Multiple sequence alignment - TraesCS7D01G373000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G373000 chr7D 100.000 2737 0 0 1 2737 483296821 483299557 0.000000e+00 5055.0
1 TraesCS7D01G373000 chr7A 86.145 2656 145 68 174 2717 549749301 549751845 0.000000e+00 2660.0
2 TraesCS7D01G373000 chr7A 86.082 194 13 10 1 188 549749071 549749256 2.150000e-46 196.0
3 TraesCS7D01G373000 chr7B 87.664 989 58 17 801 1758 508979160 508980115 0.000000e+00 1092.0
4 TraesCS7D01G373000 chr7B 91.337 658 30 12 2097 2737 508980886 508981533 0.000000e+00 874.0
5 TraesCS7D01G373000 chr7B 84.149 776 27 20 92 809 508977152 508977889 0.000000e+00 664.0
6 TraesCS7D01G373000 chr7B 90.517 232 17 5 1748 1976 508980136 508980365 4.430000e-78 302.0
7 TraesCS7D01G373000 chr6D 91.566 83 6 1 1642 1724 154359875 154359956 2.230000e-21 113.0
8 TraesCS7D01G373000 chr6B 91.566 83 6 1 1642 1724 277849034 277849115 2.230000e-21 113.0
9 TraesCS7D01G373000 chr5A 100.000 28 0 0 1592 1619 420120631 420120658 5.000000e-03 52.8
10 TraesCS7D01G373000 chr4B 100.000 28 0 0 1594 1621 176260820 176260847 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G373000 chr7D 483296821 483299557 2736 False 5055 5055 100.00000 1 2737 1 chr7D.!!$F1 2736
1 TraesCS7D01G373000 chr7A 549749071 549751845 2774 False 1428 2660 86.11350 1 2717 2 chr7A.!!$F1 2716
2 TraesCS7D01G373000 chr7B 508977152 508981533 4381 False 733 1092 88.41675 92 2737 4 chr7B.!!$F1 2645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 844 0.179145 GTACAGTCCATGTCCGTCCG 60.179 60.0 0.0 0.0 42.7 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 3512 0.326238 AGGAGGGAGGGCGTGAAATA 60.326 55.0 0.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.839946 AAAGATGGCGGCCATAGAGT 59.160 50.000 33.05 13.54 45.26 3.24
27 28 1.717032 AAGATGGCGGCCATAGAGTA 58.283 50.000 33.05 4.77 45.26 2.59
28 29 1.261480 AGATGGCGGCCATAGAGTAG 58.739 55.000 33.05 0.00 45.26 2.57
29 30 1.203063 AGATGGCGGCCATAGAGTAGA 60.203 52.381 33.05 3.10 45.26 2.59
30 31 1.203523 GATGGCGGCCATAGAGTAGAG 59.796 57.143 33.05 0.00 45.26 2.43
31 32 0.185175 TGGCGGCCATAGAGTAGAGA 59.815 55.000 19.77 0.00 0.00 3.10
32 33 0.885196 GGCGGCCATAGAGTAGAGAG 59.115 60.000 15.62 0.00 0.00 3.20
33 34 0.885196 GCGGCCATAGAGTAGAGAGG 59.115 60.000 2.24 0.00 0.00 3.69
39 40 3.761752 GCCATAGAGTAGAGAGGGACATC 59.238 52.174 0.00 0.00 0.00 3.06
74 75 5.106038 GGCGGTACTTTAATGCCTTTTACTT 60.106 40.000 0.00 0.00 42.44 2.24
76 77 7.361971 GGCGGTACTTTAATGCCTTTTACTTAA 60.362 37.037 0.00 0.00 42.44 1.85
77 78 7.482743 GCGGTACTTTAATGCCTTTTACTTAAC 59.517 37.037 0.00 0.00 0.00 2.01
81 82 8.700439 ACTTTAATGCCTTTTACTTAACTCCA 57.300 30.769 0.00 0.00 0.00 3.86
83 84 5.644977 AATGCCTTTTACTTAACTCCAGC 57.355 39.130 0.00 0.00 0.00 4.85
84 85 4.367039 TGCCTTTTACTTAACTCCAGCT 57.633 40.909 0.00 0.00 0.00 4.24
85 86 4.072131 TGCCTTTTACTTAACTCCAGCTG 58.928 43.478 6.78 6.78 0.00 4.24
87 88 4.327680 CCTTTTACTTAACTCCAGCTGCT 58.672 43.478 8.66 0.00 0.00 4.24
88 89 4.154918 CCTTTTACTTAACTCCAGCTGCTG 59.845 45.833 22.44 22.44 0.00 4.41
89 90 2.386661 TACTTAACTCCAGCTGCTGC 57.613 50.000 23.86 7.62 40.05 5.25
183 196 1.714899 CGCATTCTTAACAGGCCCCG 61.715 60.000 0.00 0.00 0.00 5.73
189 261 3.179888 TTAACAGGCCCCGCGTTCA 62.180 57.895 4.92 0.00 0.00 3.18
329 414 2.507992 CTCTCCGGCAGCAACGAG 60.508 66.667 0.00 0.00 0.00 4.18
330 415 3.997064 CTCTCCGGCAGCAACGAGG 62.997 68.421 0.00 0.00 0.00 4.63
372 457 2.242196 AGGACCGGATTGATTGAATGGT 59.758 45.455 9.46 0.00 0.00 3.55
374 459 3.447229 GGACCGGATTGATTGAATGGTTT 59.553 43.478 9.46 0.00 0.00 3.27
376 461 3.195396 ACCGGATTGATTGAATGGTTTGG 59.805 43.478 9.46 0.00 0.00 3.28
377 462 3.446873 CCGGATTGATTGAATGGTTTGGA 59.553 43.478 0.00 0.00 0.00 3.53
378 463 4.099881 CCGGATTGATTGAATGGTTTGGAT 59.900 41.667 0.00 0.00 0.00 3.41
379 464 5.301551 CCGGATTGATTGAATGGTTTGGATA 59.698 40.000 0.00 0.00 0.00 2.59
380 465 6.015180 CCGGATTGATTGAATGGTTTGGATAT 60.015 38.462 0.00 0.00 0.00 1.63
381 466 7.176515 CCGGATTGATTGAATGGTTTGGATATA 59.823 37.037 0.00 0.00 0.00 0.86
382 467 8.023128 CGGATTGATTGAATGGTTTGGATATAC 58.977 37.037 0.00 0.00 0.00 1.47
383 468 8.023128 GGATTGATTGAATGGTTTGGATATACG 58.977 37.037 0.00 0.00 0.00 3.06
488 585 2.776963 GGATAGGTGGGGTGGGGG 60.777 72.222 0.00 0.00 0.00 5.40
489 586 3.499029 GATAGGTGGGGTGGGGGC 61.499 72.222 0.00 0.00 0.00 5.80
490 587 4.052833 ATAGGTGGGGTGGGGGCT 62.053 66.667 0.00 0.00 0.00 5.19
535 661 3.120385 CGCGCTTGATGAGGTGCA 61.120 61.111 5.56 0.00 38.67 4.57
536 662 2.466982 CGCGCTTGATGAGGTGCAT 61.467 57.895 5.56 0.00 40.77 3.96
537 663 1.153597 CGCGCTTGATGAGGTGCATA 61.154 55.000 5.56 0.00 37.34 3.14
538 664 0.585357 GCGCTTGATGAGGTGCATAG 59.415 55.000 0.00 0.00 37.34 2.23
583 709 3.050275 GGCGTGTGGCTTCTGGTC 61.050 66.667 0.00 0.00 42.94 4.02
584 710 2.031163 GCGTGTGGCTTCTGGTCT 59.969 61.111 0.00 0.00 39.11 3.85
599 725 4.999310 TCTGGTCTTCTTCTCTCTACCAA 58.001 43.478 0.00 0.00 36.62 3.67
647 777 2.005451 AGTCGAGCAGTTCATGAATGC 58.995 47.619 23.82 23.82 40.29 3.56
648 778 1.063174 GTCGAGCAGTTCATGAATGCC 59.937 52.381 25.83 19.63 40.89 4.40
678 808 4.775058 TTTCGTCCAATTGTATTGTGGG 57.225 40.909 4.43 0.00 32.95 4.61
714 844 0.179145 GTACAGTCCATGTCCGTCCG 60.179 60.000 0.00 0.00 42.70 4.79
792 922 7.547227 CCAAAAGCAGGCTTTAATATTGTAGT 58.453 34.615 18.62 0.00 44.50 2.73
793 923 8.682710 CCAAAAGCAGGCTTTAATATTGTAGTA 58.317 33.333 18.62 0.00 44.50 1.82
823 2230 0.871722 TGTAATGTCACGCAGCAACC 59.128 50.000 0.00 0.00 0.00 3.77
910 2318 3.055094 ACTTCTGCCAGTCGATAAACCAT 60.055 43.478 0.00 0.00 0.00 3.55
1009 2421 0.025001 GCCGCGCACGCTATATTATG 59.975 55.000 13.70 0.00 39.32 1.90
1047 2459 1.372997 CTACGAGCACTGCACGGTT 60.373 57.895 22.24 7.37 45.87 4.44
1049 2461 2.758770 TACGAGCACTGCACGGTTCC 62.759 60.000 22.24 0.00 45.87 3.62
1052 2464 4.643387 GCACTGCACGGTTCCCCT 62.643 66.667 0.00 0.00 0.00 4.79
1053 2465 2.113139 CACTGCACGGTTCCCCTT 59.887 61.111 0.00 0.00 0.00 3.95
1081 2493 1.140852 CTCACAGGACTCAACCACCAA 59.859 52.381 0.00 0.00 0.00 3.67
1133 2545 3.522731 CTGCTCTCCGTCTCCCCG 61.523 72.222 0.00 0.00 0.00 5.73
1164 2576 1.610673 ACGGGAGCCTGTGATCTGT 60.611 57.895 0.00 0.00 33.73 3.41
1165 2577 0.324368 ACGGGAGCCTGTGATCTGTA 60.324 55.000 0.00 0.00 33.73 2.74
1166 2578 0.387202 CGGGAGCCTGTGATCTGTAG 59.613 60.000 0.00 0.00 0.00 2.74
1167 2579 1.490574 GGGAGCCTGTGATCTGTAGT 58.509 55.000 0.00 0.00 0.00 2.73
1169 2581 1.472376 GGAGCCTGTGATCTGTAGTGC 60.472 57.143 0.00 0.00 0.00 4.40
1170 2582 1.205655 GAGCCTGTGATCTGTAGTGCA 59.794 52.381 0.00 0.00 0.00 4.57
1171 2583 1.066573 AGCCTGTGATCTGTAGTGCAC 60.067 52.381 9.40 9.40 0.00 4.57
1172 2584 1.066573 GCCTGTGATCTGTAGTGCACT 60.067 52.381 25.12 25.12 32.69 4.40
1193 2605 1.372872 CTGTGCCATGTCGTCGTCA 60.373 57.895 0.00 0.00 0.00 4.35
1418 2830 2.280797 GGTGAGTGGCGCAGAACA 60.281 61.111 10.83 0.49 0.00 3.18
1445 2858 3.423154 CAGCCCTGCCGTTCGTTC 61.423 66.667 0.00 0.00 0.00 3.95
1458 2877 2.685100 GTTCGTTCCTTCATTCGTCCT 58.315 47.619 0.00 0.00 0.00 3.85
1468 2887 0.792640 CATTCGTCCTCACAGCACAC 59.207 55.000 0.00 0.00 0.00 3.82
1722 3171 2.496817 GACCGCCTGCTCCTACTG 59.503 66.667 0.00 0.00 0.00 2.74
1772 3253 4.373116 TCCGTCCGAAGCTGCCAC 62.373 66.667 0.00 0.00 0.00 5.01
1785 3266 4.389576 GCCACTGCCTTTCGCGTG 62.390 66.667 5.77 0.00 42.08 5.34
1804 3285 2.092211 GTGTCTTGTTCATTAGCGTCGG 59.908 50.000 0.00 0.00 0.00 4.79
1851 3332 0.317938 GTGAGCATCCCGTACGCTAG 60.318 60.000 10.49 0.37 35.75 3.42
1884 3365 0.651551 GTGTGGTGCGTGTCGTTAAA 59.348 50.000 0.00 0.00 0.00 1.52
1988 3476 6.888105 TGCATTGTTCTACCTGATCTAATGA 58.112 36.000 0.00 0.00 0.00 2.57
2024 3512 5.305128 TGCCTTTGATCCTGTTCTTCATTTT 59.695 36.000 0.00 0.00 0.00 1.82
2034 3784 5.572896 CCTGTTCTTCATTTTATTTCACGCC 59.427 40.000 0.00 0.00 0.00 5.68
2036 3786 5.242838 TGTTCTTCATTTTATTTCACGCCCT 59.757 36.000 0.00 0.00 0.00 5.19
2047 3797 2.685380 ACGCCCTCCCTCCTTCTG 60.685 66.667 0.00 0.00 0.00 3.02
2048 3798 4.168291 CGCCCTCCCTCCTTCTGC 62.168 72.222 0.00 0.00 0.00 4.26
2049 3799 3.011517 GCCCTCCCTCCTTCTGCA 61.012 66.667 0.00 0.00 0.00 4.41
2050 3800 2.606587 GCCCTCCCTCCTTCTGCAA 61.607 63.158 0.00 0.00 0.00 4.08
2051 3801 1.301293 CCCTCCCTCCTTCTGCAAC 59.699 63.158 0.00 0.00 0.00 4.17
2052 3802 1.078848 CCTCCCTCCTTCTGCAACG 60.079 63.158 0.00 0.00 0.00 4.10
2053 3803 1.674057 CTCCCTCCTTCTGCAACGT 59.326 57.895 0.00 0.00 0.00 3.99
2054 3804 0.035458 CTCCCTCCTTCTGCAACGTT 59.965 55.000 0.00 0.00 0.00 3.99
2055 3805 0.472471 TCCCTCCTTCTGCAACGTTT 59.528 50.000 0.00 0.00 0.00 3.60
2056 3806 1.133915 TCCCTCCTTCTGCAACGTTTT 60.134 47.619 0.00 0.00 0.00 2.43
2057 3807 1.681264 CCCTCCTTCTGCAACGTTTTT 59.319 47.619 0.00 0.00 0.00 1.94
2079 3829 2.341846 TGGGAGAGCAACGTTTTCTT 57.658 45.000 12.05 0.00 0.00 2.52
2083 3833 4.042398 GGGAGAGCAACGTTTTCTTTTTC 58.958 43.478 12.05 6.33 0.00 2.29
2128 4038 3.628008 TCCATGCTTGATTTGATCTGCT 58.372 40.909 0.22 0.00 33.20 4.24
2309 4233 1.305802 TGGTGCCCCAGATACGACT 60.306 57.895 0.00 0.00 35.17 4.18
2311 4235 0.462047 GGTGCCCCAGATACGACTTG 60.462 60.000 0.00 0.00 0.00 3.16
2362 4289 5.186603 GGCCAGATTCTTCATTTTTCCTTCT 59.813 40.000 0.00 0.00 0.00 2.85
2525 4454 0.814010 GGGTTCGATTGACCGGGATG 60.814 60.000 6.32 0.00 38.08 3.51
2631 4575 4.116328 CGTCTCCAGGCTTCGCGA 62.116 66.667 3.71 3.71 0.00 5.87
2657 4601 2.217038 TGGGAAAGGCTCTGCTCGT 61.217 57.895 0.00 0.00 0.00 4.18
2733 4677 1.202568 TCAGACTGTCAGTGGCAGTTG 60.203 52.381 29.92 25.76 45.99 3.16
2734 4678 1.123077 AGACTGTCAGTGGCAGTTGA 58.877 50.000 29.92 0.00 45.99 3.18
2736 4680 0.107456 ACTGTCAGTGGCAGTTGAGG 59.893 55.000 24.58 0.82 43.87 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 5.371176 ACATGAGATGTCCCTCTCTACTCTA 59.629 44.000 0.00 0.00 39.92 2.43
39 40 2.386661 AGTACCGCCAAAGACATGAG 57.613 50.000 0.00 0.00 0.00 2.90
50 51 3.861276 AAAAGGCATTAAAGTACCGCC 57.139 42.857 0.00 0.00 43.31 6.13
74 75 0.606401 GGTTGCAGCAGCTGGAGTTA 60.606 55.000 24.13 3.38 42.74 2.24
76 77 2.282040 GGTTGCAGCAGCTGGAGT 60.282 61.111 24.13 0.00 42.74 3.85
77 78 3.060615 GGGTTGCAGCAGCTGGAG 61.061 66.667 24.13 0.00 42.74 3.86
79 80 1.378911 TATGGGTTGCAGCAGCTGG 60.379 57.895 24.13 6.03 42.74 4.85
80 81 1.805254 GTATGGGTTGCAGCAGCTG 59.195 57.895 18.93 18.93 42.74 4.24
81 82 1.746615 CGTATGGGTTGCAGCAGCT 60.747 57.895 9.34 0.00 42.74 4.24
83 84 2.764314 GGCGTATGGGTTGCAGCAG 61.764 63.158 2.05 0.00 0.00 4.24
84 85 2.749839 GGCGTATGGGTTGCAGCA 60.750 61.111 2.05 0.00 0.00 4.41
85 86 2.063541 GATGGCGTATGGGTTGCAGC 62.064 60.000 0.00 0.00 0.00 5.25
87 88 1.817520 CGATGGCGTATGGGTTGCA 60.818 57.895 0.00 0.00 0.00 4.08
88 89 3.022287 CGATGGCGTATGGGTTGC 58.978 61.111 0.00 0.00 0.00 4.17
183 196 1.588861 GGAGCTAACGAGAATGAACGC 59.411 52.381 0.00 0.00 0.00 4.84
189 261 2.271800 CGCTTTGGAGCTAACGAGAAT 58.728 47.619 0.00 0.00 46.96 2.40
347 432 3.712016 TCAATCAATCCGGTCCTTGAA 57.288 42.857 16.68 3.21 35.20 2.69
372 457 9.740239 GACAATTAGTGAGTACGTATATCCAAA 57.260 33.333 0.00 0.00 0.00 3.28
374 459 7.308169 CCGACAATTAGTGAGTACGTATATCCA 60.308 40.741 0.00 0.00 0.00 3.41
376 461 7.800767 TCCGACAATTAGTGAGTACGTATATC 58.199 38.462 0.00 0.94 0.00 1.63
377 462 7.734924 TCCGACAATTAGTGAGTACGTATAT 57.265 36.000 0.00 0.00 0.00 0.86
378 463 7.442062 TCATCCGACAATTAGTGAGTACGTATA 59.558 37.037 0.00 0.00 0.00 1.47
379 464 6.261603 TCATCCGACAATTAGTGAGTACGTAT 59.738 38.462 0.00 0.00 0.00 3.06
380 465 5.585844 TCATCCGACAATTAGTGAGTACGTA 59.414 40.000 0.00 0.00 0.00 3.57
381 466 4.397103 TCATCCGACAATTAGTGAGTACGT 59.603 41.667 0.00 0.00 0.00 3.57
382 467 4.733887 GTCATCCGACAATTAGTGAGTACG 59.266 45.833 0.00 0.00 42.13 3.67
383 468 4.733887 CGTCATCCGACAATTAGTGAGTAC 59.266 45.833 0.00 0.00 42.74 2.73
535 661 8.871629 ACTCTCCACACGATTAATCTATCTAT 57.128 34.615 13.45 0.00 0.00 1.98
536 662 8.693120 AACTCTCCACACGATTAATCTATCTA 57.307 34.615 13.45 0.00 0.00 1.98
537 663 7.504238 AGAACTCTCCACACGATTAATCTATCT 59.496 37.037 13.45 0.00 0.00 1.98
538 664 7.593273 CAGAACTCTCCACACGATTAATCTATC 59.407 40.741 13.45 0.00 0.00 2.08
582 708 4.942483 CGTAGGTTGGTAGAGAGAAGAAGA 59.058 45.833 0.00 0.00 0.00 2.87
583 709 4.942483 TCGTAGGTTGGTAGAGAGAAGAAG 59.058 45.833 0.00 0.00 0.00 2.85
584 710 4.914983 TCGTAGGTTGGTAGAGAGAAGAA 58.085 43.478 0.00 0.00 0.00 2.52
599 725 1.107114 CTCACTGGATGCTCGTAGGT 58.893 55.000 0.00 0.00 0.00 3.08
647 777 0.535553 TTGGACGAAAAGGTTCCCGG 60.536 55.000 0.00 0.00 0.00 5.73
648 778 1.530323 ATTGGACGAAAAGGTTCCCG 58.470 50.000 0.00 0.00 0.00 5.14
660 790 1.815613 TGCCCACAATACAATTGGACG 59.184 47.619 10.83 0.00 31.39 4.79
666 796 3.495331 TGTGAAGTGCCCACAATACAAT 58.505 40.909 0.82 0.00 41.07 2.71
667 797 2.884012 CTGTGAAGTGCCCACAATACAA 59.116 45.455 0.82 0.00 43.07 2.41
668 798 2.105649 TCTGTGAAGTGCCCACAATACA 59.894 45.455 0.82 2.21 43.07 2.29
669 799 2.778299 TCTGTGAAGTGCCCACAATAC 58.222 47.619 0.82 0.00 43.07 1.89
670 800 3.500448 TTCTGTGAAGTGCCCACAATA 57.500 42.857 0.82 0.00 43.07 1.90
714 844 2.123342 GTCTGATATCTGCTCACGCAC 58.877 52.381 3.98 0.00 42.25 5.34
793 923 7.696453 GCTGCGTGACATTACAAAATTATTACT 59.304 33.333 0.00 0.00 0.00 2.24
823 2230 0.098728 GGCCGAATGGTCATTTCGTG 59.901 55.000 5.27 0.00 40.65 4.35
922 2330 3.377798 TGGTCACGTTTGTTTAGTTTCCC 59.622 43.478 0.00 0.00 0.00 3.97
923 2331 4.345288 GTGGTCACGTTTGTTTAGTTTCC 58.655 43.478 0.00 0.00 0.00 3.13
924 2332 4.345288 GGTGGTCACGTTTGTTTAGTTTC 58.655 43.478 0.00 0.00 0.00 2.78
969 2377 0.457681 GCTGTGAGAAGAGCGACCTC 60.458 60.000 0.00 0.00 38.42 3.85
1047 2459 1.392534 GTGAGAGGGAGGAAGGGGA 59.607 63.158 0.00 0.00 0.00 4.81
1049 2461 0.980231 CCTGTGAGAGGGAGGAAGGG 60.980 65.000 0.00 0.00 38.36 3.95
1052 2464 0.787084 AGTCCTGTGAGAGGGAGGAA 59.213 55.000 0.00 0.00 43.06 3.36
1053 2465 0.333312 GAGTCCTGTGAGAGGGAGGA 59.667 60.000 0.00 0.00 43.06 3.71
1415 2827 2.113986 GGCTGTGGAGGTGCTGTT 59.886 61.111 0.00 0.00 0.00 3.16
1418 2830 3.644606 CAGGGCTGTGGAGGTGCT 61.645 66.667 0.00 0.00 0.00 4.40
1445 2858 1.338105 TGCTGTGAGGACGAATGAAGG 60.338 52.381 0.00 0.00 0.00 3.46
1458 2877 2.092968 AGAACCAAGAAGTGTGCTGTGA 60.093 45.455 0.00 0.00 0.00 3.58
1468 2887 6.192360 CACAAAGAACGTAAGAACCAAGAAG 58.808 40.000 0.00 0.00 43.62 2.85
1722 3171 1.591619 GTTAATTGACGCCGGTAGCTC 59.408 52.381 1.90 0.00 40.39 4.09
1772 3253 1.205064 CAAGACACGCGAAAGGCAG 59.795 57.895 15.93 0.00 43.84 4.85
1785 3266 2.334838 ACCGACGCTAATGAACAAGAC 58.665 47.619 0.00 0.00 0.00 3.01
1804 3285 3.191371 ACAAAAATCTCCCAATCAGCGAC 59.809 43.478 0.00 0.00 0.00 5.19
1884 3365 2.414559 CGTACGACAACGGGTAGAACAT 60.415 50.000 10.44 0.00 44.46 2.71
2024 3512 0.326238 AGGAGGGAGGGCGTGAAATA 60.326 55.000 0.00 0.00 0.00 1.40
2034 3784 1.078848 CGTTGCAGAAGGAGGGAGG 60.079 63.158 0.00 0.00 0.00 4.30
2036 3786 0.472471 AAACGTTGCAGAAGGAGGGA 59.528 50.000 0.00 0.00 0.00 4.20
2056 3806 3.445805 AGAAAACGTTGCTCTCCCAAAAA 59.554 39.130 0.00 0.00 0.00 1.94
2057 3807 3.020984 AGAAAACGTTGCTCTCCCAAAA 58.979 40.909 0.00 0.00 0.00 2.44
2058 3808 2.650322 AGAAAACGTTGCTCTCCCAAA 58.350 42.857 0.00 0.00 0.00 3.28
2059 3809 2.341846 AGAAAACGTTGCTCTCCCAA 57.658 45.000 0.00 0.00 0.00 4.12
2060 3810 2.341846 AAGAAAACGTTGCTCTCCCA 57.658 45.000 0.00 0.00 0.00 4.37
2061 3811 3.710326 AAAAGAAAACGTTGCTCTCCC 57.290 42.857 0.00 0.00 0.00 4.30
2062 3812 4.668289 TGAAAAAGAAAACGTTGCTCTCC 58.332 39.130 0.00 0.00 0.00 3.71
2063 3813 6.626199 TTTGAAAAAGAAAACGTTGCTCTC 57.374 33.333 0.00 0.00 0.00 3.20
2064 3814 8.871686 ATATTTGAAAAAGAAAACGTTGCTCT 57.128 26.923 0.00 4.29 0.00 4.09
2095 3845 2.740981 CAAGCATGGAGTCACAGAAGAC 59.259 50.000 0.00 0.00 38.81 3.01
2098 4008 3.708403 ATCAAGCATGGAGTCACAGAA 57.292 42.857 0.00 0.00 0.00 3.02
2103 4013 4.638865 CAGATCAAATCAAGCATGGAGTCA 59.361 41.667 0.00 0.00 0.00 3.41
2105 4015 3.380637 GCAGATCAAATCAAGCATGGAGT 59.619 43.478 0.00 0.00 34.19 3.85
2362 4289 3.620488 CCGGGAAGATTCAAAATCCAGA 58.380 45.455 0.00 0.00 33.48 3.86
2643 4587 1.294780 CAGGACGAGCAGAGCCTTT 59.705 57.895 0.00 0.00 0.00 3.11
2646 4590 4.828925 GCCAGGACGAGCAGAGCC 62.829 72.222 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.