Multiple sequence alignment - TraesCS7D01G372300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G372300 chr7D 100.000 4320 0 0 1 4320 481698671 481694352 0.000000e+00 7978.0
1 TraesCS7D01G372300 chr7D 89.147 129 8 5 3604 3726 582161356 582161228 5.780000e-34 156.0
2 TraesCS7D01G372300 chr7B 91.553 2273 111 33 279 2511 507142017 507139786 0.000000e+00 3059.0
3 TraesCS7D01G372300 chr7B 97.007 969 25 1 2533 3501 507139596 507138632 0.000000e+00 1626.0
4 TraesCS7D01G372300 chr7B 97.095 241 5 2 49 287 507142448 507142208 5.200000e-109 405.0
5 TraesCS7D01G372300 chr7B 87.983 233 22 3 4093 4320 507138639 507138408 1.980000e-68 270.0
6 TraesCS7D01G372300 chr7B 78.683 319 26 22 3775 4056 688651995 688651682 1.600000e-39 174.0
7 TraesCS7D01G372300 chr7B 86.508 126 13 4 3604 3726 649987920 649987796 7.540000e-28 135.0
8 TraesCS7D01G372300 chr7B 88.732 71 8 0 2963 3033 745317527 745317457 2.140000e-13 87.9
9 TraesCS7D01G372300 chr7B 78.689 122 25 1 2912 3033 748014383 748014503 3.580000e-11 80.5
10 TraesCS7D01G372300 chr7B 100.000 42 0 0 1 42 507142477 507142436 1.290000e-10 78.7
11 TraesCS7D01G372300 chr7B 100.000 29 0 0 2 30 462782544 462782572 2.000000e-03 54.7
12 TraesCS7D01G372300 chr7A 88.141 2378 149 62 8 2318 548587003 548584692 0.000000e+00 2706.0
13 TraesCS7D01G372300 chr7A 91.061 895 67 12 2444 3326 548584491 548583598 0.000000e+00 1197.0
14 TraesCS7D01G372300 chr7A 85.202 223 17 8 3311 3530 548583573 548583364 9.410000e-52 215.0
15 TraesCS7D01G372300 chr7A 92.929 99 4 3 3631 3726 674088524 674088426 1.620000e-29 141.0
16 TraesCS7D01G372300 chr7A 91.919 99 4 4 3632 3726 195400443 195400345 7.540000e-28 135.0
17 TraesCS7D01G372300 chr7A 81.818 143 17 5 3604 3737 251474395 251474253 1.270000e-20 111.0
18 TraesCS7D01G372300 chr3A 89.108 762 81 2 2598 3358 671739581 671740341 0.000000e+00 946.0
19 TraesCS7D01G372300 chr3A 92.775 609 38 4 1095 1698 671732024 671732631 0.000000e+00 876.0
20 TraesCS7D01G372300 chr3A 81.728 301 35 15 3775 4057 454520290 454519992 2.600000e-57 233.0
21 TraesCS7D01G372300 chr3A 92.135 89 7 0 3976 4064 620571924 620571836 4.540000e-25 126.0
22 TraesCS7D01G372300 chr3A 84.921 126 16 3 3604 3726 730352905 730353030 1.630000e-24 124.0
23 TraesCS7D01G372300 chr3D 87.778 810 89 6 2598 3403 536331539 536332342 0.000000e+00 939.0
24 TraesCS7D01G372300 chr3D 82.178 303 30 17 3775 4057 337315384 337315086 5.580000e-59 239.0
25 TraesCS7D01G372300 chr3D 94.624 93 3 2 3636 3726 337315487 337315395 4.500000e-30 143.0
26 TraesCS7D01G372300 chr3D 82.734 139 15 3 3938 4067 482007593 482007455 9.820000e-22 115.0
27 TraesCS7D01G372300 chr3B 87.407 810 95 5 2598 3406 708517327 708516524 0.000000e+00 924.0
28 TraesCS7D01G372300 chr4D 87.728 603 64 5 1110 1711 40401136 40401729 0.000000e+00 695.0
29 TraesCS7D01G372300 chr4D 81.630 675 120 3 2636 3308 40402029 40402701 1.360000e-154 556.0
30 TraesCS7D01G372300 chr4B 87.710 594 66 2 1110 1703 58955483 58956069 0.000000e+00 686.0
31 TraesCS7D01G372300 chr4A 87.231 603 67 5 1110 1711 559487801 559487208 0.000000e+00 678.0
32 TraesCS7D01G372300 chr4A 81.037 675 124 4 2636 3308 559486874 559486202 6.360000e-148 534.0
33 TraesCS7D01G372300 chr4A 93.750 80 5 0 3976 4055 585519901 585519822 2.110000e-23 121.0
34 TraesCS7D01G372300 chr2B 87.245 588 67 6 1110 1696 107904391 107904971 0.000000e+00 664.0
35 TraesCS7D01G372300 chr2D 86.622 598 71 7 1110 1705 71621679 71622269 0.000000e+00 652.0
36 TraesCS7D01G372300 chr2D 82.857 210 25 7 3863 4064 50102131 50102337 1.230000e-40 178.0
37 TraesCS7D01G372300 chr2D 72.949 451 72 38 3638 4055 501702432 501701999 1.270000e-20 111.0
38 TraesCS7D01G372300 chr2A 86.288 598 73 7 1110 1705 70674303 70674893 3.640000e-180 641.0
39 TraesCS7D01G372300 chr2A 90.000 80 8 0 3976 4055 425905910 425905831 2.130000e-18 104.0
40 TraesCS7D01G372300 chr2A 100.000 28 0 0 1 28 203315191 203315164 8.000000e-03 52.8
41 TraesCS7D01G372300 chr5A 78.095 315 32 20 3772 4052 377003202 377003513 9.610000e-37 165.0
42 TraesCS7D01G372300 chr5B 87.719 114 12 2 3614 3726 415999085 415998973 9.750000e-27 132.0
43 TraesCS7D01G372300 chr6D 83.594 128 18 3 3615 3739 472672655 472672782 2.730000e-22 117.0
44 TraesCS7D01G372300 chr5D 84.677 124 12 4 3938 4055 352940597 352940475 2.730000e-22 117.0
45 TraesCS7D01G372300 chr6A 92.500 80 5 1 3976 4055 606623615 606623537 3.530000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G372300 chr7D 481694352 481698671 4319 True 7978.000000 7978 100.000000 1 4320 1 chr7D.!!$R1 4319
1 TraesCS7D01G372300 chr7B 507138408 507142477 4069 True 1087.740000 3059 94.727600 1 4320 5 chr7B.!!$R4 4319
2 TraesCS7D01G372300 chr7A 548583364 548587003 3639 True 1372.666667 2706 88.134667 8 3530 3 chr7A.!!$R4 3522
3 TraesCS7D01G372300 chr3A 671739581 671740341 760 False 946.000000 946 89.108000 2598 3358 1 chr3A.!!$F2 760
4 TraesCS7D01G372300 chr3A 671732024 671732631 607 False 876.000000 876 92.775000 1095 1698 1 chr3A.!!$F1 603
5 TraesCS7D01G372300 chr3D 536331539 536332342 803 False 939.000000 939 87.778000 2598 3403 1 chr3D.!!$F1 805
6 TraesCS7D01G372300 chr3B 708516524 708517327 803 True 924.000000 924 87.407000 2598 3406 1 chr3B.!!$R1 808
7 TraesCS7D01G372300 chr4D 40401136 40402701 1565 False 625.500000 695 84.679000 1110 3308 2 chr4D.!!$F1 2198
8 TraesCS7D01G372300 chr4B 58955483 58956069 586 False 686.000000 686 87.710000 1110 1703 1 chr4B.!!$F1 593
9 TraesCS7D01G372300 chr4A 559486202 559487801 1599 True 606.000000 678 84.134000 1110 3308 2 chr4A.!!$R2 2198
10 TraesCS7D01G372300 chr2B 107904391 107904971 580 False 664.000000 664 87.245000 1110 1696 1 chr2B.!!$F1 586
11 TraesCS7D01G372300 chr2D 71621679 71622269 590 False 652.000000 652 86.622000 1110 1705 1 chr2D.!!$F2 595
12 TraesCS7D01G372300 chr2A 70674303 70674893 590 False 641.000000 641 86.288000 1110 1705 1 chr2A.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 1159 0.034477 CCACTGGTGATTGTACCCCC 60.034 60.0 1.93 0.00 40.09 5.40 F
1029 1292 0.895559 CAACCTTGTCCTTGGGCCTC 60.896 60.0 4.53 0.00 0.00 4.70 F
1973 2302 0.179936 AGAAGGCATGGCTGAGCTAC 59.820 55.0 24.08 10.07 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2302 0.957395 AGGTCGGCATGCAAGAACAG 60.957 55.000 25.52 7.53 0.0 3.16 R
2345 2751 1.202651 CGGGTTTCCAAGTCACAGTCT 60.203 52.381 0.00 0.00 0.0 3.24 R
3894 4591 0.031585 TTTGTGCTCGCGTAGACAGT 59.968 50.000 5.77 0.00 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 60 7.558161 AGTCAATGATGATGCTTTATTCGAA 57.442 32.000 0.00 0.00 38.01 3.71
41 61 8.162878 AGTCAATGATGATGCTTTATTCGAAT 57.837 30.769 16.15 16.15 38.01 3.34
42 62 8.074370 AGTCAATGATGATGCTTTATTCGAATG 58.926 33.333 20.87 5.26 38.01 2.67
43 63 7.859377 GTCAATGATGATGCTTTATTCGAATGT 59.141 33.333 20.87 0.00 38.01 2.71
44 64 7.858879 TCAATGATGATGCTTTATTCGAATGTG 59.141 33.333 20.87 10.96 0.00 3.21
45 65 6.063640 TGATGATGCTTTATTCGAATGTGG 57.936 37.500 20.87 10.59 0.00 4.17
46 66 5.821995 TGATGATGCTTTATTCGAATGTGGA 59.178 36.000 20.87 11.41 0.00 4.02
47 67 5.484173 TGATGCTTTATTCGAATGTGGAC 57.516 39.130 20.87 6.94 0.00 4.02
48 68 4.033932 TGATGCTTTATTCGAATGTGGACG 59.966 41.667 20.87 4.47 0.00 4.79
49 69 2.095213 TGCTTTATTCGAATGTGGACGC 59.905 45.455 20.87 13.48 0.00 5.19
50 70 2.351726 GCTTTATTCGAATGTGGACGCT 59.648 45.455 20.87 0.00 0.00 5.07
51 71 3.181510 GCTTTATTCGAATGTGGACGCTT 60.182 43.478 20.87 0.00 0.00 4.68
52 72 4.671766 GCTTTATTCGAATGTGGACGCTTT 60.672 41.667 20.87 0.00 0.00 3.51
53 73 5.446741 GCTTTATTCGAATGTGGACGCTTTA 60.447 40.000 20.87 0.00 0.00 1.85
54 74 6.671614 TTTATTCGAATGTGGACGCTTTAT 57.328 33.333 20.87 0.00 0.00 1.40
55 75 6.671614 TTATTCGAATGTGGACGCTTTATT 57.328 33.333 20.87 0.00 0.00 1.40
56 76 4.593597 TTCGAATGTGGACGCTTTATTC 57.406 40.909 0.00 0.00 0.00 1.75
57 77 2.601314 TCGAATGTGGACGCTTTATTCG 59.399 45.455 10.40 10.40 46.70 3.34
194 216 0.533491 TCATTAGTGTTAGCGCGGGT 59.467 50.000 8.83 0.00 0.00 5.28
293 515 1.560004 CGCAGAAAAGAGCAGACGCA 61.560 55.000 0.00 0.00 42.27 5.24
326 548 3.945921 AGCTAGTCATACGTTGAGCAGTA 59.054 43.478 0.00 0.00 34.17 2.74
327 549 4.036352 GCTAGTCATACGTTGAGCAGTAC 58.964 47.826 0.00 0.00 34.17 2.73
328 550 4.201930 GCTAGTCATACGTTGAGCAGTACT 60.202 45.833 0.00 0.00 34.17 2.73
329 551 4.358494 AGTCATACGTTGAGCAGTACTC 57.642 45.455 0.00 0.00 46.45 2.59
330 552 3.128938 AGTCATACGTTGAGCAGTACTCC 59.871 47.826 0.00 0.00 45.61 3.85
331 553 3.128938 GTCATACGTTGAGCAGTACTCCT 59.871 47.826 0.00 0.00 45.61 3.69
399 626 1.576368 TTGGTGTTGGTGGACAGGGT 61.576 55.000 0.00 0.00 0.00 4.34
416 643 1.474143 GGGTTGCAGGATACAGAGAGC 60.474 57.143 0.00 0.00 41.41 4.09
458 685 1.956170 GTCCGTGTGACACAGCCAG 60.956 63.158 16.74 1.09 43.85 4.85
459 686 2.108976 CCGTGTGACACAGCCAGT 59.891 61.111 16.74 0.00 33.40 4.00
460 687 1.956170 CCGTGTGACACAGCCAGTC 60.956 63.158 16.74 0.00 33.40 3.51
461 688 1.227234 CGTGTGACACAGCCAGTCA 60.227 57.895 16.74 0.00 43.23 3.41
465 692 2.515288 TGACACAGCCAGTCACAGA 58.485 52.632 0.00 0.00 40.80 3.41
466 693 1.051008 TGACACAGCCAGTCACAGAT 58.949 50.000 0.00 0.00 40.80 2.90
468 695 2.632512 TGACACAGCCAGTCACAGATAA 59.367 45.455 0.00 0.00 40.80 1.75
469 696 3.261643 TGACACAGCCAGTCACAGATAAT 59.738 43.478 0.00 0.00 40.80 1.28
470 697 4.256920 GACACAGCCAGTCACAGATAATT 58.743 43.478 0.00 0.00 36.06 1.40
548 775 3.806949 AAGCTGAATGGACCAAAGGTA 57.193 42.857 0.00 0.00 35.25 3.08
549 776 3.806949 AGCTGAATGGACCAAAGGTAA 57.193 42.857 0.00 0.00 35.25 2.85
574 801 5.708877 AAACAGTCTCTCCTGTAGTGTAC 57.291 43.478 0.00 0.00 44.74 2.90
598 828 3.882288 TGCTTTTGATGTAGCAACAGTCA 59.118 39.130 0.00 0.00 43.88 3.41
609 839 1.143305 CAACAGTCAGCCAAGTCTCG 58.857 55.000 0.00 0.00 0.00 4.04
612 842 0.730834 CAGTCAGCCAAGTCTCGACG 60.731 60.000 0.00 0.00 36.20 5.12
616 846 2.733593 GCCAAGTCTCGACGCGTT 60.734 61.111 15.53 0.00 36.20 4.84
618 848 1.660575 CCAAGTCTCGACGCGTTGT 60.661 57.895 25.12 3.82 36.20 3.32
620 850 1.371389 AAGTCTCGACGCGTTGTCC 60.371 57.895 25.12 14.09 45.23 4.02
659 890 4.743018 GTGGCCACCAGCATTACT 57.257 55.556 26.31 0.00 46.50 2.24
757 988 3.631250 AGTTCACACACAAAGGTTGGAT 58.369 40.909 0.00 0.00 34.12 3.41
774 1006 2.225242 TGGATGTAATGCACAAAGGGGT 60.225 45.455 0.00 0.00 40.85 4.95
822 1054 3.231734 TTGTGGCCAAGATGAGTCG 57.768 52.632 7.24 0.00 0.00 4.18
916 1156 1.024579 CGGCCACTGGTGATTGTACC 61.025 60.000 2.24 0.00 41.24 3.34
917 1157 0.679960 GGCCACTGGTGATTGTACCC 60.680 60.000 0.00 0.00 40.09 3.69
919 1159 0.034477 CCACTGGTGATTGTACCCCC 60.034 60.000 1.93 0.00 40.09 5.40
982 1245 1.548081 CATGCATTCCAGACCCACAA 58.452 50.000 0.00 0.00 0.00 3.33
1029 1292 0.895559 CAACCTTGTCCTTGGGCCTC 60.896 60.000 4.53 0.00 0.00 4.70
1837 2159 4.253685 ACCGACAATAATCACTTCACTGG 58.746 43.478 0.00 0.00 0.00 4.00
1920 2249 3.420893 TGGATTCAGTTAGTTGGCTTGG 58.579 45.455 0.00 0.00 0.00 3.61
1973 2302 0.179936 AGAAGGCATGGCTGAGCTAC 59.820 55.000 24.08 10.07 0.00 3.58
2185 2516 3.494048 GCACACTGATGGATAGAGGGAAG 60.494 52.174 0.00 0.00 0.00 3.46
2215 2553 7.648112 GGGAATGAAAGAACAAAGTTTCAGTAC 59.352 37.037 4.08 2.05 43.90 2.73
2217 2555 6.730960 TGAAAGAACAAAGTTTCAGTACGT 57.269 33.333 0.00 0.00 37.67 3.57
2218 2556 7.830940 TGAAAGAACAAAGTTTCAGTACGTA 57.169 32.000 0.00 0.00 37.67 3.57
2219 2557 8.254178 TGAAAGAACAAAGTTTCAGTACGTAA 57.746 30.769 0.00 0.00 37.67 3.18
2220 2558 8.385111 TGAAAGAACAAAGTTTCAGTACGTAAG 58.615 33.333 0.00 0.00 37.67 2.34
2221 2559 8.483307 AAAGAACAAAGTTTCAGTACGTAAGA 57.517 30.769 0.00 0.00 43.62 2.10
2222 2560 8.483307 AAGAACAAAGTTTCAGTACGTAAGAA 57.517 30.769 0.00 1.98 43.62 2.52
2271 2610 9.691362 AATAACTGCATGTCGAGTTAAATTTTT 57.309 25.926 14.25 5.46 38.00 1.94
2402 2810 4.000988 ACAATCCAGTTTCGCGAGTTATT 58.999 39.130 9.59 2.33 0.00 1.40
2406 2887 4.778904 TCCAGTTTCGCGAGTTATTTTTG 58.221 39.130 9.59 1.01 0.00 2.44
2410 2891 2.241259 TCGCGAGTTATTTTTGCAGC 57.759 45.000 3.71 0.00 0.00 5.25
2426 2907 9.632807 ATTTTTGCAGCGTTTATTTTAGATGTA 57.367 25.926 0.00 0.00 0.00 2.29
2429 2910 7.234187 TGCAGCGTTTATTTTAGATGTAGAG 57.766 36.000 0.00 0.00 0.00 2.43
2430 2911 6.816640 TGCAGCGTTTATTTTAGATGTAGAGT 59.183 34.615 0.00 0.00 0.00 3.24
2432 2913 8.175716 GCAGCGTTTATTTTAGATGTAGAGTTT 58.824 33.333 0.00 0.00 0.00 2.66
2492 2973 9.396022 AGTTGAAAATTCATATATTCGTCCAGT 57.604 29.630 0.00 0.00 37.00 4.00
2547 3196 9.209175 GTCAGAACATTATATATGGAACCTGTC 57.791 37.037 0.00 0.00 0.00 3.51
2568 3217 7.915397 CCTGTCAATCTTATTGAAAAATACGGG 59.085 37.037 4.00 3.01 0.00 5.28
2629 3280 5.207110 TGCTATAGAATGCTTCAGGAGTC 57.793 43.478 3.21 0.00 0.00 3.36
2938 3589 2.507102 CTGATGGCGTTCGAGCGT 60.507 61.111 22.62 3.02 38.18 5.07
3247 3898 1.197721 GTGTTCATCTCCCTTGTTGCG 59.802 52.381 0.00 0.00 0.00 4.85
3250 3901 1.675310 CATCTCCCTTGTTGCGGCA 60.675 57.895 0.00 0.00 0.00 5.69
3408 4102 2.676342 GTTCGTGGAGTCTCTCTCTCTC 59.324 54.545 0.00 0.00 42.40 3.20
3409 4103 2.184533 TCGTGGAGTCTCTCTCTCTCT 58.815 52.381 0.00 0.00 42.40 3.10
3410 4104 2.167693 TCGTGGAGTCTCTCTCTCTCTC 59.832 54.545 0.00 0.00 42.40 3.20
3411 4105 2.168521 CGTGGAGTCTCTCTCTCTCTCT 59.831 54.545 0.00 0.00 42.40 3.10
3419 4113 7.364762 GGAGTCTCTCTCTCTCTCTTTCTCTTA 60.365 44.444 0.00 0.00 42.40 2.10
3502 4197 7.775053 TTTGTCTTCCATATAAAAAGGCAGT 57.225 32.000 0.00 0.00 36.14 4.40
3506 4203 5.891551 TCTTCCATATAAAAAGGCAGTTCCC 59.108 40.000 0.00 0.00 34.51 3.97
3510 4207 5.278463 CCATATAAAAAGGCAGTTCCCATCG 60.278 44.000 0.00 0.00 34.51 3.84
3518 4215 2.892425 GTTCCCATCGGCTGCTCG 60.892 66.667 0.00 1.60 0.00 5.03
3530 4227 3.615496 TCGGCTGCTCGTAAAGAAAATAC 59.385 43.478 0.00 0.00 0.00 1.89
3531 4228 3.369756 CGGCTGCTCGTAAAGAAAATACA 59.630 43.478 0.00 0.00 0.00 2.29
3532 4229 4.648970 GGCTGCTCGTAAAGAAAATACAC 58.351 43.478 0.00 0.00 0.00 2.90
3533 4230 4.392138 GGCTGCTCGTAAAGAAAATACACT 59.608 41.667 0.00 0.00 0.00 3.55
3534 4231 5.106673 GGCTGCTCGTAAAGAAAATACACTT 60.107 40.000 0.00 0.00 0.00 3.16
3535 4232 5.790495 GCTGCTCGTAAAGAAAATACACTTG 59.210 40.000 0.00 0.00 0.00 3.16
3536 4233 5.685841 TGCTCGTAAAGAAAATACACTTGC 58.314 37.500 0.00 0.00 0.00 4.01
3537 4234 5.086727 GCTCGTAAAGAAAATACACTTGCC 58.913 41.667 0.00 0.00 0.00 4.52
3538 4235 5.334569 GCTCGTAAAGAAAATACACTTGCCA 60.335 40.000 0.00 0.00 0.00 4.92
3539 4236 5.992729 TCGTAAAGAAAATACACTTGCCAC 58.007 37.500 0.00 0.00 0.00 5.01
3540 4237 4.843984 CGTAAAGAAAATACACTTGCCACG 59.156 41.667 0.00 0.00 0.00 4.94
3541 4238 5.333492 CGTAAAGAAAATACACTTGCCACGA 60.333 40.000 0.00 0.00 33.12 4.35
3542 4239 5.705609 AAAGAAAATACACTTGCCACGAT 57.294 34.783 0.00 0.00 0.00 3.73
3543 4240 6.811253 AAAGAAAATACACTTGCCACGATA 57.189 33.333 0.00 0.00 0.00 2.92
3544 4241 6.811253 AAGAAAATACACTTGCCACGATAA 57.189 33.333 0.00 0.00 0.00 1.75
3545 4242 6.178239 AGAAAATACACTTGCCACGATAAC 57.822 37.500 0.00 0.00 0.00 1.89
3546 4243 4.957759 AAATACACTTGCCACGATAACC 57.042 40.909 0.00 0.00 0.00 2.85
3547 4244 3.620427 ATACACTTGCCACGATAACCA 57.380 42.857 0.00 0.00 0.00 3.67
3548 4245 2.264005 ACACTTGCCACGATAACCAA 57.736 45.000 0.00 0.00 0.00 3.67
3549 4246 2.151202 ACACTTGCCACGATAACCAAG 58.849 47.619 0.00 0.00 40.26 3.61
3550 4247 1.468520 CACTTGCCACGATAACCAAGG 59.531 52.381 0.00 0.00 39.09 3.61
3551 4248 1.094785 CTTGCCACGATAACCAAGGG 58.905 55.000 0.00 0.00 32.99 3.95
3552 4249 0.963355 TTGCCACGATAACCAAGGGC 60.963 55.000 0.00 0.00 41.70 5.19
3553 4250 1.377987 GCCACGATAACCAAGGGCA 60.378 57.895 0.00 0.00 41.02 5.36
3554 4251 1.654023 GCCACGATAACCAAGGGCAC 61.654 60.000 0.00 0.00 41.02 5.01
3555 4252 0.035439 CCACGATAACCAAGGGCACT 60.035 55.000 0.00 0.00 0.00 4.40
3556 4253 1.613255 CCACGATAACCAAGGGCACTT 60.613 52.381 0.00 0.00 37.43 3.16
3557 4254 2.355310 CCACGATAACCAAGGGCACTTA 60.355 50.000 0.00 0.00 34.49 2.24
3558 4255 2.936498 CACGATAACCAAGGGCACTTAG 59.064 50.000 0.00 0.00 34.49 2.18
3559 4256 2.835764 ACGATAACCAAGGGCACTTAGA 59.164 45.455 0.00 0.00 34.49 2.10
3560 4257 3.195661 CGATAACCAAGGGCACTTAGAC 58.804 50.000 0.00 0.00 34.49 2.59
3561 4258 3.118738 CGATAACCAAGGGCACTTAGACT 60.119 47.826 0.00 0.00 34.49 3.24
3562 4259 2.861147 AACCAAGGGCACTTAGACTC 57.139 50.000 0.00 0.00 34.49 3.36
3563 4260 0.984995 ACCAAGGGCACTTAGACTCC 59.015 55.000 0.00 0.00 34.49 3.85
3564 4261 0.984230 CCAAGGGCACTTAGACTCCA 59.016 55.000 0.00 0.00 34.49 3.86
3565 4262 1.351017 CCAAGGGCACTTAGACTCCAA 59.649 52.381 0.00 0.00 34.49 3.53
3566 4263 2.025887 CCAAGGGCACTTAGACTCCAAT 60.026 50.000 0.00 0.00 34.49 3.16
3567 4264 3.199946 CCAAGGGCACTTAGACTCCAATA 59.800 47.826 0.00 0.00 34.49 1.90
3568 4265 4.141390 CCAAGGGCACTTAGACTCCAATAT 60.141 45.833 0.00 0.00 34.49 1.28
3569 4266 5.440610 CAAGGGCACTTAGACTCCAATATT 58.559 41.667 0.00 0.00 34.49 1.28
3570 4267 5.297569 AGGGCACTTAGACTCCAATATTC 57.702 43.478 0.00 0.00 0.00 1.75
3571 4268 4.103311 AGGGCACTTAGACTCCAATATTCC 59.897 45.833 0.00 0.00 0.00 3.01
3572 4269 4.103311 GGGCACTTAGACTCCAATATTCCT 59.897 45.833 0.00 0.00 0.00 3.36
3573 4270 5.301555 GGCACTTAGACTCCAATATTCCTC 58.698 45.833 0.00 0.00 0.00 3.71
3574 4271 5.071115 GGCACTTAGACTCCAATATTCCTCT 59.929 44.000 0.00 0.00 0.00 3.69
3575 4272 6.267928 GGCACTTAGACTCCAATATTCCTCTA 59.732 42.308 0.00 0.00 0.00 2.43
3576 4273 7.202011 GGCACTTAGACTCCAATATTCCTCTAA 60.202 40.741 0.00 0.00 0.00 2.10
3577 4274 8.204836 GCACTTAGACTCCAATATTCCTCTAAA 58.795 37.037 0.00 0.00 0.00 1.85
3578 4275 9.757227 CACTTAGACTCCAATATTCCTCTAAAG 57.243 37.037 0.00 0.00 0.00 1.85
3579 4276 9.495382 ACTTAGACTCCAATATTCCTCTAAAGT 57.505 33.333 0.00 0.00 0.00 2.66
3583 4280 9.890915 AGACTCCAATATTCCTCTAAAGTAGAT 57.109 33.333 0.00 0.00 33.66 1.98
3584 4281 9.921637 GACTCCAATATTCCTCTAAAGTAGATG 57.078 37.037 0.00 0.00 33.66 2.90
3585 4282 9.661954 ACTCCAATATTCCTCTAAAGTAGATGA 57.338 33.333 0.00 0.00 33.66 2.92
3588 4285 9.160496 CCAATATTCCTCTAAAGTAGATGATGC 57.840 37.037 0.00 0.00 33.66 3.91
3589 4286 9.160496 CAATATTCCTCTAAAGTAGATGATGCC 57.840 37.037 0.00 0.00 33.66 4.40
3590 4287 5.552870 TTCCTCTAAAGTAGATGATGCCC 57.447 43.478 0.00 0.00 33.66 5.36
3591 4288 3.904339 TCCTCTAAAGTAGATGATGCCCC 59.096 47.826 0.00 0.00 33.66 5.80
3592 4289 3.648067 CCTCTAAAGTAGATGATGCCCCA 59.352 47.826 0.00 0.00 33.66 4.96
3593 4290 4.503991 CCTCTAAAGTAGATGATGCCCCAC 60.504 50.000 0.00 0.00 33.66 4.61
3594 4291 2.332063 AAAGTAGATGATGCCCCACG 57.668 50.000 0.00 0.00 0.00 4.94
3595 4292 0.179045 AAGTAGATGATGCCCCACGC 60.179 55.000 0.00 0.00 38.31 5.34
3596 4293 1.956170 GTAGATGATGCCCCACGCG 60.956 63.158 3.53 3.53 42.08 6.01
3597 4294 2.431454 TAGATGATGCCCCACGCGT 61.431 57.895 5.58 5.58 42.08 6.01
3598 4295 1.966901 TAGATGATGCCCCACGCGTT 61.967 55.000 10.22 0.00 42.08 4.84
3599 4296 3.112126 GATGATGCCCCACGCGTTG 62.112 63.158 10.22 6.05 42.08 4.10
3602 4299 4.402528 ATGCCCCACGCGTTGCTA 62.403 61.111 10.22 4.50 42.08 3.49
3603 4300 3.697439 ATGCCCCACGCGTTGCTAT 62.697 57.895 10.22 6.64 42.08 2.97
3604 4301 2.202960 GCCCCACGCGTTGCTATA 60.203 61.111 10.22 0.00 0.00 1.31
3605 4302 1.816259 GCCCCACGCGTTGCTATAA 60.816 57.895 10.22 0.00 0.00 0.98
3606 4303 1.370587 GCCCCACGCGTTGCTATAAA 61.371 55.000 10.22 0.00 0.00 1.40
3607 4304 1.088306 CCCCACGCGTTGCTATAAAA 58.912 50.000 10.22 0.00 0.00 1.52
3608 4305 1.202098 CCCCACGCGTTGCTATAAAAC 60.202 52.381 10.22 0.00 0.00 2.43
3609 4306 1.735571 CCCACGCGTTGCTATAAAACT 59.264 47.619 10.22 0.00 0.00 2.66
3610 4307 2.160813 CCCACGCGTTGCTATAAAACTT 59.839 45.455 10.22 0.00 0.00 2.66
3611 4308 3.160545 CCACGCGTTGCTATAAAACTTG 58.839 45.455 10.22 0.00 0.00 3.16
3612 4309 2.588106 CACGCGTTGCTATAAAACTTGC 59.412 45.455 10.22 0.00 0.00 4.01
3613 4310 1.831812 CGCGTTGCTATAAAACTTGCG 59.168 47.619 0.00 0.00 33.39 4.85
3614 4311 1.577578 GCGTTGCTATAAAACTTGCGC 59.422 47.619 0.00 0.00 35.77 6.09
3615 4312 2.845486 CGTTGCTATAAAACTTGCGCA 58.155 42.857 5.66 5.66 0.00 6.09
3616 4313 3.425404 CGTTGCTATAAAACTTGCGCAT 58.575 40.909 12.75 0.00 0.00 4.73
3617 4314 4.583426 CGTTGCTATAAAACTTGCGCATA 58.417 39.130 12.75 0.00 0.00 3.14
3618 4315 4.666176 CGTTGCTATAAAACTTGCGCATAG 59.334 41.667 12.75 14.33 0.00 2.23
3619 4316 5.501736 CGTTGCTATAAAACTTGCGCATAGA 60.502 40.000 12.75 0.00 0.00 1.98
3620 4317 6.430451 GTTGCTATAAAACTTGCGCATAGAT 58.570 36.000 12.75 3.60 0.00 1.98
3621 4318 7.568679 CGTTGCTATAAAACTTGCGCATAGATA 60.569 37.037 12.75 1.58 0.00 1.98
3622 4319 7.351414 TGCTATAAAACTTGCGCATAGATAG 57.649 36.000 12.75 7.89 0.00 2.08
3623 4320 7.151976 TGCTATAAAACTTGCGCATAGATAGA 58.848 34.615 12.75 0.00 0.00 1.98
3624 4321 7.819415 TGCTATAAAACTTGCGCATAGATAGAT 59.181 33.333 12.75 0.00 0.00 1.98
3625 4322 8.113062 GCTATAAAACTTGCGCATAGATAGATG 58.887 37.037 12.75 0.00 0.00 2.90
3626 4323 7.969536 ATAAAACTTGCGCATAGATAGATGT 57.030 32.000 12.75 0.00 0.00 3.06
3627 4324 6.683974 AAAACTTGCGCATAGATAGATGTT 57.316 33.333 12.75 0.00 0.00 2.71
3628 4325 6.683974 AAACTTGCGCATAGATAGATGTTT 57.316 33.333 12.75 4.62 0.00 2.83
3629 4326 5.663795 ACTTGCGCATAGATAGATGTTTG 57.336 39.130 12.75 0.00 0.00 2.93
3630 4327 4.512944 ACTTGCGCATAGATAGATGTTTGG 59.487 41.667 12.75 0.00 0.00 3.28
3631 4328 4.335400 TGCGCATAGATAGATGTTTGGA 57.665 40.909 5.66 0.00 0.00 3.53
3632 4329 4.702831 TGCGCATAGATAGATGTTTGGAA 58.297 39.130 5.66 0.00 0.00 3.53
3633 4330 5.122519 TGCGCATAGATAGATGTTTGGAAA 58.877 37.500 5.66 0.00 0.00 3.13
3634 4331 5.588246 TGCGCATAGATAGATGTTTGGAAAA 59.412 36.000 5.66 0.00 0.00 2.29
3635 4332 6.262944 TGCGCATAGATAGATGTTTGGAAAAT 59.737 34.615 5.66 0.00 0.00 1.82
3636 4333 7.443879 TGCGCATAGATAGATGTTTGGAAAATA 59.556 33.333 5.66 0.00 0.00 1.40
3637 4334 8.289618 GCGCATAGATAGATGTTTGGAAAATAA 58.710 33.333 0.30 0.00 0.00 1.40
3647 4344 9.995003 AGATGTTTGGAAAATAAAACTATTGCA 57.005 25.926 0.00 0.00 37.22 4.08
3668 4365 9.667989 ATTGCAAAAACAAATTTAAGAATGCTC 57.332 25.926 1.71 0.00 32.27 4.26
3669 4366 8.436046 TGCAAAAACAAATTTAAGAATGCTCT 57.564 26.923 14.53 0.00 0.00 4.09
3670 4367 8.891720 TGCAAAAACAAATTTAAGAATGCTCTT 58.108 25.926 14.53 0.00 44.37 2.85
3671 4368 9.161684 GCAAAAACAAATTTAAGAATGCTCTTG 57.838 29.630 9.08 0.00 42.11 3.02
3724 4421 9.926158 ATGAAGCATGTGATAAAATGTTGTAAA 57.074 25.926 0.00 0.00 0.00 2.01
3725 4422 9.755804 TGAAGCATGTGATAAAATGTTGTAAAA 57.244 25.926 0.00 0.00 0.00 1.52
3797 4494 4.903638 TTAGATTGAAGTCAAACGAGCG 57.096 40.909 0.00 0.00 39.55 5.03
3798 4495 2.755650 AGATTGAAGTCAAACGAGCGT 58.244 42.857 0.00 0.00 39.55 5.07
3799 4496 2.731976 AGATTGAAGTCAAACGAGCGTC 59.268 45.455 0.00 0.00 39.55 5.19
3800 4497 1.929230 TTGAAGTCAAACGAGCGTCA 58.071 45.000 0.00 0.00 32.11 4.35
3801 4498 2.148916 TGAAGTCAAACGAGCGTCAT 57.851 45.000 0.00 0.00 0.00 3.06
3802 4499 2.479837 TGAAGTCAAACGAGCGTCATT 58.520 42.857 0.00 0.00 0.00 2.57
3803 4500 2.475111 TGAAGTCAAACGAGCGTCATTC 59.525 45.455 0.00 0.00 0.00 2.67
3804 4501 2.440539 AGTCAAACGAGCGTCATTCT 57.559 45.000 0.00 0.00 0.00 2.40
3805 4502 2.755650 AGTCAAACGAGCGTCATTCTT 58.244 42.857 0.00 0.00 0.00 2.52
3806 4503 3.909430 AGTCAAACGAGCGTCATTCTTA 58.091 40.909 0.00 0.00 0.00 2.10
3807 4504 4.304110 AGTCAAACGAGCGTCATTCTTAA 58.696 39.130 0.00 0.00 0.00 1.85
3808 4505 4.150098 AGTCAAACGAGCGTCATTCTTAAC 59.850 41.667 0.00 0.00 0.00 2.01
3809 4506 4.052608 TCAAACGAGCGTCATTCTTAACA 58.947 39.130 0.00 0.00 0.00 2.41
3810 4507 4.508492 TCAAACGAGCGTCATTCTTAACAA 59.492 37.500 0.00 0.00 0.00 2.83
3811 4508 5.006844 TCAAACGAGCGTCATTCTTAACAAA 59.993 36.000 0.00 0.00 0.00 2.83
3812 4509 5.412526 AACGAGCGTCATTCTTAACAAAA 57.587 34.783 0.00 0.00 0.00 2.44
3813 4510 5.412526 ACGAGCGTCATTCTTAACAAAAA 57.587 34.783 0.00 0.00 0.00 1.94
3814 4511 5.997385 ACGAGCGTCATTCTTAACAAAAAT 58.003 33.333 0.00 0.00 0.00 1.82
3815 4512 5.851177 ACGAGCGTCATTCTTAACAAAAATG 59.149 36.000 0.00 0.00 0.00 2.32
3816 4513 5.851177 CGAGCGTCATTCTTAACAAAAATGT 59.149 36.000 0.00 0.00 33.22 2.71
3817 4514 6.183359 CGAGCGTCATTCTTAACAAAAATGTG 60.183 38.462 0.00 0.00 33.22 3.21
3818 4515 6.503524 AGCGTCATTCTTAACAAAAATGTGT 58.496 32.000 0.00 0.00 33.22 3.72
3819 4516 7.644490 AGCGTCATTCTTAACAAAAATGTGTA 58.356 30.769 0.00 0.00 33.22 2.90
3820 4517 8.132362 AGCGTCATTCTTAACAAAAATGTGTAA 58.868 29.630 0.00 0.00 33.22 2.41
3821 4518 8.205297 GCGTCATTCTTAACAAAAATGTGTAAC 58.795 33.333 0.00 0.00 33.22 2.50
3839 4536 8.671384 TGTGTAACATAACCTATATTTGCTCC 57.329 34.615 0.00 0.00 45.67 4.70
3840 4537 8.268605 TGTGTAACATAACCTATATTTGCTCCA 58.731 33.333 0.00 0.00 45.67 3.86
3841 4538 9.116067 GTGTAACATAACCTATATTTGCTCCAA 57.884 33.333 0.00 0.00 36.32 3.53
3842 4539 9.688091 TGTAACATAACCTATATTTGCTCCAAA 57.312 29.630 0.00 0.00 37.75 3.28
3845 4542 7.661040 ACATAACCTATATTTGCTCCAAATGC 58.339 34.615 12.14 0.00 42.91 3.56
3846 4543 7.287466 ACATAACCTATATTTGCTCCAAATGCA 59.713 33.333 12.14 0.00 42.91 3.96
3847 4544 5.520376 ACCTATATTTGCTCCAAATGCAC 57.480 39.130 12.14 0.00 42.91 4.57
3848 4545 4.955450 ACCTATATTTGCTCCAAATGCACA 59.045 37.500 12.14 0.00 42.91 4.57
3849 4546 5.421693 ACCTATATTTGCTCCAAATGCACAA 59.578 36.000 12.14 0.00 42.91 3.33
3850 4547 5.750067 CCTATATTTGCTCCAAATGCACAAC 59.250 40.000 12.14 0.00 42.91 3.32
3851 4548 1.850377 TTTGCTCCAAATGCACAACG 58.150 45.000 0.00 0.00 40.40 4.10
3852 4549 0.743688 TTGCTCCAAATGCACAACGT 59.256 45.000 0.00 0.00 40.40 3.99
3853 4550 1.598882 TGCTCCAAATGCACAACGTA 58.401 45.000 0.00 0.00 35.31 3.57
3854 4551 1.265635 TGCTCCAAATGCACAACGTAC 59.734 47.619 0.00 0.00 35.31 3.67
3855 4552 1.265635 GCTCCAAATGCACAACGTACA 59.734 47.619 0.00 0.00 0.00 2.90
3856 4553 2.287308 GCTCCAAATGCACAACGTACAA 60.287 45.455 0.00 0.00 0.00 2.41
3857 4554 3.793801 GCTCCAAATGCACAACGTACAAA 60.794 43.478 0.00 0.00 0.00 2.83
3858 4555 4.545610 CTCCAAATGCACAACGTACAAAT 58.454 39.130 0.00 0.00 0.00 2.32
3859 4556 5.690997 TCCAAATGCACAACGTACAAATA 57.309 34.783 0.00 0.00 0.00 1.40
3860 4557 6.260870 TCCAAATGCACAACGTACAAATAT 57.739 33.333 0.00 0.00 0.00 1.28
3861 4558 7.379098 TCCAAATGCACAACGTACAAATATA 57.621 32.000 0.00 0.00 0.00 0.86
3862 4559 7.990917 TCCAAATGCACAACGTACAAATATAT 58.009 30.769 0.00 0.00 0.00 0.86
3863 4560 9.110502 TCCAAATGCACAACGTACAAATATATA 57.889 29.630 0.00 0.00 0.00 0.86
3864 4561 9.891828 CCAAATGCACAACGTACAAATATATAT 57.108 29.630 0.00 0.00 0.00 0.86
3868 4565 9.938280 ATGCACAACGTACAAATATATATAGGT 57.062 29.630 0.00 0.55 0.00 3.08
3869 4566 9.414295 TGCACAACGTACAAATATATATAGGTC 57.586 33.333 0.00 0.00 0.00 3.85
3870 4567 9.414295 GCACAACGTACAAATATATATAGGTCA 57.586 33.333 0.00 0.00 0.00 4.02
3904 4601 7.464830 AAATATGTAACATGACTGTCTACGC 57.535 36.000 9.51 0.00 33.36 4.42
3905 4602 2.858839 TGTAACATGACTGTCTACGCG 58.141 47.619 3.53 3.53 33.36 6.01
3906 4603 2.485038 TGTAACATGACTGTCTACGCGA 59.515 45.455 15.93 0.00 33.36 5.87
3907 4604 2.264109 AACATGACTGTCTACGCGAG 57.736 50.000 15.93 6.12 33.36 5.03
3908 4605 0.179161 ACATGACTGTCTACGCGAGC 60.179 55.000 15.93 0.00 0.00 5.03
3909 4606 0.179163 CATGACTGTCTACGCGAGCA 60.179 55.000 15.93 4.74 0.00 4.26
3910 4607 0.179161 ATGACTGTCTACGCGAGCAC 60.179 55.000 15.93 6.08 0.00 4.40
3911 4608 1.209383 GACTGTCTACGCGAGCACA 59.791 57.895 15.93 10.88 0.00 4.57
3912 4609 0.386858 GACTGTCTACGCGAGCACAA 60.387 55.000 15.93 0.00 0.00 3.33
3913 4610 0.031585 ACTGTCTACGCGAGCACAAA 59.968 50.000 15.93 0.00 0.00 2.83
3914 4611 1.136690 CTGTCTACGCGAGCACAAAA 58.863 50.000 15.93 0.00 0.00 2.44
3915 4612 1.525197 CTGTCTACGCGAGCACAAAAA 59.475 47.619 15.93 0.00 0.00 1.94
3938 4635 8.587952 AAAATAAGTGGAACAAAGTAACATGC 57.412 30.769 0.00 0.00 44.16 4.06
3939 4636 6.892658 ATAAGTGGAACAAAGTAACATGCA 57.107 33.333 0.00 0.00 44.16 3.96
3940 4637 5.789643 AAGTGGAACAAAGTAACATGCAT 57.210 34.783 0.00 0.00 44.16 3.96
3941 4638 5.125100 AGTGGAACAAAGTAACATGCATG 57.875 39.130 25.09 25.09 44.16 4.06
3942 4639 4.022068 AGTGGAACAAAGTAACATGCATGG 60.022 41.667 29.41 12.83 44.16 3.66
3943 4640 3.894427 TGGAACAAAGTAACATGCATGGT 59.106 39.130 29.41 26.41 31.92 3.55
3944 4641 4.343526 TGGAACAAAGTAACATGCATGGTT 59.656 37.500 29.41 20.47 31.92 3.67
3945 4642 4.685628 GGAACAAAGTAACATGCATGGTTG 59.314 41.667 29.41 20.26 0.00 3.77
3985 4682 8.774890 TGCAAAAATTGTAATATGCATGACTT 57.225 26.923 10.16 2.89 38.73 3.01
3986 4683 8.657729 TGCAAAAATTGTAATATGCATGACTTG 58.342 29.630 10.16 6.21 38.73 3.16
3987 4684 8.871862 GCAAAAATTGTAATATGCATGACTTGA 58.128 29.630 10.16 0.00 34.10 3.02
3992 4689 9.908152 AATTGTAATATGCATGACTTGATGATG 57.092 29.630 10.16 0.00 0.00 3.07
3993 4690 8.454570 TTGTAATATGCATGACTTGATGATGT 57.545 30.769 10.16 0.00 0.00 3.06
3994 4691 7.867752 TGTAATATGCATGACTTGATGATGTG 58.132 34.615 10.16 0.00 0.00 3.21
3995 4692 5.959618 ATATGCATGACTTGATGATGTGG 57.040 39.130 10.16 0.00 0.00 4.17
3996 4693 1.746787 TGCATGACTTGATGATGTGGC 59.253 47.619 0.00 0.00 0.00 5.01
3997 4694 1.746787 GCATGACTTGATGATGTGGCA 59.253 47.619 0.00 0.00 0.00 4.92
3998 4695 2.361119 GCATGACTTGATGATGTGGCAT 59.639 45.455 0.00 0.00 0.00 4.40
3999 4696 3.566742 GCATGACTTGATGATGTGGCATA 59.433 43.478 0.00 0.00 0.00 3.14
4000 4697 4.320275 GCATGACTTGATGATGTGGCATAG 60.320 45.833 0.00 0.00 0.00 2.23
4001 4698 4.492494 TGACTTGATGATGTGGCATAGT 57.508 40.909 0.00 0.00 0.00 2.12
4002 4699 4.847198 TGACTTGATGATGTGGCATAGTT 58.153 39.130 0.00 0.00 0.00 2.24
4003 4700 4.637091 TGACTTGATGATGTGGCATAGTTG 59.363 41.667 0.00 0.00 0.00 3.16
4039 4736 8.863872 AAAAATAGGTAGTGAGTTGCAACTAT 57.136 30.769 31.20 21.35 39.88 2.12
4040 4737 8.863872 AAAATAGGTAGTGAGTTGCAACTATT 57.136 30.769 31.20 20.37 39.88 1.73
4041 4738 8.863872 AAATAGGTAGTGAGTTGCAACTATTT 57.136 30.769 31.20 24.25 39.88 1.40
4042 4739 9.953565 AAATAGGTAGTGAGTTGCAACTATTTA 57.046 29.630 31.20 19.30 39.88 1.40
4043 4740 9.953565 AATAGGTAGTGAGTTGCAACTATTTAA 57.046 29.630 31.20 13.60 39.88 1.52
4044 4741 7.907214 AGGTAGTGAGTTGCAACTATTTAAG 57.093 36.000 31.20 0.00 39.88 1.85
4045 4742 7.676947 AGGTAGTGAGTTGCAACTATTTAAGA 58.323 34.615 31.20 10.89 39.88 2.10
4046 4743 8.154856 AGGTAGTGAGTTGCAACTATTTAAGAA 58.845 33.333 31.20 9.52 39.88 2.52
4047 4744 8.947115 GGTAGTGAGTTGCAACTATTTAAGAAT 58.053 33.333 31.20 6.20 39.88 2.40
4086 4783 6.435430 TGATCATTGAGGTGGTTTAAATCG 57.565 37.500 0.00 0.00 0.00 3.34
4087 4784 4.695217 TCATTGAGGTGGTTTAAATCGC 57.305 40.909 3.29 3.29 0.00 4.58
4088 4785 4.075682 TCATTGAGGTGGTTTAAATCGCA 58.924 39.130 13.73 0.00 0.00 5.10
4089 4786 4.704540 TCATTGAGGTGGTTTAAATCGCAT 59.295 37.500 13.73 6.62 0.00 4.73
4090 4787 5.184864 TCATTGAGGTGGTTTAAATCGCATT 59.815 36.000 13.73 1.55 0.00 3.56
4091 4788 5.461032 TTGAGGTGGTTTAAATCGCATTT 57.539 34.783 13.73 0.00 36.29 2.32
4092 4789 6.576662 TTGAGGTGGTTTAAATCGCATTTA 57.423 33.333 13.73 0.00 33.82 1.40
4093 4790 6.576662 TGAGGTGGTTTAAATCGCATTTAA 57.423 33.333 13.73 8.88 41.51 1.52
4094 4791 6.383415 TGAGGTGGTTTAAATCGCATTTAAC 58.617 36.000 13.73 0.00 42.54 2.01
4095 4792 6.016192 TGAGGTGGTTTAAATCGCATTTAACA 60.016 34.615 13.73 0.00 42.54 2.41
4096 4793 6.386654 AGGTGGTTTAAATCGCATTTAACAG 58.613 36.000 13.73 0.00 42.54 3.16
4097 4794 6.015772 AGGTGGTTTAAATCGCATTTAACAGT 60.016 34.615 13.73 0.00 42.54 3.55
4098 4795 6.307077 GGTGGTTTAAATCGCATTTAACAGTC 59.693 38.462 13.73 0.00 42.54 3.51
4099 4796 6.858993 GTGGTTTAAATCGCATTTAACAGTCA 59.141 34.615 7.14 7.01 42.54 3.41
4100 4797 6.858993 TGGTTTAAATCGCATTTAACAGTCAC 59.141 34.615 11.27 8.11 42.54 3.67
4101 4798 6.032042 GGTTTAAATCGCATTTAACAGTCACG 59.968 38.462 11.27 0.00 42.54 4.35
4102 4799 3.740044 AATCGCATTTAACAGTCACGG 57.260 42.857 0.00 0.00 0.00 4.94
4103 4800 2.157834 TCGCATTTAACAGTCACGGT 57.842 45.000 0.00 0.00 0.00 4.83
4104 4801 2.485903 TCGCATTTAACAGTCACGGTT 58.514 42.857 0.00 0.00 0.00 4.44
4105 4802 2.222213 TCGCATTTAACAGTCACGGTTG 59.778 45.455 3.26 0.00 0.00 3.77
4106 4803 2.222213 CGCATTTAACAGTCACGGTTGA 59.778 45.455 3.26 0.00 0.00 3.18
4107 4804 3.664276 CGCATTTAACAGTCACGGTTGAG 60.664 47.826 3.26 0.00 30.10 3.02
4108 4805 3.250040 GCATTTAACAGTCACGGTTGAGT 59.750 43.478 3.26 0.00 35.62 3.41
4109 4806 4.261031 GCATTTAACAGTCACGGTTGAGTT 60.261 41.667 3.26 0.00 32.63 3.01
4140 4838 0.322546 GGTGTGTTCCCAAGGCTAGG 60.323 60.000 0.00 0.00 0.00 3.02
4151 4849 0.253207 AAGGCTAGGGTGGGCTAGTT 60.253 55.000 0.00 0.00 38.65 2.24
4196 4898 4.038361 CGAAAGGATAGATCGACACAGTG 58.962 47.826 0.00 0.00 38.82 3.66
4210 4912 4.142578 CGACACAGTGTGCTACTAATCTCT 60.143 45.833 23.21 0.00 37.60 3.10
4221 4923 7.039293 TGTGCTACTAATCTCTGTGAAAACCTA 60.039 37.037 0.00 0.00 0.00 3.08
4231 4933 6.015991 TCTGTGAAAACCTAAAAACCCCTA 57.984 37.500 0.00 0.00 0.00 3.53
4235 4937 2.205022 AACCTAAAAACCCCTACGGC 57.795 50.000 0.00 0.00 33.26 5.68
4236 4938 0.036105 ACCTAAAAACCCCTACGGCG 60.036 55.000 4.80 4.80 33.26 6.46
4248 4950 1.484356 CTACGGCGATTAGGGTTTCG 58.516 55.000 16.62 0.00 38.37 3.46
4260 4962 1.218316 GGTTTCGAGCGGACCAGAT 59.782 57.895 10.12 0.00 33.61 2.90
4263 4965 2.852495 TTTCGAGCGGACCAGATGGC 62.852 60.000 0.00 0.00 39.32 4.40
4271 4973 4.498520 ACCAGATGGCGCTCGTCG 62.499 66.667 7.64 5.37 39.32 5.12
4292 4994 1.630126 ATCTTCATGGCGAGGTGGCT 61.630 55.000 0.00 0.00 45.14 4.75
4293 4995 2.046023 TTCATGGCGAGGTGGCTG 60.046 61.111 0.00 0.00 45.14 4.85
4305 5007 1.675219 GTGGCTGGGACTTCCGTTA 59.325 57.895 0.00 0.00 38.76 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 60 4.260212 CGAATTCGAATAAAGCGTCCACAT 60.260 41.667 23.29 0.00 43.02 3.21
41 61 3.061563 CGAATTCGAATAAAGCGTCCACA 59.938 43.478 23.29 0.00 43.02 4.17
42 62 3.305094 TCGAATTCGAATAAAGCGTCCAC 59.695 43.478 27.36 0.00 46.30 4.02
43 63 3.513662 TCGAATTCGAATAAAGCGTCCA 58.486 40.909 27.36 0.31 46.30 4.02
56 76 3.369385 ACGGCACTAACTATCGAATTCG 58.631 45.455 21.78 21.78 41.45 3.34
57 77 5.624491 GTCTACGGCACTAACTATCGAATTC 59.376 44.000 0.00 0.00 0.00 2.17
58 78 5.517904 GTCTACGGCACTAACTATCGAATT 58.482 41.667 0.00 0.00 0.00 2.17
129 150 1.259544 CGACGCGAAAACTGGTTTGC 61.260 55.000 15.93 0.00 32.36 3.68
159 180 4.083862 GACGGAGCTCCCACCCAC 62.084 72.222 27.20 8.26 34.14 4.61
194 216 0.041238 AATCTGTCCAGGTCCTCGGA 59.959 55.000 6.08 6.08 0.00 4.55
307 529 4.334759 GGAGTACTGCTCAACGTATGACTA 59.665 45.833 7.20 0.00 45.88 2.59
399 626 1.474330 TCGCTCTCTGTATCCTGCAA 58.526 50.000 0.00 0.00 0.00 4.08
455 682 6.820656 AGCTCACTTTAATTATCTGTGACTGG 59.179 38.462 9.95 4.98 34.51 4.00
458 685 7.602517 ACAGCTCACTTTAATTATCTGTGAC 57.397 36.000 9.95 8.32 34.51 3.67
459 686 7.877612 TCAACAGCTCACTTTAATTATCTGTGA 59.122 33.333 12.16 12.16 34.27 3.58
460 687 8.032952 TCAACAGCTCACTTTAATTATCTGTG 57.967 34.615 0.00 6.65 34.27 3.66
461 688 8.097038 TCTCAACAGCTCACTTTAATTATCTGT 58.903 33.333 0.00 0.00 35.34 3.41
462 689 8.386606 GTCTCAACAGCTCACTTTAATTATCTG 58.613 37.037 0.00 0.00 0.00 2.90
463 690 8.097038 TGTCTCAACAGCTCACTTTAATTATCT 58.903 33.333 0.00 0.00 0.00 1.98
464 691 8.256611 TGTCTCAACAGCTCACTTTAATTATC 57.743 34.615 0.00 0.00 0.00 1.75
465 692 8.621532 TTGTCTCAACAGCTCACTTTAATTAT 57.378 30.769 0.00 0.00 36.57 1.28
466 693 8.506437 CATTGTCTCAACAGCTCACTTTAATTA 58.494 33.333 0.00 0.00 36.57 1.40
468 695 6.072286 CCATTGTCTCAACAGCTCACTTTAAT 60.072 38.462 0.00 0.00 36.57 1.40
469 696 5.239306 CCATTGTCTCAACAGCTCACTTTAA 59.761 40.000 0.00 0.00 36.57 1.52
470 697 4.756642 CCATTGTCTCAACAGCTCACTTTA 59.243 41.667 0.00 0.00 36.57 1.85
512 739 4.188462 TCAGCTTTCTTTCAAACGAGACA 58.812 39.130 0.00 0.00 0.00 3.41
518 745 4.984785 GGTCCATTCAGCTTTCTTTCAAAC 59.015 41.667 0.00 0.00 0.00 2.93
520 747 4.214310 TGGTCCATTCAGCTTTCTTTCAA 58.786 39.130 0.00 0.00 0.00 2.69
526 753 2.893489 ACCTTTGGTCCATTCAGCTTTC 59.107 45.455 0.00 0.00 0.00 2.62
598 828 3.208884 AACGCGTCGAGACTTGGCT 62.209 57.895 14.44 0.00 0.00 4.75
626 856 2.666317 GCCACCAATAATAGGCCTGTT 58.334 47.619 19.51 19.51 41.25 3.16
710 941 1.887707 GTATCGGCGGGAAAGCAGG 60.888 63.158 7.21 0.00 39.27 4.85
757 988 2.373335 ACACCCCTTTGTGCATTACA 57.627 45.000 0.00 0.00 39.93 2.41
774 1006 2.986290 CACGGGCTCCACCATACA 59.014 61.111 0.00 0.00 42.05 2.29
822 1054 2.225963 CCGTGTACCCGATATGTCTCTC 59.774 54.545 0.00 0.00 0.00 3.20
923 1163 1.977009 GCTTTGAAAGGTCCCGGGG 60.977 63.158 23.50 6.77 0.00 5.73
924 1164 1.977009 GGCTTTGAAAGGTCCCGGG 60.977 63.158 16.85 16.85 0.00 5.73
926 1166 1.228429 TGGGCTTTGAAAGGTCCCG 60.228 57.895 13.62 0.00 39.82 5.14
927 1167 1.536073 GCTGGGCTTTGAAAGGTCCC 61.536 60.000 12.17 12.17 37.49 4.46
982 1245 1.079875 ATTAATCACGCGCGGTCGTT 61.080 50.000 35.22 23.11 41.21 3.85
1837 2159 9.888878 TCAATACTGCTATGTACGTAAATCTAC 57.111 33.333 0.27 0.00 0.00 2.59
1920 2249 1.941999 GAAGCCAGCACCAATCCAGC 61.942 60.000 0.00 0.00 0.00 4.85
1942 2271 3.003689 CCATGCCTTCTACGCCAATTAAG 59.996 47.826 0.00 0.00 0.00 1.85
1973 2302 0.957395 AGGTCGGCATGCAAGAACAG 60.957 55.000 25.52 7.53 0.00 3.16
2185 2516 5.791336 ACTTTGTTCTTTCATTCCCCTTC 57.209 39.130 0.00 0.00 0.00 3.46
2238 2576 7.609760 ACTCGACATGCAGTTATTTCATTTA 57.390 32.000 0.00 0.00 0.00 1.40
2254 2593 5.856455 CGGCTTGAAAAATTTAACTCGACAT 59.144 36.000 0.00 0.00 0.00 3.06
2271 2610 3.921677 ACGTCTTCTAAAATCGGCTTGA 58.078 40.909 0.00 0.00 0.00 3.02
2285 2624 7.908193 AACATTTTAATCACACAACGTCTTC 57.092 32.000 0.00 0.00 0.00 2.87
2333 2739 6.406370 CAAGTCACAGTCTCCATTAACCATA 58.594 40.000 0.00 0.00 0.00 2.74
2335 2741 4.504864 CCAAGTCACAGTCTCCATTAACCA 60.505 45.833 0.00 0.00 0.00 3.67
2336 2742 4.003648 CCAAGTCACAGTCTCCATTAACC 58.996 47.826 0.00 0.00 0.00 2.85
2337 2743 4.894784 TCCAAGTCACAGTCTCCATTAAC 58.105 43.478 0.00 0.00 0.00 2.01
2338 2744 5.560722 TTCCAAGTCACAGTCTCCATTAA 57.439 39.130 0.00 0.00 0.00 1.40
2340 2746 4.137543 GTTTCCAAGTCACAGTCTCCATT 58.862 43.478 0.00 0.00 0.00 3.16
2345 2751 1.202651 CGGGTTTCCAAGTCACAGTCT 60.203 52.381 0.00 0.00 0.00 3.24
2346 2752 1.226746 CGGGTTTCCAAGTCACAGTC 58.773 55.000 0.00 0.00 0.00 3.51
2402 2810 8.508062 TCTACATCTAAAATAAACGCTGCAAAA 58.492 29.630 0.00 0.00 0.00 2.44
2406 2887 7.235430 ACTCTACATCTAAAATAAACGCTGC 57.765 36.000 0.00 0.00 0.00 5.25
2423 2904 6.208402 TGGCATGCTTTAATTCAAACTCTACA 59.792 34.615 18.92 0.00 0.00 2.74
2426 2907 5.717119 CTGGCATGCTTTAATTCAAACTCT 58.283 37.500 18.92 0.00 0.00 3.24
2429 2910 3.995705 TGCTGGCATGCTTTAATTCAAAC 59.004 39.130 18.92 1.14 0.00 2.93
2430 2911 3.995705 GTGCTGGCATGCTTTAATTCAAA 59.004 39.130 18.92 0.00 0.00 2.69
2432 2913 2.827322 AGTGCTGGCATGCTTTAATTCA 59.173 40.909 18.92 3.92 0.00 2.57
2435 2916 3.967332 AAAGTGCTGGCATGCTTTAAT 57.033 38.095 18.92 0.00 30.45 1.40
2436 2917 3.391965 CAAAAGTGCTGGCATGCTTTAA 58.608 40.909 18.92 0.00 31.78 1.52
2437 2918 3.029320 CAAAAGTGCTGGCATGCTTTA 57.971 42.857 18.92 3.65 31.78 1.85
2438 2919 1.873698 CAAAAGTGCTGGCATGCTTT 58.126 45.000 18.92 6.07 33.20 3.51
2439 2920 3.599412 CAAAAGTGCTGGCATGCTT 57.401 47.368 18.92 0.00 0.00 3.91
2565 3214 1.740285 CCTCGGTCTCCATTACCCG 59.260 63.158 0.00 0.00 41.75 5.28
2568 3217 1.653151 GTTGCCTCGGTCTCCATTAC 58.347 55.000 0.00 0.00 0.00 1.89
3250 3901 1.529244 GGCCACAAGCAGGACAACT 60.529 57.895 0.00 0.00 46.50 3.16
3419 4113 7.197071 TGCGACAAAGTACTCATAAACAAAT 57.803 32.000 0.00 0.00 0.00 2.32
3502 4197 1.609635 TTACGAGCAGCCGATGGGAA 61.610 55.000 9.87 0.00 34.06 3.97
3506 4203 1.640428 TTCTTTACGAGCAGCCGATG 58.360 50.000 9.87 0.00 0.00 3.84
3510 4207 4.392138 AGTGTATTTTCTTTACGAGCAGCC 59.608 41.667 0.00 0.00 0.00 4.85
3518 4215 5.992729 TCGTGGCAAGTGTATTTTCTTTAC 58.007 37.500 0.00 0.00 0.00 2.01
3530 4227 1.468520 CCTTGGTTATCGTGGCAAGTG 59.531 52.381 0.00 0.00 0.00 3.16
3531 4228 1.613255 CCCTTGGTTATCGTGGCAAGT 60.613 52.381 0.00 0.00 0.00 3.16
3532 4229 1.094785 CCCTTGGTTATCGTGGCAAG 58.905 55.000 0.00 0.00 0.00 4.01
3533 4230 0.963355 GCCCTTGGTTATCGTGGCAA 60.963 55.000 0.00 0.00 38.73 4.52
3534 4231 1.377987 GCCCTTGGTTATCGTGGCA 60.378 57.895 0.00 0.00 38.73 4.92
3535 4232 1.377987 TGCCCTTGGTTATCGTGGC 60.378 57.895 0.00 0.00 39.33 5.01
3536 4233 0.035439 AGTGCCCTTGGTTATCGTGG 60.035 55.000 0.00 0.00 0.00 4.94
3537 4234 1.821216 AAGTGCCCTTGGTTATCGTG 58.179 50.000 0.00 0.00 0.00 4.35
3538 4235 2.835764 TCTAAGTGCCCTTGGTTATCGT 59.164 45.455 0.00 0.00 31.55 3.73
3539 4236 3.118738 AGTCTAAGTGCCCTTGGTTATCG 60.119 47.826 0.00 0.00 31.55 2.92
3540 4237 4.443621 GAGTCTAAGTGCCCTTGGTTATC 58.556 47.826 0.00 0.00 31.55 1.75
3541 4238 3.200165 GGAGTCTAAGTGCCCTTGGTTAT 59.800 47.826 0.00 0.00 31.55 1.89
3542 4239 2.570302 GGAGTCTAAGTGCCCTTGGTTA 59.430 50.000 0.00 0.00 31.55 2.85
3543 4240 1.351350 GGAGTCTAAGTGCCCTTGGTT 59.649 52.381 0.00 0.00 31.55 3.67
3544 4241 0.984995 GGAGTCTAAGTGCCCTTGGT 59.015 55.000 0.00 0.00 31.55 3.67
3545 4242 0.984230 TGGAGTCTAAGTGCCCTTGG 59.016 55.000 0.00 0.00 31.89 3.61
3546 4243 2.859165 TTGGAGTCTAAGTGCCCTTG 57.141 50.000 0.00 0.00 31.89 3.61
3547 4244 5.398012 GGAATATTGGAGTCTAAGTGCCCTT 60.398 44.000 0.00 0.00 34.56 3.95
3548 4245 4.103311 GGAATATTGGAGTCTAAGTGCCCT 59.897 45.833 0.00 0.00 0.00 5.19
3549 4246 4.103311 AGGAATATTGGAGTCTAAGTGCCC 59.897 45.833 0.00 0.00 0.00 5.36
3550 4247 5.071115 AGAGGAATATTGGAGTCTAAGTGCC 59.929 44.000 0.00 0.00 0.00 5.01
3551 4248 6.168270 AGAGGAATATTGGAGTCTAAGTGC 57.832 41.667 0.00 0.00 0.00 4.40
3552 4249 9.757227 CTTTAGAGGAATATTGGAGTCTAAGTG 57.243 37.037 0.00 0.00 30.37 3.16
3553 4250 9.495382 ACTTTAGAGGAATATTGGAGTCTAAGT 57.505 33.333 0.00 0.00 30.37 2.24
3557 4254 9.890915 ATCTACTTTAGAGGAATATTGGAGTCT 57.109 33.333 0.00 0.00 38.38 3.24
3558 4255 9.921637 CATCTACTTTAGAGGAATATTGGAGTC 57.078 37.037 0.00 0.00 38.80 3.36
3559 4256 9.661954 TCATCTACTTTAGAGGAATATTGGAGT 57.338 33.333 0.00 0.00 42.00 3.85
3562 4259 9.160496 GCATCATCTACTTTAGAGGAATATTGG 57.840 37.037 1.99 0.00 46.96 3.16
3563 4260 9.160496 GGCATCATCTACTTTAGAGGAATATTG 57.840 37.037 1.99 0.00 46.96 1.90
3564 4261 8.325046 GGGCATCATCTACTTTAGAGGAATATT 58.675 37.037 1.99 0.00 46.96 1.28
3565 4262 7.092668 GGGGCATCATCTACTTTAGAGGAATAT 60.093 40.741 1.99 0.00 46.96 1.28
3566 4263 6.213600 GGGGCATCATCTACTTTAGAGGAATA 59.786 42.308 1.99 0.00 46.96 1.75
3567 4264 5.013599 GGGGCATCATCTACTTTAGAGGAAT 59.986 44.000 1.99 0.00 46.96 3.01
3568 4265 4.348168 GGGGCATCATCTACTTTAGAGGAA 59.652 45.833 1.99 0.00 46.96 3.36
3570 4267 3.648067 TGGGGCATCATCTACTTTAGAGG 59.352 47.826 0.00 0.00 38.38 3.69
3571 4268 4.636249 GTGGGGCATCATCTACTTTAGAG 58.364 47.826 0.00 0.00 38.38 2.43
3572 4269 3.069586 CGTGGGGCATCATCTACTTTAGA 59.930 47.826 0.00 0.00 39.50 2.10
3573 4270 3.393800 CGTGGGGCATCATCTACTTTAG 58.606 50.000 0.00 0.00 0.00 1.85
3574 4271 2.484770 GCGTGGGGCATCATCTACTTTA 60.485 50.000 0.00 0.00 42.87 1.85
3575 4272 1.747206 GCGTGGGGCATCATCTACTTT 60.747 52.381 0.00 0.00 42.87 2.66
3576 4273 0.179045 GCGTGGGGCATCATCTACTT 60.179 55.000 0.00 0.00 42.87 2.24
3577 4274 1.447643 GCGTGGGGCATCATCTACT 59.552 57.895 0.00 0.00 42.87 2.57
3578 4275 1.956170 CGCGTGGGGCATCATCTAC 60.956 63.158 0.00 0.00 43.84 2.59
3579 4276 1.966901 AACGCGTGGGGCATCATCTA 61.967 55.000 14.98 0.00 43.84 1.98
3580 4277 3.329542 AACGCGTGGGGCATCATCT 62.330 57.895 14.98 0.00 43.84 2.90
3581 4278 2.824041 AACGCGTGGGGCATCATC 60.824 61.111 14.98 0.00 43.84 2.92
3582 4279 3.133464 CAACGCGTGGGGCATCAT 61.133 61.111 14.98 0.00 43.84 2.45
3585 4282 2.318519 TATAGCAACGCGTGGGGCAT 62.319 55.000 25.83 19.62 43.84 4.40
3586 4283 2.523453 TTATAGCAACGCGTGGGGCA 62.523 55.000 25.83 15.51 43.84 5.36
3587 4284 1.370587 TTTATAGCAACGCGTGGGGC 61.371 55.000 14.98 17.78 38.69 5.80
3588 4285 1.088306 TTTTATAGCAACGCGTGGGG 58.912 50.000 14.98 7.03 0.00 4.96
3589 4286 1.735571 AGTTTTATAGCAACGCGTGGG 59.264 47.619 14.98 10.06 0.00 4.61
3590 4287 3.160545 CAAGTTTTATAGCAACGCGTGG 58.839 45.455 14.98 12.31 0.00 4.94
3591 4288 2.588106 GCAAGTTTTATAGCAACGCGTG 59.412 45.455 14.98 8.57 0.00 5.34
3592 4289 2.723618 CGCAAGTTTTATAGCAACGCGT 60.724 45.455 5.58 5.58 32.59 6.01
3593 4290 1.831812 CGCAAGTTTTATAGCAACGCG 59.168 47.619 3.53 3.53 31.03 6.01
3594 4291 1.577578 GCGCAAGTTTTATAGCAACGC 59.422 47.619 0.30 0.00 41.68 4.84
3595 4292 2.845486 TGCGCAAGTTTTATAGCAACG 58.155 42.857 8.16 0.00 41.68 4.10
3596 4293 5.806286 TCTATGCGCAAGTTTTATAGCAAC 58.194 37.500 17.11 0.00 38.15 4.17
3597 4294 6.618287 ATCTATGCGCAAGTTTTATAGCAA 57.382 33.333 17.11 0.00 38.15 3.91
3598 4295 7.151976 TCTATCTATGCGCAAGTTTTATAGCA 58.848 34.615 17.11 0.65 41.68 3.49
3599 4296 7.582435 TCTATCTATGCGCAAGTTTTATAGC 57.418 36.000 17.11 0.00 41.68 2.97
3600 4297 9.144747 ACATCTATCTATGCGCAAGTTTTATAG 57.855 33.333 17.11 15.20 41.68 1.31
3601 4298 9.489084 AACATCTATCTATGCGCAAGTTTTATA 57.511 29.630 17.11 6.16 41.68 0.98
3602 4299 7.969536 ACATCTATCTATGCGCAAGTTTTAT 57.030 32.000 17.11 5.22 41.68 1.40
3603 4300 7.786178 AACATCTATCTATGCGCAAGTTTTA 57.214 32.000 17.11 0.00 41.68 1.52
3604 4301 6.683974 AACATCTATCTATGCGCAAGTTTT 57.316 33.333 17.11 0.00 41.68 2.43
3605 4302 6.458751 CCAAACATCTATCTATGCGCAAGTTT 60.459 38.462 17.11 11.12 41.68 2.66
3606 4303 5.008019 CCAAACATCTATCTATGCGCAAGTT 59.992 40.000 17.11 10.88 41.68 2.66
3607 4304 4.512944 CCAAACATCTATCTATGCGCAAGT 59.487 41.667 17.11 0.00 41.68 3.16
3608 4305 4.751600 TCCAAACATCTATCTATGCGCAAG 59.248 41.667 17.11 13.70 43.44 4.01
3609 4306 4.702831 TCCAAACATCTATCTATGCGCAA 58.297 39.130 17.11 0.00 0.00 4.85
3610 4307 4.335400 TCCAAACATCTATCTATGCGCA 57.665 40.909 14.96 14.96 0.00 6.09
3611 4308 5.673337 TTTCCAAACATCTATCTATGCGC 57.327 39.130 0.00 0.00 0.00 6.09
3621 4318 9.995003 TGCAATAGTTTTATTTTCCAAACATCT 57.005 25.926 0.00 0.00 35.66 2.90
3642 4339 9.667989 GAGCATTCTTAAATTTGTTTTTGCAAT 57.332 25.926 0.00 0.00 31.43 3.56
3643 4340 8.891720 AGAGCATTCTTAAATTTGTTTTTGCAA 58.108 25.926 15.13 0.00 31.43 4.08
3644 4341 8.436046 AGAGCATTCTTAAATTTGTTTTTGCA 57.564 26.923 15.13 0.00 31.43 4.08
3645 4342 9.161684 CAAGAGCATTCTTAAATTTGTTTTTGC 57.838 29.630 0.00 5.20 41.71 3.68
3698 4395 9.926158 TTTACAACATTTTATCACATGCTTCAT 57.074 25.926 0.00 0.00 0.00 2.57
3699 4396 9.755804 TTTTACAACATTTTATCACATGCTTCA 57.244 25.926 0.00 0.00 0.00 3.02
3771 4468 8.916654 CGCTCGTTTGACTTCAATCTAATATAT 58.083 33.333 0.00 0.00 35.55 0.86
3772 4469 7.919091 ACGCTCGTTTGACTTCAATCTAATATA 59.081 33.333 0.00 0.00 35.55 0.86
3773 4470 6.757010 ACGCTCGTTTGACTTCAATCTAATAT 59.243 34.615 0.00 0.00 35.55 1.28
3774 4471 6.097356 ACGCTCGTTTGACTTCAATCTAATA 58.903 36.000 0.00 0.00 35.55 0.98
3775 4472 4.929808 ACGCTCGTTTGACTTCAATCTAAT 59.070 37.500 0.00 0.00 35.55 1.73
3776 4473 4.304110 ACGCTCGTTTGACTTCAATCTAA 58.696 39.130 0.00 0.00 35.55 2.10
3777 4474 3.909430 ACGCTCGTTTGACTTCAATCTA 58.091 40.909 0.00 0.00 35.55 1.98
3778 4475 2.731976 GACGCTCGTTTGACTTCAATCT 59.268 45.455 0.00 0.00 35.55 2.40
3779 4476 2.475111 TGACGCTCGTTTGACTTCAATC 59.525 45.455 0.00 0.00 35.55 2.67
3780 4477 2.479837 TGACGCTCGTTTGACTTCAAT 58.520 42.857 0.00 0.00 35.55 2.57
3781 4478 1.929230 TGACGCTCGTTTGACTTCAA 58.071 45.000 0.00 0.00 0.00 2.69
3782 4479 2.148916 ATGACGCTCGTTTGACTTCA 57.851 45.000 0.00 0.00 0.00 3.02
3783 4480 2.731976 AGAATGACGCTCGTTTGACTTC 59.268 45.455 0.00 0.00 0.00 3.01
3784 4481 2.755650 AGAATGACGCTCGTTTGACTT 58.244 42.857 0.00 0.00 0.00 3.01
3785 4482 2.440539 AGAATGACGCTCGTTTGACT 57.559 45.000 0.00 0.00 0.00 3.41
3786 4483 4.084745 TGTTAAGAATGACGCTCGTTTGAC 60.085 41.667 0.00 0.00 0.00 3.18
3787 4484 4.052608 TGTTAAGAATGACGCTCGTTTGA 58.947 39.130 0.00 0.00 0.00 2.69
3788 4485 4.383774 TGTTAAGAATGACGCTCGTTTG 57.616 40.909 0.00 0.00 0.00 2.93
3789 4486 5.412526 TTTGTTAAGAATGACGCTCGTTT 57.587 34.783 0.00 0.00 0.00 3.60
3790 4487 5.412526 TTTTGTTAAGAATGACGCTCGTT 57.587 34.783 0.00 0.00 0.00 3.85
3791 4488 5.412526 TTTTTGTTAAGAATGACGCTCGT 57.587 34.783 0.00 0.00 0.00 4.18
3792 4489 5.851177 ACATTTTTGTTAAGAATGACGCTCG 59.149 36.000 10.57 0.00 35.36 5.03
3793 4490 6.636850 ACACATTTTTGTTAAGAATGACGCTC 59.363 34.615 10.57 0.00 35.36 5.03
3794 4491 6.503524 ACACATTTTTGTTAAGAATGACGCT 58.496 32.000 10.57 0.00 35.36 5.07
3795 4492 6.747659 ACACATTTTTGTTAAGAATGACGC 57.252 33.333 10.57 0.00 35.36 5.19
3796 4493 9.227490 TGTTACACATTTTTGTTAAGAATGACG 57.773 29.630 10.57 5.26 35.36 4.35
3813 4510 9.284968 GGAGCAAATATAGGTTATGTTACACAT 57.715 33.333 0.00 0.00 42.35 3.21
3814 4511 8.268605 TGGAGCAAATATAGGTTATGTTACACA 58.731 33.333 0.00 0.00 0.00 3.72
3815 4512 8.671384 TGGAGCAAATATAGGTTATGTTACAC 57.329 34.615 0.00 0.00 0.00 2.90
3816 4513 9.688091 TTTGGAGCAAATATAGGTTATGTTACA 57.312 29.630 0.00 0.00 0.00 2.41
3819 4516 8.143835 GCATTTGGAGCAAATATAGGTTATGTT 58.856 33.333 0.00 0.00 41.40 2.71
3820 4517 7.287466 TGCATTTGGAGCAAATATAGGTTATGT 59.713 33.333 0.00 0.00 41.40 2.29
3821 4518 7.596248 GTGCATTTGGAGCAAATATAGGTTATG 59.404 37.037 0.00 0.00 41.40 1.90
3822 4519 7.287466 TGTGCATTTGGAGCAAATATAGGTTAT 59.713 33.333 0.00 0.00 41.40 1.89
3823 4520 6.605194 TGTGCATTTGGAGCAAATATAGGTTA 59.395 34.615 0.00 0.00 41.40 2.85
3824 4521 5.421693 TGTGCATTTGGAGCAAATATAGGTT 59.578 36.000 0.00 0.00 41.40 3.50
3825 4522 4.955450 TGTGCATTTGGAGCAAATATAGGT 59.045 37.500 0.00 0.00 41.40 3.08
3826 4523 5.518848 TGTGCATTTGGAGCAAATATAGG 57.481 39.130 0.00 0.00 41.40 2.57
3827 4524 5.456497 CGTTGTGCATTTGGAGCAAATATAG 59.544 40.000 0.00 0.00 41.40 1.31
3828 4525 5.105957 ACGTTGTGCATTTGGAGCAAATATA 60.106 36.000 0.00 0.00 41.40 0.86
3829 4526 4.175516 CGTTGTGCATTTGGAGCAAATAT 58.824 39.130 0.00 0.00 41.40 1.28
3830 4527 3.005261 ACGTTGTGCATTTGGAGCAAATA 59.995 39.130 0.00 0.00 41.40 1.40
3831 4528 2.224018 ACGTTGTGCATTTGGAGCAAAT 60.224 40.909 0.00 0.00 43.71 2.32
3832 4529 1.135915 ACGTTGTGCATTTGGAGCAAA 59.864 42.857 0.00 0.00 44.64 3.68
3833 4530 0.743688 ACGTTGTGCATTTGGAGCAA 59.256 45.000 0.00 0.00 44.64 3.91
3834 4531 1.265635 GTACGTTGTGCATTTGGAGCA 59.734 47.619 0.00 0.00 40.19 4.26
3835 4532 1.265635 TGTACGTTGTGCATTTGGAGC 59.734 47.619 0.00 0.00 0.00 4.70
3836 4533 3.617540 TTGTACGTTGTGCATTTGGAG 57.382 42.857 0.00 0.00 0.00 3.86
3837 4534 4.576216 ATTTGTACGTTGTGCATTTGGA 57.424 36.364 0.00 0.00 0.00 3.53
3838 4535 9.891828 ATATATATTTGTACGTTGTGCATTTGG 57.108 29.630 0.00 0.00 0.00 3.28
3842 4539 9.938280 ACCTATATATATTTGTACGTTGTGCAT 57.062 29.630 0.00 0.00 0.00 3.96
3843 4540 9.414295 GACCTATATATATTTGTACGTTGTGCA 57.586 33.333 0.00 0.00 0.00 4.57
3844 4541 9.414295 TGACCTATATATATTTGTACGTTGTGC 57.586 33.333 0.00 0.00 0.00 4.57
3878 4575 8.388103 GCGTAGACAGTCATGTTACATATTTTT 58.612 33.333 2.66 0.00 40.68 1.94
3879 4576 7.253983 CGCGTAGACAGTCATGTTACATATTTT 60.254 37.037 2.66 0.00 40.68 1.82
3880 4577 6.198403 CGCGTAGACAGTCATGTTACATATTT 59.802 38.462 2.66 0.00 40.68 1.40
3881 4578 5.685954 CGCGTAGACAGTCATGTTACATATT 59.314 40.000 2.66 0.00 40.68 1.28
3882 4579 5.008316 TCGCGTAGACAGTCATGTTACATAT 59.992 40.000 5.77 0.00 40.68 1.78
3883 4580 4.333372 TCGCGTAGACAGTCATGTTACATA 59.667 41.667 5.77 0.00 40.68 2.29
3884 4581 3.128068 TCGCGTAGACAGTCATGTTACAT 59.872 43.478 5.77 0.00 40.68 2.29
3885 4582 2.485038 TCGCGTAGACAGTCATGTTACA 59.515 45.455 5.77 0.00 40.68 2.41
3886 4583 3.099362 CTCGCGTAGACAGTCATGTTAC 58.901 50.000 5.77 0.00 40.68 2.50
3887 4584 2.477357 GCTCGCGTAGACAGTCATGTTA 60.477 50.000 5.77 0.00 40.68 2.41
3888 4585 1.732732 GCTCGCGTAGACAGTCATGTT 60.733 52.381 5.77 0.00 40.68 2.71
3889 4586 0.179161 GCTCGCGTAGACAGTCATGT 60.179 55.000 5.77 0.00 44.31 3.21
3890 4587 0.179163 TGCTCGCGTAGACAGTCATG 60.179 55.000 5.77 0.00 0.00 3.07
3891 4588 0.179161 GTGCTCGCGTAGACAGTCAT 60.179 55.000 5.77 0.00 0.00 3.06
3892 4589 1.209383 GTGCTCGCGTAGACAGTCA 59.791 57.895 5.77 0.00 0.00 3.41
3893 4590 0.386858 TTGTGCTCGCGTAGACAGTC 60.387 55.000 5.77 0.00 0.00 3.51
3894 4591 0.031585 TTTGTGCTCGCGTAGACAGT 59.968 50.000 5.77 0.00 0.00 3.55
3895 4592 1.136690 TTTTGTGCTCGCGTAGACAG 58.863 50.000 5.77 0.00 0.00 3.51
3896 4593 1.573026 TTTTTGTGCTCGCGTAGACA 58.427 45.000 5.77 4.26 0.00 3.41
3912 4609 9.040939 GCATGTTACTTTGTTCCACTTATTTTT 57.959 29.630 0.00 0.00 0.00 1.94
3913 4610 8.200792 TGCATGTTACTTTGTTCCACTTATTTT 58.799 29.630 0.00 0.00 0.00 1.82
3914 4611 7.721402 TGCATGTTACTTTGTTCCACTTATTT 58.279 30.769 0.00 0.00 0.00 1.40
3915 4612 7.283625 TGCATGTTACTTTGTTCCACTTATT 57.716 32.000 0.00 0.00 0.00 1.40
3916 4613 6.892658 TGCATGTTACTTTGTTCCACTTAT 57.107 33.333 0.00 0.00 0.00 1.73
3917 4614 6.294453 CCATGCATGTTACTTTGTTCCACTTA 60.294 38.462 24.58 0.00 0.00 2.24
3918 4615 5.509501 CCATGCATGTTACTTTGTTCCACTT 60.510 40.000 24.58 0.00 0.00 3.16
3919 4616 4.022068 CCATGCATGTTACTTTGTTCCACT 60.022 41.667 24.58 0.00 0.00 4.00
3920 4617 4.236935 CCATGCATGTTACTTTGTTCCAC 58.763 43.478 24.58 0.00 0.00 4.02
3921 4618 3.894427 ACCATGCATGTTACTTTGTTCCA 59.106 39.130 24.58 0.00 0.00 3.53
3922 4619 4.519540 ACCATGCATGTTACTTTGTTCC 57.480 40.909 24.58 0.00 0.00 3.62
3923 4620 5.827568 CAACCATGCATGTTACTTTGTTC 57.172 39.130 24.58 0.00 0.00 3.18
3958 4655 9.386010 AGTCATGCATATTACAATTTTTGCATT 57.614 25.926 0.00 0.00 45.64 3.56
3960 4657 8.657729 CAAGTCATGCATATTACAATTTTTGCA 58.342 29.630 0.00 0.00 43.42 4.08
3961 4658 8.871862 TCAAGTCATGCATATTACAATTTTTGC 58.128 29.630 0.00 0.00 0.00 3.68
3966 4663 9.908152 CATCATCAAGTCATGCATATTACAATT 57.092 29.630 0.00 0.00 0.00 2.32
3967 4664 9.074576 ACATCATCAAGTCATGCATATTACAAT 57.925 29.630 0.00 0.00 0.00 2.71
3968 4665 8.347035 CACATCATCAAGTCATGCATATTACAA 58.653 33.333 0.00 0.00 0.00 2.41
3969 4666 7.040961 CCACATCATCAAGTCATGCATATTACA 60.041 37.037 0.00 0.00 0.00 2.41
3970 4667 7.303261 CCACATCATCAAGTCATGCATATTAC 58.697 38.462 0.00 0.00 0.00 1.89
3971 4668 6.072342 GCCACATCATCAAGTCATGCATATTA 60.072 38.462 0.00 0.00 0.00 0.98
3972 4669 5.278808 GCCACATCATCAAGTCATGCATATT 60.279 40.000 0.00 0.00 0.00 1.28
3973 4670 4.217767 GCCACATCATCAAGTCATGCATAT 59.782 41.667 0.00 0.00 0.00 1.78
3974 4671 3.566742 GCCACATCATCAAGTCATGCATA 59.433 43.478 0.00 0.00 0.00 3.14
3975 4672 2.361119 GCCACATCATCAAGTCATGCAT 59.639 45.455 0.00 0.00 0.00 3.96
3976 4673 1.746787 GCCACATCATCAAGTCATGCA 59.253 47.619 0.00 0.00 0.00 3.96
3977 4674 1.746787 TGCCACATCATCAAGTCATGC 59.253 47.619 0.00 0.00 0.00 4.06
3978 4675 4.820173 ACTATGCCACATCATCAAGTCATG 59.180 41.667 0.00 0.00 0.00 3.07
3979 4676 5.045012 ACTATGCCACATCATCAAGTCAT 57.955 39.130 0.00 0.00 0.00 3.06
3980 4677 4.492494 ACTATGCCACATCATCAAGTCA 57.508 40.909 0.00 0.00 0.00 3.41
3981 4678 5.165911 CAACTATGCCACATCATCAAGTC 57.834 43.478 0.00 0.00 0.00 3.01
4014 4711 8.863872 ATAGTTGCAACTCACTACCTATTTTT 57.136 30.769 34.29 8.62 40.37 1.94
4015 4712 8.863872 AATAGTTGCAACTCACTACCTATTTT 57.136 30.769 34.29 9.28 40.37 1.82
4016 4713 8.863872 AAATAGTTGCAACTCACTACCTATTT 57.136 30.769 34.29 25.49 40.37 1.40
4017 4714 9.953565 TTAAATAGTTGCAACTCACTACCTATT 57.046 29.630 34.29 21.71 40.37 1.73
4018 4715 9.601217 CTTAAATAGTTGCAACTCACTACCTAT 57.399 33.333 34.29 17.27 40.37 2.57
4019 4716 8.809066 TCTTAAATAGTTGCAACTCACTACCTA 58.191 33.333 34.29 15.70 40.37 3.08
4020 4717 7.676947 TCTTAAATAGTTGCAACTCACTACCT 58.323 34.615 34.29 15.39 40.37 3.08
4021 4718 7.900782 TCTTAAATAGTTGCAACTCACTACC 57.099 36.000 34.29 3.08 40.37 3.18
4060 4757 8.786898 CGATTTAAACCACCTCAATGATCATAT 58.213 33.333 9.04 0.00 0.00 1.78
4061 4758 7.255104 GCGATTTAAACCACCTCAATGATCATA 60.255 37.037 9.04 0.00 0.00 2.15
4062 4759 6.460123 GCGATTTAAACCACCTCAATGATCAT 60.460 38.462 1.18 1.18 0.00 2.45
4063 4760 5.163663 GCGATTTAAACCACCTCAATGATCA 60.164 40.000 0.00 0.00 0.00 2.92
4064 4761 5.163663 TGCGATTTAAACCACCTCAATGATC 60.164 40.000 0.00 0.00 0.00 2.92
4065 4762 4.704540 TGCGATTTAAACCACCTCAATGAT 59.295 37.500 0.00 0.00 0.00 2.45
4066 4763 4.075682 TGCGATTTAAACCACCTCAATGA 58.924 39.130 0.00 0.00 0.00 2.57
4067 4764 4.433186 TGCGATTTAAACCACCTCAATG 57.567 40.909 0.00 0.00 0.00 2.82
4068 4765 5.659440 AATGCGATTTAAACCACCTCAAT 57.341 34.783 0.00 0.00 0.00 2.57
4069 4766 5.461032 AAATGCGATTTAAACCACCTCAA 57.539 34.783 0.00 0.00 0.00 3.02
4070 4767 6.016192 TGTTAAATGCGATTTAAACCACCTCA 60.016 34.615 12.57 5.65 43.85 3.86
4071 4768 6.383415 TGTTAAATGCGATTTAAACCACCTC 58.617 36.000 12.57 3.92 43.85 3.85
4072 4769 6.015772 ACTGTTAAATGCGATTTAAACCACCT 60.016 34.615 12.57 0.00 43.85 4.00
4073 4770 6.153756 ACTGTTAAATGCGATTTAAACCACC 58.846 36.000 12.57 4.86 43.85 4.61
4074 4771 6.858993 TGACTGTTAAATGCGATTTAAACCAC 59.141 34.615 12.57 5.55 43.85 4.16
4075 4772 6.858993 GTGACTGTTAAATGCGATTTAAACCA 59.141 34.615 12.57 8.69 43.85 3.67
4076 4773 6.032042 CGTGACTGTTAAATGCGATTTAAACC 59.968 38.462 12.57 5.81 43.85 3.27
4077 4774 6.032042 CCGTGACTGTTAAATGCGATTTAAAC 59.968 38.462 12.57 8.26 43.85 2.01
4078 4775 6.081049 CCGTGACTGTTAAATGCGATTTAAA 58.919 36.000 12.57 0.00 43.85 1.52
4079 4776 5.179742 ACCGTGACTGTTAAATGCGATTTAA 59.820 36.000 8.88 8.88 41.11 1.52
4080 4777 4.691685 ACCGTGACTGTTAAATGCGATTTA 59.308 37.500 0.00 0.00 33.82 1.40
4081 4778 3.500680 ACCGTGACTGTTAAATGCGATTT 59.499 39.130 0.00 0.00 36.29 2.17
4082 4779 3.071479 ACCGTGACTGTTAAATGCGATT 58.929 40.909 0.00 0.00 0.00 3.34
4083 4780 2.695359 ACCGTGACTGTTAAATGCGAT 58.305 42.857 0.00 0.00 0.00 4.58
4084 4781 2.157834 ACCGTGACTGTTAAATGCGA 57.842 45.000 0.00 0.00 0.00 5.10
4085 4782 2.222213 TCAACCGTGACTGTTAAATGCG 59.778 45.455 0.00 0.00 0.00 4.73
4086 4783 3.250040 ACTCAACCGTGACTGTTAAATGC 59.750 43.478 0.00 0.00 0.00 3.56
4087 4784 5.418310 AACTCAACCGTGACTGTTAAATG 57.582 39.130 0.00 0.00 0.00 2.32
4088 4785 6.445357 AAAACTCAACCGTGACTGTTAAAT 57.555 33.333 0.00 0.00 0.00 1.40
4089 4786 5.883503 AAAACTCAACCGTGACTGTTAAA 57.116 34.783 0.00 0.00 0.00 1.52
4090 4787 5.883503 AAAAACTCAACCGTGACTGTTAA 57.116 34.783 0.00 0.00 0.00 2.01
4118 4815 2.200337 GCCTTGGGAACACACCACC 61.200 63.158 0.00 0.00 42.67 4.61
4121 4818 0.322546 CCTAGCCTTGGGAACACACC 60.323 60.000 0.00 0.00 42.67 4.16
4122 4819 3.249687 CCTAGCCTTGGGAACACAC 57.750 57.895 0.00 0.00 42.67 3.82
4140 4838 2.038837 GCGGTCAAACTAGCCCACC 61.039 63.158 0.00 0.00 0.00 4.61
4151 4849 2.490903 GTTCTACCTAGTGAGCGGTCAA 59.509 50.000 20.46 3.57 33.27 3.18
4196 4898 6.166982 AGGTTTTCACAGAGATTAGTAGCAC 58.833 40.000 0.00 0.00 0.00 4.40
4210 4912 4.579753 CGTAGGGGTTTTTAGGTTTTCACA 59.420 41.667 0.00 0.00 0.00 3.58
4231 4933 0.179119 CTCGAAACCCTAATCGCCGT 60.179 55.000 0.00 0.00 38.87 5.68
4235 4937 0.101759 TCCGCTCGAAACCCTAATCG 59.898 55.000 0.00 0.00 40.31 3.34
4236 4938 1.568606 GTCCGCTCGAAACCCTAATC 58.431 55.000 0.00 0.00 0.00 1.75
4260 4962 3.411418 GAAGATCCGACGAGCGCCA 62.411 63.158 2.29 0.00 39.11 5.69
4263 4965 0.936764 CCATGAAGATCCGACGAGCG 60.937 60.000 0.00 0.00 40.47 5.03
4271 4973 0.533755 CCACCTCGCCATGAAGATCC 60.534 60.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.