Multiple sequence alignment - TraesCS7D01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G373400 chr7D 100.000 5141 0 0 1 5141 483925201 483920061 0.000000e+00 9494.0
1 TraesCS7D01G373400 chr7D 91.818 330 24 3 3446 3774 24923892 24924219 1.690000e-124 457.0
2 TraesCS7D01G373400 chr7D 82.051 78 12 2 1674 1750 11767776 11767852 1.190000e-06 65.8
3 TraesCS7D01G373400 chr7D 82.051 78 12 2 1674 1750 11806365 11806441 1.190000e-06 65.8
4 TraesCS7D01G373400 chr7A 95.791 1378 51 5 3770 5141 550300722 550299346 0.000000e+00 2217.0
5 TraesCS7D01G373400 chr7A 95.135 1336 55 5 2118 3449 550302048 550300719 0.000000e+00 2098.0
6 TraesCS7D01G373400 chr7A 94.858 914 33 3 636 1549 550304032 550303133 0.000000e+00 1415.0
7 TraesCS7D01G373400 chr7A 89.884 346 33 2 3439 3782 473078149 473077804 1.310000e-120 444.0
8 TraesCS7D01G373400 chr7A 94.167 240 10 2 1758 1996 550302626 550302390 3.780000e-96 363.0
9 TraesCS7D01G373400 chr7A 94.286 140 8 0 1545 1684 550302868 550302729 1.120000e-51 215.0
10 TraesCS7D01G373400 chr7A 89.831 59 5 1 1695 1753 20442045 20441988 1.990000e-09 75.0
11 TraesCS7D01G373400 chr7A 85.075 67 9 1 1685 1750 689376814 689376748 3.320000e-07 67.6
12 TraesCS7D01G373400 chr7B 89.409 1388 100 21 2098 3449 509568089 509566713 0.000000e+00 1705.0
13 TraesCS7D01G373400 chr7B 89.082 1383 86 19 3770 5141 509566716 509565388 0.000000e+00 1657.0
14 TraesCS7D01G373400 chr7B 94.481 1051 51 3 636 1684 509569735 509568690 0.000000e+00 1613.0
15 TraesCS7D01G373400 chr7B 81.498 454 45 23 216 635 509570216 509569768 2.290000e-88 337.0
16 TraesCS7D01G373400 chr7B 93.064 173 8 1 1760 1932 509568582 509568414 3.070000e-62 250.0
17 TraesCS7D01G373400 chr7B 90.811 185 11 2 1940 2124 509568277 509568099 5.140000e-60 243.0
18 TraesCS7D01G373400 chr6D 91.818 330 27 0 3448 3777 67061990 67062319 1.300000e-125 460.0
19 TraesCS7D01G373400 chr6D 91.768 328 25 2 3447 3773 311553880 311554206 6.070000e-124 455.0
20 TraesCS7D01G373400 chr6D 86.567 67 8 1 1685 1750 428262134 428262068 7.140000e-09 73.1
21 TraesCS7D01G373400 chr3D 91.768 328 27 0 3446 3773 490460647 490460320 1.690000e-124 457.0
22 TraesCS7D01G373400 chr3D 82.439 205 32 4 1263 1465 442173333 442173535 5.290000e-40 176.0
23 TraesCS7D01G373400 chr4A 91.489 329 27 1 3448 3775 517793148 517793476 7.850000e-123 451.0
24 TraesCS7D01G373400 chr4A 90.991 333 28 2 3442 3773 158289669 158290000 1.020000e-121 448.0
25 TraesCS7D01G373400 chr3A 90.801 337 29 2 3448 3782 89600362 89600026 2.820000e-122 449.0
26 TraesCS7D01G373400 chr3A 81.463 205 34 4 1263 1465 583243125 583243327 1.150000e-36 165.0
27 TraesCS7D01G373400 chr1B 90.351 342 28 5 3439 3777 145779193 145778854 1.310000e-120 444.0
28 TraesCS7D01G373400 chr1B 87.500 56 7 0 1373 1428 631967499 631967444 1.190000e-06 65.8
29 TraesCS7D01G373400 chr3B 81.951 205 33 4 1263 1465 579450896 579451098 2.460000e-38 171.0
30 TraesCS7D01G373400 chr5D 97.826 46 1 0 1698 1743 179264241 179264286 4.270000e-11 80.5
31 TraesCS7D01G373400 chr2D 81.111 90 17 0 1373 1462 471055944 471055855 7.140000e-09 73.1
32 TraesCS7D01G373400 chr2A 81.111 90 17 0 1373 1462 612835024 612834935 7.140000e-09 73.1
33 TraesCS7D01G373400 chr2A 92.000 50 4 0 1694 1743 54253655 54253704 2.570000e-08 71.3
34 TraesCS7D01G373400 chr2B 85.075 67 9 1 1685 1750 575876619 575876553 3.320000e-07 67.6
35 TraesCS7D01G373400 chrUn 82.051 78 12 2 1674 1750 89753585 89753661 1.190000e-06 65.8
36 TraesCS7D01G373400 chr1A 87.500 56 7 0 1373 1428 551592912 551592857 1.190000e-06 65.8
37 TraesCS7D01G373400 chr6B 87.500 56 6 1 230 284 634325063 634325118 4.300000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G373400 chr7D 483920061 483925201 5140 True 9494.0 9494 100.000000 1 5141 1 chr7D.!!$R1 5140
1 TraesCS7D01G373400 chr7A 550299346 550304032 4686 True 1261.6 2217 94.847400 636 5141 5 chr7A.!!$R4 4505
2 TraesCS7D01G373400 chr7B 509565388 509570216 4828 True 967.5 1705 89.724167 216 5141 6 chr7B.!!$R1 4925

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 963 1.202463 CCCGCGATCAATCTCTTGTCT 60.202 52.381 8.23 0.0 33.87 3.41 F
1649 1989 0.189574 TGATTGGCTTGGGGGAACAA 59.810 50.000 0.00 0.0 0.00 2.83 F
1701 2072 1.000612 GTCCCCCGGCCCAAAATAA 59.999 57.895 0.00 0.0 0.00 1.40 F
1703 2074 1.001120 CCCCCGGCCCAAAATAAGT 59.999 57.895 0.00 0.0 0.00 2.24 F
3059 3810 1.270550 CCCTTCATTCCAATATGCCGC 59.729 52.381 0.00 0.0 0.00 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 3319 1.736612 CAGCTTTCTGGAGCCTCTTC 58.263 55.0 0.0 0.0 43.74 2.87 R
3178 3936 1.593196 CTGAACAAAAGCGGACCAGA 58.407 50.0 0.0 0.0 0.00 3.86 R
3647 4415 2.031258 TGTGCTCGTTTTCCTCACAA 57.969 45.0 0.0 0.0 35.08 3.33 R
3648 4416 2.254546 ATGTGCTCGTTTTCCTCACA 57.745 45.0 0.0 0.0 41.18 3.58 R
4273 5045 0.107703 TCGTCATTGTCCCAGATGCC 60.108 55.0 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.607285 ACATGTTAAACATTTTTCGTAGACATC 57.393 29.630 0.00 0.00 36.53 3.06
53 54 9.605955 CATGTTAAACATTTTTCGTAGACATCA 57.394 29.630 0.00 0.00 36.53 3.07
656 725 4.074970 GACATTCTGCCTTTTCTTCCAGA 58.925 43.478 0.00 0.00 32.90 3.86
887 958 1.227380 GCACCCGCGATCAATCTCT 60.227 57.895 8.23 0.00 0.00 3.10
892 963 1.202463 CCCGCGATCAATCTCTTGTCT 60.202 52.381 8.23 0.00 33.87 3.41
916 987 6.944096 TCTCCCTAGATTAGATTCGATCGTA 58.056 40.000 15.94 5.83 0.00 3.43
917 988 7.566569 TCTCCCTAGATTAGATTCGATCGTAT 58.433 38.462 15.94 11.40 0.00 3.06
918 989 7.711772 TCTCCCTAGATTAGATTCGATCGTATC 59.288 40.741 22.71 22.71 0.00 2.24
991 1062 1.737793 AGATTGGATTGGTTTCGCGTC 59.262 47.619 5.77 0.00 0.00 5.19
1012 1083 0.302890 GTCGCTGATGCATTTCCTCG 59.697 55.000 0.00 1.11 39.64 4.63
1025 1096 4.929808 GCATTTCCTCGACTCTGTTCTTAA 59.070 41.667 0.00 0.00 0.00 1.85
1164 1235 4.363990 CCGCTGTCACCGCTGTCT 62.364 66.667 0.00 0.00 0.00 3.41
1649 1989 0.189574 TGATTGGCTTGGGGGAACAA 59.810 50.000 0.00 0.00 0.00 2.83
1654 1994 1.194121 GGCTTGGGGGAACAATGCTT 61.194 55.000 0.00 0.00 0.00 3.91
1665 2005 4.441792 GGAACAATGCTTTTGGTCAAACT 58.558 39.130 16.43 0.00 37.85 2.66
1666 2006 4.875536 GGAACAATGCTTTTGGTCAAACTT 59.124 37.500 16.43 0.00 37.85 2.66
1684 2024 8.565416 GTCAAACTTTTTGCCTAGTTGTATAGT 58.435 33.333 0.00 0.00 34.95 2.12
1691 2062 2.245582 CCTAGTTGTATAGTCCCCCGG 58.754 57.143 0.00 0.00 0.00 5.73
1692 2063 1.617357 CTAGTTGTATAGTCCCCCGGC 59.383 57.143 0.00 0.00 0.00 6.13
1701 2072 1.000612 GTCCCCCGGCCCAAAATAA 59.999 57.895 0.00 0.00 0.00 1.40
1702 2073 1.040893 GTCCCCCGGCCCAAAATAAG 61.041 60.000 0.00 0.00 0.00 1.73
1703 2074 1.001120 CCCCCGGCCCAAAATAAGT 59.999 57.895 0.00 0.00 0.00 2.24
1707 2078 1.615919 CCCGGCCCAAAATAAGTGACT 60.616 52.381 0.00 0.00 0.00 3.41
1708 2079 1.743394 CCGGCCCAAAATAAGTGACTC 59.257 52.381 0.00 0.00 0.00 3.36
1709 2080 2.432444 CGGCCCAAAATAAGTGACTCA 58.568 47.619 0.00 0.00 0.00 3.41
1710 2081 2.817258 CGGCCCAAAATAAGTGACTCAA 59.183 45.455 0.00 0.00 0.00 3.02
1711 2082 3.119849 CGGCCCAAAATAAGTGACTCAAG 60.120 47.826 0.00 0.00 0.00 3.02
1713 2084 4.082733 GGCCCAAAATAAGTGACTCAAGTC 60.083 45.833 3.13 3.13 44.97 3.01
1714 2085 4.762251 GCCCAAAATAAGTGACTCAAGTCT 59.238 41.667 11.23 0.00 44.99 3.24
1715 2086 5.335191 GCCCAAAATAAGTGACTCAAGTCTG 60.335 44.000 11.23 0.00 44.99 3.51
1716 2087 5.765182 CCCAAAATAAGTGACTCAAGTCTGT 59.235 40.000 11.23 0.12 44.99 3.41
1717 2088 6.934645 CCCAAAATAAGTGACTCAAGTCTGTA 59.065 38.462 11.23 2.13 44.99 2.74
1719 2090 7.657761 CCAAAATAAGTGACTCAAGTCTGTACT 59.342 37.037 11.23 4.15 44.99 2.73
1722 2093 9.694137 AAATAAGTGACTCAAGTCTGTACTAAC 57.306 33.333 11.23 0.04 44.99 2.34
1725 2096 7.349412 AGTGACTCAAGTCTGTACTAACTTT 57.651 36.000 11.23 0.00 44.99 2.66
1726 2097 7.203910 AGTGACTCAAGTCTGTACTAACTTTG 58.796 38.462 11.23 8.80 44.99 2.77
1727 2098 6.979238 GTGACTCAAGTCTGTACTAACTTTGT 59.021 38.462 11.23 11.06 44.99 2.83
1728 2099 8.133627 GTGACTCAAGTCTGTACTAACTTTGTA 58.866 37.037 11.23 1.30 44.99 2.41
1730 2101 9.694137 GACTCAAGTCTGTACTAACTTTGTATT 57.306 33.333 9.78 0.00 41.65 1.89
1755 2126 7.787725 AAAGTTAGTACAGACTTGAAGTTGG 57.212 36.000 12.76 0.00 36.31 3.77
1756 2127 6.481434 AGTTAGTACAGACTTGAAGTTGGT 57.519 37.500 0.00 3.74 37.10 3.67
1801 2174 2.511600 CGGCTGCCGGGAAGTAAG 60.512 66.667 32.37 1.20 44.15 2.34
1802 2175 2.669240 GGCTGCCGGGAAGTAAGT 59.331 61.111 1.35 0.00 0.00 2.24
1819 2196 8.235226 GGAAGTAAGTAAGAAAGTGGTTATTGC 58.765 37.037 0.00 0.00 0.00 3.56
1841 2218 2.005451 CTGAAGTGCTGGTATGTGCTC 58.995 52.381 0.00 0.00 0.00 4.26
1850 2227 3.494048 GCTGGTATGTGCTCTGCTAATCT 60.494 47.826 0.00 0.00 0.00 2.40
1855 2232 3.825143 TGTGCTCTGCTAATCTATGCA 57.175 42.857 0.00 0.00 37.63 3.96
2004 2510 2.984471 GTCGACGACACTTGCTGAATTA 59.016 45.455 22.66 0.00 32.09 1.40
2051 2557 6.928348 TGACTCTTTGGGTGATAGTTCTAA 57.072 37.500 0.00 0.00 0.00 2.10
2198 2924 5.636903 ATATAAGTTGGTGATCAGCTGGT 57.363 39.130 24.30 6.50 37.01 4.00
2257 2984 2.742204 GCCTCTTATCGAGTGGGTTTCC 60.742 54.545 0.00 0.00 39.05 3.13
2318 3045 6.594937 ACCAACAATGATGCCATATTTGTTTC 59.405 34.615 12.35 0.00 32.12 2.78
2613 3361 2.639839 TCTAGGCCTTTATCCAGATGGC 59.360 50.000 12.58 0.00 42.56 4.40
2661 3409 4.624913 AGATGGGTTCTCATAGTCCTGAA 58.375 43.478 0.00 0.00 0.00 3.02
2682 3430 2.036733 AGATTCACGTGGGAAGAAACGA 59.963 45.455 17.00 0.00 42.32 3.85
3059 3810 1.270550 CCCTTCATTCCAATATGCCGC 59.729 52.381 0.00 0.00 0.00 6.53
3265 4030 3.633525 TCAGAACTGCCATTTCCATATGC 59.366 43.478 0.00 0.00 0.00 3.14
3281 4046 8.774546 TTCCATATGCTTACCATTTTATTCCA 57.225 30.769 0.00 0.00 35.34 3.53
3282 4047 8.954834 TCCATATGCTTACCATTTTATTCCAT 57.045 30.769 0.00 0.00 35.34 3.41
3285 4050 8.805175 CATATGCTTACCATTTTATTCCATCCA 58.195 33.333 0.00 0.00 35.34 3.41
3363 4128 5.783875 ACCTACAAATCACCTACTGGTAAGT 59.216 40.000 0.00 0.00 46.60 2.24
3377 4143 9.614792 CCTACTGGTAAGTTTGCTTAATCTTAT 57.385 33.333 0.00 0.00 38.74 1.73
3457 4225 7.451731 TTTTGATGTATCAATACTCCCTCCT 57.548 36.000 8.02 0.00 45.30 3.69
3458 4226 7.451731 TTTGATGTATCAATACTCCCTCCTT 57.548 36.000 8.02 0.00 45.30 3.36
3459 4227 7.451731 TTGATGTATCAATACTCCCTCCTTT 57.548 36.000 3.28 0.00 41.51 3.11
3460 4228 7.067496 TGATGTATCAATACTCCCTCCTTTC 57.933 40.000 2.13 0.00 33.08 2.62
3461 4229 5.888982 TGTATCAATACTCCCTCCTTTCC 57.111 43.478 2.13 0.00 34.41 3.13
3462 4230 4.344102 TGTATCAATACTCCCTCCTTTCCG 59.656 45.833 2.13 0.00 34.41 4.30
3463 4231 2.116238 TCAATACTCCCTCCTTTCCGG 58.884 52.381 0.00 0.00 0.00 5.14
3464 4232 1.838077 CAATACTCCCTCCTTTCCGGT 59.162 52.381 0.00 0.00 0.00 5.28
3465 4233 2.238898 CAATACTCCCTCCTTTCCGGTT 59.761 50.000 0.00 0.00 0.00 4.44
3466 4234 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
3467 4235 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
3468 4236 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
3469 4237 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
3470 4238 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
3471 4239 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
3472 4240 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
3473 4241 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
3474 4242 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
3475 4243 2.848071 TCCTTTCCGGTTTATAGGGCTT 59.152 45.455 0.00 0.00 0.00 4.35
3476 4244 4.039339 TCCTTTCCGGTTTATAGGGCTTA 58.961 43.478 0.00 0.00 0.00 3.09
3477 4245 4.661709 TCCTTTCCGGTTTATAGGGCTTAT 59.338 41.667 0.00 0.00 0.00 1.73
3478 4246 5.001874 CCTTTCCGGTTTATAGGGCTTATC 58.998 45.833 0.00 0.00 0.00 1.75
3479 4247 5.221864 CCTTTCCGGTTTATAGGGCTTATCT 60.222 44.000 0.00 0.00 0.00 1.98
3480 4248 5.479124 TTCCGGTTTATAGGGCTTATCTC 57.521 43.478 0.00 0.00 0.00 2.75
3481 4249 4.485875 TCCGGTTTATAGGGCTTATCTCA 58.514 43.478 0.00 0.00 0.00 3.27
3482 4250 4.903049 TCCGGTTTATAGGGCTTATCTCAA 59.097 41.667 0.00 0.00 0.00 3.02
3483 4251 5.367352 TCCGGTTTATAGGGCTTATCTCAAA 59.633 40.000 0.00 0.00 0.00 2.69
3484 4252 6.059484 CCGGTTTATAGGGCTTATCTCAAAA 58.941 40.000 0.00 0.00 0.00 2.44
3485 4253 6.715264 CCGGTTTATAGGGCTTATCTCAAAAT 59.285 38.462 0.00 0.00 0.00 1.82
3486 4254 7.230712 CCGGTTTATAGGGCTTATCTCAAAATT 59.769 37.037 0.00 0.00 0.00 1.82
3487 4255 8.630037 CGGTTTATAGGGCTTATCTCAAAATTT 58.370 33.333 0.00 0.00 0.00 1.82
3493 4261 9.715119 ATAGGGCTTATCTCAAAATTTTAGGTT 57.285 29.630 2.44 0.00 0.00 3.50
3494 4262 8.435931 AGGGCTTATCTCAAAATTTTAGGTTT 57.564 30.769 2.44 0.00 0.00 3.27
3495 4263 8.531982 AGGGCTTATCTCAAAATTTTAGGTTTC 58.468 33.333 2.44 0.00 0.00 2.78
3496 4264 7.764443 GGGCTTATCTCAAAATTTTAGGTTTCC 59.236 37.037 2.44 0.00 0.00 3.13
3497 4265 7.764443 GGCTTATCTCAAAATTTTAGGTTTCCC 59.236 37.037 2.44 0.00 0.00 3.97
3498 4266 8.311109 GCTTATCTCAAAATTTTAGGTTTCCCA 58.689 33.333 2.44 0.00 0.00 4.37
3515 4283 9.547279 AGGTTTCCCATTTTATAAGTCTCAATT 57.453 29.630 0.00 0.00 0.00 2.32
3527 4295 5.728637 AAGTCTCAATTTGATTGTTCCCC 57.271 39.130 0.00 0.00 41.02 4.81
3528 4296 4.739793 AGTCTCAATTTGATTGTTCCCCA 58.260 39.130 0.00 0.00 41.02 4.96
3529 4297 5.336102 AGTCTCAATTTGATTGTTCCCCAT 58.664 37.500 0.00 0.00 41.02 4.00
3530 4298 5.420104 AGTCTCAATTTGATTGTTCCCCATC 59.580 40.000 0.00 0.00 41.02 3.51
3531 4299 5.185635 GTCTCAATTTGATTGTTCCCCATCA 59.814 40.000 0.00 0.00 41.02 3.07
3532 4300 5.959594 TCTCAATTTGATTGTTCCCCATCAT 59.040 36.000 0.00 0.00 41.02 2.45
3533 4301 7.068593 GTCTCAATTTGATTGTTCCCCATCATA 59.931 37.037 0.00 0.00 41.02 2.15
3534 4302 7.785985 TCTCAATTTGATTGTTCCCCATCATAT 59.214 33.333 0.00 0.00 41.02 1.78
3535 4303 7.728148 TCAATTTGATTGTTCCCCATCATATG 58.272 34.615 0.00 0.00 41.02 1.78
3536 4304 7.345132 TCAATTTGATTGTTCCCCATCATATGT 59.655 33.333 1.90 0.00 41.02 2.29
3537 4305 7.679732 ATTTGATTGTTCCCCATCATATGTT 57.320 32.000 1.90 0.00 0.00 2.71
3538 4306 8.780616 ATTTGATTGTTCCCCATCATATGTTA 57.219 30.769 1.90 0.00 0.00 2.41
3539 4307 8.601047 TTTGATTGTTCCCCATCATATGTTAA 57.399 30.769 1.90 0.00 0.00 2.01
3540 4308 7.822161 TGATTGTTCCCCATCATATGTTAAG 57.178 36.000 1.90 0.00 0.00 1.85
3541 4309 7.581814 TGATTGTTCCCCATCATATGTTAAGA 58.418 34.615 1.90 0.00 0.00 2.10
3542 4310 8.226810 TGATTGTTCCCCATCATATGTTAAGAT 58.773 33.333 1.90 0.00 0.00 2.40
3543 4311 9.082313 GATTGTTCCCCATCATATGTTAAGATT 57.918 33.333 1.90 0.00 0.00 2.40
3544 4312 8.837099 TTGTTCCCCATCATATGTTAAGATTT 57.163 30.769 1.90 0.00 0.00 2.17
3545 4313 8.463930 TGTTCCCCATCATATGTTAAGATTTC 57.536 34.615 1.90 0.00 0.00 2.17
3546 4314 8.058235 TGTTCCCCATCATATGTTAAGATTTCA 58.942 33.333 1.90 0.00 0.00 2.69
3547 4315 8.912988 GTTCCCCATCATATGTTAAGATTTCAA 58.087 33.333 1.90 0.00 0.00 2.69
3548 4316 9.486123 TTCCCCATCATATGTTAAGATTTCAAA 57.514 29.630 1.90 0.00 0.00 2.69
3549 4317 9.135189 TCCCCATCATATGTTAAGATTTCAAAG 57.865 33.333 1.90 0.00 0.00 2.77
3550 4318 8.917088 CCCCATCATATGTTAAGATTTCAAAGT 58.083 33.333 1.90 0.00 0.00 2.66
3551 4319 9.740239 CCCATCATATGTTAAGATTTCAAAGTG 57.260 33.333 1.90 0.00 0.00 3.16
3552 4320 9.241317 CCATCATATGTTAAGATTTCAAAGTGC 57.759 33.333 1.90 0.00 0.00 4.40
3553 4321 9.791820 CATCATATGTTAAGATTTCAAAGTGCA 57.208 29.630 1.90 0.00 0.00 4.57
3565 4333 8.662141 AGATTTCAAAGTGCATTAAATCATTGC 58.338 29.630 14.63 0.00 38.45 3.56
3566 4334 7.725818 TTTCAAAGTGCATTAAATCATTGCA 57.274 28.000 0.00 0.00 43.63 4.08
3567 4335 7.908827 TTCAAAGTGCATTAAATCATTGCAT 57.091 28.000 4.14 0.00 46.90 3.96
3568 4336 7.297229 TCAAAGTGCATTAAATCATTGCATG 57.703 32.000 4.14 0.11 46.90 4.06
3569 4337 5.728351 AAGTGCATTAAATCATTGCATGC 57.272 34.783 11.82 11.82 46.90 4.06
3570 4338 3.799963 AGTGCATTAAATCATTGCATGCG 59.200 39.130 14.09 0.00 46.90 4.73
3571 4339 3.797796 GTGCATTAAATCATTGCATGCGA 59.202 39.130 10.79 10.79 46.90 5.10
3572 4340 4.045783 TGCATTAAATCATTGCATGCGAG 58.954 39.130 14.20 5.64 41.18 5.03
3573 4341 3.427528 GCATTAAATCATTGCATGCGAGG 59.572 43.478 13.50 13.50 36.40 4.63
3574 4342 4.793678 GCATTAAATCATTGCATGCGAGGA 60.794 41.667 23.55 23.55 36.40 3.71
3575 4343 5.466819 CATTAAATCATTGCATGCGAGGAT 58.533 37.500 25.72 25.72 32.87 3.24
3576 4344 5.518848 TTAAATCATTGCATGCGAGGATT 57.481 34.783 32.28 32.28 41.04 3.01
3577 4345 6.631971 TTAAATCATTGCATGCGAGGATTA 57.368 33.333 35.68 24.14 39.16 1.75
3578 4346 5.518848 AAATCATTGCATGCGAGGATTAA 57.481 34.783 35.68 15.88 39.16 1.40
3579 4347 4.761235 ATCATTGCATGCGAGGATTAAG 57.239 40.909 25.72 5.04 27.56 1.85
3580 4348 3.807553 TCATTGCATGCGAGGATTAAGA 58.192 40.909 18.11 0.00 0.00 2.10
3581 4349 3.561310 TCATTGCATGCGAGGATTAAGAC 59.439 43.478 18.11 0.00 0.00 3.01
3582 4350 2.689553 TGCATGCGAGGATTAAGACA 57.310 45.000 14.09 0.00 0.00 3.41
3583 4351 2.984562 TGCATGCGAGGATTAAGACAA 58.015 42.857 14.09 0.00 0.00 3.18
3584 4352 3.342719 TGCATGCGAGGATTAAGACAAA 58.657 40.909 14.09 0.00 0.00 2.83
3585 4353 3.755905 TGCATGCGAGGATTAAGACAAAA 59.244 39.130 14.09 0.00 0.00 2.44
3586 4354 4.098416 GCATGCGAGGATTAAGACAAAAC 58.902 43.478 0.00 0.00 0.00 2.43
3587 4355 4.142600 GCATGCGAGGATTAAGACAAAACT 60.143 41.667 0.00 0.00 0.00 2.66
3588 4356 5.327091 CATGCGAGGATTAAGACAAAACTG 58.673 41.667 0.00 0.00 0.00 3.16
3589 4357 4.637276 TGCGAGGATTAAGACAAAACTGA 58.363 39.130 0.00 0.00 0.00 3.41
3590 4358 4.451096 TGCGAGGATTAAGACAAAACTGAC 59.549 41.667 0.00 0.00 0.00 3.51
3591 4359 4.142881 GCGAGGATTAAGACAAAACTGACC 60.143 45.833 0.00 0.00 0.00 4.02
3592 4360 4.994852 CGAGGATTAAGACAAAACTGACCA 59.005 41.667 0.00 0.00 0.00 4.02
3593 4361 5.468746 CGAGGATTAAGACAAAACTGACCAA 59.531 40.000 0.00 0.00 0.00 3.67
3594 4362 6.149474 CGAGGATTAAGACAAAACTGACCAAT 59.851 38.462 0.00 0.00 0.00 3.16
3595 4363 7.219484 AGGATTAAGACAAAACTGACCAATG 57.781 36.000 0.00 0.00 0.00 2.82
3596 4364 5.863935 GGATTAAGACAAAACTGACCAATGC 59.136 40.000 0.00 0.00 0.00 3.56
3597 4365 5.843673 TTAAGACAAAACTGACCAATGCA 57.156 34.783 0.00 0.00 0.00 3.96
3598 4366 4.942761 AAGACAAAACTGACCAATGCAT 57.057 36.364 0.00 0.00 0.00 3.96
3599 4367 4.247267 AGACAAAACTGACCAATGCATG 57.753 40.909 0.00 0.00 0.00 4.06
3600 4368 3.638160 AGACAAAACTGACCAATGCATGT 59.362 39.130 0.00 0.00 0.00 3.21
3601 4369 4.826733 AGACAAAACTGACCAATGCATGTA 59.173 37.500 0.00 0.00 0.00 2.29
3602 4370 4.870363 ACAAAACTGACCAATGCATGTAC 58.130 39.130 0.00 0.00 0.00 2.90
3603 4371 4.584325 ACAAAACTGACCAATGCATGTACT 59.416 37.500 0.00 0.00 0.00 2.73
3604 4372 5.068987 ACAAAACTGACCAATGCATGTACTT 59.931 36.000 0.00 0.00 0.00 2.24
3605 4373 5.789643 AAACTGACCAATGCATGTACTTT 57.210 34.783 0.00 0.00 0.00 2.66
3606 4374 6.892658 AAACTGACCAATGCATGTACTTTA 57.107 33.333 0.00 0.00 0.00 1.85
3607 4375 7.466746 AAACTGACCAATGCATGTACTTTAT 57.533 32.000 0.00 0.00 0.00 1.40
3608 4376 6.441093 ACTGACCAATGCATGTACTTTATG 57.559 37.500 0.00 0.00 0.00 1.90
3643 4411 8.933807 CATTACAATTAATGCATTGGAAACACA 58.066 29.630 22.27 0.00 39.85 3.72
3644 4412 8.893219 TTACAATTAATGCATTGGAAACACAA 57.107 26.923 22.27 5.84 42.67 3.33
3645 4413 7.982761 ACAATTAATGCATTGGAAACACAAT 57.017 28.000 22.27 7.98 42.67 2.71
3646 4414 8.393671 ACAATTAATGCATTGGAAACACAATT 57.606 26.923 22.27 13.28 42.67 2.32
3647 4415 8.848182 ACAATTAATGCATTGGAAACACAATTT 58.152 25.926 22.27 5.81 42.67 1.82
3648 4416 9.680315 CAATTAATGCATTGGAAACACAATTTT 57.320 25.926 22.27 0.00 42.67 1.82
3649 4417 9.680315 AATTAATGCATTGGAAACACAATTTTG 57.320 25.926 22.27 0.00 42.67 2.44
3650 4418 6.696441 AATGCATTGGAAACACAATTTTGT 57.304 29.167 12.09 0.00 42.67 2.83
3663 4431 4.359706 ACAATTTTGTGAGGAAAACGAGC 58.640 39.130 0.00 0.00 40.49 5.03
3664 4432 4.142271 ACAATTTTGTGAGGAAAACGAGCA 60.142 37.500 0.00 0.00 40.49 4.26
3665 4433 3.414549 TTTTGTGAGGAAAACGAGCAC 57.585 42.857 0.00 0.00 0.00 4.40
3666 4434 2.031258 TTGTGAGGAAAACGAGCACA 57.969 45.000 0.00 0.00 37.66 4.57
3667 4435 2.254546 TGTGAGGAAAACGAGCACAT 57.745 45.000 0.00 0.00 34.85 3.21
3668 4436 2.571212 TGTGAGGAAAACGAGCACATT 58.429 42.857 0.00 0.00 34.85 2.71
3669 4437 3.734463 TGTGAGGAAAACGAGCACATTA 58.266 40.909 0.00 0.00 34.85 1.90
3670 4438 4.130857 TGTGAGGAAAACGAGCACATTAA 58.869 39.130 0.00 0.00 34.85 1.40
3671 4439 4.759693 TGTGAGGAAAACGAGCACATTAAT 59.240 37.500 0.00 0.00 34.85 1.40
3672 4440 5.240623 TGTGAGGAAAACGAGCACATTAATT 59.759 36.000 0.00 0.00 34.85 1.40
3673 4441 5.569059 GTGAGGAAAACGAGCACATTAATTG 59.431 40.000 0.00 0.00 0.00 2.32
3674 4442 5.240623 TGAGGAAAACGAGCACATTAATTGT 59.759 36.000 0.00 0.00 39.91 2.71
3675 4443 6.084326 AGGAAAACGAGCACATTAATTGTT 57.916 33.333 0.00 0.00 36.00 2.83
3676 4444 6.512297 AGGAAAACGAGCACATTAATTGTTT 58.488 32.000 0.00 0.00 36.00 2.83
3677 4445 6.983890 AGGAAAACGAGCACATTAATTGTTTT 59.016 30.769 4.50 4.50 41.16 2.43
3678 4446 7.494298 AGGAAAACGAGCACATTAATTGTTTTT 59.506 29.630 5.85 3.15 39.48 1.94
3720 4488 7.823745 AATATTCCACCACTCATCATTTACC 57.176 36.000 0.00 0.00 0.00 2.85
3721 4489 4.927267 TTCCACCACTCATCATTTACCT 57.073 40.909 0.00 0.00 0.00 3.08
3722 4490 4.927267 TCCACCACTCATCATTTACCTT 57.073 40.909 0.00 0.00 0.00 3.50
3723 4491 6.381498 TTCCACCACTCATCATTTACCTTA 57.619 37.500 0.00 0.00 0.00 2.69
3724 4492 5.989477 TCCACCACTCATCATTTACCTTAG 58.011 41.667 0.00 0.00 0.00 2.18
3725 4493 5.487488 TCCACCACTCATCATTTACCTTAGT 59.513 40.000 0.00 0.00 0.00 2.24
3726 4494 6.012858 TCCACCACTCATCATTTACCTTAGTT 60.013 38.462 0.00 0.00 0.00 2.24
3727 4495 6.094048 CCACCACTCATCATTTACCTTAGTTG 59.906 42.308 0.00 0.00 0.00 3.16
3728 4496 6.094048 CACCACTCATCATTTACCTTAGTTGG 59.906 42.308 0.00 0.00 0.00 3.77
3729 4497 6.180472 CCACTCATCATTTACCTTAGTTGGT 58.820 40.000 0.00 0.00 43.66 3.67
3730 4498 6.094048 CCACTCATCATTTACCTTAGTTGGTG 59.906 42.308 0.00 0.00 41.05 4.17
3731 4499 6.878923 CACTCATCATTTACCTTAGTTGGTGA 59.121 38.462 0.00 0.00 41.05 4.02
3732 4500 7.065085 CACTCATCATTTACCTTAGTTGGTGAG 59.935 40.741 9.34 9.34 46.25 3.51
3733 4501 7.038302 ACTCATCATTTACCTTAGTTGGTGAGA 60.038 37.037 16.07 0.00 44.55 3.27
3734 4502 7.861629 TCATCATTTACCTTAGTTGGTGAGAT 58.138 34.615 0.00 0.00 41.05 2.75
3735 4503 8.328758 TCATCATTTACCTTAGTTGGTGAGATT 58.671 33.333 0.00 0.00 41.05 2.40
3736 4504 8.960591 CATCATTTACCTTAGTTGGTGAGATTT 58.039 33.333 0.00 0.00 41.05 2.17
3737 4505 8.934023 TCATTTACCTTAGTTGGTGAGATTTT 57.066 30.769 0.00 0.00 41.05 1.82
3738 4506 9.362151 TCATTTACCTTAGTTGGTGAGATTTTT 57.638 29.630 0.00 0.00 41.05 1.94
3739 4507 9.410556 CATTTACCTTAGTTGGTGAGATTTTTG 57.589 33.333 0.00 0.00 41.05 2.44
3740 4508 8.754991 TTTACCTTAGTTGGTGAGATTTTTGA 57.245 30.769 0.00 0.00 41.05 2.69
3741 4509 8.754991 TTACCTTAGTTGGTGAGATTTTTGAA 57.245 30.769 0.00 0.00 41.05 2.69
3742 4510 7.839680 ACCTTAGTTGGTGAGATTTTTGAAT 57.160 32.000 0.00 0.00 39.17 2.57
3743 4511 8.250143 ACCTTAGTTGGTGAGATTTTTGAATT 57.750 30.769 0.00 0.00 39.17 2.17
3744 4512 8.143835 ACCTTAGTTGGTGAGATTTTTGAATTG 58.856 33.333 0.00 0.00 39.17 2.32
3745 4513 8.359642 CCTTAGTTGGTGAGATTTTTGAATTGA 58.640 33.333 0.00 0.00 0.00 2.57
3746 4514 9.403110 CTTAGTTGGTGAGATTTTTGAATTGAG 57.597 33.333 0.00 0.00 0.00 3.02
3747 4515 6.218746 AGTTGGTGAGATTTTTGAATTGAGC 58.781 36.000 0.00 0.00 0.00 4.26
3748 4516 5.138125 TGGTGAGATTTTTGAATTGAGCC 57.862 39.130 0.00 0.00 0.00 4.70
3749 4517 4.021192 TGGTGAGATTTTTGAATTGAGCCC 60.021 41.667 0.00 0.00 0.00 5.19
3750 4518 4.221482 GGTGAGATTTTTGAATTGAGCCCT 59.779 41.667 0.00 0.00 0.00 5.19
3751 4519 5.418840 GGTGAGATTTTTGAATTGAGCCCTA 59.581 40.000 0.00 0.00 0.00 3.53
3752 4520 6.097412 GGTGAGATTTTTGAATTGAGCCCTAT 59.903 38.462 0.00 0.00 0.00 2.57
3753 4521 7.285401 GGTGAGATTTTTGAATTGAGCCCTATA 59.715 37.037 0.00 0.00 0.00 1.31
3754 4522 8.686334 GTGAGATTTTTGAATTGAGCCCTATAA 58.314 33.333 0.00 0.00 0.00 0.98
3755 4523 9.253832 TGAGATTTTTGAATTGAGCCCTATAAA 57.746 29.630 0.00 0.00 0.00 1.40
3756 4524 9.521503 GAGATTTTTGAATTGAGCCCTATAAAC 57.478 33.333 0.00 0.00 0.00 2.01
3757 4525 8.478066 AGATTTTTGAATTGAGCCCTATAAACC 58.522 33.333 0.00 0.00 0.00 3.27
3758 4526 5.828299 TTTGAATTGAGCCCTATAAACCG 57.172 39.130 0.00 0.00 0.00 4.44
3759 4527 3.815809 TGAATTGAGCCCTATAAACCGG 58.184 45.455 0.00 0.00 0.00 5.28
3760 4528 3.456644 TGAATTGAGCCCTATAAACCGGA 59.543 43.478 9.46 0.00 0.00 5.14
3761 4529 4.080243 TGAATTGAGCCCTATAAACCGGAA 60.080 41.667 9.46 0.00 0.00 4.30
3762 4530 4.513406 ATTGAGCCCTATAAACCGGAAA 57.487 40.909 9.46 0.00 0.00 3.13
3763 4531 3.553828 TGAGCCCTATAAACCGGAAAG 57.446 47.619 9.46 0.00 0.00 2.62
3765 4533 2.436911 GAGCCCTATAAACCGGAAAGGA 59.563 50.000 9.46 0.00 45.00 3.36
3766 4534 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
3767 4535 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
3768 4536 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
3769 4537 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
3900 4672 4.731720 TCATGGACAACAAACATAATGCG 58.268 39.130 0.00 0.00 0.00 4.73
4274 5046 9.716507 CTACAACAATTATCATTTTTAGGACGG 57.283 33.333 0.00 0.00 0.00 4.79
4293 5065 1.475751 GGCATCTGGGACAATGACGAT 60.476 52.381 0.00 0.00 38.70 3.73
4304 5076 4.447054 GGACAATGACGATGATGATGACTC 59.553 45.833 0.00 0.00 0.00 3.36
4307 5079 3.443099 TGACGATGATGATGACTCCAC 57.557 47.619 0.00 0.00 0.00 4.02
4339 5111 4.587684 GTCCTAGTCTCCCGATTTTATCCA 59.412 45.833 0.00 0.00 0.00 3.41
4345 5117 5.425539 AGTCTCCCGATTTTATCCAGAGAAA 59.574 40.000 0.00 0.00 36.38 2.52
4362 5134 7.066645 TCCAGAGAAACATTATTCATGAAGCAG 59.933 37.037 14.54 6.38 36.24 4.24
4659 5440 9.830294 GTGGTTGTATGGTATTTTTAGTTACAC 57.170 33.333 0.00 0.00 0.00 2.90
4685 5466 7.307751 CGAGACATGCAAACTTCCTTTAGTTTA 60.308 37.037 0.00 0.00 44.33 2.01
4691 5472 8.696410 TGCAAACTTCCTTTAGTTTAACTTTG 57.304 30.769 1.94 0.00 44.33 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.607285 GATGTCTACGAAAAATGTTTAACATGT 57.393 29.630 11.60 2.78 37.97 3.21
27 28 9.605955 TGATGTCTACGAAAAATGTTTAACATG 57.394 29.630 11.60 1.32 37.97 3.21
362 363 8.950208 TTCATTTTAGGGAAAATTTTGAACGT 57.050 26.923 8.47 3.15 41.53 3.99
594 631 3.365265 CGGCCCAAAAGCGCTCTT 61.365 61.111 12.06 0.00 0.00 2.85
615 652 0.528466 CTGAAGCGAGCGCCAGATTA 60.528 55.000 11.66 0.00 43.17 1.75
656 725 0.541863 CCACCCCGAGAAATGTAGCT 59.458 55.000 0.00 0.00 0.00 3.32
876 947 3.636300 AGGGAGAGACAAGAGATTGATCG 59.364 47.826 0.00 0.00 0.00 3.69
887 958 6.602278 TCGAATCTAATCTAGGGAGAGACAA 58.398 40.000 0.00 0.00 34.35 3.18
892 963 5.806818 ACGATCGAATCTAATCTAGGGAGA 58.193 41.667 24.34 0.00 35.71 3.71
916 987 7.661027 ACCAAAACCAATTCAATTCAATTCGAT 59.339 29.630 0.00 0.00 0.00 3.59
917 988 6.989169 ACCAAAACCAATTCAATTCAATTCGA 59.011 30.769 0.00 0.00 0.00 3.71
918 989 7.188468 ACCAAAACCAATTCAATTCAATTCG 57.812 32.000 0.00 0.00 0.00 3.34
919 990 7.861872 CCAACCAAAACCAATTCAATTCAATTC 59.138 33.333 0.00 0.00 0.00 2.17
920 991 7.559170 TCCAACCAAAACCAATTCAATTCAATT 59.441 29.630 0.00 0.00 0.00 2.32
991 1062 1.329906 GAGGAAATGCATCAGCGACAG 59.670 52.381 0.00 0.00 46.23 3.51
1012 1083 5.354513 GCCCTACCAAATTAAGAACAGAGTC 59.645 44.000 0.00 0.00 0.00 3.36
1025 1096 2.440247 GCCAGCGCCCTACCAAAT 60.440 61.111 2.29 0.00 0.00 2.32
1065 1136 0.038343 TCTTTAACGTCGTTCCGGGG 60.038 55.000 15.06 2.43 0.00 5.73
1071 1142 3.007182 TCCCTTCCATCTTTAACGTCGTT 59.993 43.478 15.97 15.97 0.00 3.85
1080 1151 1.340114 GCGTCCTTCCCTTCCATCTTT 60.340 52.381 0.00 0.00 0.00 2.52
1649 1989 4.096231 GGCAAAAAGTTTGACCAAAAGCAT 59.904 37.500 4.93 0.00 31.33 3.79
1654 1994 5.669164 ACTAGGCAAAAAGTTTGACCAAA 57.331 34.783 2.94 0.00 0.00 3.28
1665 2005 5.503002 GGGGACTATACAACTAGGCAAAAA 58.497 41.667 0.00 0.00 0.00 1.94
1666 2006 4.080186 GGGGGACTATACAACTAGGCAAAA 60.080 45.833 0.00 0.00 0.00 2.44
1684 2024 1.308326 CTTATTTTGGGCCGGGGGA 59.692 57.895 2.18 0.00 0.00 4.81
1691 2062 5.048153 GACTTGAGTCACTTATTTTGGGC 57.952 43.478 6.28 0.00 44.18 5.36
1730 2101 8.480501 ACCAACTTCAAGTCTGTACTAACTTTA 58.519 33.333 9.78 2.04 33.75 1.85
1731 2102 7.336396 ACCAACTTCAAGTCTGTACTAACTTT 58.664 34.615 9.78 0.00 33.75 2.66
1734 2105 7.655490 TCTACCAACTTCAAGTCTGTACTAAC 58.345 38.462 0.00 0.00 33.75 2.34
1735 2106 7.504911 ACTCTACCAACTTCAAGTCTGTACTAA 59.495 37.037 0.00 0.00 33.75 2.24
1736 2107 7.002879 ACTCTACCAACTTCAAGTCTGTACTA 58.997 38.462 0.00 0.00 33.75 1.82
1737 2108 5.834204 ACTCTACCAACTTCAAGTCTGTACT 59.166 40.000 0.00 0.00 37.65 2.73
1738 2109 6.086785 ACTCTACCAACTTCAAGTCTGTAC 57.913 41.667 0.00 0.00 0.00 2.90
1740 2111 5.834204 ACTACTCTACCAACTTCAAGTCTGT 59.166 40.000 0.00 0.00 0.00 3.41
1741 2112 6.334102 ACTACTCTACCAACTTCAAGTCTG 57.666 41.667 0.00 0.00 0.00 3.51
1742 2113 8.653036 AATACTACTCTACCAACTTCAAGTCT 57.347 34.615 0.00 0.00 0.00 3.24
1743 2114 9.708092 AAAATACTACTCTACCAACTTCAAGTC 57.292 33.333 0.00 0.00 0.00 3.01
1748 2119 9.924650 TCTCAAAAATACTACTCTACCAACTTC 57.075 33.333 0.00 0.00 0.00 3.01
1749 2120 9.930693 CTCTCAAAAATACTACTCTACCAACTT 57.069 33.333 0.00 0.00 0.00 2.66
1750 2121 9.310449 TCTCTCAAAAATACTACTCTACCAACT 57.690 33.333 0.00 0.00 0.00 3.16
1799 2172 6.770785 TCAGTGCAATAACCACTTTCTTACTT 59.229 34.615 0.00 0.00 41.34 2.24
1800 2173 6.296026 TCAGTGCAATAACCACTTTCTTACT 58.704 36.000 0.00 0.00 41.34 2.24
1801 2174 6.554334 TCAGTGCAATAACCACTTTCTTAC 57.446 37.500 0.00 0.00 41.34 2.34
1802 2175 6.770785 ACTTCAGTGCAATAACCACTTTCTTA 59.229 34.615 0.00 0.00 41.34 2.10
1830 2207 5.787380 CATAGATTAGCAGAGCACATACCA 58.213 41.667 0.00 0.00 0.00 3.25
1841 2218 7.134815 GGTAACACAATTGCATAGATTAGCAG 58.865 38.462 5.05 0.00 42.39 4.24
1938 2444 6.435904 ACAGTAGGCCATAAATAAAAGTTGCA 59.564 34.615 5.01 0.00 0.00 4.08
2016 2522 8.807118 TCACCCAAAGAGTCATATATATGTCTC 58.193 37.037 28.35 28.35 44.03 3.36
2017 2523 8.727100 TCACCCAAAGAGTCATATATATGTCT 57.273 34.615 18.61 18.61 35.36 3.41
2028 2534 6.724441 TCTTAGAACTATCACCCAAAGAGTCA 59.276 38.462 0.00 0.00 0.00 3.41
2182 2908 2.945668 GGAATACCAGCTGATCACCAAC 59.054 50.000 17.39 0.00 35.97 3.77
2257 2984 3.857383 GCACATGACGTACCTATAGGCAG 60.857 52.174 19.25 12.30 39.32 4.85
2358 3085 9.165035 CATTAAGGGAAATTAAACAATGCATGT 57.835 29.630 0.00 0.00 46.82 3.21
2571 3319 1.736612 CAGCTTTCTGGAGCCTCTTC 58.263 55.000 0.00 0.00 43.74 2.87
2613 3361 6.618287 TGATTTGCCAACCGAGATAATAAG 57.382 37.500 0.00 0.00 0.00 1.73
2661 3409 2.036733 TCGTTTCTTCCCACGTGAATCT 59.963 45.455 19.30 0.00 37.66 2.40
2682 3430 4.437682 TCCCTGTGAGAGTTCATTTTGT 57.562 40.909 0.00 0.00 35.39 2.83
2903 3651 4.908601 TCATTGTAAGAAGCCTCCTCAA 57.091 40.909 0.00 0.00 0.00 3.02
3162 3920 4.881850 GGACCAGAGTTTTGAGAAGTGAAA 59.118 41.667 0.00 0.00 0.00 2.69
3163 3921 4.451900 GGACCAGAGTTTTGAGAAGTGAA 58.548 43.478 0.00 0.00 0.00 3.18
3164 3922 3.492656 CGGACCAGAGTTTTGAGAAGTGA 60.493 47.826 0.00 0.00 0.00 3.41
3178 3936 1.593196 CTGAACAAAAGCGGACCAGA 58.407 50.000 0.00 0.00 0.00 3.86
3182 3940 2.215196 TGTACCTGAACAAAAGCGGAC 58.785 47.619 0.00 0.00 0.00 4.79
3265 4030 8.292444 TGAAGTGGATGGAATAAAATGGTAAG 57.708 34.615 0.00 0.00 0.00 2.34
3281 4046 7.713734 ATTGTCATCAAAGATTGAAGTGGAT 57.286 32.000 0.00 0.00 43.95 3.41
3282 4047 7.121168 GGTATTGTCATCAAAGATTGAAGTGGA 59.879 37.037 0.00 0.00 43.95 4.02
3285 4050 7.177878 AGGGTATTGTCATCAAAGATTGAAGT 58.822 34.615 0.00 0.00 43.95 3.01
3337 4102 3.782046 CCAGTAGGTGATTTGTAGGTCG 58.218 50.000 0.00 0.00 0.00 4.79
3446 4214 2.265526 AACCGGAAAGGAGGGAGTAT 57.734 50.000 9.46 0.00 45.00 2.12
3447 4215 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
3448 4216 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
3449 4217 3.071167 CCTATAAACCGGAAAGGAGGGAG 59.929 52.174 9.46 0.00 45.00 4.30
3450 4218 3.043418 CCTATAAACCGGAAAGGAGGGA 58.957 50.000 9.46 0.00 45.00 4.20
3451 4219 2.105993 CCCTATAAACCGGAAAGGAGGG 59.894 54.545 9.46 14.71 45.00 4.30
3452 4220 2.486727 GCCCTATAAACCGGAAAGGAGG 60.487 54.545 9.46 9.03 45.00 4.30
3453 4221 2.438392 AGCCCTATAAACCGGAAAGGAG 59.562 50.000 9.46 0.00 45.00 3.69
3454 4222 2.484602 AGCCCTATAAACCGGAAAGGA 58.515 47.619 9.46 0.00 45.00 3.36
3456 4224 5.866207 AGATAAGCCCTATAAACCGGAAAG 58.134 41.667 9.46 0.00 0.00 2.62
3457 4225 5.367352 TGAGATAAGCCCTATAAACCGGAAA 59.633 40.000 9.46 0.00 0.00 3.13
3458 4226 4.903049 TGAGATAAGCCCTATAAACCGGAA 59.097 41.667 9.46 0.00 0.00 4.30
3459 4227 4.485875 TGAGATAAGCCCTATAAACCGGA 58.514 43.478 9.46 0.00 0.00 5.14
3460 4228 4.884668 TGAGATAAGCCCTATAAACCGG 57.115 45.455 0.00 0.00 0.00 5.28
3461 4229 7.745620 ATTTTGAGATAAGCCCTATAAACCG 57.254 36.000 0.00 0.00 0.00 4.44
3467 4235 9.715119 AACCTAAAATTTTGAGATAAGCCCTAT 57.285 29.630 13.76 0.00 0.00 2.57
3468 4236 9.541884 AAACCTAAAATTTTGAGATAAGCCCTA 57.458 29.630 13.76 0.00 0.00 3.53
3469 4237 8.435931 AAACCTAAAATTTTGAGATAAGCCCT 57.564 30.769 13.76 0.00 0.00 5.19
3470 4238 7.764443 GGAAACCTAAAATTTTGAGATAAGCCC 59.236 37.037 13.76 1.06 0.00 5.19
3471 4239 8.703604 GGAAACCTAAAATTTTGAGATAAGCC 57.296 34.615 13.76 2.48 0.00 4.35
3501 4269 8.966868 GGGGAACAATCAAATTGAGACTTATAA 58.033 33.333 1.10 0.00 42.83 0.98
3502 4270 8.112822 TGGGGAACAATCAAATTGAGACTTATA 58.887 33.333 1.10 0.00 42.83 0.98
3503 4271 6.953520 TGGGGAACAATCAAATTGAGACTTAT 59.046 34.615 1.10 0.00 42.83 1.73
3504 4272 6.310941 TGGGGAACAATCAAATTGAGACTTA 58.689 36.000 1.10 0.00 42.83 2.24
3505 4273 5.147032 TGGGGAACAATCAAATTGAGACTT 58.853 37.500 1.10 0.00 42.83 3.01
3506 4274 4.739793 TGGGGAACAATCAAATTGAGACT 58.260 39.130 1.10 0.00 42.83 3.24
3507 4275 5.185635 TGATGGGGAACAATCAAATTGAGAC 59.814 40.000 1.10 0.00 42.83 3.36
3508 4276 5.331906 TGATGGGGAACAATCAAATTGAGA 58.668 37.500 1.10 0.00 42.83 3.27
3509 4277 5.664294 TGATGGGGAACAATCAAATTGAG 57.336 39.130 1.10 0.00 42.83 3.02
3510 4278 7.345132 ACATATGATGGGGAACAATCAAATTGA 59.655 33.333 10.38 0.00 37.90 2.57
3511 4279 7.502696 ACATATGATGGGGAACAATCAAATTG 58.497 34.615 10.38 0.00 39.31 2.32
3512 4280 7.679732 ACATATGATGGGGAACAATCAAATT 57.320 32.000 10.38 0.00 33.60 1.82
3513 4281 7.679732 AACATATGATGGGGAACAATCAAAT 57.320 32.000 10.38 0.00 33.60 2.32
3514 4282 8.601047 TTAACATATGATGGGGAACAATCAAA 57.399 30.769 10.38 0.00 33.60 2.69
3515 4283 8.058235 TCTTAACATATGATGGGGAACAATCAA 58.942 33.333 10.38 0.00 33.60 2.57
3516 4284 7.581814 TCTTAACATATGATGGGGAACAATCA 58.418 34.615 10.38 0.00 33.60 2.57
3517 4285 8.641498 ATCTTAACATATGATGGGGAACAATC 57.359 34.615 10.38 0.00 33.60 2.67
3518 4286 9.438163 AAATCTTAACATATGATGGGGAACAAT 57.562 29.630 10.38 0.00 33.60 2.71
3519 4287 8.837099 AAATCTTAACATATGATGGGGAACAA 57.163 30.769 10.38 0.00 33.60 2.83
3520 4288 8.058235 TGAAATCTTAACATATGATGGGGAACA 58.942 33.333 10.38 0.00 33.60 3.18
3521 4289 8.463930 TGAAATCTTAACATATGATGGGGAAC 57.536 34.615 10.38 0.00 33.60 3.62
3522 4290 9.486123 TTTGAAATCTTAACATATGATGGGGAA 57.514 29.630 10.38 0.00 33.60 3.97
3523 4291 9.135189 CTTTGAAATCTTAACATATGATGGGGA 57.865 33.333 10.38 1.59 33.60 4.81
3524 4292 8.917088 ACTTTGAAATCTTAACATATGATGGGG 58.083 33.333 10.38 0.00 33.60 4.96
3525 4293 9.740239 CACTTTGAAATCTTAACATATGATGGG 57.260 33.333 10.38 0.00 33.60 4.00
3526 4294 9.241317 GCACTTTGAAATCTTAACATATGATGG 57.759 33.333 10.38 0.00 33.60 3.51
3527 4295 9.791820 TGCACTTTGAAATCTTAACATATGATG 57.208 29.630 10.38 0.00 0.00 3.07
3539 4307 8.662141 GCAATGATTTAATGCACTTTGAAATCT 58.338 29.630 15.69 5.35 39.81 2.40
3540 4308 8.444715 TGCAATGATTTAATGCACTTTGAAATC 58.555 29.630 0.00 1.22 44.52 2.17
3541 4309 8.325421 TGCAATGATTTAATGCACTTTGAAAT 57.675 26.923 0.00 0.00 44.52 2.17
3542 4310 7.725818 TGCAATGATTTAATGCACTTTGAAA 57.274 28.000 0.00 0.00 44.52 2.69
3561 4329 3.544684 TGTCTTAATCCTCGCATGCAAT 58.455 40.909 19.57 2.19 0.00 3.56
3562 4330 2.984562 TGTCTTAATCCTCGCATGCAA 58.015 42.857 19.57 0.00 0.00 4.08
3563 4331 2.689553 TGTCTTAATCCTCGCATGCA 57.310 45.000 19.57 4.02 0.00 3.96
3564 4332 4.098416 GTTTTGTCTTAATCCTCGCATGC 58.902 43.478 7.91 7.91 0.00 4.06
3565 4333 5.122239 TCAGTTTTGTCTTAATCCTCGCATG 59.878 40.000 0.00 0.00 0.00 4.06
3566 4334 5.122396 GTCAGTTTTGTCTTAATCCTCGCAT 59.878 40.000 0.00 0.00 0.00 4.73
3567 4335 4.451096 GTCAGTTTTGTCTTAATCCTCGCA 59.549 41.667 0.00 0.00 0.00 5.10
3568 4336 4.142881 GGTCAGTTTTGTCTTAATCCTCGC 60.143 45.833 0.00 0.00 0.00 5.03
3569 4337 4.994852 TGGTCAGTTTTGTCTTAATCCTCG 59.005 41.667 0.00 0.00 0.00 4.63
3570 4338 6.877611 TTGGTCAGTTTTGTCTTAATCCTC 57.122 37.500 0.00 0.00 0.00 3.71
3571 4339 6.294731 GCATTGGTCAGTTTTGTCTTAATCCT 60.295 38.462 0.00 0.00 0.00 3.24
3572 4340 5.863935 GCATTGGTCAGTTTTGTCTTAATCC 59.136 40.000 0.00 0.00 0.00 3.01
3573 4341 6.446318 TGCATTGGTCAGTTTTGTCTTAATC 58.554 36.000 0.00 0.00 0.00 1.75
3574 4342 6.403866 TGCATTGGTCAGTTTTGTCTTAAT 57.596 33.333 0.00 0.00 0.00 1.40
3575 4343 5.843673 TGCATTGGTCAGTTTTGTCTTAA 57.156 34.783 0.00 0.00 0.00 1.85
3576 4344 5.301551 ACATGCATTGGTCAGTTTTGTCTTA 59.698 36.000 0.00 0.00 0.00 2.10
3577 4345 4.099881 ACATGCATTGGTCAGTTTTGTCTT 59.900 37.500 0.00 0.00 0.00 3.01
3578 4346 3.638160 ACATGCATTGGTCAGTTTTGTCT 59.362 39.130 0.00 0.00 0.00 3.41
3579 4347 3.981211 ACATGCATTGGTCAGTTTTGTC 58.019 40.909 0.00 0.00 0.00 3.18
3580 4348 4.584325 AGTACATGCATTGGTCAGTTTTGT 59.416 37.500 0.00 0.00 0.00 2.83
3581 4349 5.125100 AGTACATGCATTGGTCAGTTTTG 57.875 39.130 0.00 0.00 0.00 2.44
3582 4350 5.789643 AAGTACATGCATTGGTCAGTTTT 57.210 34.783 0.00 0.00 0.00 2.43
3583 4351 5.789643 AAAGTACATGCATTGGTCAGTTT 57.210 34.783 0.00 0.00 0.00 2.66
3584 4352 6.625740 GCATAAAGTACATGCATTGGTCAGTT 60.626 38.462 10.82 0.00 46.47 3.16
3585 4353 5.163622 GCATAAAGTACATGCATTGGTCAGT 60.164 40.000 10.82 0.00 46.47 3.41
3586 4354 5.276270 GCATAAAGTACATGCATTGGTCAG 58.724 41.667 10.82 0.00 46.47 3.51
3587 4355 5.247507 GCATAAAGTACATGCATTGGTCA 57.752 39.130 10.82 0.00 46.47 4.02
3617 4385 8.933807 TGTGTTTCCAATGCATTAATTGTAATG 58.066 29.630 12.53 0.00 46.44 1.90
3618 4386 9.499479 TTGTGTTTCCAATGCATTAATTGTAAT 57.501 25.926 12.53 0.00 36.06 1.89
3619 4387 8.893219 TTGTGTTTCCAATGCATTAATTGTAA 57.107 26.923 12.53 0.00 36.06 2.41
3620 4388 9.499479 AATTGTGTTTCCAATGCATTAATTGTA 57.501 25.926 12.53 0.00 36.06 2.41
3621 4389 7.982761 ATTGTGTTTCCAATGCATTAATTGT 57.017 28.000 12.53 0.00 36.06 2.71
3622 4390 9.680315 AAAATTGTGTTTCCAATGCATTAATTG 57.320 25.926 12.53 0.61 35.30 2.32
3623 4391 9.680315 CAAAATTGTGTTTCCAATGCATTAATT 57.320 25.926 12.53 8.93 35.30 1.40
3624 4392 8.848182 ACAAAATTGTGTTTCCAATGCATTAAT 58.152 25.926 12.53 2.81 40.49 1.40
3625 4393 8.218338 ACAAAATTGTGTTTCCAATGCATTAA 57.782 26.923 12.53 0.47 40.49 1.40
3626 4394 7.798596 ACAAAATTGTGTTTCCAATGCATTA 57.201 28.000 12.53 0.00 40.49 1.90
3627 4395 6.696441 ACAAAATTGTGTTTCCAATGCATT 57.304 29.167 5.99 5.99 40.49 3.56
3641 4409 4.142271 TGCTCGTTTTCCTCACAAAATTGT 60.142 37.500 0.00 0.00 43.36 2.71
3642 4410 4.207019 GTGCTCGTTTTCCTCACAAAATTG 59.793 41.667 0.00 0.00 0.00 2.32
3643 4411 4.142271 TGTGCTCGTTTTCCTCACAAAATT 60.142 37.500 0.00 0.00 35.08 1.82
3644 4412 3.380004 TGTGCTCGTTTTCCTCACAAAAT 59.620 39.130 0.00 0.00 35.08 1.82
3645 4413 2.750166 TGTGCTCGTTTTCCTCACAAAA 59.250 40.909 0.00 0.00 35.08 2.44
3646 4414 2.360844 TGTGCTCGTTTTCCTCACAAA 58.639 42.857 0.00 0.00 35.08 2.83
3647 4415 2.031258 TGTGCTCGTTTTCCTCACAA 57.969 45.000 0.00 0.00 35.08 3.33
3648 4416 2.254546 ATGTGCTCGTTTTCCTCACA 57.745 45.000 0.00 0.00 41.18 3.58
3649 4417 4.742438 TTAATGTGCTCGTTTTCCTCAC 57.258 40.909 0.00 0.00 0.00 3.51
3650 4418 5.240623 ACAATTAATGTGCTCGTTTTCCTCA 59.759 36.000 0.00 0.00 41.93 3.86
3651 4419 5.699839 ACAATTAATGTGCTCGTTTTCCTC 58.300 37.500 0.00 0.00 41.93 3.71
3652 4420 5.705609 ACAATTAATGTGCTCGTTTTCCT 57.294 34.783 0.00 0.00 41.93 3.36
3653 4421 6.763303 AAACAATTAATGTGCTCGTTTTCC 57.237 33.333 0.00 0.00 42.99 3.13
3694 4462 8.695456 GGTAAATGATGAGTGGTGGAATATTTT 58.305 33.333 0.00 0.00 0.00 1.82
3695 4463 8.061304 AGGTAAATGATGAGTGGTGGAATATTT 58.939 33.333 0.00 0.00 0.00 1.40
3696 4464 7.586349 AGGTAAATGATGAGTGGTGGAATATT 58.414 34.615 0.00 0.00 0.00 1.28
3697 4465 7.154191 AGGTAAATGATGAGTGGTGGAATAT 57.846 36.000 0.00 0.00 0.00 1.28
3698 4466 6.575244 AGGTAAATGATGAGTGGTGGAATA 57.425 37.500 0.00 0.00 0.00 1.75
3699 4467 5.456921 AGGTAAATGATGAGTGGTGGAAT 57.543 39.130 0.00 0.00 0.00 3.01
3700 4468 4.927267 AGGTAAATGATGAGTGGTGGAA 57.073 40.909 0.00 0.00 0.00 3.53
3701 4469 4.927267 AAGGTAAATGATGAGTGGTGGA 57.073 40.909 0.00 0.00 0.00 4.02
3702 4470 5.745227 ACTAAGGTAAATGATGAGTGGTGG 58.255 41.667 0.00 0.00 0.00 4.61
3703 4471 6.094048 CCAACTAAGGTAAATGATGAGTGGTG 59.906 42.308 0.00 0.00 0.00 4.17
3704 4472 6.180472 CCAACTAAGGTAAATGATGAGTGGT 58.820 40.000 0.00 0.00 0.00 4.16
3705 4473 6.094048 CACCAACTAAGGTAAATGATGAGTGG 59.906 42.308 0.00 0.00 40.77 4.00
3706 4474 6.878923 TCACCAACTAAGGTAAATGATGAGTG 59.121 38.462 0.00 0.00 40.77 3.51
3707 4475 7.016153 TCACCAACTAAGGTAAATGATGAGT 57.984 36.000 0.00 0.00 40.77 3.41
3708 4476 7.331026 TCTCACCAACTAAGGTAAATGATGAG 58.669 38.462 0.00 0.00 40.77 2.90
3709 4477 7.252612 TCTCACCAACTAAGGTAAATGATGA 57.747 36.000 0.00 0.00 40.77 2.92
3710 4478 8.511604 AATCTCACCAACTAAGGTAAATGATG 57.488 34.615 0.00 0.00 40.77 3.07
3711 4479 9.533831 AAAATCTCACCAACTAAGGTAAATGAT 57.466 29.630 0.00 0.00 40.77 2.45
3712 4480 8.934023 AAAATCTCACCAACTAAGGTAAATGA 57.066 30.769 0.00 0.00 40.77 2.57
3713 4481 9.410556 CAAAAATCTCACCAACTAAGGTAAATG 57.589 33.333 0.00 0.00 40.77 2.32
3714 4482 9.362151 TCAAAAATCTCACCAACTAAGGTAAAT 57.638 29.630 0.00 0.00 40.77 1.40
3715 4483 8.754991 TCAAAAATCTCACCAACTAAGGTAAA 57.245 30.769 0.00 0.00 40.77 2.01
3716 4484 8.754991 TTCAAAAATCTCACCAACTAAGGTAA 57.245 30.769 0.00 0.00 40.77 2.85
3717 4485 8.934023 ATTCAAAAATCTCACCAACTAAGGTA 57.066 30.769 0.00 0.00 40.77 3.08
3718 4486 7.839680 ATTCAAAAATCTCACCAACTAAGGT 57.160 32.000 0.00 0.00 44.48 3.50
3719 4487 8.359642 TCAATTCAAAAATCTCACCAACTAAGG 58.640 33.333 0.00 0.00 0.00 2.69
3720 4488 9.403110 CTCAATTCAAAAATCTCACCAACTAAG 57.597 33.333 0.00 0.00 0.00 2.18
3721 4489 7.867403 GCTCAATTCAAAAATCTCACCAACTAA 59.133 33.333 0.00 0.00 0.00 2.24
3722 4490 7.370383 GCTCAATTCAAAAATCTCACCAACTA 58.630 34.615 0.00 0.00 0.00 2.24
3723 4491 6.218746 GCTCAATTCAAAAATCTCACCAACT 58.781 36.000 0.00 0.00 0.00 3.16
3724 4492 5.406477 GGCTCAATTCAAAAATCTCACCAAC 59.594 40.000 0.00 0.00 0.00 3.77
3725 4493 5.511202 GGGCTCAATTCAAAAATCTCACCAA 60.511 40.000 0.00 0.00 0.00 3.67
3726 4494 4.021192 GGGCTCAATTCAAAAATCTCACCA 60.021 41.667 0.00 0.00 0.00 4.17
3727 4495 4.221482 AGGGCTCAATTCAAAAATCTCACC 59.779 41.667 0.00 0.00 0.00 4.02
3728 4496 5.397142 AGGGCTCAATTCAAAAATCTCAC 57.603 39.130 0.00 0.00 0.00 3.51
3729 4497 8.821686 TTATAGGGCTCAATTCAAAAATCTCA 57.178 30.769 0.00 0.00 0.00 3.27
3730 4498 9.521503 GTTTATAGGGCTCAATTCAAAAATCTC 57.478 33.333 0.00 0.00 0.00 2.75
3731 4499 8.478066 GGTTTATAGGGCTCAATTCAAAAATCT 58.522 33.333 0.00 0.00 0.00 2.40
3732 4500 7.435192 CGGTTTATAGGGCTCAATTCAAAAATC 59.565 37.037 0.00 0.00 0.00 2.17
3733 4501 7.264947 CGGTTTATAGGGCTCAATTCAAAAAT 58.735 34.615 0.00 0.00 0.00 1.82
3734 4502 6.350612 CCGGTTTATAGGGCTCAATTCAAAAA 60.351 38.462 0.00 0.00 0.00 1.94
3735 4503 5.126384 CCGGTTTATAGGGCTCAATTCAAAA 59.874 40.000 0.00 0.00 0.00 2.44
3736 4504 4.642885 CCGGTTTATAGGGCTCAATTCAAA 59.357 41.667 0.00 0.00 0.00 2.69
3737 4505 4.080243 TCCGGTTTATAGGGCTCAATTCAA 60.080 41.667 0.00 0.00 0.00 2.69
3738 4506 3.456644 TCCGGTTTATAGGGCTCAATTCA 59.543 43.478 0.00 0.00 0.00 2.57
3739 4507 4.081322 TCCGGTTTATAGGGCTCAATTC 57.919 45.455 0.00 0.00 0.00 2.17
3740 4508 4.513406 TTCCGGTTTATAGGGCTCAATT 57.487 40.909 0.00 0.00 0.00 2.32
3741 4509 4.461198 CTTTCCGGTTTATAGGGCTCAAT 58.539 43.478 0.00 0.00 0.00 2.57
3742 4510 3.371166 CCTTTCCGGTTTATAGGGCTCAA 60.371 47.826 0.00 0.00 0.00 3.02
3743 4511 2.171870 CCTTTCCGGTTTATAGGGCTCA 59.828 50.000 0.00 0.00 0.00 4.26
3744 4512 2.436911 TCCTTTCCGGTTTATAGGGCTC 59.563 50.000 0.00 0.00 0.00 4.70
3745 4513 2.438392 CTCCTTTCCGGTTTATAGGGCT 59.562 50.000 0.00 0.00 0.00 5.19
3746 4514 2.486727 CCTCCTTTCCGGTTTATAGGGC 60.487 54.545 0.00 0.00 0.00 5.19
3747 4515 2.105993 CCCTCCTTTCCGGTTTATAGGG 59.894 54.545 16.03 16.03 36.05 3.53
3748 4516 3.043418 TCCCTCCTTTCCGGTTTATAGG 58.957 50.000 0.00 4.62 0.00 2.57
3749 4517 3.710165 ACTCCCTCCTTTCCGGTTTATAG 59.290 47.826 0.00 0.00 0.00 1.31
3750 4518 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
3751 4519 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
3752 4520 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
3753 4521 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
3754 4522 2.265526 ATACTCCCTCCTTTCCGGTT 57.734 50.000 0.00 0.00 0.00 4.44
3755 4523 2.265526 AATACTCCCTCCTTTCCGGT 57.734 50.000 0.00 0.00 0.00 5.28
3756 4524 3.573695 TCTAATACTCCCTCCTTTCCGG 58.426 50.000 0.00 0.00 0.00 5.14
3757 4525 6.912951 TTATCTAATACTCCCTCCTTTCCG 57.087 41.667 0.00 0.00 0.00 4.30
3758 4526 8.715842 AGTTTTATCTAATACTCCCTCCTTTCC 58.284 37.037 0.00 0.00 0.00 3.13
3847 4619 2.541588 CCGAGTCTGCAAAACCAACAAG 60.542 50.000 0.00 0.00 0.00 3.16
3848 4620 1.403679 CCGAGTCTGCAAAACCAACAA 59.596 47.619 0.00 0.00 0.00 2.83
3849 4621 1.021202 CCGAGTCTGCAAAACCAACA 58.979 50.000 0.00 0.00 0.00 3.33
3972 4744 7.445121 ACTCTGAGTGTGTTGAATCTTCATTA 58.555 34.615 10.00 0.00 37.00 1.90
4258 5030 5.063204 CCAGATGCCGTCCTAAAAATGATA 58.937 41.667 0.00 0.00 0.00 2.15
4267 5039 0.616395 TTGTCCCAGATGCCGTCCTA 60.616 55.000 0.00 0.00 0.00 2.94
4273 5045 0.107703 TCGTCATTGTCCCAGATGCC 60.108 55.000 0.00 0.00 0.00 4.40
4274 5046 1.600957 CATCGTCATTGTCCCAGATGC 59.399 52.381 0.00 0.00 30.84 3.91
4293 5065 5.101648 TGCATAAAGTGGAGTCATCATCA 57.898 39.130 0.00 0.00 0.00 3.07
4304 5076 4.442192 GGAGACTAGGACTGCATAAAGTGG 60.442 50.000 0.00 0.00 0.00 4.00
4307 5079 3.243569 CGGGAGACTAGGACTGCATAAAG 60.244 52.174 11.32 0.00 0.00 1.85
4339 5111 8.571461 TTCTGCTTCATGAATAATGTTTCTCT 57.429 30.769 8.96 0.00 37.56 3.10
4473 5254 9.638239 GATAGGACAAAAGCAATCAATTAACAA 57.362 29.630 0.00 0.00 0.00 2.83
4571 5352 6.703165 AGCAAAGAGAAATTTCATGGTTGAAC 59.297 34.615 19.99 7.03 41.50 3.18
4659 5440 3.904136 AAAGGAAGTTTGCATGTCTCG 57.096 42.857 0.00 0.00 0.00 4.04
5030 5824 7.667043 TGCGGTAAAATCCTATGCTAAATAG 57.333 36.000 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.