Multiple sequence alignment - TraesCS7D01G373300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G373300 chr7D 100.000 4023 0 0 1 4023 483917273 483921295 0.000000e+00 7430.0
1 TraesCS7D01G373300 chr7D 93.333 75 2 2 2252 2324 46087831 46087758 1.530000e-19 108.0
2 TraesCS7D01G373300 chr7A 94.557 3601 150 27 441 4023 550297012 550300584 0.000000e+00 5522.0
3 TraesCS7D01G373300 chr7B 91.459 3618 162 41 443 4023 509563075 509566582 0.000000e+00 4833.0
4 TraesCS7D01G373300 chr6A 77.778 324 55 11 1621 1940 208118088 208118398 2.470000e-42 183.0
5 TraesCS7D01G373300 chr6D 76.852 324 58 11 1621 1940 154596876 154596566 2.490000e-37 167.0
6 TraesCS7D01G373300 chr6D 92.000 75 6 0 222 296 164765777 164765851 5.500000e-19 106.0
7 TraesCS7D01G373300 chr6B 77.199 307 53 12 1638 1940 278127440 278127733 3.220000e-36 163.0
8 TraesCS7D01G373300 chr5A 98.611 72 1 0 227 298 299103083 299103012 1.170000e-25 128.0
9 TraesCS7D01G373300 chr5A 91.250 80 5 2 218 296 606304816 606304894 1.530000e-19 108.0
10 TraesCS7D01G373300 chr1D 97.260 73 2 0 224 296 76887052 76886980 1.520000e-24 124.0
11 TraesCS7D01G373300 chr1D 79.532 171 19 9 443 609 57921684 57921526 1.530000e-19 108.0
12 TraesCS7D01G373300 chr1D 92.000 75 3 2 2252 2324 42092818 42092745 7.110000e-18 102.0
13 TraesCS7D01G373300 chr1A 95.890 73 3 0 224 296 567486081 567486009 7.060000e-23 119.0
14 TraesCS7D01G373300 chr1A 90.789 76 6 1 221 296 328366431 328366357 2.560000e-17 100.0
15 TraesCS7D01G373300 chr2B 93.421 76 5 0 221 296 468460517 468460592 3.290000e-21 113.0
16 TraesCS7D01G373300 chr4B 94.366 71 4 0 226 296 574670933 574670863 4.250000e-20 110.0
17 TraesCS7D01G373300 chr2D 92.000 75 6 0 222 296 337544582 337544508 5.500000e-19 106.0
18 TraesCS7D01G373300 chr2D 93.023 43 3 0 567 609 405397231 405397273 3.360000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G373300 chr7D 483917273 483921295 4022 False 7430 7430 100.000 1 4023 1 chr7D.!!$F1 4022
1 TraesCS7D01G373300 chr7A 550297012 550300584 3572 False 5522 5522 94.557 441 4023 1 chr7A.!!$F1 3582
2 TraesCS7D01G373300 chr7B 509563075 509566582 3507 False 4833 4833 91.459 443 4023 1 chr7B.!!$F1 3580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.025128 GCGGCGTTTCTTCTTCGATC 59.975 55.0 9.37 0.0 0.00 3.69 F
128 129 0.031917 TCCATAGGGCGGTGAGGTTA 60.032 55.0 0.00 0.0 0.00 2.85 F
205 206 0.094558 TCAAATGCGACGATTGCGAC 59.905 50.0 0.00 0.0 41.64 5.19 F
206 207 0.095245 CAAATGCGACGATTGCGACT 59.905 50.0 0.00 0.0 41.64 4.18 F
896 915 0.105709 CCTTCCTCCTCCTCCTCCTC 60.106 65.0 0.00 0.0 0.00 3.71 F
897 916 0.105709 CTTCCTCCTCCTCCTCCTCC 60.106 65.0 0.00 0.0 0.00 4.30 F
2204 2234 0.250727 GCACACTGGGGCTTCTAACA 60.251 55.0 0.00 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1619 1649 2.196295 AGCTTCACGTATTCGAGAGC 57.804 50.000 0.00 4.9 37.85 4.09 R
2049 2079 6.070824 TGACAGAGCTCCAATAATCAGTTGTA 60.071 38.462 10.93 0.0 0.00 2.41 R
2204 2234 6.095580 TCAGAACTATTAGTTGTCGCAGAGAT 59.904 38.462 13.69 0.0 38.80 2.75 R
2355 2385 1.400142 CACGGTGTCACTGCAAAGAAA 59.600 47.619 11.91 0.0 0.00 2.52 R
2405 2435 4.141914 ACATGCTACAGAAGTACTAAGCCC 60.142 45.833 0.00 0.0 36.55 5.19 R
2720 2750 5.057149 GTGTACCCTAGTTCCATATGCAAG 58.943 45.833 0.00 0.0 0.00 4.01 R
3635 3680 1.475751 GGCATCTGGGACAATGACGAT 60.476 52.381 0.00 0.0 38.70 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.202797 CACTCAGACGGATGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
18 19 4.148825 ACTCAGACGGATGGCGGC 62.149 66.667 0.00 0.00 0.00 6.53
22 23 4.388499 AGACGGATGGCGGCGTTT 62.388 61.111 9.37 0.00 0.00 3.60
23 24 3.861263 GACGGATGGCGGCGTTTC 61.861 66.667 9.37 1.15 0.00 2.78
24 25 4.388499 ACGGATGGCGGCGTTTCT 62.388 61.111 9.37 0.00 0.00 2.52
25 26 3.124921 CGGATGGCGGCGTTTCTT 61.125 61.111 9.37 0.00 0.00 2.52
26 27 2.791927 GGATGGCGGCGTTTCTTC 59.208 61.111 9.37 6.57 0.00 2.87
27 28 1.745489 GGATGGCGGCGTTTCTTCT 60.745 57.895 9.37 0.00 0.00 2.85
28 29 1.305930 GGATGGCGGCGTTTCTTCTT 61.306 55.000 9.37 0.00 0.00 2.52
29 30 0.097150 GATGGCGGCGTTTCTTCTTC 59.903 55.000 9.37 0.00 0.00 2.87
30 31 1.635663 ATGGCGGCGTTTCTTCTTCG 61.636 55.000 9.37 0.00 0.00 3.79
31 32 2.025418 GGCGGCGTTTCTTCTTCGA 61.025 57.895 9.37 0.00 0.00 3.71
32 33 1.359459 GGCGGCGTTTCTTCTTCGAT 61.359 55.000 9.37 0.00 0.00 3.59
33 34 0.025128 GCGGCGTTTCTTCTTCGATC 59.975 55.000 9.37 0.00 0.00 3.69
34 35 1.630148 CGGCGTTTCTTCTTCGATCT 58.370 50.000 0.00 0.00 0.00 2.75
35 36 1.993370 CGGCGTTTCTTCTTCGATCTT 59.007 47.619 0.00 0.00 0.00 2.40
36 37 2.028165 CGGCGTTTCTTCTTCGATCTTC 59.972 50.000 0.00 0.00 0.00 2.87
37 38 2.348971 GGCGTTTCTTCTTCGATCTTCC 59.651 50.000 0.00 0.00 0.00 3.46
38 39 2.028165 GCGTTTCTTCTTCGATCTTCCG 59.972 50.000 0.00 0.00 0.00 4.30
39 40 2.599082 CGTTTCTTCTTCGATCTTCCGG 59.401 50.000 0.00 0.00 0.00 5.14
40 41 2.930682 GTTTCTTCTTCGATCTTCCGGG 59.069 50.000 0.00 0.00 0.00 5.73
41 42 0.460311 TCTTCTTCGATCTTCCGGGC 59.540 55.000 0.00 0.00 0.00 6.13
42 43 0.461961 CTTCTTCGATCTTCCGGGCT 59.538 55.000 0.00 0.00 0.00 5.19
43 44 0.902531 TTCTTCGATCTTCCGGGCTT 59.097 50.000 0.00 0.00 0.00 4.35
44 45 1.771565 TCTTCGATCTTCCGGGCTTA 58.228 50.000 0.00 0.00 0.00 3.09
45 46 2.317040 TCTTCGATCTTCCGGGCTTAT 58.683 47.619 0.00 0.00 0.00 1.73
46 47 3.493334 TCTTCGATCTTCCGGGCTTATA 58.507 45.455 0.00 0.00 0.00 0.98
47 48 4.087182 TCTTCGATCTTCCGGGCTTATAT 58.913 43.478 0.00 0.00 0.00 0.86
48 49 4.158025 TCTTCGATCTTCCGGGCTTATATC 59.842 45.833 0.00 0.00 0.00 1.63
49 50 2.758979 TCGATCTTCCGGGCTTATATCC 59.241 50.000 0.00 0.00 0.00 2.59
50 51 2.761208 CGATCTTCCGGGCTTATATCCT 59.239 50.000 0.00 0.00 0.00 3.24
51 52 3.181485 CGATCTTCCGGGCTTATATCCTC 60.181 52.174 0.00 0.00 0.00 3.71
52 53 3.544698 TCTTCCGGGCTTATATCCTCT 57.455 47.619 0.00 0.00 0.00 3.69
53 54 3.165875 TCTTCCGGGCTTATATCCTCTG 58.834 50.000 0.00 0.00 0.00 3.35
54 55 1.267121 TCCGGGCTTATATCCTCTGC 58.733 55.000 0.00 0.00 0.00 4.26
55 56 0.976641 CCGGGCTTATATCCTCTGCA 59.023 55.000 0.00 0.00 0.00 4.41
56 57 1.556911 CCGGGCTTATATCCTCTGCAT 59.443 52.381 0.00 0.00 0.00 3.96
57 58 2.625737 CGGGCTTATATCCTCTGCATG 58.374 52.381 0.00 0.00 0.00 4.06
58 59 2.027745 CGGGCTTATATCCTCTGCATGT 60.028 50.000 0.00 0.00 0.00 3.21
59 60 3.557898 CGGGCTTATATCCTCTGCATGTT 60.558 47.826 0.00 0.00 0.00 2.71
60 61 4.006319 GGGCTTATATCCTCTGCATGTTC 58.994 47.826 0.00 0.00 0.00 3.18
61 62 3.681897 GGCTTATATCCTCTGCATGTTCG 59.318 47.826 0.00 0.00 0.00 3.95
62 63 4.310769 GCTTATATCCTCTGCATGTTCGT 58.689 43.478 0.00 0.00 0.00 3.85
63 64 4.752101 GCTTATATCCTCTGCATGTTCGTT 59.248 41.667 0.00 0.00 0.00 3.85
64 65 5.107298 GCTTATATCCTCTGCATGTTCGTTC 60.107 44.000 0.00 0.00 0.00 3.95
65 66 1.645034 ATCCTCTGCATGTTCGTTCG 58.355 50.000 0.00 0.00 0.00 3.95
66 67 0.317160 TCCTCTGCATGTTCGTTCGT 59.683 50.000 0.00 0.00 0.00 3.85
67 68 1.148310 CCTCTGCATGTTCGTTCGTT 58.852 50.000 0.00 0.00 0.00 3.85
68 69 1.126846 CCTCTGCATGTTCGTTCGTTC 59.873 52.381 0.00 0.00 0.00 3.95
69 70 0.781787 TCTGCATGTTCGTTCGTTCG 59.218 50.000 0.00 0.00 0.00 3.95
70 71 0.179250 CTGCATGTTCGTTCGTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
71 72 0.597898 TGCATGTTCGTTCGTTCGGA 60.598 50.000 0.00 0.00 0.00 4.55
72 73 0.509499 GCATGTTCGTTCGTTCGGAA 59.491 50.000 0.00 0.00 0.00 4.30
73 74 1.461888 GCATGTTCGTTCGTTCGGAAG 60.462 52.381 0.00 0.00 34.69 3.46
74 75 1.790623 CATGTTCGTTCGTTCGGAAGT 59.209 47.619 0.00 0.00 34.69 3.01
75 76 2.772568 TGTTCGTTCGTTCGGAAGTA 57.227 45.000 0.00 0.00 34.69 2.24
76 77 2.653890 TGTTCGTTCGTTCGGAAGTAG 58.346 47.619 0.00 0.00 34.69 2.57
77 78 2.033299 TGTTCGTTCGTTCGGAAGTAGT 59.967 45.455 0.00 0.00 34.69 2.73
78 79 2.601481 TCGTTCGTTCGGAAGTAGTC 57.399 50.000 0.00 0.00 34.69 2.59
79 80 1.136252 TCGTTCGTTCGGAAGTAGTCG 60.136 52.381 0.00 0.00 34.69 4.18
80 81 1.136252 CGTTCGTTCGGAAGTAGTCGA 60.136 52.381 0.00 0.00 34.69 4.20
81 82 2.237526 GTTCGTTCGGAAGTAGTCGAC 58.762 52.381 7.70 7.70 34.69 4.20
82 83 1.511850 TCGTTCGGAAGTAGTCGACA 58.488 50.000 19.50 0.48 34.99 4.35
83 84 1.462283 TCGTTCGGAAGTAGTCGACAG 59.538 52.381 19.50 0.00 34.99 3.51
84 85 1.462283 CGTTCGGAAGTAGTCGACAGA 59.538 52.381 19.50 1.63 34.99 3.41
85 86 2.474196 CGTTCGGAAGTAGTCGACAGAG 60.474 54.545 19.50 1.78 34.99 3.35
86 87 1.085091 TCGGAAGTAGTCGACAGAGC 58.915 55.000 19.50 4.50 0.00 4.09
87 88 1.088306 CGGAAGTAGTCGACAGAGCT 58.912 55.000 19.50 6.84 0.00 4.09
88 89 1.062880 CGGAAGTAGTCGACAGAGCTC 59.937 57.143 19.50 5.27 0.00 4.09
89 90 1.402613 GGAAGTAGTCGACAGAGCTCC 59.597 57.143 19.50 12.46 0.00 4.70
90 91 1.062880 GAAGTAGTCGACAGAGCTCCG 59.937 57.143 19.50 7.36 0.00 4.63
91 92 0.249676 AGTAGTCGACAGAGCTCCGA 59.750 55.000 19.50 9.90 0.00 4.55
94 95 4.320910 TCGACAGAGCTCCGACAT 57.679 55.556 10.93 0.00 0.00 3.06
95 96 3.471354 TCGACAGAGCTCCGACATA 57.529 52.632 10.93 0.00 0.00 2.29
96 97 1.968704 TCGACAGAGCTCCGACATAT 58.031 50.000 10.93 0.00 0.00 1.78
97 98 3.121738 TCGACAGAGCTCCGACATATA 57.878 47.619 10.93 0.00 0.00 0.86
98 99 3.676093 TCGACAGAGCTCCGACATATAT 58.324 45.455 10.93 0.00 0.00 0.86
99 100 4.072839 TCGACAGAGCTCCGACATATATT 58.927 43.478 10.93 0.00 0.00 1.28
100 101 4.519350 TCGACAGAGCTCCGACATATATTT 59.481 41.667 10.93 0.00 0.00 1.40
101 102 4.854291 CGACAGAGCTCCGACATATATTTC 59.146 45.833 10.93 0.00 0.00 2.17
102 103 5.335269 CGACAGAGCTCCGACATATATTTCT 60.335 44.000 10.93 0.00 0.00 2.52
103 104 5.777802 ACAGAGCTCCGACATATATTTCTG 58.222 41.667 10.93 0.00 36.50 3.02
104 105 5.303078 ACAGAGCTCCGACATATATTTCTGT 59.697 40.000 10.93 0.00 38.24 3.41
105 106 5.861251 CAGAGCTCCGACATATATTTCTGTC 59.139 44.000 10.93 0.00 38.69 3.51
115 116 8.903570 GACATATATTTCTGTCGTCTCCATAG 57.096 38.462 0.00 0.00 33.14 2.23
116 117 7.831753 ACATATATTTCTGTCGTCTCCATAGG 58.168 38.462 0.00 0.00 0.00 2.57
117 118 5.730296 ATATTTCTGTCGTCTCCATAGGG 57.270 43.478 0.00 0.00 0.00 3.53
118 119 1.112113 TTCTGTCGTCTCCATAGGGC 58.888 55.000 0.00 0.00 0.00 5.19
119 120 1.101635 TCTGTCGTCTCCATAGGGCG 61.102 60.000 0.00 0.00 0.00 6.13
120 121 2.076622 CTGTCGTCTCCATAGGGCGG 62.077 65.000 0.00 0.00 0.00 6.13
121 122 2.125961 GTCGTCTCCATAGGGCGGT 61.126 63.158 0.00 0.00 0.00 5.68
122 123 2.125326 TCGTCTCCATAGGGCGGTG 61.125 63.158 0.00 0.00 0.00 4.94
123 124 2.125326 CGTCTCCATAGGGCGGTGA 61.125 63.158 0.00 0.00 0.00 4.02
124 125 1.742768 GTCTCCATAGGGCGGTGAG 59.257 63.158 0.00 0.00 0.00 3.51
125 126 1.457643 TCTCCATAGGGCGGTGAGG 60.458 63.158 0.00 0.00 0.00 3.86
126 127 1.762460 CTCCATAGGGCGGTGAGGT 60.762 63.158 0.00 0.00 0.00 3.85
127 128 1.306654 TCCATAGGGCGGTGAGGTT 60.307 57.895 0.00 0.00 0.00 3.50
128 129 0.031917 TCCATAGGGCGGTGAGGTTA 60.032 55.000 0.00 0.00 0.00 2.85
129 130 0.393077 CCATAGGGCGGTGAGGTTAG 59.607 60.000 0.00 0.00 0.00 2.34
130 131 1.120530 CATAGGGCGGTGAGGTTAGT 58.879 55.000 0.00 0.00 0.00 2.24
131 132 1.120530 ATAGGGCGGTGAGGTTAGTG 58.879 55.000 0.00 0.00 0.00 2.74
132 133 0.251922 TAGGGCGGTGAGGTTAGTGT 60.252 55.000 0.00 0.00 0.00 3.55
133 134 1.125711 AGGGCGGTGAGGTTAGTGTT 61.126 55.000 0.00 0.00 0.00 3.32
134 135 0.250597 GGGCGGTGAGGTTAGTGTTT 60.251 55.000 0.00 0.00 0.00 2.83
135 136 1.154197 GGCGGTGAGGTTAGTGTTTC 58.846 55.000 0.00 0.00 0.00 2.78
136 137 1.270678 GGCGGTGAGGTTAGTGTTTCT 60.271 52.381 0.00 0.00 0.00 2.52
137 138 2.490991 GCGGTGAGGTTAGTGTTTCTT 58.509 47.619 0.00 0.00 0.00 2.52
138 139 2.223377 GCGGTGAGGTTAGTGTTTCTTG 59.777 50.000 0.00 0.00 0.00 3.02
139 140 3.463944 CGGTGAGGTTAGTGTTTCTTGT 58.536 45.455 0.00 0.00 0.00 3.16
140 141 3.493503 CGGTGAGGTTAGTGTTTCTTGTC 59.506 47.826 0.00 0.00 0.00 3.18
141 142 4.448210 GGTGAGGTTAGTGTTTCTTGTCA 58.552 43.478 0.00 0.00 0.00 3.58
142 143 5.063880 GGTGAGGTTAGTGTTTCTTGTCAT 58.936 41.667 0.00 0.00 0.00 3.06
143 144 5.049405 GGTGAGGTTAGTGTTTCTTGTCATG 60.049 44.000 0.00 0.00 0.00 3.07
144 145 5.527582 GTGAGGTTAGTGTTTCTTGTCATGT 59.472 40.000 0.00 0.00 0.00 3.21
145 146 6.704493 GTGAGGTTAGTGTTTCTTGTCATGTA 59.296 38.462 0.00 0.00 0.00 2.29
146 147 6.929049 TGAGGTTAGTGTTTCTTGTCATGTAG 59.071 38.462 0.00 0.00 0.00 2.74
147 148 5.701290 AGGTTAGTGTTTCTTGTCATGTAGC 59.299 40.000 0.00 0.00 0.00 3.58
148 149 5.389516 GGTTAGTGTTTCTTGTCATGTAGCG 60.390 44.000 0.00 0.00 0.00 4.26
149 150 3.990092 AGTGTTTCTTGTCATGTAGCGA 58.010 40.909 0.00 0.00 0.00 4.93
150 151 3.990469 AGTGTTTCTTGTCATGTAGCGAG 59.010 43.478 0.00 0.00 0.00 5.03
151 152 3.987868 GTGTTTCTTGTCATGTAGCGAGA 59.012 43.478 0.00 0.00 0.00 4.04
152 153 4.627467 GTGTTTCTTGTCATGTAGCGAGAT 59.373 41.667 0.00 0.00 0.00 2.75
153 154 5.120830 GTGTTTCTTGTCATGTAGCGAGATT 59.879 40.000 0.00 0.00 0.00 2.40
154 155 5.700832 TGTTTCTTGTCATGTAGCGAGATTT 59.299 36.000 0.00 0.00 0.00 2.17
155 156 5.784750 TTCTTGTCATGTAGCGAGATTTG 57.215 39.130 0.00 0.00 0.00 2.32
156 157 5.072040 TCTTGTCATGTAGCGAGATTTGA 57.928 39.130 0.00 0.00 0.00 2.69
157 158 5.664457 TCTTGTCATGTAGCGAGATTTGAT 58.336 37.500 0.00 0.00 0.00 2.57
158 159 6.805713 TCTTGTCATGTAGCGAGATTTGATA 58.194 36.000 0.00 0.00 0.00 2.15
159 160 7.436933 TCTTGTCATGTAGCGAGATTTGATAT 58.563 34.615 0.00 0.00 0.00 1.63
160 161 7.928167 TCTTGTCATGTAGCGAGATTTGATATT 59.072 33.333 0.00 0.00 0.00 1.28
161 162 9.196552 CTTGTCATGTAGCGAGATTTGATATTA 57.803 33.333 0.00 0.00 0.00 0.98
162 163 8.748380 TGTCATGTAGCGAGATTTGATATTAG 57.252 34.615 0.00 0.00 0.00 1.73
163 164 7.814587 TGTCATGTAGCGAGATTTGATATTAGG 59.185 37.037 0.00 0.00 0.00 2.69
164 165 7.815068 GTCATGTAGCGAGATTTGATATTAGGT 59.185 37.037 0.00 0.00 0.00 3.08
165 166 7.814587 TCATGTAGCGAGATTTGATATTAGGTG 59.185 37.037 0.00 0.00 0.00 4.00
166 167 5.926542 TGTAGCGAGATTTGATATTAGGTGC 59.073 40.000 0.00 0.00 0.00 5.01
167 168 5.220710 AGCGAGATTTGATATTAGGTGCT 57.779 39.130 0.00 0.00 0.00 4.40
168 169 5.615289 AGCGAGATTTGATATTAGGTGCTT 58.385 37.500 0.00 0.00 0.00 3.91
169 170 5.698545 AGCGAGATTTGATATTAGGTGCTTC 59.301 40.000 0.00 0.00 0.00 3.86
170 171 5.388890 GCGAGATTTGATATTAGGTGCTTCG 60.389 44.000 0.00 0.00 0.00 3.79
171 172 5.920840 CGAGATTTGATATTAGGTGCTTCGA 59.079 40.000 0.00 0.00 0.00 3.71
172 173 6.587990 CGAGATTTGATATTAGGTGCTTCGAT 59.412 38.462 0.00 0.00 0.00 3.59
173 174 7.116948 CGAGATTTGATATTAGGTGCTTCGATT 59.883 37.037 0.00 0.00 0.00 3.34
174 175 8.316640 AGATTTGATATTAGGTGCTTCGATTC 57.683 34.615 0.00 0.00 0.00 2.52
175 176 8.153550 AGATTTGATATTAGGTGCTTCGATTCT 58.846 33.333 0.00 0.00 0.00 2.40
176 177 9.424319 GATTTGATATTAGGTGCTTCGATTCTA 57.576 33.333 0.00 0.00 0.00 2.10
177 178 9.950496 ATTTGATATTAGGTGCTTCGATTCTAT 57.050 29.630 0.00 0.00 0.00 1.98
178 179 8.763049 TTGATATTAGGTGCTTCGATTCTATG 57.237 34.615 0.00 0.00 0.00 2.23
179 180 8.122472 TGATATTAGGTGCTTCGATTCTATGA 57.878 34.615 0.00 0.00 0.00 2.15
180 181 8.585018 TGATATTAGGTGCTTCGATTCTATGAA 58.415 33.333 0.00 0.00 0.00 2.57
181 182 9.424319 GATATTAGGTGCTTCGATTCTATGAAA 57.576 33.333 0.00 0.00 0.00 2.69
182 183 7.721286 ATTAGGTGCTTCGATTCTATGAAAG 57.279 36.000 0.00 0.00 0.00 2.62
183 184 5.344743 AGGTGCTTCGATTCTATGAAAGA 57.655 39.130 0.00 0.00 0.00 2.52
184 185 5.355596 AGGTGCTTCGATTCTATGAAAGAG 58.644 41.667 0.00 0.00 35.05 2.85
185 186 5.105146 AGGTGCTTCGATTCTATGAAAGAGT 60.105 40.000 0.00 0.00 35.05 3.24
186 187 5.582665 GGTGCTTCGATTCTATGAAAGAGTT 59.417 40.000 0.00 0.00 35.05 3.01
187 188 6.237969 GGTGCTTCGATTCTATGAAAGAGTTC 60.238 42.308 0.00 0.00 35.05 3.01
189 190 6.873605 TGCTTCGATTCTATGAAAGAGTTCAA 59.126 34.615 0.00 0.00 46.66 2.69
190 191 7.387673 TGCTTCGATTCTATGAAAGAGTTCAAA 59.612 33.333 0.00 0.00 46.66 2.69
191 192 8.394121 GCTTCGATTCTATGAAAGAGTTCAAAT 58.606 33.333 0.00 0.00 46.66 2.32
192 193 9.699985 CTTCGATTCTATGAAAGAGTTCAAATG 57.300 33.333 0.00 0.00 46.66 2.32
193 194 7.688372 TCGATTCTATGAAAGAGTTCAAATGC 58.312 34.615 0.00 0.00 46.66 3.56
194 195 6.626488 CGATTCTATGAAAGAGTTCAAATGCG 59.374 38.462 0.00 0.00 46.66 4.73
195 196 7.464577 CGATTCTATGAAAGAGTTCAAATGCGA 60.465 37.037 0.00 0.00 46.66 5.10
196 197 6.408858 TCTATGAAAGAGTTCAAATGCGAC 57.591 37.500 0.00 0.00 46.66 5.19
197 198 3.519908 TGAAAGAGTTCAAATGCGACG 57.480 42.857 0.00 0.00 40.87 5.12
198 199 3.127589 TGAAAGAGTTCAAATGCGACGA 58.872 40.909 0.00 0.00 40.87 4.20
199 200 3.745975 TGAAAGAGTTCAAATGCGACGAT 59.254 39.130 0.00 0.00 40.87 3.73
200 201 4.213270 TGAAAGAGTTCAAATGCGACGATT 59.787 37.500 0.00 0.00 40.87 3.34
201 202 3.729526 AGAGTTCAAATGCGACGATTG 57.270 42.857 0.00 0.31 0.00 2.67
202 203 2.159653 AGAGTTCAAATGCGACGATTGC 60.160 45.455 0.00 0.00 0.00 3.56
203 204 0.900547 GTTCAAATGCGACGATTGCG 59.099 50.000 0.00 0.00 44.79 4.85
204 205 0.793250 TTCAAATGCGACGATTGCGA 59.207 45.000 0.00 0.00 41.64 5.10
205 206 0.094558 TCAAATGCGACGATTGCGAC 59.905 50.000 0.00 0.00 41.64 5.19
206 207 0.095245 CAAATGCGACGATTGCGACT 59.905 50.000 0.00 0.00 41.64 4.18
207 208 0.370273 AAATGCGACGATTGCGACTC 59.630 50.000 0.00 0.00 41.64 3.36
208 209 1.421410 AATGCGACGATTGCGACTCC 61.421 55.000 0.00 0.00 41.64 3.85
209 210 2.506217 GCGACGATTGCGACTCCA 60.506 61.111 0.00 0.00 41.64 3.86
210 211 2.508891 GCGACGATTGCGACTCCAG 61.509 63.158 0.00 0.00 41.64 3.86
211 212 1.874019 CGACGATTGCGACTCCAGG 60.874 63.158 0.00 0.00 41.64 4.45
212 213 1.511305 GACGATTGCGACTCCAGGA 59.489 57.895 0.00 0.00 41.64 3.86
213 214 0.802607 GACGATTGCGACTCCAGGAC 60.803 60.000 0.00 0.00 41.64 3.85
214 215 1.874019 CGATTGCGACTCCAGGACG 60.874 63.158 0.00 0.00 40.82 4.79
219 220 3.906718 CGACTCCAGGACGCTAGT 58.093 61.111 0.00 0.00 0.00 2.57
220 221 1.722677 CGACTCCAGGACGCTAGTC 59.277 63.158 0.00 0.00 46.34 2.59
230 231 2.580966 GACGCTAGTCCTTAAGGGTG 57.419 55.000 21.53 13.61 41.41 4.61
231 232 1.823610 GACGCTAGTCCTTAAGGGTGT 59.176 52.381 21.53 16.62 41.41 4.16
232 233 1.549170 ACGCTAGTCCTTAAGGGTGTG 59.451 52.381 21.53 15.99 37.49 3.82
233 234 1.549170 CGCTAGTCCTTAAGGGTGTGT 59.451 52.381 21.53 4.69 36.25 3.72
234 235 2.028385 CGCTAGTCCTTAAGGGTGTGTT 60.028 50.000 21.53 4.03 36.25 3.32
235 236 3.556423 CGCTAGTCCTTAAGGGTGTGTTT 60.556 47.826 21.53 2.74 36.25 2.83
236 237 3.751698 GCTAGTCCTTAAGGGTGTGTTTG 59.248 47.826 21.53 5.51 36.25 2.93
237 238 3.223674 AGTCCTTAAGGGTGTGTTTGG 57.776 47.619 21.53 0.00 36.25 3.28
238 239 2.512476 AGTCCTTAAGGGTGTGTTTGGT 59.488 45.455 21.53 0.00 36.25 3.67
239 240 3.053170 AGTCCTTAAGGGTGTGTTTGGTT 60.053 43.478 21.53 0.00 36.25 3.67
240 241 3.067601 GTCCTTAAGGGTGTGTTTGGTTG 59.932 47.826 21.53 0.00 36.25 3.77
241 242 2.364002 CCTTAAGGGTGTGTTTGGTTGG 59.636 50.000 14.25 0.00 0.00 3.77
242 243 2.074729 TAAGGGTGTGTTTGGTTGGG 57.925 50.000 0.00 0.00 0.00 4.12
243 244 0.689412 AAGGGTGTGTTTGGTTGGGG 60.689 55.000 0.00 0.00 0.00 4.96
244 245 1.075896 GGGTGTGTTTGGTTGGGGA 60.076 57.895 0.00 0.00 0.00 4.81
245 246 0.688087 GGGTGTGTTTGGTTGGGGAA 60.688 55.000 0.00 0.00 0.00 3.97
246 247 1.419381 GGTGTGTTTGGTTGGGGAAT 58.581 50.000 0.00 0.00 0.00 3.01
247 248 1.069978 GGTGTGTTTGGTTGGGGAATG 59.930 52.381 0.00 0.00 0.00 2.67
248 249 2.035632 GTGTGTTTGGTTGGGGAATGA 58.964 47.619 0.00 0.00 0.00 2.57
249 250 2.432510 GTGTGTTTGGTTGGGGAATGAA 59.567 45.455 0.00 0.00 0.00 2.57
250 251 2.697751 TGTGTTTGGTTGGGGAATGAAG 59.302 45.455 0.00 0.00 0.00 3.02
251 252 2.698274 GTGTTTGGTTGGGGAATGAAGT 59.302 45.455 0.00 0.00 0.00 3.01
252 253 3.892588 GTGTTTGGTTGGGGAATGAAGTA 59.107 43.478 0.00 0.00 0.00 2.24
253 254 4.022329 GTGTTTGGTTGGGGAATGAAGTAG 60.022 45.833 0.00 0.00 0.00 2.57
254 255 4.141135 TGTTTGGTTGGGGAATGAAGTAGA 60.141 41.667 0.00 0.00 0.00 2.59
255 256 4.733077 TTGGTTGGGGAATGAAGTAGAA 57.267 40.909 0.00 0.00 0.00 2.10
256 257 4.946160 TGGTTGGGGAATGAAGTAGAAT 57.054 40.909 0.00 0.00 0.00 2.40
257 258 4.599041 TGGTTGGGGAATGAAGTAGAATG 58.401 43.478 0.00 0.00 0.00 2.67
258 259 4.044065 TGGTTGGGGAATGAAGTAGAATGT 59.956 41.667 0.00 0.00 0.00 2.71
259 260 5.251932 TGGTTGGGGAATGAAGTAGAATGTA 59.748 40.000 0.00 0.00 0.00 2.29
260 261 6.184789 GGTTGGGGAATGAAGTAGAATGTAA 58.815 40.000 0.00 0.00 0.00 2.41
261 262 6.095021 GGTTGGGGAATGAAGTAGAATGTAAC 59.905 42.308 0.00 0.00 0.00 2.50
262 263 5.424757 TGGGGAATGAAGTAGAATGTAACG 58.575 41.667 0.00 0.00 0.00 3.18
263 264 5.046159 TGGGGAATGAAGTAGAATGTAACGT 60.046 40.000 0.00 0.00 0.00 3.99
264 265 5.522824 GGGGAATGAAGTAGAATGTAACGTC 59.477 44.000 0.00 0.00 0.00 4.34
265 266 6.103997 GGGAATGAAGTAGAATGTAACGTCA 58.896 40.000 0.00 0.00 38.24 4.35
266 267 6.761714 GGGAATGAAGTAGAATGTAACGTCAT 59.238 38.462 0.00 0.00 43.57 3.06
267 268 7.254455 GGGAATGAAGTAGAATGTAACGTCATG 60.254 40.741 4.99 0.00 41.78 3.07
268 269 7.254455 GGAATGAAGTAGAATGTAACGTCATGG 60.254 40.741 4.99 0.00 41.78 3.66
269 270 6.032956 TGAAGTAGAATGTAACGTCATGGT 57.967 37.500 0.00 0.00 30.73 3.55
270 271 6.460781 TGAAGTAGAATGTAACGTCATGGTT 58.539 36.000 0.00 0.00 30.73 3.67
271 272 6.588756 TGAAGTAGAATGTAACGTCATGGTTC 59.411 38.462 0.00 0.00 30.73 3.62
272 273 5.416947 AGTAGAATGTAACGTCATGGTTCC 58.583 41.667 0.00 0.00 0.00 3.62
273 274 4.280436 AGAATGTAACGTCATGGTTCCA 57.720 40.909 0.00 0.00 0.00 3.53
274 275 4.843728 AGAATGTAACGTCATGGTTCCAT 58.156 39.130 0.00 0.00 29.02 3.41
275 276 5.253330 AGAATGTAACGTCATGGTTCCATT 58.747 37.500 1.11 5.68 38.60 3.16
276 277 5.354234 AGAATGTAACGTCATGGTTCCATTC 59.646 40.000 17.62 17.62 45.74 2.67
277 278 3.340034 TGTAACGTCATGGTTCCATTCC 58.660 45.455 1.11 0.00 0.00 3.01
278 279 2.577606 AACGTCATGGTTCCATTCCA 57.422 45.000 1.11 0.00 39.41 3.53
279 280 1.821216 ACGTCATGGTTCCATTCCAC 58.179 50.000 1.11 0.00 37.81 4.02
280 281 1.351017 ACGTCATGGTTCCATTCCACT 59.649 47.619 1.11 0.00 37.81 4.00
281 282 2.569853 ACGTCATGGTTCCATTCCACTA 59.430 45.455 1.11 0.00 37.81 2.74
282 283 3.198068 CGTCATGGTTCCATTCCACTAG 58.802 50.000 1.11 0.00 37.81 2.57
283 284 3.118775 CGTCATGGTTCCATTCCACTAGA 60.119 47.826 0.00 0.00 37.81 2.43
284 285 4.622933 CGTCATGGTTCCATTCCACTAGAA 60.623 45.833 0.00 0.00 37.81 2.10
285 286 5.440610 GTCATGGTTCCATTCCACTAGAAT 58.559 41.667 0.00 0.00 46.54 2.40
294 295 4.675063 ATTCCACTAGAATGGGTTGGTT 57.325 40.909 0.00 0.00 43.81 3.67
295 296 3.713826 TCCACTAGAATGGGTTGGTTC 57.286 47.619 0.00 0.00 40.49 3.62
296 297 3.256704 TCCACTAGAATGGGTTGGTTCT 58.743 45.455 0.00 0.00 40.49 3.01
297 298 3.009033 TCCACTAGAATGGGTTGGTTCTG 59.991 47.826 0.00 0.00 40.49 3.02
298 299 3.347216 CACTAGAATGGGTTGGTTCTGG 58.653 50.000 0.00 0.00 38.45 3.86
299 300 2.290960 ACTAGAATGGGTTGGTTCTGGC 60.291 50.000 0.00 0.00 36.68 4.85
300 301 0.609131 AGAATGGGTTGGTTCTGGCG 60.609 55.000 0.00 0.00 33.64 5.69
301 302 1.595093 GAATGGGTTGGTTCTGGCGG 61.595 60.000 0.00 0.00 0.00 6.13
302 303 3.583882 ATGGGTTGGTTCTGGCGGG 62.584 63.158 0.00 0.00 0.00 6.13
303 304 4.280019 GGGTTGGTTCTGGCGGGT 62.280 66.667 0.00 0.00 0.00 5.28
304 305 2.203437 GGTTGGTTCTGGCGGGTT 60.203 61.111 0.00 0.00 0.00 4.11
305 306 2.265904 GGTTGGTTCTGGCGGGTTC 61.266 63.158 0.00 0.00 0.00 3.62
306 307 2.114411 TTGGTTCTGGCGGGTTCC 59.886 61.111 0.00 0.00 0.00 3.62
317 318 2.597510 GGGTTCCGCATATGGGGC 60.598 66.667 29.29 18.18 46.55 5.80
334 335 1.429463 GGCGAATATGCCGTTCTAGG 58.571 55.000 0.00 0.00 46.75 3.02
335 336 1.429463 GCGAATATGCCGTTCTAGGG 58.571 55.000 0.00 0.00 0.00 3.53
336 337 1.000506 GCGAATATGCCGTTCTAGGGA 59.999 52.381 0.00 0.00 35.63 4.20
337 338 2.547218 GCGAATATGCCGTTCTAGGGAA 60.547 50.000 0.00 0.00 34.56 3.97
338 339 3.864921 GCGAATATGCCGTTCTAGGGAAT 60.865 47.826 0.00 0.00 34.56 3.01
339 340 3.679980 CGAATATGCCGTTCTAGGGAATG 59.320 47.826 0.00 0.00 37.99 2.67
340 341 4.560716 CGAATATGCCGTTCTAGGGAATGA 60.561 45.833 0.00 0.00 39.98 2.57
341 342 2.622064 ATGCCGTTCTAGGGAATGAC 57.378 50.000 0.00 0.00 39.98 3.06
342 343 1.568504 TGCCGTTCTAGGGAATGACT 58.431 50.000 0.00 0.00 39.98 3.41
343 344 1.906574 TGCCGTTCTAGGGAATGACTT 59.093 47.619 0.00 0.00 39.98 3.01
344 345 2.280628 GCCGTTCTAGGGAATGACTTG 58.719 52.381 0.00 0.00 39.98 3.16
345 346 2.906354 CCGTTCTAGGGAATGACTTGG 58.094 52.381 0.00 0.00 39.98 3.61
346 347 2.236395 CCGTTCTAGGGAATGACTTGGT 59.764 50.000 0.00 0.00 39.98 3.67
347 348 3.307480 CCGTTCTAGGGAATGACTTGGTT 60.307 47.826 0.00 0.00 39.98 3.67
348 349 3.933332 CGTTCTAGGGAATGACTTGGTTC 59.067 47.826 0.00 0.00 39.98 3.62
349 350 4.262617 GTTCTAGGGAATGACTTGGTTCC 58.737 47.826 0.00 0.00 42.51 3.62
350 351 3.803340 TCTAGGGAATGACTTGGTTCCT 58.197 45.455 4.36 0.00 42.76 3.36
351 352 2.887151 AGGGAATGACTTGGTTCCTG 57.113 50.000 4.36 0.00 42.76 3.86
352 353 2.065799 AGGGAATGACTTGGTTCCTGT 58.934 47.619 4.36 0.00 42.76 4.00
353 354 2.447047 AGGGAATGACTTGGTTCCTGTT 59.553 45.455 4.36 0.00 42.76 3.16
354 355 2.820197 GGGAATGACTTGGTTCCTGTTC 59.180 50.000 4.36 0.00 42.76 3.18
355 356 3.498661 GGGAATGACTTGGTTCCTGTTCT 60.499 47.826 4.36 0.00 42.76 3.01
356 357 4.145052 GGAATGACTTGGTTCCTGTTCTT 58.855 43.478 0.00 0.00 40.55 2.52
357 358 4.216472 GGAATGACTTGGTTCCTGTTCTTC 59.784 45.833 0.00 0.00 40.55 2.87
358 359 2.833794 TGACTTGGTTCCTGTTCTTCG 58.166 47.619 0.00 0.00 0.00 3.79
359 360 2.432874 TGACTTGGTTCCTGTTCTTCGA 59.567 45.455 0.00 0.00 0.00 3.71
360 361 2.801111 GACTTGGTTCCTGTTCTTCGAC 59.199 50.000 0.00 0.00 0.00 4.20
361 362 2.143925 CTTGGTTCCTGTTCTTCGACC 58.856 52.381 0.00 0.00 0.00 4.79
362 363 0.395312 TGGTTCCTGTTCTTCGACCC 59.605 55.000 0.00 0.00 0.00 4.46
363 364 0.395312 GGTTCCTGTTCTTCGACCCA 59.605 55.000 0.00 0.00 0.00 4.51
364 365 1.202722 GGTTCCTGTTCTTCGACCCAA 60.203 52.381 0.00 0.00 0.00 4.12
365 366 1.871676 GTTCCTGTTCTTCGACCCAAC 59.128 52.381 0.00 0.00 0.00 3.77
366 367 0.395312 TCCTGTTCTTCGACCCAACC 59.605 55.000 0.00 0.00 0.00 3.77
367 368 0.107831 CCTGTTCTTCGACCCAACCA 59.892 55.000 0.00 0.00 0.00 3.67
368 369 1.476110 CCTGTTCTTCGACCCAACCAA 60.476 52.381 0.00 0.00 0.00 3.67
369 370 2.294074 CTGTTCTTCGACCCAACCAAA 58.706 47.619 0.00 0.00 0.00 3.28
370 371 2.018515 TGTTCTTCGACCCAACCAAAC 58.981 47.619 0.00 0.00 0.00 2.93
371 372 1.003223 GTTCTTCGACCCAACCAAACG 60.003 52.381 0.00 0.00 0.00 3.60
372 373 1.161563 TCTTCGACCCAACCAAACGC 61.162 55.000 0.00 0.00 0.00 4.84
373 374 2.125202 CTTCGACCCAACCAAACGCC 62.125 60.000 0.00 0.00 0.00 5.68
374 375 2.888464 TTCGACCCAACCAAACGCCA 62.888 55.000 0.00 0.00 0.00 5.69
375 376 2.903547 CGACCCAACCAAACGCCAG 61.904 63.158 0.00 0.00 0.00 4.85
376 377 1.527380 GACCCAACCAAACGCCAGA 60.527 57.895 0.00 0.00 0.00 3.86
377 378 1.076632 ACCCAACCAAACGCCAGAA 60.077 52.632 0.00 0.00 0.00 3.02
378 379 1.362355 CCCAACCAAACGCCAGAAC 59.638 57.895 0.00 0.00 0.00 3.01
379 380 1.362355 CCAACCAAACGCCAGAACC 59.638 57.895 0.00 0.00 0.00 3.62
380 381 1.388065 CCAACCAAACGCCAGAACCA 61.388 55.000 0.00 0.00 0.00 3.67
381 382 0.248866 CAACCAAACGCCAGAACCAC 60.249 55.000 0.00 0.00 0.00 4.16
382 383 1.388837 AACCAAACGCCAGAACCACC 61.389 55.000 0.00 0.00 0.00 4.61
383 384 2.561037 CCAAACGCCAGAACCACCC 61.561 63.158 0.00 0.00 0.00 4.61
384 385 2.203437 AAACGCCAGAACCACCCC 60.203 61.111 0.00 0.00 0.00 4.95
385 386 2.763645 AAACGCCAGAACCACCCCT 61.764 57.895 0.00 0.00 0.00 4.79
386 387 2.976494 AAACGCCAGAACCACCCCTG 62.976 60.000 0.00 0.00 0.00 4.45
389 390 4.366684 CCAGAACCACCCCTGGGC 62.367 72.222 7.39 0.00 44.68 5.36
390 391 3.579302 CAGAACCACCCCTGGGCA 61.579 66.667 7.39 0.00 42.74 5.36
391 392 3.580319 AGAACCACCCCTGGGCAC 61.580 66.667 7.39 0.00 42.74 5.01
403 404 3.324108 GGGCACGGGACCAACCTA 61.324 66.667 3.36 0.00 44.16 3.08
404 405 2.676265 GGGCACGGGACCAACCTAT 61.676 63.158 3.36 0.00 44.16 2.57
405 406 1.301954 GGCACGGGACCAACCTATT 59.698 57.895 0.00 0.00 38.98 1.73
406 407 0.542805 GGCACGGGACCAACCTATTA 59.457 55.000 0.00 0.00 38.98 0.98
407 408 1.660167 GCACGGGACCAACCTATTAC 58.340 55.000 0.00 0.00 38.98 1.89
408 409 1.930567 CACGGGACCAACCTATTACG 58.069 55.000 0.00 0.00 38.98 3.18
409 410 1.205417 CACGGGACCAACCTATTACGT 59.795 52.381 0.00 0.00 38.98 3.57
410 411 1.901833 ACGGGACCAACCTATTACGTT 59.098 47.619 0.00 0.00 38.98 3.99
411 412 2.094026 ACGGGACCAACCTATTACGTTC 60.094 50.000 0.00 0.00 38.98 3.95
412 413 2.739609 CGGGACCAACCTATTACGTTCC 60.740 54.545 0.00 0.00 38.98 3.62
413 414 2.236893 GGGACCAACCTATTACGTTCCA 59.763 50.000 0.00 0.00 38.98 3.53
414 415 3.264947 GGACCAACCTATTACGTTCCAC 58.735 50.000 0.00 0.00 35.41 4.02
415 416 3.055602 GGACCAACCTATTACGTTCCACT 60.056 47.826 0.00 0.00 35.41 4.00
416 417 4.564199 GGACCAACCTATTACGTTCCACTT 60.564 45.833 0.00 0.00 35.41 3.16
417 418 4.320870 ACCAACCTATTACGTTCCACTTG 58.679 43.478 0.00 0.00 0.00 3.16
418 419 4.040706 ACCAACCTATTACGTTCCACTTGA 59.959 41.667 0.00 0.00 0.00 3.02
419 420 5.183228 CCAACCTATTACGTTCCACTTGAT 58.817 41.667 0.00 0.00 0.00 2.57
420 421 5.064707 CCAACCTATTACGTTCCACTTGATG 59.935 44.000 0.00 0.00 0.00 3.07
421 422 5.670792 ACCTATTACGTTCCACTTGATGA 57.329 39.130 0.00 0.00 0.00 2.92
422 423 5.416947 ACCTATTACGTTCCACTTGATGAC 58.583 41.667 0.00 0.00 0.00 3.06
423 424 4.809426 CCTATTACGTTCCACTTGATGACC 59.191 45.833 0.00 0.00 0.00 4.02
424 425 4.553330 ATTACGTTCCACTTGATGACCT 57.447 40.909 0.00 0.00 0.00 3.85
425 426 2.169832 ACGTTCCACTTGATGACCTG 57.830 50.000 0.00 0.00 0.00 4.00
426 427 1.691976 ACGTTCCACTTGATGACCTGA 59.308 47.619 0.00 0.00 0.00 3.86
427 428 2.104111 ACGTTCCACTTGATGACCTGAA 59.896 45.455 0.00 0.00 0.00 3.02
428 429 2.480419 CGTTCCACTTGATGACCTGAAC 59.520 50.000 0.00 0.00 0.00 3.18
429 430 3.744660 GTTCCACTTGATGACCTGAACT 58.255 45.455 0.00 0.00 0.00 3.01
430 431 4.560716 CGTTCCACTTGATGACCTGAACTA 60.561 45.833 0.00 0.00 0.00 2.24
431 432 5.305585 GTTCCACTTGATGACCTGAACTAA 58.694 41.667 0.00 0.00 0.00 2.24
432 433 5.560722 TCCACTTGATGACCTGAACTAAA 57.439 39.130 0.00 0.00 0.00 1.85
433 434 5.305585 TCCACTTGATGACCTGAACTAAAC 58.694 41.667 0.00 0.00 0.00 2.01
434 435 5.063204 CCACTTGATGACCTGAACTAAACA 58.937 41.667 0.00 0.00 0.00 2.83
435 436 5.049405 CCACTTGATGACCTGAACTAAACAC 60.049 44.000 0.00 0.00 0.00 3.32
436 437 5.527214 CACTTGATGACCTGAACTAAACACA 59.473 40.000 0.00 0.00 0.00 3.72
437 438 6.205464 CACTTGATGACCTGAACTAAACACAT 59.795 38.462 0.00 0.00 0.00 3.21
438 439 6.205464 ACTTGATGACCTGAACTAAACACATG 59.795 38.462 0.00 0.00 0.00 3.21
439 440 5.863965 TGATGACCTGAACTAAACACATGA 58.136 37.500 0.00 0.00 0.00 3.07
440 441 6.475504 TGATGACCTGAACTAAACACATGAT 58.524 36.000 0.00 0.00 0.00 2.45
441 442 7.619965 TGATGACCTGAACTAAACACATGATA 58.380 34.615 0.00 0.00 0.00 2.15
460 461 2.331451 GGGCACGTGCACAAAGAC 59.669 61.111 38.60 20.85 45.57 3.01
461 462 2.477176 GGGCACGTGCACAAAGACA 61.477 57.895 38.60 0.00 45.57 3.41
464 465 0.385974 GCACGTGCACAAAGACATCC 60.386 55.000 34.52 0.00 41.59 3.51
468 469 1.453155 GTGCACAAAGACATCCCGAT 58.547 50.000 13.17 0.00 0.00 4.18
490 491 1.741401 CATCGGCAAGGTCAAGCGA 60.741 57.895 0.00 0.00 0.00 4.93
512 514 2.838225 CGGTAGGGGAGCGGTGAT 60.838 66.667 0.00 0.00 45.37 3.06
516 518 1.901948 TAGGGGAGCGGTGATAGCG 60.902 63.158 0.00 0.00 42.73 4.26
528 530 3.841379 GATAGCGGTGCATCGGCGA 62.841 63.158 22.81 13.87 45.16 5.54
538 540 1.874019 CATCGGCGACTCGTTCTGG 60.874 63.158 13.76 0.00 0.00 3.86
554 556 4.304939 GTTCTGGTGTAGTAGTGGTTGTC 58.695 47.826 0.00 0.00 0.00 3.18
557 559 1.615392 GGTGTAGTAGTGGTTGTCCGT 59.385 52.381 0.00 0.00 36.30 4.69
558 560 2.608752 GGTGTAGTAGTGGTTGTCCGTG 60.609 54.545 0.00 0.00 36.30 4.94
560 562 1.615392 GTAGTAGTGGTTGTCCGTGGT 59.385 52.381 0.00 0.00 36.30 4.16
561 563 0.677842 AGTAGTGGTTGTCCGTGGTC 59.322 55.000 0.00 0.00 36.30 4.02
562 564 0.390124 GTAGTGGTTGTCCGTGGTCA 59.610 55.000 0.00 0.00 36.30 4.02
563 565 1.121378 TAGTGGTTGTCCGTGGTCAA 58.879 50.000 0.00 0.00 36.30 3.18
679 689 8.443898 AAAATAAAGATAAAAAGAACGGCGAC 57.556 30.769 16.62 7.38 0.00 5.19
697 714 3.365220 GCGACGATATCCAATAACTCTGC 59.635 47.826 0.00 0.00 0.00 4.26
699 716 5.164233 CGACGATATCCAATAACTCTGCAT 58.836 41.667 0.00 0.00 0.00 3.96
784 802 3.334691 CAACGTTTGCTCCTGAATCCTA 58.665 45.455 0.00 0.00 0.00 2.94
895 914 1.598856 CCCTTCCTCCTCCTCCTCCT 61.599 65.000 0.00 0.00 0.00 3.69
896 915 0.105709 CCTTCCTCCTCCTCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
897 916 0.105709 CTTCCTCCTCCTCCTCCTCC 60.106 65.000 0.00 0.00 0.00 4.30
950 969 4.678743 GGGTTTGCTCCCGCCCTT 62.679 66.667 0.00 0.00 37.93 3.95
1115 1136 2.416296 CGTACTTCCGTAACCTGATGCA 60.416 50.000 0.00 0.00 0.00 3.96
1470 1499 5.067954 GCCTGACCTTGAAACTAACCTTTA 58.932 41.667 0.00 0.00 0.00 1.85
1494 1523 9.679661 TTATAATCTTGTACCAAAATGCTCTGA 57.320 29.630 0.00 0.00 0.00 3.27
1566 1596 7.140705 TGTCAAAAGCTGTCAAGAAACATATG 58.859 34.615 0.00 0.00 0.00 1.78
1619 1649 3.548745 TGCCACATGACTTATCTCAGG 57.451 47.619 0.00 0.00 0.00 3.86
2049 2079 9.410556 GATTTACTGTCAAATAAATGCAAGTGT 57.589 29.630 0.00 0.00 32.42 3.55
2204 2234 0.250727 GCACACTGGGGCTTCTAACA 60.251 55.000 0.00 0.00 0.00 2.41
2433 2463 5.468540 AGTACTTCTGTAGCATGTTCACA 57.531 39.130 0.00 0.00 0.00 3.58
2742 2775 4.966168 TCTTGCATATGGAACTAGGGTACA 59.034 41.667 5.43 0.00 0.00 2.90
2743 2776 4.682778 TGCATATGGAACTAGGGTACAC 57.317 45.455 4.56 0.00 0.00 2.90
2744 2777 3.069016 TGCATATGGAACTAGGGTACACG 59.931 47.826 4.56 0.00 0.00 4.49
2802 2835 4.819769 TCCACCTTTGATATTTTTGCTGC 58.180 39.130 0.00 0.00 0.00 5.25
2898 2931 7.667043 TGCGGTAAAATCCTATGCTAAATAG 57.333 36.000 0.00 0.00 0.00 1.73
3269 3305 3.904136 AAAGGAAGTTTGCATGTCTCG 57.096 42.857 0.00 0.00 0.00 4.04
3357 3393 6.703165 AGCAAAGAGAAATTTCATGGTTGAAC 59.297 34.615 19.99 7.03 41.50 3.18
3455 3491 9.638239 GATAGGACAAAAGCAATCAATTAACAA 57.362 29.630 0.00 0.00 0.00 2.83
3589 3634 8.571461 TTCTGCTTCATGAATAATGTTTCTCT 57.429 30.769 8.96 0.00 37.56 3.10
3621 3666 3.243569 CGGGAGACTAGGACTGCATAAAG 60.244 52.174 11.32 0.00 0.00 1.85
3624 3669 4.442192 GGAGACTAGGACTGCATAAAGTGG 60.442 50.000 0.00 0.00 0.00 4.00
3635 3680 5.101648 TGCATAAAGTGGAGTCATCATCA 57.898 39.130 0.00 0.00 0.00 3.07
3654 3699 1.600957 CATCGTCATTGTCCCAGATGC 59.399 52.381 0.00 0.00 30.84 3.91
3655 3700 0.107703 TCGTCATTGTCCCAGATGCC 60.108 55.000 0.00 0.00 0.00 4.40
3661 3706 0.616395 TTGTCCCAGATGCCGTCCTA 60.616 55.000 0.00 0.00 0.00 2.94
3670 3715 5.063204 CCAGATGCCGTCCTAAAAATGATA 58.937 41.667 0.00 0.00 0.00 2.15
3956 4001 7.445121 ACTCTGAGTGTGTTGAATCTTCATTA 58.555 34.615 10.00 0.00 37.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.202797 CCGCCATCCGTCTGAGTG 60.203 66.667 0.00 0.00 34.38 3.51
5 6 4.388499 AAACGCCGCCATCCGTCT 62.388 61.111 0.00 0.00 36.56 4.18
6 7 3.861263 GAAACGCCGCCATCCGTC 61.861 66.667 0.00 0.00 36.56 4.79
7 8 3.894547 AAGAAACGCCGCCATCCGT 62.895 57.895 0.00 0.00 39.70 4.69
8 9 3.095898 GAAGAAACGCCGCCATCCG 62.096 63.158 0.00 0.00 0.00 4.18
9 10 1.305930 AAGAAGAAACGCCGCCATCC 61.306 55.000 0.00 0.00 0.00 3.51
10 11 0.097150 GAAGAAGAAACGCCGCCATC 59.903 55.000 0.00 0.00 0.00 3.51
11 12 1.635663 CGAAGAAGAAACGCCGCCAT 61.636 55.000 0.00 0.00 0.00 4.40
12 13 2.314647 CGAAGAAGAAACGCCGCCA 61.315 57.895 0.00 0.00 0.00 5.69
13 14 1.359459 ATCGAAGAAGAAACGCCGCC 61.359 55.000 0.00 0.00 43.58 6.13
14 15 0.025128 GATCGAAGAAGAAACGCCGC 59.975 55.000 0.00 0.00 43.58 6.53
15 16 1.630148 AGATCGAAGAAGAAACGCCG 58.370 50.000 0.00 0.00 43.58 6.46
16 17 2.348971 GGAAGATCGAAGAAGAAACGCC 59.651 50.000 0.00 0.00 43.58 5.68
17 18 2.028165 CGGAAGATCGAAGAAGAAACGC 59.972 50.000 0.00 0.00 43.58 4.84
18 19 2.599082 CCGGAAGATCGAAGAAGAAACG 59.401 50.000 0.00 0.00 43.58 3.60
19 20 2.930682 CCCGGAAGATCGAAGAAGAAAC 59.069 50.000 0.73 0.00 43.58 2.78
20 21 2.677037 GCCCGGAAGATCGAAGAAGAAA 60.677 50.000 0.73 0.00 43.58 2.52
21 22 1.134788 GCCCGGAAGATCGAAGAAGAA 60.135 52.381 0.73 0.00 43.58 2.52
22 23 0.460311 GCCCGGAAGATCGAAGAAGA 59.540 55.000 0.73 0.00 43.58 2.87
23 24 0.461961 AGCCCGGAAGATCGAAGAAG 59.538 55.000 0.73 0.00 43.58 2.85
24 25 0.902531 AAGCCCGGAAGATCGAAGAA 59.097 50.000 0.73 0.00 43.58 2.52
25 26 1.771565 TAAGCCCGGAAGATCGAAGA 58.228 50.000 0.73 0.00 45.75 2.87
26 27 2.821991 ATAAGCCCGGAAGATCGAAG 57.178 50.000 0.73 0.00 0.00 3.79
27 28 3.194968 GGATATAAGCCCGGAAGATCGAA 59.805 47.826 0.73 0.00 0.00 3.71
28 29 2.758979 GGATATAAGCCCGGAAGATCGA 59.241 50.000 0.73 0.00 0.00 3.59
29 30 2.761208 AGGATATAAGCCCGGAAGATCG 59.239 50.000 0.73 0.00 0.00 3.69
30 31 4.027437 AGAGGATATAAGCCCGGAAGATC 58.973 47.826 0.73 0.00 0.00 2.75
31 32 3.772025 CAGAGGATATAAGCCCGGAAGAT 59.228 47.826 0.73 0.00 0.00 2.40
32 33 3.165875 CAGAGGATATAAGCCCGGAAGA 58.834 50.000 0.73 0.00 0.00 2.87
33 34 2.354203 GCAGAGGATATAAGCCCGGAAG 60.354 54.545 0.73 0.00 0.00 3.46
34 35 1.623811 GCAGAGGATATAAGCCCGGAA 59.376 52.381 0.73 0.00 0.00 4.30
35 36 1.267121 GCAGAGGATATAAGCCCGGA 58.733 55.000 0.73 0.00 0.00 5.14
36 37 0.976641 TGCAGAGGATATAAGCCCGG 59.023 55.000 0.00 0.00 0.00 5.73
37 38 2.027745 ACATGCAGAGGATATAAGCCCG 60.028 50.000 0.00 0.00 0.00 6.13
38 39 3.710209 ACATGCAGAGGATATAAGCCC 57.290 47.619 0.00 0.00 0.00 5.19
39 40 3.681897 CGAACATGCAGAGGATATAAGCC 59.318 47.826 0.00 0.00 0.00 4.35
40 41 4.310769 ACGAACATGCAGAGGATATAAGC 58.689 43.478 0.00 0.00 0.00 3.09
41 42 5.117745 CGAACGAACATGCAGAGGATATAAG 59.882 44.000 0.00 0.00 0.00 1.73
42 43 4.982295 CGAACGAACATGCAGAGGATATAA 59.018 41.667 0.00 0.00 0.00 0.98
43 44 4.037565 ACGAACGAACATGCAGAGGATATA 59.962 41.667 0.14 0.00 0.00 0.86
44 45 3.181475 ACGAACGAACATGCAGAGGATAT 60.181 43.478 0.14 0.00 0.00 1.63
45 46 2.165641 ACGAACGAACATGCAGAGGATA 59.834 45.455 0.14 0.00 0.00 2.59
46 47 1.066858 ACGAACGAACATGCAGAGGAT 60.067 47.619 0.14 0.00 0.00 3.24
47 48 0.317160 ACGAACGAACATGCAGAGGA 59.683 50.000 0.14 0.00 0.00 3.71
48 49 1.126846 GAACGAACGAACATGCAGAGG 59.873 52.381 0.14 0.00 0.00 3.69
49 50 1.201704 CGAACGAACGAACATGCAGAG 60.202 52.381 0.14 0.00 35.09 3.35
50 51 0.781787 CGAACGAACGAACATGCAGA 59.218 50.000 0.14 0.00 35.09 4.26
51 52 0.179250 CCGAACGAACGAACATGCAG 60.179 55.000 0.14 0.00 35.09 4.41
52 53 0.597898 TCCGAACGAACGAACATGCA 60.598 50.000 0.14 0.00 35.09 3.96
53 54 0.509499 TTCCGAACGAACGAACATGC 59.491 50.000 0.14 0.00 35.09 4.06
54 55 1.790623 ACTTCCGAACGAACGAACATG 59.209 47.619 0.14 0.00 35.09 3.21
55 56 2.144482 ACTTCCGAACGAACGAACAT 57.856 45.000 0.14 0.00 35.09 2.71
56 57 2.033299 ACTACTTCCGAACGAACGAACA 59.967 45.455 0.14 0.00 35.09 3.18
57 58 2.654056 GACTACTTCCGAACGAACGAAC 59.346 50.000 0.14 0.00 35.09 3.95
58 59 2.662791 CGACTACTTCCGAACGAACGAA 60.663 50.000 0.14 0.00 35.09 3.85
59 60 1.136252 CGACTACTTCCGAACGAACGA 60.136 52.381 0.14 0.00 35.09 3.85
60 61 1.136252 TCGACTACTTCCGAACGAACG 60.136 52.381 0.00 0.00 0.00 3.95
61 62 2.237526 GTCGACTACTTCCGAACGAAC 58.762 52.381 8.70 0.00 36.50 3.95
62 63 1.872952 TGTCGACTACTTCCGAACGAA 59.127 47.619 17.92 0.00 36.50 3.85
63 64 1.462283 CTGTCGACTACTTCCGAACGA 59.538 52.381 17.92 0.00 36.50 3.85
64 65 1.462283 TCTGTCGACTACTTCCGAACG 59.538 52.381 17.92 0.00 36.50 3.95
65 66 2.728535 GCTCTGTCGACTACTTCCGAAC 60.729 54.545 17.92 0.00 36.50 3.95
66 67 1.467734 GCTCTGTCGACTACTTCCGAA 59.532 52.381 17.92 0.00 36.50 4.30
67 68 1.085091 GCTCTGTCGACTACTTCCGA 58.915 55.000 17.92 1.41 0.00 4.55
68 69 1.062880 GAGCTCTGTCGACTACTTCCG 59.937 57.143 17.92 0.00 0.00 4.30
69 70 1.402613 GGAGCTCTGTCGACTACTTCC 59.597 57.143 17.92 12.93 0.00 3.46
70 71 1.062880 CGGAGCTCTGTCGACTACTTC 59.937 57.143 17.92 6.53 0.00 3.01
71 72 1.088306 CGGAGCTCTGTCGACTACTT 58.912 55.000 17.92 0.00 0.00 2.24
72 73 0.249676 TCGGAGCTCTGTCGACTACT 59.750 55.000 21.88 8.42 0.00 2.57
73 74 0.374410 GTCGGAGCTCTGTCGACTAC 59.626 60.000 26.66 13.44 46.49 2.73
74 75 2.764944 GTCGGAGCTCTGTCGACTA 58.235 57.895 26.66 6.09 46.49 2.59
75 76 3.580916 GTCGGAGCTCTGTCGACT 58.419 61.111 26.66 0.00 46.49 4.18
77 78 1.968704 ATATGTCGGAGCTCTGTCGA 58.031 50.000 21.88 15.26 0.00 4.20
78 79 4.427096 AATATATGTCGGAGCTCTGTCG 57.573 45.455 21.88 13.10 0.00 4.35
79 80 5.861251 CAGAAATATATGTCGGAGCTCTGTC 59.139 44.000 21.88 16.94 0.00 3.51
80 81 5.303078 ACAGAAATATATGTCGGAGCTCTGT 59.697 40.000 21.88 5.92 36.93 3.41
81 82 5.777802 ACAGAAATATATGTCGGAGCTCTG 58.222 41.667 16.98 16.98 35.12 3.35
82 83 6.019779 GACAGAAATATATGTCGGAGCTCT 57.980 41.667 14.64 0.00 37.96 4.09
90 91 7.971168 CCTATGGAGACGACAGAAATATATGTC 59.029 40.741 0.00 0.00 42.92 3.06
91 92 7.093727 CCCTATGGAGACGACAGAAATATATGT 60.094 40.741 0.00 0.00 32.62 2.29
92 93 7.261325 CCCTATGGAGACGACAGAAATATATG 58.739 42.308 0.00 0.00 0.00 1.78
93 94 6.127310 GCCCTATGGAGACGACAGAAATATAT 60.127 42.308 0.00 0.00 0.00 0.86
94 95 5.185249 GCCCTATGGAGACGACAGAAATATA 59.815 44.000 0.00 0.00 0.00 0.86
95 96 4.021016 GCCCTATGGAGACGACAGAAATAT 60.021 45.833 0.00 0.00 0.00 1.28
96 97 3.321111 GCCCTATGGAGACGACAGAAATA 59.679 47.826 0.00 0.00 0.00 1.40
97 98 2.103263 GCCCTATGGAGACGACAGAAAT 59.897 50.000 0.00 0.00 0.00 2.17
98 99 1.480954 GCCCTATGGAGACGACAGAAA 59.519 52.381 0.00 0.00 0.00 2.52
99 100 1.112113 GCCCTATGGAGACGACAGAA 58.888 55.000 0.00 0.00 0.00 3.02
100 101 1.101635 CGCCCTATGGAGACGACAGA 61.102 60.000 0.00 0.00 32.25 3.41
101 102 1.360551 CGCCCTATGGAGACGACAG 59.639 63.158 0.00 0.00 32.25 3.51
102 103 2.125326 CCGCCCTATGGAGACGACA 61.125 63.158 0.00 0.00 32.25 4.35
103 104 2.125961 ACCGCCCTATGGAGACGAC 61.126 63.158 0.00 0.00 32.25 4.34
104 105 2.125326 CACCGCCCTATGGAGACGA 61.125 63.158 0.00 0.00 32.25 4.20
105 106 2.076622 CTCACCGCCCTATGGAGACG 62.077 65.000 0.00 0.00 32.25 4.18
106 107 1.742768 CTCACCGCCCTATGGAGAC 59.257 63.158 0.00 0.00 32.25 3.36
107 108 1.457643 CCTCACCGCCCTATGGAGA 60.458 63.158 0.00 0.00 32.25 3.71
108 109 1.338136 AACCTCACCGCCCTATGGAG 61.338 60.000 0.00 0.00 0.00 3.86
109 110 0.031917 TAACCTCACCGCCCTATGGA 60.032 55.000 0.00 0.00 0.00 3.41
110 111 0.393077 CTAACCTCACCGCCCTATGG 59.607 60.000 0.00 0.00 0.00 2.74
111 112 1.120530 ACTAACCTCACCGCCCTATG 58.879 55.000 0.00 0.00 0.00 2.23
112 113 1.120530 CACTAACCTCACCGCCCTAT 58.879 55.000 0.00 0.00 0.00 2.57
113 114 0.251922 ACACTAACCTCACCGCCCTA 60.252 55.000 0.00 0.00 0.00 3.53
114 115 1.125711 AACACTAACCTCACCGCCCT 61.126 55.000 0.00 0.00 0.00 5.19
115 116 0.250597 AAACACTAACCTCACCGCCC 60.251 55.000 0.00 0.00 0.00 6.13
116 117 1.154197 GAAACACTAACCTCACCGCC 58.846 55.000 0.00 0.00 0.00 6.13
117 118 2.165319 AGAAACACTAACCTCACCGC 57.835 50.000 0.00 0.00 0.00 5.68
118 119 3.463944 ACAAGAAACACTAACCTCACCG 58.536 45.455 0.00 0.00 0.00 4.94
119 120 4.448210 TGACAAGAAACACTAACCTCACC 58.552 43.478 0.00 0.00 0.00 4.02
120 121 5.527582 ACATGACAAGAAACACTAACCTCAC 59.472 40.000 0.00 0.00 0.00 3.51
121 122 5.680619 ACATGACAAGAAACACTAACCTCA 58.319 37.500 0.00 0.00 0.00 3.86
122 123 6.128526 GCTACATGACAAGAAACACTAACCTC 60.129 42.308 0.00 0.00 0.00 3.85
123 124 5.701290 GCTACATGACAAGAAACACTAACCT 59.299 40.000 0.00 0.00 0.00 3.50
124 125 5.389516 CGCTACATGACAAGAAACACTAACC 60.390 44.000 0.00 0.00 0.00 2.85
125 126 5.404366 TCGCTACATGACAAGAAACACTAAC 59.596 40.000 0.00 0.00 0.00 2.34
126 127 5.534407 TCGCTACATGACAAGAAACACTAA 58.466 37.500 0.00 0.00 0.00 2.24
127 128 5.048294 TCTCGCTACATGACAAGAAACACTA 60.048 40.000 0.00 0.00 0.00 2.74
128 129 3.990092 TCGCTACATGACAAGAAACACT 58.010 40.909 0.00 0.00 0.00 3.55
129 130 3.987868 TCTCGCTACATGACAAGAAACAC 59.012 43.478 0.00 0.00 0.00 3.32
130 131 4.251543 TCTCGCTACATGACAAGAAACA 57.748 40.909 0.00 0.00 0.00 2.83
131 132 5.786401 AATCTCGCTACATGACAAGAAAC 57.214 39.130 0.00 0.00 0.00 2.78
132 133 5.931724 TCAAATCTCGCTACATGACAAGAAA 59.068 36.000 0.00 0.00 0.00 2.52
133 134 5.478407 TCAAATCTCGCTACATGACAAGAA 58.522 37.500 0.00 0.00 0.00 2.52
134 135 5.072040 TCAAATCTCGCTACATGACAAGA 57.928 39.130 0.00 0.00 0.00 3.02
135 136 5.980698 ATCAAATCTCGCTACATGACAAG 57.019 39.130 0.00 0.00 0.00 3.16
136 137 9.196552 CTAATATCAAATCTCGCTACATGACAA 57.803 33.333 0.00 0.00 0.00 3.18
137 138 7.814587 CCTAATATCAAATCTCGCTACATGACA 59.185 37.037 0.00 0.00 0.00 3.58
138 139 7.815068 ACCTAATATCAAATCTCGCTACATGAC 59.185 37.037 0.00 0.00 0.00 3.06
139 140 7.814587 CACCTAATATCAAATCTCGCTACATGA 59.185 37.037 0.00 0.00 0.00 3.07
140 141 7.412346 GCACCTAATATCAAATCTCGCTACATG 60.412 40.741 0.00 0.00 0.00 3.21
141 142 6.591834 GCACCTAATATCAAATCTCGCTACAT 59.408 38.462 0.00 0.00 0.00 2.29
142 143 5.926542 GCACCTAATATCAAATCTCGCTACA 59.073 40.000 0.00 0.00 0.00 2.74
143 144 6.159988 AGCACCTAATATCAAATCTCGCTAC 58.840 40.000 0.00 0.00 0.00 3.58
144 145 6.346477 AGCACCTAATATCAAATCTCGCTA 57.654 37.500 0.00 0.00 0.00 4.26
145 146 5.220710 AGCACCTAATATCAAATCTCGCT 57.779 39.130 0.00 0.00 0.00 4.93
146 147 5.388890 CGAAGCACCTAATATCAAATCTCGC 60.389 44.000 0.00 0.00 0.00 5.03
147 148 5.920840 TCGAAGCACCTAATATCAAATCTCG 59.079 40.000 0.00 0.00 0.00 4.04
148 149 7.897575 ATCGAAGCACCTAATATCAAATCTC 57.102 36.000 0.00 0.00 0.00 2.75
149 150 8.153550 AGAATCGAAGCACCTAATATCAAATCT 58.846 33.333 0.00 0.00 0.00 2.40
150 151 8.316640 AGAATCGAAGCACCTAATATCAAATC 57.683 34.615 0.00 0.00 0.00 2.17
151 152 9.950496 ATAGAATCGAAGCACCTAATATCAAAT 57.050 29.630 0.00 0.00 0.00 2.32
152 153 9.208022 CATAGAATCGAAGCACCTAATATCAAA 57.792 33.333 0.00 0.00 0.00 2.69
153 154 8.585018 TCATAGAATCGAAGCACCTAATATCAA 58.415 33.333 0.00 0.00 0.00 2.57
154 155 8.122472 TCATAGAATCGAAGCACCTAATATCA 57.878 34.615 0.00 0.00 0.00 2.15
155 156 8.988064 TTCATAGAATCGAAGCACCTAATATC 57.012 34.615 0.00 0.00 0.00 1.63
156 157 9.429359 CTTTCATAGAATCGAAGCACCTAATAT 57.571 33.333 0.00 0.00 0.00 1.28
157 158 8.638873 TCTTTCATAGAATCGAAGCACCTAATA 58.361 33.333 0.00 0.00 0.00 0.98
158 159 7.500992 TCTTTCATAGAATCGAAGCACCTAAT 58.499 34.615 0.00 0.00 0.00 1.73
159 160 6.873997 TCTTTCATAGAATCGAAGCACCTAA 58.126 36.000 0.00 0.00 0.00 2.69
160 161 6.096987 ACTCTTTCATAGAATCGAAGCACCTA 59.903 38.462 0.00 0.00 30.91 3.08
161 162 5.105146 ACTCTTTCATAGAATCGAAGCACCT 60.105 40.000 0.00 0.00 30.91 4.00
162 163 5.112686 ACTCTTTCATAGAATCGAAGCACC 58.887 41.667 0.00 0.00 30.91 5.01
163 164 6.311445 TGAACTCTTTCATAGAATCGAAGCAC 59.689 38.462 0.00 0.00 36.79 4.40
164 165 6.398095 TGAACTCTTTCATAGAATCGAAGCA 58.602 36.000 0.00 0.00 36.79 3.91
165 166 6.893958 TGAACTCTTTCATAGAATCGAAGC 57.106 37.500 0.00 0.00 36.79 3.86
166 167 9.699985 CATTTGAACTCTTTCATAGAATCGAAG 57.300 33.333 0.00 0.00 41.50 3.79
167 168 8.177663 GCATTTGAACTCTTTCATAGAATCGAA 58.822 33.333 0.00 0.00 41.50 3.71
168 169 7.464577 CGCATTTGAACTCTTTCATAGAATCGA 60.465 37.037 0.00 0.00 41.50 3.59
169 170 6.626488 CGCATTTGAACTCTTTCATAGAATCG 59.374 38.462 0.00 0.00 41.50 3.34
170 171 7.637907 GTCGCATTTGAACTCTTTCATAGAATC 59.362 37.037 0.00 0.00 41.50 2.52
171 172 7.467623 GTCGCATTTGAACTCTTTCATAGAAT 58.532 34.615 0.00 0.00 41.50 2.40
172 173 6.401047 CGTCGCATTTGAACTCTTTCATAGAA 60.401 38.462 0.00 0.00 41.50 2.10
173 174 5.062183 CGTCGCATTTGAACTCTTTCATAGA 59.938 40.000 0.00 0.00 41.50 1.98
174 175 5.062183 TCGTCGCATTTGAACTCTTTCATAG 59.938 40.000 0.00 0.00 41.50 2.23
175 176 4.926832 TCGTCGCATTTGAACTCTTTCATA 59.073 37.500 0.00 0.00 41.50 2.15
176 177 3.745975 TCGTCGCATTTGAACTCTTTCAT 59.254 39.130 0.00 0.00 41.50 2.57
177 178 3.127589 TCGTCGCATTTGAACTCTTTCA 58.872 40.909 0.00 0.00 40.14 2.69
178 179 3.788434 TCGTCGCATTTGAACTCTTTC 57.212 42.857 0.00 0.00 0.00 2.62
179 180 4.466828 CAATCGTCGCATTTGAACTCTTT 58.533 39.130 0.00 0.00 0.00 2.52
180 181 3.667960 GCAATCGTCGCATTTGAACTCTT 60.668 43.478 6.59 0.00 0.00 2.85
181 182 2.159653 GCAATCGTCGCATTTGAACTCT 60.160 45.455 6.59 0.00 0.00 3.24
182 183 2.169179 GCAATCGTCGCATTTGAACTC 58.831 47.619 6.59 0.00 0.00 3.01
183 184 1.464023 CGCAATCGTCGCATTTGAACT 60.464 47.619 6.59 0.00 0.00 3.01
184 185 0.900547 CGCAATCGTCGCATTTGAAC 59.099 50.000 6.59 0.00 0.00 3.18
185 186 0.793250 TCGCAATCGTCGCATTTGAA 59.207 45.000 6.59 0.00 36.96 2.69
186 187 0.094558 GTCGCAATCGTCGCATTTGA 59.905 50.000 6.59 0.00 36.96 2.69
187 188 0.095245 AGTCGCAATCGTCGCATTTG 59.905 50.000 0.00 0.00 36.96 2.32
188 189 0.370273 GAGTCGCAATCGTCGCATTT 59.630 50.000 0.00 0.00 36.96 2.32
189 190 1.421410 GGAGTCGCAATCGTCGCATT 61.421 55.000 0.00 0.00 36.96 3.56
190 191 1.878522 GGAGTCGCAATCGTCGCAT 60.879 57.895 0.00 0.00 36.96 4.73
191 192 2.506217 GGAGTCGCAATCGTCGCA 60.506 61.111 0.00 0.00 36.96 5.10
192 193 2.506217 TGGAGTCGCAATCGTCGC 60.506 61.111 0.00 0.00 36.96 5.19
193 194 1.874019 CCTGGAGTCGCAATCGTCG 60.874 63.158 0.00 0.00 36.96 5.12
194 195 0.802607 GTCCTGGAGTCGCAATCGTC 60.803 60.000 0.00 0.00 36.96 4.20
195 196 1.215647 GTCCTGGAGTCGCAATCGT 59.784 57.895 0.00 0.00 36.96 3.73
196 197 1.874019 CGTCCTGGAGTCGCAATCG 60.874 63.158 0.00 0.00 0.00 3.34
197 198 4.094684 CGTCCTGGAGTCGCAATC 57.905 61.111 0.00 0.00 0.00 2.67
202 203 1.722677 GACTAGCGTCCTGGAGTCG 59.277 63.158 0.00 0.00 33.98 4.18
211 212 1.823610 ACACCCTTAAGGACTAGCGTC 59.176 52.381 23.74 0.00 39.89 5.19
212 213 1.549170 CACACCCTTAAGGACTAGCGT 59.451 52.381 23.74 8.03 39.89 5.07
213 214 1.549170 ACACACCCTTAAGGACTAGCG 59.451 52.381 23.74 7.36 39.89 4.26
214 215 3.697619 AACACACCCTTAAGGACTAGC 57.302 47.619 23.74 0.00 39.89 3.42
215 216 4.202430 ACCAAACACACCCTTAAGGACTAG 60.202 45.833 23.74 12.02 39.89 2.57
216 217 3.717913 ACCAAACACACCCTTAAGGACTA 59.282 43.478 23.74 0.00 39.89 2.59
217 218 2.512476 ACCAAACACACCCTTAAGGACT 59.488 45.455 23.74 4.40 39.89 3.85
218 219 2.940158 ACCAAACACACCCTTAAGGAC 58.060 47.619 23.74 0.00 39.89 3.85
219 220 3.292460 CAACCAAACACACCCTTAAGGA 58.708 45.455 23.74 0.00 39.89 3.36
220 221 2.364002 CCAACCAAACACACCCTTAAGG 59.636 50.000 15.14 15.14 43.78 2.69
221 222 2.364002 CCCAACCAAACACACCCTTAAG 59.636 50.000 0.00 0.00 0.00 1.85
222 223 2.389715 CCCAACCAAACACACCCTTAA 58.610 47.619 0.00 0.00 0.00 1.85
223 224 1.411787 CCCCAACCAAACACACCCTTA 60.412 52.381 0.00 0.00 0.00 2.69
224 225 0.689412 CCCCAACCAAACACACCCTT 60.689 55.000 0.00 0.00 0.00 3.95
225 226 1.075600 CCCCAACCAAACACACCCT 60.076 57.895 0.00 0.00 0.00 4.34
226 227 0.688087 TTCCCCAACCAAACACACCC 60.688 55.000 0.00 0.00 0.00 4.61
227 228 1.069978 CATTCCCCAACCAAACACACC 59.930 52.381 0.00 0.00 0.00 4.16
228 229 2.035632 TCATTCCCCAACCAAACACAC 58.964 47.619 0.00 0.00 0.00 3.82
229 230 2.461300 TCATTCCCCAACCAAACACA 57.539 45.000 0.00 0.00 0.00 3.72
230 231 2.698274 ACTTCATTCCCCAACCAAACAC 59.302 45.455 0.00 0.00 0.00 3.32
231 232 3.039252 ACTTCATTCCCCAACCAAACA 57.961 42.857 0.00 0.00 0.00 2.83
232 233 4.403734 TCTACTTCATTCCCCAACCAAAC 58.596 43.478 0.00 0.00 0.00 2.93
233 234 4.733077 TCTACTTCATTCCCCAACCAAA 57.267 40.909 0.00 0.00 0.00 3.28
234 235 4.733077 TTCTACTTCATTCCCCAACCAA 57.267 40.909 0.00 0.00 0.00 3.67
235 236 4.044065 ACATTCTACTTCATTCCCCAACCA 59.956 41.667 0.00 0.00 0.00 3.67
236 237 4.600062 ACATTCTACTTCATTCCCCAACC 58.400 43.478 0.00 0.00 0.00 3.77
237 238 6.183360 CGTTACATTCTACTTCATTCCCCAAC 60.183 42.308 0.00 0.00 0.00 3.77
238 239 5.878116 CGTTACATTCTACTTCATTCCCCAA 59.122 40.000 0.00 0.00 0.00 4.12
239 240 5.046159 ACGTTACATTCTACTTCATTCCCCA 60.046 40.000 0.00 0.00 0.00 4.96
240 241 5.425630 ACGTTACATTCTACTTCATTCCCC 58.574 41.667 0.00 0.00 0.00 4.81
241 242 6.103997 TGACGTTACATTCTACTTCATTCCC 58.896 40.000 0.00 0.00 0.00 3.97
242 243 7.254455 CCATGACGTTACATTCTACTTCATTCC 60.254 40.741 0.00 0.00 32.82 3.01
243 244 7.277981 ACCATGACGTTACATTCTACTTCATTC 59.722 37.037 0.00 0.00 32.82 2.67
244 245 7.103641 ACCATGACGTTACATTCTACTTCATT 58.896 34.615 0.00 0.00 32.82 2.57
245 246 6.640518 ACCATGACGTTACATTCTACTTCAT 58.359 36.000 0.00 0.00 34.69 2.57
246 247 6.032956 ACCATGACGTTACATTCTACTTCA 57.967 37.500 0.00 0.00 0.00 3.02
247 248 6.035758 GGAACCATGACGTTACATTCTACTTC 59.964 42.308 0.00 0.00 0.00 3.01
248 249 5.873164 GGAACCATGACGTTACATTCTACTT 59.127 40.000 0.00 0.00 0.00 2.24
249 250 5.046878 TGGAACCATGACGTTACATTCTACT 60.047 40.000 0.00 0.00 31.44 2.57
250 251 5.172934 TGGAACCATGACGTTACATTCTAC 58.827 41.667 0.00 0.00 31.44 2.59
251 252 5.408880 TGGAACCATGACGTTACATTCTA 57.591 39.130 0.00 0.00 31.44 2.10
252 253 4.280436 TGGAACCATGACGTTACATTCT 57.720 40.909 0.00 0.00 31.44 2.40
256 257 3.244596 TGGAATGGAACCATGACGTTACA 60.245 43.478 7.12 2.67 40.81 2.41
257 258 3.126343 GTGGAATGGAACCATGACGTTAC 59.874 47.826 7.12 0.00 39.69 2.50
258 259 3.008594 AGTGGAATGGAACCATGACGTTA 59.991 43.478 7.12 0.00 39.69 3.18
259 260 2.159382 GTGGAATGGAACCATGACGTT 58.841 47.619 7.12 0.00 39.69 3.99
260 261 1.351017 AGTGGAATGGAACCATGACGT 59.649 47.619 7.12 0.00 39.69 4.34
261 262 2.113860 AGTGGAATGGAACCATGACG 57.886 50.000 7.12 0.00 39.69 4.35
262 263 4.487714 TCTAGTGGAATGGAACCATGAC 57.512 45.455 7.12 5.23 39.69 3.06
263 264 5.715439 ATTCTAGTGGAATGGAACCATGA 57.285 39.130 7.12 0.00 42.46 3.07
273 274 4.292306 AGAACCAACCCATTCTAGTGGAAT 59.708 41.667 0.91 0.00 44.66 3.01
274 275 3.655777 AGAACCAACCCATTCTAGTGGAA 59.344 43.478 0.91 0.00 42.02 3.53
275 276 3.009033 CAGAACCAACCCATTCTAGTGGA 59.991 47.826 0.91 0.00 42.02 4.02
276 277 3.347216 CAGAACCAACCCATTCTAGTGG 58.653 50.000 0.00 0.00 39.05 4.00
277 278 3.347216 CCAGAACCAACCCATTCTAGTG 58.653 50.000 0.00 0.00 33.35 2.74
278 279 2.290960 GCCAGAACCAACCCATTCTAGT 60.291 50.000 0.00 0.00 33.35 2.57
279 280 2.369394 GCCAGAACCAACCCATTCTAG 58.631 52.381 0.00 0.00 33.35 2.43
280 281 1.339631 CGCCAGAACCAACCCATTCTA 60.340 52.381 0.00 0.00 33.35 2.10
281 282 0.609131 CGCCAGAACCAACCCATTCT 60.609 55.000 0.00 0.00 35.51 2.40
282 283 1.595093 CCGCCAGAACCAACCCATTC 61.595 60.000 0.00 0.00 0.00 2.67
283 284 1.606313 CCGCCAGAACCAACCCATT 60.606 57.895 0.00 0.00 0.00 3.16
284 285 2.035626 CCGCCAGAACCAACCCAT 59.964 61.111 0.00 0.00 0.00 4.00
285 286 4.278513 CCCGCCAGAACCAACCCA 62.279 66.667 0.00 0.00 0.00 4.51
286 287 3.802852 AACCCGCCAGAACCAACCC 62.803 63.158 0.00 0.00 0.00 4.11
287 288 2.203437 AACCCGCCAGAACCAACC 60.203 61.111 0.00 0.00 0.00 3.77
288 289 2.265904 GGAACCCGCCAGAACCAAC 61.266 63.158 0.00 0.00 0.00 3.77
289 290 2.114411 GGAACCCGCCAGAACCAA 59.886 61.111 0.00 0.00 0.00 3.67
290 291 4.323477 CGGAACCCGCCAGAACCA 62.323 66.667 0.00 0.00 41.17 3.67
300 301 2.597510 GCCCCATATGCGGAACCC 60.598 66.667 10.74 0.00 0.00 4.11
315 316 6.894767 ATTCCCTAGAACGGCATATTCGCC 62.895 50.000 0.00 0.00 40.35 5.54
316 317 1.000506 TCCCTAGAACGGCATATTCGC 59.999 52.381 0.00 0.00 0.00 4.70
317 318 3.380479 TTCCCTAGAACGGCATATTCG 57.620 47.619 0.00 0.00 0.00 3.34
318 319 4.691216 GTCATTCCCTAGAACGGCATATTC 59.309 45.833 0.00 0.00 33.97 1.75
319 320 4.348168 AGTCATTCCCTAGAACGGCATATT 59.652 41.667 0.00 0.00 33.97 1.28
320 321 3.904339 AGTCATTCCCTAGAACGGCATAT 59.096 43.478 0.00 0.00 33.97 1.78
321 322 3.305720 AGTCATTCCCTAGAACGGCATA 58.694 45.455 0.00 0.00 33.97 3.14
322 323 2.119495 AGTCATTCCCTAGAACGGCAT 58.881 47.619 0.00 0.00 33.97 4.40
323 324 1.568504 AGTCATTCCCTAGAACGGCA 58.431 50.000 0.00 0.00 33.97 5.69
324 325 2.280628 CAAGTCATTCCCTAGAACGGC 58.719 52.381 0.00 0.00 33.97 5.68
325 326 2.236395 ACCAAGTCATTCCCTAGAACGG 59.764 50.000 0.00 0.00 33.97 4.44
326 327 3.611766 ACCAAGTCATTCCCTAGAACG 57.388 47.619 0.00 0.00 33.97 3.95
327 328 4.019231 AGGAACCAAGTCATTCCCTAGAAC 60.019 45.833 0.00 0.00 44.78 3.01
328 329 4.019321 CAGGAACCAAGTCATTCCCTAGAA 60.019 45.833 0.00 0.00 44.78 2.10
329 330 3.519510 CAGGAACCAAGTCATTCCCTAGA 59.480 47.826 0.00 0.00 44.78 2.43
330 331 3.264450 ACAGGAACCAAGTCATTCCCTAG 59.736 47.826 0.00 0.00 44.78 3.02
331 332 3.256704 ACAGGAACCAAGTCATTCCCTA 58.743 45.455 0.00 0.00 44.78 3.53
332 333 2.065799 ACAGGAACCAAGTCATTCCCT 58.934 47.619 0.00 0.00 44.78 4.20
333 334 2.586648 ACAGGAACCAAGTCATTCCC 57.413 50.000 0.00 0.00 44.78 3.97
334 335 3.756117 AGAACAGGAACCAAGTCATTCC 58.244 45.455 0.00 0.00 44.14 3.01
335 336 4.083802 CGAAGAACAGGAACCAAGTCATTC 60.084 45.833 0.00 0.00 0.00 2.67
336 337 3.815401 CGAAGAACAGGAACCAAGTCATT 59.185 43.478 0.00 0.00 0.00 2.57
337 338 3.071023 TCGAAGAACAGGAACCAAGTCAT 59.929 43.478 0.00 0.00 0.00 3.06
338 339 2.432874 TCGAAGAACAGGAACCAAGTCA 59.567 45.455 0.00 0.00 0.00 3.41
339 340 2.801111 GTCGAAGAACAGGAACCAAGTC 59.199 50.000 0.00 0.00 39.69 3.01
340 341 2.835027 GTCGAAGAACAGGAACCAAGT 58.165 47.619 0.00 0.00 39.69 3.16
352 353 1.301423 CGTTTGGTTGGGTCGAAGAA 58.699 50.000 0.00 0.00 39.69 2.52
353 354 1.161563 GCGTTTGGTTGGGTCGAAGA 61.162 55.000 0.00 0.00 0.00 2.87
354 355 1.281656 GCGTTTGGTTGGGTCGAAG 59.718 57.895 0.00 0.00 0.00 3.79
355 356 2.188161 GGCGTTTGGTTGGGTCGAA 61.188 57.895 0.00 0.00 0.00 3.71
356 357 2.592287 GGCGTTTGGTTGGGTCGA 60.592 61.111 0.00 0.00 0.00 4.20
357 358 2.902846 TGGCGTTTGGTTGGGTCG 60.903 61.111 0.00 0.00 0.00 4.79
358 359 1.104577 TTCTGGCGTTTGGTTGGGTC 61.105 55.000 0.00 0.00 0.00 4.46
359 360 1.076632 TTCTGGCGTTTGGTTGGGT 60.077 52.632 0.00 0.00 0.00 4.51
360 361 1.362355 GTTCTGGCGTTTGGTTGGG 59.638 57.895 0.00 0.00 0.00 4.12
361 362 1.362355 GGTTCTGGCGTTTGGTTGG 59.638 57.895 0.00 0.00 0.00 3.77
362 363 0.248866 GTGGTTCTGGCGTTTGGTTG 60.249 55.000 0.00 0.00 0.00 3.77
363 364 1.388837 GGTGGTTCTGGCGTTTGGTT 61.389 55.000 0.00 0.00 0.00 3.67
364 365 1.826487 GGTGGTTCTGGCGTTTGGT 60.826 57.895 0.00 0.00 0.00 3.67
365 366 2.561037 GGGTGGTTCTGGCGTTTGG 61.561 63.158 0.00 0.00 0.00 3.28
366 367 2.561037 GGGGTGGTTCTGGCGTTTG 61.561 63.158 0.00 0.00 0.00 2.93
367 368 2.203437 GGGGTGGTTCTGGCGTTT 60.203 61.111 0.00 0.00 0.00 3.60
368 369 3.175710 AGGGGTGGTTCTGGCGTT 61.176 61.111 0.00 0.00 0.00 4.84
369 370 3.953775 CAGGGGTGGTTCTGGCGT 61.954 66.667 0.00 0.00 0.00 5.68
370 371 4.722700 CCAGGGGTGGTTCTGGCG 62.723 72.222 0.00 0.00 43.22 5.69
371 372 4.366684 CCCAGGGGTGGTTCTGGC 62.367 72.222 0.00 0.00 46.79 4.85
373 374 3.579302 TGCCCAGGGGTGGTTCTG 61.579 66.667 7.91 0.00 37.65 3.02
374 375 3.580319 GTGCCCAGGGGTGGTTCT 61.580 66.667 7.91 0.00 37.65 3.01
386 387 2.206182 AATAGGTTGGTCCCGTGCCC 62.206 60.000 0.00 0.00 36.75 5.36
387 388 0.542805 TAATAGGTTGGTCCCGTGCC 59.457 55.000 0.00 0.00 36.75 5.01
388 389 1.660167 GTAATAGGTTGGTCCCGTGC 58.340 55.000 0.00 0.00 36.75 5.34
389 390 1.205417 ACGTAATAGGTTGGTCCCGTG 59.795 52.381 0.00 0.00 36.75 4.94
390 391 1.560505 ACGTAATAGGTTGGTCCCGT 58.439 50.000 0.00 0.00 36.75 5.28
391 392 2.543641 GAACGTAATAGGTTGGTCCCG 58.456 52.381 2.86 0.00 36.75 5.14
392 393 2.236893 TGGAACGTAATAGGTTGGTCCC 59.763 50.000 2.86 0.00 36.75 4.46
393 394 3.055602 AGTGGAACGTAATAGGTTGGTCC 60.056 47.826 2.86 0.00 45.86 4.46
394 395 4.198028 AGTGGAACGTAATAGGTTGGTC 57.802 45.455 2.86 0.00 45.86 4.02
395 396 4.040706 TCAAGTGGAACGTAATAGGTTGGT 59.959 41.667 2.86 0.00 45.86 3.67
396 397 4.571919 TCAAGTGGAACGTAATAGGTTGG 58.428 43.478 2.86 0.00 45.86 3.77
397 398 5.872617 TCATCAAGTGGAACGTAATAGGTTG 59.127 40.000 2.86 0.00 45.86 3.77
398 399 5.873164 GTCATCAAGTGGAACGTAATAGGTT 59.127 40.000 0.00 0.00 45.86 3.50
399 400 5.416947 GTCATCAAGTGGAACGTAATAGGT 58.583 41.667 0.00 0.00 45.86 3.08
400 401 4.809426 GGTCATCAAGTGGAACGTAATAGG 59.191 45.833 0.00 0.00 45.86 2.57
401 402 5.520288 CAGGTCATCAAGTGGAACGTAATAG 59.480 44.000 0.00 0.00 45.86 1.73
402 403 5.186215 TCAGGTCATCAAGTGGAACGTAATA 59.814 40.000 0.00 0.00 45.86 0.98
403 404 4.020573 TCAGGTCATCAAGTGGAACGTAAT 60.021 41.667 0.00 0.00 45.86 1.89
404 405 3.322541 TCAGGTCATCAAGTGGAACGTAA 59.677 43.478 0.00 0.00 45.86 3.18
405 406 2.894765 TCAGGTCATCAAGTGGAACGTA 59.105 45.455 0.00 0.00 45.86 3.57
406 407 1.691976 TCAGGTCATCAAGTGGAACGT 59.308 47.619 0.00 0.00 45.86 3.99
407 408 2.455674 TCAGGTCATCAAGTGGAACG 57.544 50.000 0.00 0.00 45.86 3.95
408 409 3.744660 AGTTCAGGTCATCAAGTGGAAC 58.255 45.455 0.00 0.00 34.82 3.62
409 410 5.560722 TTAGTTCAGGTCATCAAGTGGAA 57.439 39.130 0.00 0.00 0.00 3.53
410 411 5.163248 TGTTTAGTTCAGGTCATCAAGTGGA 60.163 40.000 0.00 0.00 0.00 4.02
411 412 5.049405 GTGTTTAGTTCAGGTCATCAAGTGG 60.049 44.000 0.00 0.00 0.00 4.00
412 413 5.527214 TGTGTTTAGTTCAGGTCATCAAGTG 59.473 40.000 0.00 0.00 0.00 3.16
413 414 5.680619 TGTGTTTAGTTCAGGTCATCAAGT 58.319 37.500 0.00 0.00 0.00 3.16
414 415 6.427853 TCATGTGTTTAGTTCAGGTCATCAAG 59.572 38.462 0.00 0.00 0.00 3.02
415 416 6.295249 TCATGTGTTTAGTTCAGGTCATCAA 58.705 36.000 0.00 0.00 0.00 2.57
416 417 5.863965 TCATGTGTTTAGTTCAGGTCATCA 58.136 37.500 0.00 0.00 0.00 3.07
417 418 6.992063 ATCATGTGTTTAGTTCAGGTCATC 57.008 37.500 0.00 0.00 0.00 2.92
418 419 7.554118 CCTTATCATGTGTTTAGTTCAGGTCAT 59.446 37.037 0.00 0.00 0.00 3.06
419 420 6.878923 CCTTATCATGTGTTTAGTTCAGGTCA 59.121 38.462 0.00 0.00 0.00 4.02
420 421 6.316390 CCCTTATCATGTGTTTAGTTCAGGTC 59.684 42.308 0.00 0.00 0.00 3.85
421 422 6.180472 CCCTTATCATGTGTTTAGTTCAGGT 58.820 40.000 0.00 0.00 0.00 4.00
422 423 5.066505 GCCCTTATCATGTGTTTAGTTCAGG 59.933 44.000 0.00 0.00 0.00 3.86
423 424 5.647658 TGCCCTTATCATGTGTTTAGTTCAG 59.352 40.000 0.00 0.00 0.00 3.02
424 425 5.414454 GTGCCCTTATCATGTGTTTAGTTCA 59.586 40.000 0.00 0.00 0.00 3.18
425 426 5.447279 CGTGCCCTTATCATGTGTTTAGTTC 60.447 44.000 0.00 0.00 0.00 3.01
426 427 4.394920 CGTGCCCTTATCATGTGTTTAGTT 59.605 41.667 0.00 0.00 0.00 2.24
427 428 3.938963 CGTGCCCTTATCATGTGTTTAGT 59.061 43.478 0.00 0.00 0.00 2.24
428 429 3.938963 ACGTGCCCTTATCATGTGTTTAG 59.061 43.478 0.00 0.00 32.89 1.85
429 430 3.687212 CACGTGCCCTTATCATGTGTTTA 59.313 43.478 0.82 0.00 43.08 2.01
430 431 2.487762 CACGTGCCCTTATCATGTGTTT 59.512 45.455 0.82 0.00 43.08 2.83
431 432 2.083774 CACGTGCCCTTATCATGTGTT 58.916 47.619 0.82 0.00 43.08 3.32
432 433 1.737838 CACGTGCCCTTATCATGTGT 58.262 50.000 0.82 0.00 43.08 3.72
434 435 0.035534 TGCACGTGCCCTTATCATGT 60.036 50.000 35.72 0.00 41.18 3.21
435 436 0.378257 GTGCACGTGCCCTTATCATG 59.622 55.000 35.72 0.00 41.18 3.07
436 437 0.035534 TGTGCACGTGCCCTTATCAT 60.036 50.000 35.72 0.00 41.18 2.45
437 438 0.250510 TTGTGCACGTGCCCTTATCA 60.251 50.000 35.72 20.93 41.18 2.15
438 439 0.878416 TTTGTGCACGTGCCCTTATC 59.122 50.000 35.72 18.86 41.18 1.75
439 440 0.881118 CTTTGTGCACGTGCCCTTAT 59.119 50.000 35.72 0.00 41.18 1.73
440 441 0.179043 TCTTTGTGCACGTGCCCTTA 60.179 50.000 35.72 16.34 41.18 2.69
441 442 1.453015 TCTTTGTGCACGTGCCCTT 60.453 52.632 35.72 0.00 41.18 3.95
468 469 2.288666 GCTTGACCTTGCCGATGATAA 58.711 47.619 0.00 0.00 0.00 1.75
477 478 2.394563 GGAGCTCGCTTGACCTTGC 61.395 63.158 7.83 0.00 0.00 4.01
494 495 2.989173 TATCACCGCTCCCCTACCGG 62.989 65.000 0.00 0.00 46.97 5.28
512 514 4.865761 GTCGCCGATGCACCGCTA 62.866 66.667 0.00 0.00 37.32 4.26
516 518 4.796231 ACGAGTCGCCGATGCACC 62.796 66.667 13.59 0.00 37.32 5.01
521 523 2.341101 ACCAGAACGAGTCGCCGAT 61.341 57.895 13.59 0.00 0.00 4.18
528 530 2.818432 CCACTACTACACCAGAACGAGT 59.182 50.000 0.00 0.00 0.00 4.18
538 540 2.608752 CCACGGACAACCACTACTACAC 60.609 54.545 0.00 0.00 35.59 2.90
554 556 3.753272 ACATCAAGATTCTTTGACCACGG 59.247 43.478 5.34 0.00 39.68 4.94
586 589 8.850156 AGTCAAGTACAAAGCATCTTAAACATT 58.150 29.630 0.00 0.00 0.00 2.71
665 675 2.606272 GGATATCGTCGCCGTTCTTTTT 59.394 45.455 0.00 0.00 35.01 1.94
676 686 4.546570 TGCAGAGTTATTGGATATCGTCG 58.453 43.478 0.00 0.00 0.00 5.12
679 689 8.993121 AGTAAAATGCAGAGTTATTGGATATCG 58.007 33.333 0.00 0.00 0.00 2.92
697 714 7.372918 CGAAATGGTTGTTTTTGCAGTAAAATG 59.627 33.333 0.00 0.00 38.03 2.32
699 716 6.183360 CCGAAATGGTTGTTTTTGCAGTAAAA 60.183 34.615 0.00 0.00 36.51 1.52
775 793 6.939163 CAGGGGAATACAAATCTAGGATTCAG 59.061 42.308 0.00 0.00 0.00 3.02
784 802 5.015178 TGGAGAAACAGGGGAATACAAATCT 59.985 40.000 0.00 0.00 0.00 2.40
895 914 3.695825 GGGTGGAGGAGGAGGGGA 61.696 72.222 0.00 0.00 0.00 4.81
897 916 4.400251 ACGGGTGGAGGAGGAGGG 62.400 72.222 0.00 0.00 0.00 4.30
1115 1136 4.135153 ATCGAGCTCGCTGCCGTT 62.135 61.111 30.97 6.57 44.23 4.44
1177 1198 4.021104 CCTCGCATCCACTAATCCTATTGA 60.021 45.833 0.00 0.00 0.00 2.57
1494 1523 3.535561 CACGGGCTCAGAAATCATAAGT 58.464 45.455 0.00 0.00 0.00 2.24
1566 1596 5.188909 GCGAAAAGCTATAAAGTAACGAGC 58.811 41.667 0.00 0.00 44.04 5.03
1619 1649 2.196295 AGCTTCACGTATTCGAGAGC 57.804 50.000 0.00 4.90 37.85 4.09
2049 2079 6.070824 TGACAGAGCTCCAATAATCAGTTGTA 60.071 38.462 10.93 0.00 0.00 2.41
2204 2234 6.095580 TCAGAACTATTAGTTGTCGCAGAGAT 59.904 38.462 13.69 0.00 38.80 2.75
2355 2385 1.400142 CACGGTGTCACTGCAAAGAAA 59.600 47.619 11.91 0.00 0.00 2.52
2405 2435 4.141914 ACATGCTACAGAAGTACTAAGCCC 60.142 45.833 0.00 0.00 36.55 5.19
2433 2463 5.243060 CCATTGCATATCAATCTGGTGACAT 59.757 40.000 0.00 0.00 43.21 3.06
2505 2535 5.705441 TCCACTGCACAAGACCTTTAAATAG 59.295 40.000 0.00 0.00 0.00 1.73
2720 2750 5.057149 GTGTACCCTAGTTCCATATGCAAG 58.943 45.833 0.00 0.00 0.00 4.01
3237 3273 8.696410 TGCAAACTTCCTTTAGTTTAACTTTG 57.304 30.769 1.94 0.00 44.33 2.77
3243 3279 7.307751 CGAGACATGCAAACTTCCTTTAGTTTA 60.308 37.037 0.00 0.00 44.33 2.01
3269 3305 9.830294 GTGGTTGTATGGTATTTTTAGTTACAC 57.170 33.333 0.00 0.00 0.00 2.90
3566 3611 7.066645 TCCAGAGAAACATTATTCATGAAGCAG 59.933 37.037 14.54 6.38 36.24 4.24
3583 3628 5.425539 AGTCTCCCGATTTTATCCAGAGAAA 59.574 40.000 0.00 0.00 36.38 2.52
3589 3634 4.587684 GTCCTAGTCTCCCGATTTTATCCA 59.412 45.833 0.00 0.00 0.00 3.41
3621 3666 3.443099 TGACGATGATGATGACTCCAC 57.557 47.619 0.00 0.00 0.00 4.02
3624 3669 4.447054 GGACAATGACGATGATGATGACTC 59.553 45.833 0.00 0.00 0.00 3.36
3635 3680 1.475751 GGCATCTGGGACAATGACGAT 60.476 52.381 0.00 0.00 38.70 3.73
3654 3699 9.716507 CTACAACAATTATCATTTTTAGGACGG 57.283 33.333 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.