 2650 3.733960 GACGCGGGGTTTTGCCTC 61.734 66.667 12.47 0.00 37.43 4.70
2338 2651 4.572571 TGACGCGGGGTTTTGCCT 62.573 61.111 12.47 0.00 37.43 4.75
2357 2670 1.800805 AGACACTTCTTGATGCACGG 58.199 50.000 0.00 0.00 0.00 4.94
2358 2671 4.267214 CAGATAGACACTTCTTGATGCACG 59.733 45.833 0.00 0.00 32.75 5.34
2362 2675 4.125703 GCCCAGATAGACACTTCTTGATG 58.874 47.826 0.00 0.00 32.75 3.07
2386 2703 2.216750 AAATGCTTGGCGCTTGCGAT 62.217 50.000 19.55 0.00 40.46 4.58
2390 2707 2.722731 CGCAAATGCTTGGCGCTTG 61.723 57.895 7.64 2.74 40.11 4.01
2391 2708 1.861542 TACGCAAATGCTTGGCGCTT 61.862 50.000 7.64 0.00 40.11 4.68
2411 2728 7.466746 AACAATTACTCTTGTGGCATTACAT 57.533 32.000 0.00 0.00 39.25 2.29
2466 2783 9.628746 GCAAAAGATTTGCCATTTTCATTAATT 57.371 25.926 15.12 0.00 39.38 1.40
2480 2797 5.671742 TTTAAGCAAGGCAAAAGATTTGC 57.328 34.783 17.18 17.18 44.63 3.68
2507 2824 3.389329 AGTTGGTGATGACACTCACTCTT 59.611 43.478 13.91 1.55 44.05 2.85
2530 2847 2.190578 CCATGAGAGGAACCCGCC 59.809 66.667 0.00 0.00 0.00 6.13
2533 2850 2.190578 CCGCCATGAGAGGAACCC 59.809 66.667 0.00 0.00 0.00 4.11
2555 2872 1.456196 TTCCTATCCGAGCCAGAGCG 61.456 60.000 0.00 0.00 46.67 5.03
2584 2901 0.811281 AGTTGCAGAAATAAGGCGGC 59.189 50.000 0.00 0.00 0.00 6.53
2639 2956 7.683704 GCATGAGAGACATTCCTATTGCAAAAT 60.684 37.037 1.71 0.00 37.07 1.82
2648 2965 3.519107 TGTTGGCATGAGAGACATTCCTA 59.481 43.478 0.00 0.00 41.62 2.94
2653 2970 6.676990 TCTATATGTTGGCATGAGAGACAT 57.323 37.500 0.00 5.64 40.17 3.06
2675 2992 4.155462 ACACAACTTCATCAGATGCACATC 59.845 41.667 5.41 2.28 38.09 3.06
2761 3082 2.403259 TGTGTTATGTGTGCTCACTCG 58.597 47.619 18.85 0.00 44.14 4.18
2810 3133 3.594134 AGCGAGGAAGAGATTGAAGTTG 58.406 45.455 0.00 0.00 0.00 3.16
2865 6112 5.762711 TGTGTTGATTGATCGAGAAAAAGGA 59.237 36.000 0.00 0.00 0.00 3.36
2875 6122 3.691118 ACCAAGGATGTGTTGATTGATCG 59.309 43.478 0.00 0.00 0.00 3.69
2912 6159 9.121806 AGCTAATATTCAAAGAAGGGGAGATAT 57.878 33.333 0.00 0.00 0.00 1.63
2916 6163 7.888250 AAAGCTAATATTCAAAGAAGGGGAG 57.112 36.000 0.00 0.00 0.00 4.30
2928 6176 9.956720 ATGTACTGCAATCAAAAGCTAATATTC 57.043 29.630 0.00 0.00 0.00 1.75
2936 6185 5.464168 ACAAGATGTACTGCAATCAAAAGC 58.536 37.500 0.00 0.00 0.00 3.51
2999 6248 8.587608 TGGAGAAGCAATTTCAACAAATCTATT 58.412 29.630 0.00 0.00 38.31 1.73
3008 6257 5.633830 TGAGATGGAGAAGCAATTTCAAC 57.366 39.130 0.00 0.00 38.31 3.18
3103 6352 9.791801 TGTTAGCCAATATGATAATGCTCTTTA 57.208 29.630 0.00 0.00 0.00 1.85
3281 6534 6.143206 TGATCTTGGACTCCTGGTGATAATA 58.857 40.000 2.23 0.00 0.00 0.98
3290 6543 6.824553 TGAGAAATATGATCTTGGACTCCTG 58.175 40.000 0.00 0.00 0.00 3.86
3292 6545 6.204495 GCTTGAGAAATATGATCTTGGACTCC 59.796 42.308 0.00 0.00 0.00 3.85
3405 6658 8.749841 ATACTTGAGAAGTTCGATGTATATGC 57.250 34.615 11.53 0.00 42.81 3.14
3612 6866 4.701651 CCAATCAATGTTGCTAGGAAGTGA 59.298 41.667 0.00 2.27 0.00 3.41
3620 6874 5.887035 TCATCATGACCAATCAATGTTGCTA 59.113 36.000 0.00 0.00 38.69 3.49
3636 6890 8.564509 TGTTTTGTCATAGTGAATCATCATGA 57.435 30.769 0.00 0.00 38.01 3.07
3730 6985 7.215085 TGATGCGAGAAGTAGAGTAGTGTATA 58.785 38.462 0.00 0.00 0.00 1.47
3975 7231 6.042781 TGGGCTGGAATATAAGTAAACTCGAT 59.957 38.462 0.00 0.00 0.00 3.59
3978 7234 7.719633 TGATTGGGCTGGAATATAAGTAAACTC 59.280 37.037 0.00 0.00 0.00 3.01
3987 7243 2.715880 TGGCTGATTGGGCTGGAATATA 59.284 45.455 0.00 0.00 0.00 0.86
4091 7347 2.855180 TCGACGGTCGTTTTAGATCAC 58.145 47.619 27.53 0.00 41.35 3.06
4102 7358 0.989890 GGTTCATCTTTCGACGGTCG 59.010 55.000 23.73 23.73 42.10 4.79
4106 7362 1.067142 TGGGAGGTTCATCTTTCGACG 60.067 52.381 0.00 0.00 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.