Multiple sequence alignment - TraesCS7D01G371600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G371600 chr7D 100.000 5053 0 0 1 5053 480397310 480402362 0.000000e+00 9332.0
1 TraesCS7D01G371600 chr7D 90.056 533 45 8 4523 5052 153169507 153168980 0.000000e+00 684.0
2 TraesCS7D01G371600 chr7D 95.918 49 2 0 3144 3192 497023234 497023282 4.190000e-11 80.5
3 TraesCS7D01G371600 chr7B 92.676 2048 97 24 663 2682 506372105 506374127 0.000000e+00 2902.0
4 TraesCS7D01G371600 chr7B 95.175 1140 43 5 3201 4330 506374687 506375824 0.000000e+00 1790.0
5 TraesCS7D01G371600 chr7B 89.972 359 34 2 3 360 506371409 506371766 3.560000e-126 462.0
6 TraesCS7D01G371600 chr7B 91.279 172 7 5 4334 4504 506376180 506376344 1.420000e-55 228.0
7 TraesCS7D01G371600 chr7A 86.822 1973 155 61 534 2447 514726045 514724119 0.000000e+00 2106.0
8 TraesCS7D01G371600 chr7A 91.705 880 54 10 3201 4066 514723453 514722579 0.000000e+00 1203.0
9 TraesCS7D01G371600 chr7A 91.573 534 39 4 4521 5053 533564559 533564031 0.000000e+00 732.0
10 TraesCS7D01G371600 chr7A 95.556 90 4 0 4229 4318 514722463 514722374 1.470000e-30 145.0
11 TraesCS7D01G371600 chr7A 95.918 49 2 0 3144 3192 562274912 562274960 4.190000e-11 80.5
12 TraesCS7D01G371600 chr1D 96.429 532 17 2 4523 5053 402337289 402336759 0.000000e+00 876.0
13 TraesCS7D01G371600 chr1D 97.778 45 1 0 3148 3192 49932200 49932244 1.510000e-10 78.7
14 TraesCS7D01G371600 chr6D 96.053 532 19 2 4523 5053 453731105 453730575 0.000000e+00 865.0
15 TraesCS7D01G371600 chr6B 92.105 532 37 3 4523 5053 697838934 697838407 0.000000e+00 745.0
16 TraesCS7D01G371600 chr6B 89.533 535 50 6 4521 5053 7761432 7761962 0.000000e+00 673.0
17 TraesCS7D01G371600 chr6B 89.306 533 52 5 4523 5053 41525639 41526168 0.000000e+00 664.0
18 TraesCS7D01G371600 chr6B 88.743 533 54 6 4522 5053 476130110 476130637 0.000000e+00 647.0
19 TraesCS7D01G371600 chr6A 90.940 298 23 4 4522 4817 49204724 49205019 1.020000e-106 398.0
20 TraesCS7D01G371600 chr6A 93.724 239 15 0 4815 5053 49213805 49214043 4.810000e-95 359.0
21 TraesCS7D01G371600 chr3D 100.000 45 0 0 3148 3192 64483357 64483313 3.240000e-12 84.2
22 TraesCS7D01G371600 chr3D 97.778 45 1 0 3149 3193 403700669 403700713 1.510000e-10 78.7
23 TraesCS7D01G371600 chr5B 95.918 49 2 0 3144 3192 322860190 322860142 4.190000e-11 80.5
24 TraesCS7D01G371600 chr5D 94.000 50 3 0 3144 3193 420277232 420277183 5.420000e-10 76.8
25 TraesCS7D01G371600 chr5A 94.000 50 3 0 3144 3193 533944290 533944241 5.420000e-10 76.8
26 TraesCS7D01G371600 chr2B 95.349 43 2 0 3151 3193 4983680 4983638 9.080000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G371600 chr7D 480397310 480402362 5052 False 9332.000000 9332 100.0000 1 5053 1 chr7D.!!$F1 5052
1 TraesCS7D01G371600 chr7D 153168980 153169507 527 True 684.000000 684 90.0560 4523 5052 1 chr7D.!!$R1 529
2 TraesCS7D01G371600 chr7B 506371409 506376344 4935 False 1345.500000 2902 92.2755 3 4504 4 chr7B.!!$F1 4501
3 TraesCS7D01G371600 chr7A 514722374 514726045 3671 True 1151.333333 2106 91.3610 534 4318 3 chr7A.!!$R2 3784
4 TraesCS7D01G371600 chr7A 533564031 533564559 528 True 732.000000 732 91.5730 4521 5053 1 chr7A.!!$R1 532
5 TraesCS7D01G371600 chr1D 402336759 402337289 530 True 876.000000 876 96.4290 4523 5053 1 chr1D.!!$R1 530
6 TraesCS7D01G371600 chr6D 453730575 453731105 530 True 865.000000 865 96.0530 4523 5053 1 chr6D.!!$R1 530
7 TraesCS7D01G371600 chr6B 697838407 697838934 527 True 745.000000 745 92.1050 4523 5053 1 chr6B.!!$R1 530
8 TraesCS7D01G371600 chr6B 7761432 7761962 530 False 673.000000 673 89.5330 4521 5053 1 chr6B.!!$F1 532
9 TraesCS7D01G371600 chr6B 41525639 41526168 529 False 664.000000 664 89.3060 4523 5053 1 chr6B.!!$F2 530
10 TraesCS7D01G371600 chr6B 476130110 476130637 527 False 647.000000 647 88.7430 4522 5053 1 chr6B.!!$F3 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 902 0.110373 GAACACCACGGCGTCATTTC 60.110 55.0 10.85 7.0 0.00 2.17 F
1561 1734 0.110486 GTGTGTGAGTGTGGGGGAAT 59.890 55.0 0.00 0.0 0.00 3.01 F
2105 2303 0.837691 TCACTGACAGGTGCAGGGAT 60.838 55.0 7.51 0.0 40.66 3.85 F
3392 3863 0.179073 CATTCCTCGTCAAGGCGGAT 60.179 55.0 0.00 0.0 45.78 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2303 0.178767 CCCATGGAAGAGATCGCACA 59.821 55.0 15.22 0.0 0.00 4.57 R
3004 3464 0.036388 AATGACACACCGGTAGCTGG 60.036 55.0 6.87 0.0 35.68 4.85 R
3521 3992 0.899720 CCAGGTACACCGCCTTCTTA 59.100 55.0 0.00 0.0 42.08 2.10 R
4395 5248 0.034896 GAGAAACTCTGGCAACCCGA 59.965 55.0 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.174389 ATGCACGTTTGGCACACAAA 59.826 45.000 4.48 0.00 45.23 2.83
63 64 3.800188 TGGTGCTCCATACCACGT 58.200 55.556 2.64 0.00 43.00 4.49
69 70 1.068588 TGCTCCATACCACGTATCTGC 59.931 52.381 0.00 0.00 0.00 4.26
101 102 1.725625 CGTGCACGACAATGCCAAC 60.726 57.895 34.93 0.00 45.50 3.77
115 116 2.927004 CCAACTGTGGTGCATACGT 58.073 52.632 0.00 0.00 40.42 3.57
131 132 5.645929 TGCATACGTCATAATGGTGAAGTTT 59.354 36.000 0.00 0.00 40.46 2.66
174 175 3.953542 GGACTCCCCTTGACCATAAAT 57.046 47.619 0.00 0.00 0.00 1.40
175 176 4.251103 GGACTCCCCTTGACCATAAATT 57.749 45.455 0.00 0.00 0.00 1.82
191 193 2.693267 AATTTGTCGGTCTAGGGCTC 57.307 50.000 0.00 0.00 0.00 4.70
228 230 1.790623 ACACTCGATTCCGTTTTGTCG 59.209 47.619 0.00 0.00 37.05 4.35
241 243 3.121445 CGTTTTGTCGAGAGGAAAGTAGC 59.879 47.826 0.00 0.00 0.00 3.58
244 246 0.810016 GTCGAGAGGAAAGTAGCCGT 59.190 55.000 0.00 0.00 0.00 5.68
245 247 1.201880 GTCGAGAGGAAAGTAGCCGTT 59.798 52.381 0.00 0.00 0.00 4.44
249 251 3.066342 CGAGAGGAAAGTAGCCGTTATCA 59.934 47.826 0.00 0.00 0.00 2.15
272 274 4.959596 TCTAGTTGTCCATAGTGACGTC 57.040 45.455 9.11 9.11 38.11 4.34
295 297 1.164411 CGCATTGCCTCCTTGTGTTA 58.836 50.000 2.41 0.00 0.00 2.41
303 305 3.139077 GCCTCCTTGTGTTATATTCCGG 58.861 50.000 0.00 0.00 0.00 5.14
309 311 6.059484 TCCTTGTGTTATATTCCGGGATTTC 58.941 40.000 0.00 0.00 0.00 2.17
320 322 1.996086 GGGATTTCCGGACTCCCAA 59.004 57.895 32.89 15.59 46.70 4.12
326 328 3.518992 TTTCCGGACTCCCAATTTCTT 57.481 42.857 1.83 0.00 0.00 2.52
327 329 2.489938 TCCGGACTCCCAATTTCTTG 57.510 50.000 0.00 0.00 0.00 3.02
330 332 3.328343 TCCGGACTCCCAATTTCTTGTAA 59.672 43.478 0.00 0.00 0.00 2.41
338 340 9.449719 GACTCCCAATTTCTTGTAATTTCTCTA 57.550 33.333 0.00 0.00 0.00 2.43
341 343 8.726988 TCCCAATTTCTTGTAATTTCTCTAACG 58.273 33.333 0.00 0.00 0.00 3.18
350 352 9.408069 CTTGTAATTTCTCTAACGTAGTCTTGT 57.592 33.333 0.00 0.00 45.00 3.16
360 362 3.022406 ACGTAGTCTTGTCTATGACCCC 58.978 50.000 0.00 0.00 29.74 4.95
361 363 3.288964 CGTAGTCTTGTCTATGACCCCT 58.711 50.000 0.00 0.00 32.86 4.79
362 364 3.700038 CGTAGTCTTGTCTATGACCCCTT 59.300 47.826 0.00 0.00 32.86 3.95
363 365 4.202030 CGTAGTCTTGTCTATGACCCCTTC 60.202 50.000 0.00 0.00 32.86 3.46
364 366 3.108376 AGTCTTGTCTATGACCCCTTCC 58.892 50.000 0.00 0.00 32.86 3.46
365 367 2.838202 GTCTTGTCTATGACCCCTTCCA 59.162 50.000 0.00 0.00 0.00 3.53
366 368 2.838202 TCTTGTCTATGACCCCTTCCAC 59.162 50.000 0.00 0.00 0.00 4.02
367 369 2.642171 TGTCTATGACCCCTTCCACT 57.358 50.000 0.00 0.00 0.00 4.00
368 370 3.769189 TGTCTATGACCCCTTCCACTA 57.231 47.619 0.00 0.00 0.00 2.74
369 371 3.643237 TGTCTATGACCCCTTCCACTAG 58.357 50.000 0.00 0.00 0.00 2.57
370 372 3.012502 TGTCTATGACCCCTTCCACTAGT 59.987 47.826 0.00 0.00 0.00 2.57
371 373 4.231195 TGTCTATGACCCCTTCCACTAGTA 59.769 45.833 0.00 0.00 0.00 1.82
372 374 4.828387 GTCTATGACCCCTTCCACTAGTAG 59.172 50.000 0.00 0.00 0.00 2.57
373 375 2.544844 TGACCCCTTCCACTAGTAGG 57.455 55.000 1.45 0.00 0.00 3.18
374 376 1.007963 TGACCCCTTCCACTAGTAGGG 59.992 57.143 19.00 19.00 46.83 3.53
375 377 1.099456 ACCCCTTCCACTAGTAGGGT 58.901 55.000 22.53 17.15 46.01 4.34
376 378 1.273666 ACCCCTTCCACTAGTAGGGTG 60.274 57.143 22.53 17.23 46.06 4.61
377 379 1.273666 CCCCTTCCACTAGTAGGGTGT 60.274 57.143 22.53 0.00 46.01 4.16
378 380 2.023695 CCCCTTCCACTAGTAGGGTGTA 60.024 54.545 22.53 0.00 46.01 2.90
379 381 3.567219 CCCCTTCCACTAGTAGGGTGTAA 60.567 52.174 22.53 5.99 46.01 2.41
380 382 3.705072 CCCTTCCACTAGTAGGGTGTAAG 59.295 52.174 18.02 10.51 43.07 2.34
381 383 3.705072 CCTTCCACTAGTAGGGTGTAAGG 59.295 52.174 9.74 9.74 41.74 2.69
382 384 4.571362 CCTTCCACTAGTAGGGTGTAAGGA 60.571 50.000 15.55 6.32 46.68 3.36
383 385 4.246712 TCCACTAGTAGGGTGTAAGGAG 57.753 50.000 1.45 0.00 33.31 3.69
384 386 3.595138 TCCACTAGTAGGGTGTAAGGAGT 59.405 47.826 1.45 0.00 33.31 3.85
385 387 4.045079 TCCACTAGTAGGGTGTAAGGAGTT 59.955 45.833 1.45 0.00 33.31 3.01
386 388 4.776308 CCACTAGTAGGGTGTAAGGAGTTT 59.224 45.833 1.45 0.00 33.31 2.66
387 389 5.954150 CCACTAGTAGGGTGTAAGGAGTTTA 59.046 44.000 1.45 0.00 33.31 2.01
388 390 6.096564 CCACTAGTAGGGTGTAAGGAGTTTAG 59.903 46.154 1.45 0.00 33.31 1.85
389 391 6.662663 CACTAGTAGGGTGTAAGGAGTTTAGT 59.337 42.308 1.45 0.00 0.00 2.24
390 392 7.831193 CACTAGTAGGGTGTAAGGAGTTTAGTA 59.169 40.741 1.45 0.00 0.00 1.82
391 393 8.394040 ACTAGTAGGGTGTAAGGAGTTTAGTAA 58.606 37.037 1.45 0.00 0.00 2.24
392 394 7.715266 AGTAGGGTGTAAGGAGTTTAGTAAG 57.285 40.000 0.00 0.00 0.00 2.34
393 395 7.473593 AGTAGGGTGTAAGGAGTTTAGTAAGA 58.526 38.462 0.00 0.00 0.00 2.10
394 396 8.121185 AGTAGGGTGTAAGGAGTTTAGTAAGAT 58.879 37.037 0.00 0.00 0.00 2.40
395 397 7.809880 AGGGTGTAAGGAGTTTAGTAAGATT 57.190 36.000 0.00 0.00 0.00 2.40
396 398 8.215954 AGGGTGTAAGGAGTTTAGTAAGATTT 57.784 34.615 0.00 0.00 0.00 2.17
397 399 8.666821 AGGGTGTAAGGAGTTTAGTAAGATTTT 58.333 33.333 0.00 0.00 0.00 1.82
398 400 9.948964 GGGTGTAAGGAGTTTAGTAAGATTTTA 57.051 33.333 0.00 0.00 0.00 1.52
413 415 5.779241 AGATTTTATCTCAAGTGGACCCA 57.221 39.130 0.00 0.00 33.42 4.51
417 419 6.834168 TTTTATCTCAAGTGGACCCATTTC 57.166 37.500 0.00 0.00 0.00 2.17
428 430 2.622977 GGACCCATTTCCATTAGTGGCA 60.623 50.000 0.00 0.00 45.63 4.92
430 432 1.405105 CCCATTTCCATTAGTGGCACG 59.595 52.381 12.71 0.00 45.63 5.34
436 438 2.422597 TCCATTAGTGGCACGTTCAAG 58.577 47.619 12.71 1.16 45.63 3.02
442 444 3.402628 AGTGGCACGTTCAAGAGTATT 57.597 42.857 12.71 0.00 0.00 1.89
466 468 3.201290 AGTCAGTGAGTTGCTTGTCAAG 58.799 45.455 8.31 8.31 34.91 3.02
495 497 5.935206 AGAACCGGCAAAAAGAAAAGAAAAA 59.065 32.000 0.00 0.00 0.00 1.94
520 649 6.407202 AGAACTTGTCAAGTATGGGATGTAC 58.593 40.000 18.45 0.00 41.91 2.90
546 676 2.335316 AACCCTACACTTGTTCGCAA 57.665 45.000 0.00 0.00 35.53 4.85
547 677 2.561478 ACCCTACACTTGTTCGCAAT 57.439 45.000 0.00 0.00 36.39 3.56
548 678 2.151202 ACCCTACACTTGTTCGCAATG 58.849 47.619 0.00 0.00 36.39 2.82
549 679 1.135689 CCCTACACTTGTTCGCAATGC 60.136 52.381 0.00 0.00 36.39 3.56
551 681 2.413239 CCTACACTTGTTCGCAATGCTG 60.413 50.000 2.94 0.00 36.39 4.41
552 682 1.308047 ACACTTGTTCGCAATGCTGA 58.692 45.000 2.94 0.00 36.39 4.26
567 697 6.584056 GCAATGCTGATTGTTTTTCTTGTAC 58.416 36.000 0.00 0.00 41.09 2.90
568 698 6.421801 GCAATGCTGATTGTTTTTCTTGTACT 59.578 34.615 0.00 0.00 41.09 2.73
569 699 7.568134 GCAATGCTGATTGTTTTTCTTGTACTG 60.568 37.037 0.00 0.00 41.09 2.74
570 700 6.449635 TGCTGATTGTTTTTCTTGTACTGT 57.550 33.333 0.00 0.00 0.00 3.55
571 701 7.561021 TGCTGATTGTTTTTCTTGTACTGTA 57.439 32.000 0.00 0.00 0.00 2.74
572 702 7.414436 TGCTGATTGTTTTTCTTGTACTGTAC 58.586 34.615 10.98 10.98 0.00 2.90
573 703 7.282224 TGCTGATTGTTTTTCTTGTACTGTACT 59.718 33.333 17.98 0.00 0.00 2.73
574 704 8.770828 GCTGATTGTTTTTCTTGTACTGTACTA 58.229 33.333 17.98 10.30 0.00 1.82
613 743 5.394115 CCCCGGATAGAAAGGAAAACAAATG 60.394 44.000 0.73 0.00 0.00 2.32
621 751 7.486407 AGAAAGGAAAACAAATGGCATAGAT 57.514 32.000 0.00 0.00 0.00 1.98
634 764 5.435686 TGGCATAGATACAAGTGGAAAGT 57.564 39.130 0.00 0.00 0.00 2.66
670 800 1.221021 GGAGGGCCTCTACAAACGG 59.779 63.158 31.39 0.00 0.00 4.44
674 804 3.574780 GCCTCTACAAACGGCCAC 58.425 61.111 2.24 0.00 37.86 5.01
772 902 0.110373 GAACACCACGGCGTCATTTC 60.110 55.000 10.85 7.00 0.00 2.17
773 903 0.816018 AACACCACGGCGTCATTTCA 60.816 50.000 10.85 0.00 0.00 2.69
1069 1219 4.711949 CGGCCCTGAAGCTGCTGT 62.712 66.667 1.35 0.00 31.10 4.40
1071 1221 1.002134 GGCCCTGAAGCTGCTGTTA 60.002 57.895 1.35 0.00 0.00 2.41
1364 1521 0.761187 CGACAGATGGATGGATGGGT 59.239 55.000 0.00 0.00 0.00 4.51
1430 1587 8.466798 ACAATTAATTCTGGGTTTAGCATGTAC 58.533 33.333 0.00 0.00 0.00 2.90
1431 1588 8.686334 CAATTAATTCTGGGTTTAGCATGTACT 58.314 33.333 0.00 0.00 0.00 2.73
1472 1629 3.149196 CGGATATGCAGCATAAAAGGGT 58.851 45.455 19.12 1.25 29.74 4.34
1473 1630 4.041075 TCGGATATGCAGCATAAAAGGGTA 59.959 41.667 19.12 0.00 29.74 3.69
1517 1680 2.479566 TCAGTTGATTGGAGCTGGAC 57.520 50.000 0.00 0.00 0.00 4.02
1557 1730 1.468985 TTTTGTGTGTGAGTGTGGGG 58.531 50.000 0.00 0.00 0.00 4.96
1558 1731 0.395036 TTTGTGTGTGAGTGTGGGGG 60.395 55.000 0.00 0.00 0.00 5.40
1559 1732 1.275421 TTGTGTGTGAGTGTGGGGGA 61.275 55.000 0.00 0.00 0.00 4.81
1560 1733 1.275421 TGTGTGTGAGTGTGGGGGAA 61.275 55.000 0.00 0.00 0.00 3.97
1561 1734 0.110486 GTGTGTGAGTGTGGGGGAAT 59.890 55.000 0.00 0.00 0.00 3.01
1568 1741 1.676006 GAGTGTGGGGGAATATTTGCG 59.324 52.381 0.00 0.00 0.00 4.85
1587 1760 2.076863 CGTTTTCCAGTGAGGGATGAC 58.923 52.381 0.00 0.00 36.67 3.06
1603 1782 4.337555 GGGATGACTTGAATCTCCAATGTG 59.662 45.833 0.00 0.00 0.00 3.21
1728 1913 3.754188 CAGAAAGTTCTGCAGTATGGC 57.246 47.619 14.67 0.50 46.97 4.40
1880 2069 1.063649 CTTGATCTGCGGCATGTGC 59.936 57.895 1.75 5.27 41.14 4.57
2021 2218 2.032178 GTGTTGCCTTCAGAACAGTGTC 59.968 50.000 0.00 0.00 32.81 3.67
2022 2219 2.288666 GTTGCCTTCAGAACAGTGTCA 58.711 47.619 0.00 0.00 0.00 3.58
2089 2287 6.695713 GGTAATGGTGTTCTCTTGTTTTTCAC 59.304 38.462 0.00 0.00 0.00 3.18
2105 2303 0.837691 TCACTGACAGGTGCAGGGAT 60.838 55.000 7.51 0.00 40.66 3.85
2109 2307 2.034687 ACAGGTGCAGGGATGTGC 59.965 61.111 0.00 0.00 44.27 4.57
2205 2403 4.152647 AGACTCCACAGAACTGTATGTCA 58.847 43.478 22.34 4.74 42.83 3.58
2250 2448 2.642311 TCTGTACTGGAAATGGAAGCCA 59.358 45.455 0.00 0.00 38.19 4.75
2407 2605 5.461032 TCCATGGAATTTTAAAGCGTGTT 57.539 34.783 13.46 0.00 0.00 3.32
2408 2606 5.465935 TCCATGGAATTTTAAAGCGTGTTC 58.534 37.500 13.46 0.00 0.00 3.18
2414 2623 7.262048 TGGAATTTTAAAGCGTGTTCTTCTTT 58.738 30.769 0.00 0.00 34.74 2.52
2420 2629 9.575783 TTTTAAAGCGTGTTCTTCTTTGTATTT 57.424 25.926 0.00 0.00 32.85 1.40
2428 2637 4.419522 TCTTCTTTGTATTTTGCGCCTC 57.580 40.909 4.18 0.00 0.00 4.70
2513 2811 6.435428 AGCATTTGTTTAAGTAGGTGTTTCG 58.565 36.000 0.00 0.00 0.00 3.46
2517 2815 5.159399 TGTTTAAGTAGGTGTTTCGTTGC 57.841 39.130 0.00 0.00 0.00 4.17
2518 2816 4.035441 TGTTTAAGTAGGTGTTTCGTTGCC 59.965 41.667 0.00 0.00 0.00 4.52
2522 2820 1.225376 TAGGTGTTTCGTTGCCGCAG 61.225 55.000 0.00 0.00 0.00 5.18
2541 2839 4.090354 CGCAGAATTTGTTTTAGGCATGTG 59.910 41.667 0.00 0.00 0.00 3.21
2558 2856 5.063564 GGCATGTGTCAAGCTTTAGTAGTAC 59.936 44.000 0.00 0.00 0.00 2.73
2586 2884 9.093970 CATAACTAACTGTATCATTCCGACAAA 57.906 33.333 0.00 0.00 0.00 2.83
2639 2939 6.726764 AGAACTAGAGAAGGATACAAAGTGGT 59.273 38.462 0.00 0.00 41.41 4.16
2700 3001 9.236006 AGATGAATAGTTTGCAGTTTCATTACT 57.764 29.630 10.79 0.00 37.20 2.24
2701 3002 9.846248 GATGAATAGTTTGCAGTTTCATTACTT 57.154 29.630 10.79 0.00 37.20 2.24
2704 3005 9.129209 GAATAGTTTGCAGTTTCATTACTTTCC 57.871 33.333 0.00 0.00 0.00 3.13
2710 3011 5.086727 GCAGTTTCATTACTTTCCGTTAGC 58.913 41.667 0.00 0.00 0.00 3.09
2711 3012 5.334569 GCAGTTTCATTACTTTCCGTTAGCA 60.335 40.000 0.00 0.00 0.00 3.49
2718 3019 1.144298 ACTTTCCGTTAGCAAAGGGGT 59.856 47.619 0.00 0.00 40.40 4.95
2724 3025 2.169769 CCGTTAGCAAAGGGGTATCAGA 59.830 50.000 0.00 0.00 37.06 3.27
2826 3128 2.034879 CGCTGCAACTTCGATGGGT 61.035 57.895 0.00 0.00 0.00 4.51
2876 3180 1.795768 TCAGACATTCGACCTTGTGC 58.204 50.000 0.00 0.00 0.00 4.57
2877 3181 1.069978 TCAGACATTCGACCTTGTGCA 59.930 47.619 0.00 0.00 0.00 4.57
2881 3185 3.569701 AGACATTCGACCTTGTGCATTTT 59.430 39.130 0.00 0.00 0.00 1.82
2882 3186 4.037923 AGACATTCGACCTTGTGCATTTTT 59.962 37.500 0.00 0.00 0.00 1.94
2925 3385 9.850198 TGATAAAAATCCACTGATGATATGTCA 57.150 29.630 0.00 0.00 39.04 3.58
2931 3391 7.756395 ATCCACTGATGATATGTCAAAATCC 57.244 36.000 0.00 0.00 38.01 3.01
2932 3392 5.759763 TCCACTGATGATATGTCAAAATCCG 59.240 40.000 0.00 0.00 38.01 4.18
2933 3393 5.049198 CCACTGATGATATGTCAAAATCCGG 60.049 44.000 0.00 0.00 38.01 5.14
2934 3394 5.759763 CACTGATGATATGTCAAAATCCGGA 59.240 40.000 6.61 6.61 38.01 5.14
2935 3395 5.994054 ACTGATGATATGTCAAAATCCGGAG 59.006 40.000 11.34 0.00 38.01 4.63
2936 3396 5.308014 TGATGATATGTCAAAATCCGGAGG 58.692 41.667 11.34 0.00 44.33 4.30
2937 3397 5.163205 TGATGATATGTCAAAATCCGGAGGT 60.163 40.000 11.34 0.00 43.66 3.85
2938 3398 6.042666 TGATGATATGTCAAAATCCGGAGGTA 59.957 38.462 11.34 0.00 43.66 3.08
2939 3399 6.837312 ATGATATGTCAAAATCCGGAGGTAA 58.163 36.000 11.34 0.00 43.66 2.85
2940 3400 6.710744 ATGATATGTCAAAATCCGGAGGTAAC 59.289 38.462 11.34 5.07 43.66 2.50
2941 3401 7.637078 ATGATATGTCAAAATCCGGAGGTAACA 60.637 37.037 11.34 10.90 43.66 2.41
2977 3437 8.517062 AGGTAATTCTGAAGAATCTTTGATGG 57.483 34.615 6.03 0.00 43.41 3.51
2979 3439 9.129532 GGTAATTCTGAAGAATCTTTGATGGAT 57.870 33.333 6.03 0.00 43.41 3.41
2996 3456 7.750229 TGATGGATTATATTCTTGTTGAGGC 57.250 36.000 0.00 0.00 0.00 4.70
2997 3457 6.716628 TGATGGATTATATTCTTGTTGAGGCC 59.283 38.462 0.00 0.00 0.00 5.19
3001 3461 6.431234 GGATTATATTCTTGTTGAGGCCGATT 59.569 38.462 0.00 0.00 0.00 3.34
3003 3463 0.881118 TTCTTGTTGAGGCCGATTGC 59.119 50.000 0.00 0.00 40.16 3.56
3014 3474 2.588877 CGATTGCCCAGCTACCGG 60.589 66.667 0.00 0.00 0.00 5.28
3021 3481 2.579657 CCCAGCTACCGGTGTGTCA 61.580 63.158 19.93 0.00 36.93 3.58
3028 3488 3.749609 AGCTACCGGTGTGTCATTTTAAC 59.250 43.478 19.93 0.00 0.00 2.01
3065 3528 8.558973 ACTCTAGTTTCTGAAATCCATCTTTG 57.441 34.615 6.06 0.00 0.00 2.77
3067 3530 5.397142 AGTTTCTGAAATCCATCTTTGCC 57.603 39.130 6.06 0.00 0.00 4.52
3068 3531 4.221482 AGTTTCTGAAATCCATCTTTGCCC 59.779 41.667 6.06 0.00 0.00 5.36
3074 3537 2.925966 ATCCATCTTTGCCCTTTCCA 57.074 45.000 0.00 0.00 0.00 3.53
3087 3550 4.021192 TGCCCTTTCCAACATTCAGATTTC 60.021 41.667 0.00 0.00 0.00 2.17
3097 3560 6.151648 CCAACATTCAGATTTCTGTGGTACAT 59.848 38.462 7.42 0.00 44.52 2.29
3110 3573 6.288294 TCTGTGGTACATTATTCTGTATGGC 58.712 40.000 0.00 0.00 44.52 4.40
3111 3574 5.995446 TGTGGTACATTATTCTGTATGGCA 58.005 37.500 0.00 0.00 44.52 4.92
3112 3575 6.600388 TGTGGTACATTATTCTGTATGGCAT 58.400 36.000 4.88 4.88 44.52 4.40
3113 3576 6.486320 TGTGGTACATTATTCTGTATGGCATG 59.514 38.462 10.98 0.00 44.52 4.06
3114 3577 6.486657 GTGGTACATTATTCTGTATGGCATGT 59.513 38.462 10.98 0.00 44.52 3.21
3115 3578 7.659799 GTGGTACATTATTCTGTATGGCATGTA 59.340 37.037 10.98 0.00 44.52 2.29
3116 3579 7.877612 TGGTACATTATTCTGTATGGCATGTAG 59.122 37.037 10.98 8.29 34.33 2.74
3117 3580 7.878127 GGTACATTATTCTGTATGGCATGTAGT 59.122 37.037 10.98 0.00 34.33 2.73
3118 3581 9.273016 GTACATTATTCTGTATGGCATGTAGTT 57.727 33.333 10.98 3.85 34.33 2.24
3129 3592 4.976864 TGGCATGTAGTTGATGCTATCAT 58.023 39.130 0.00 0.00 44.75 2.45
3131 3594 5.829391 TGGCATGTAGTTGATGCTATCATTT 59.171 36.000 0.00 0.00 44.75 2.32
3152 3615 3.976169 TGTGCTTGGCTGAATTTTGTAC 58.024 40.909 0.00 0.00 0.00 2.90
3153 3616 3.636300 TGTGCTTGGCTGAATTTTGTACT 59.364 39.130 0.00 0.00 0.00 2.73
3154 3617 4.229876 GTGCTTGGCTGAATTTTGTACTC 58.770 43.478 0.00 0.00 0.00 2.59
3155 3618 3.255642 TGCTTGGCTGAATTTTGTACTCC 59.744 43.478 0.00 0.00 0.00 3.85
3156 3619 3.367395 GCTTGGCTGAATTTTGTACTCCC 60.367 47.826 0.00 0.00 0.00 4.30
3157 3620 3.806949 TGGCTGAATTTTGTACTCCCT 57.193 42.857 0.00 0.00 0.00 4.20
3158 3621 4.112634 TGGCTGAATTTTGTACTCCCTT 57.887 40.909 0.00 0.00 0.00 3.95
3159 3622 4.079253 TGGCTGAATTTTGTACTCCCTTC 58.921 43.478 0.00 0.00 0.00 3.46
3160 3623 3.127030 GGCTGAATTTTGTACTCCCTTCG 59.873 47.826 0.00 0.00 0.00 3.79
3161 3624 3.751698 GCTGAATTTTGTACTCCCTTCGT 59.248 43.478 0.00 0.00 0.00 3.85
3162 3625 4.142881 GCTGAATTTTGTACTCCCTTCGTC 60.143 45.833 0.00 0.00 0.00 4.20
3163 3626 4.320870 TGAATTTTGTACTCCCTTCGTCC 58.679 43.478 0.00 0.00 0.00 4.79
3164 3627 2.845363 TTTTGTACTCCCTTCGTCCC 57.155 50.000 0.00 0.00 0.00 4.46
3165 3628 1.719529 TTTGTACTCCCTTCGTCCCA 58.280 50.000 0.00 0.00 0.00 4.37
3166 3629 1.719529 TTGTACTCCCTTCGTCCCAA 58.280 50.000 0.00 0.00 0.00 4.12
3167 3630 1.719529 TGTACTCCCTTCGTCCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
3168 3631 2.048601 TGTACTCCCTTCGTCCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3169 3632 2.640826 TGTACTCCCTTCGTCCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3170 3633 3.839490 TGTACTCCCTTCGTCCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3171 3634 4.286549 TGTACTCCCTTCGTCCCAAAATAA 59.713 41.667 0.00 0.00 0.00 1.40
3172 3635 3.951663 ACTCCCTTCGTCCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
3173 3636 3.329814 ACTCCCTTCGTCCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
3174 3637 3.681593 TCCCTTCGTCCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
3175 3638 3.073356 TCCCTTCGTCCCAAAATAAGTGT 59.927 43.478 0.00 0.00 0.00 3.55
3176 3639 3.439129 CCCTTCGTCCCAAAATAAGTGTC 59.561 47.826 0.00 0.00 0.00 3.67
3177 3640 3.124636 CCTTCGTCCCAAAATAAGTGTCG 59.875 47.826 0.00 0.00 0.00 4.35
3178 3641 2.070783 TCGTCCCAAAATAAGTGTCGC 58.929 47.619 0.00 0.00 0.00 5.19
3179 3642 2.073816 CGTCCCAAAATAAGTGTCGCT 58.926 47.619 0.00 0.00 0.00 4.93
3180 3643 2.159707 CGTCCCAAAATAAGTGTCGCTG 60.160 50.000 0.00 0.00 0.00 5.18
3181 3644 3.071479 GTCCCAAAATAAGTGTCGCTGA 58.929 45.455 0.00 0.00 0.00 4.26
3182 3645 3.689649 GTCCCAAAATAAGTGTCGCTGAT 59.310 43.478 0.00 0.00 0.00 2.90
3183 3646 4.156008 GTCCCAAAATAAGTGTCGCTGATT 59.844 41.667 0.00 0.00 29.37 2.57
3184 3647 4.764823 TCCCAAAATAAGTGTCGCTGATTT 59.235 37.500 3.21 3.21 39.41 2.17
3185 3648 5.941058 TCCCAAAATAAGTGTCGCTGATTTA 59.059 36.000 8.84 0.00 37.29 1.40
3186 3649 6.093495 TCCCAAAATAAGTGTCGCTGATTTAG 59.907 38.462 8.84 4.74 37.29 1.85
3187 3650 6.128007 CCCAAAATAAGTGTCGCTGATTTAGT 60.128 38.462 8.84 0.00 37.29 2.24
3188 3651 7.065324 CCCAAAATAAGTGTCGCTGATTTAGTA 59.935 37.037 8.84 0.00 37.29 1.82
3189 3652 7.903431 CCAAAATAAGTGTCGCTGATTTAGTAC 59.097 37.037 8.84 0.00 37.29 2.73
3190 3653 8.440059 CAAAATAAGTGTCGCTGATTTAGTACA 58.560 33.333 8.84 0.00 37.29 2.90
3191 3654 8.542497 AAATAAGTGTCGCTGATTTAGTACAA 57.458 30.769 6.91 0.00 36.68 2.41
3192 3655 5.840940 AAGTGTCGCTGATTTAGTACAAC 57.159 39.130 0.00 0.00 0.00 3.32
3193 3656 4.243270 AGTGTCGCTGATTTAGTACAACC 58.757 43.478 0.00 0.00 0.00 3.77
3194 3657 3.060363 GTGTCGCTGATTTAGTACAACCG 59.940 47.826 0.00 0.00 0.00 4.44
3195 3658 3.057386 TGTCGCTGATTTAGTACAACCGA 60.057 43.478 0.00 0.00 0.00 4.69
3196 3659 3.546670 GTCGCTGATTTAGTACAACCGAG 59.453 47.826 0.00 0.00 0.00 4.63
3197 3660 2.858344 CGCTGATTTAGTACAACCGAGG 59.142 50.000 0.00 0.00 0.00 4.63
3198 3661 3.195661 GCTGATTTAGTACAACCGAGGG 58.804 50.000 0.00 0.00 0.00 4.30
3199 3662 3.118884 GCTGATTTAGTACAACCGAGGGA 60.119 47.826 0.00 0.00 0.00 4.20
3200 3663 4.683832 CTGATTTAGTACAACCGAGGGAG 58.316 47.826 0.00 0.00 0.00 4.30
3201 3664 4.091549 TGATTTAGTACAACCGAGGGAGT 58.908 43.478 0.00 0.00 0.00 3.85
3202 3665 5.263599 TGATTTAGTACAACCGAGGGAGTA 58.736 41.667 0.00 0.00 0.00 2.59
3245 3708 5.011329 TCAGAAGCCAAAAATCTTTCAGCAT 59.989 36.000 0.00 0.00 0.00 3.79
3250 3713 6.704310 AGCCAAAAATCTTTCAGCATGTAAT 58.296 32.000 0.00 0.00 37.40 1.89
3371 3842 2.930019 CTCTCCCTGGTGTGGGCA 60.930 66.667 0.00 0.00 46.67 5.36
3392 3863 0.179073 CATTCCTCGTCAAGGCGGAT 60.179 55.000 0.00 0.00 45.78 4.18
3393 3864 0.179073 ATTCCTCGTCAAGGCGGATG 60.179 55.000 0.00 0.00 45.78 3.51
3449 3920 2.805353 CGGCTGACCTTCGACGTG 60.805 66.667 0.00 0.00 0.00 4.49
3521 3992 1.228154 GACGGGGCAGTGGTTCTTT 60.228 57.895 0.00 0.00 0.00 2.52
3587 4058 1.078567 CTGCCAGGACAAGAGCCTC 60.079 63.158 0.00 0.00 32.12 4.70
3651 4122 1.079405 GCCTTCCGGTTCATCACGA 60.079 57.895 0.00 0.00 0.00 4.35
3653 4124 0.037697 CCTTCCGGTTCATCACGACA 60.038 55.000 0.00 0.00 0.00 4.35
3659 4130 0.739462 GGTTCATCACGACATCGGCA 60.739 55.000 6.21 0.00 44.95 5.69
3692 4163 1.342174 GTGTTCTACCGGACTTGGTCA 59.658 52.381 9.46 0.00 42.62 4.02
4054 4537 4.154347 GCTGGGCGAGGACTGAGG 62.154 72.222 0.00 0.00 0.00 3.86
4055 4538 2.363018 CTGGGCGAGGACTGAGGA 60.363 66.667 0.00 0.00 0.00 3.71
4063 4546 4.500116 GGACTGAGGACTCGCCGC 62.500 72.222 0.00 0.00 43.43 6.53
4159 4642 2.863484 AGGGGTTCATGGTGCCCA 60.863 61.111 17.64 0.00 44.07 5.36
4225 4708 0.808453 AACTGTGTTGTCACCGGTCG 60.808 55.000 2.59 0.00 43.26 4.79
4250 4752 2.023673 TGGTTTGTGCTTGGACTTCAG 58.976 47.619 0.00 0.00 0.00 3.02
4293 4795 7.285172 TGGACATTTTGTAGCAAGCATACATAT 59.715 33.333 0.00 0.00 33.36 1.78
4330 4832 5.106515 GCAAGAAAGAAATCCTACACCTGAC 60.107 44.000 0.00 0.00 0.00 3.51
4331 4833 5.167303 AGAAAGAAATCCTACACCTGACC 57.833 43.478 0.00 0.00 0.00 4.02
4333 4835 4.559862 AAGAAATCCTACACCTGACCTG 57.440 45.455 0.00 0.00 0.00 4.00
4334 4836 3.791320 AGAAATCCTACACCTGACCTGA 58.209 45.455 0.00 0.00 0.00 3.86
4335 4837 3.772025 AGAAATCCTACACCTGACCTGAG 59.228 47.826 0.00 0.00 0.00 3.35
4375 5228 7.769272 AAATGTATAATGCAAAATGGGAACG 57.231 32.000 0.00 0.00 0.00 3.95
4376 5229 6.707440 ATGTATAATGCAAAATGGGAACGA 57.293 33.333 0.00 0.00 0.00 3.85
4377 5230 5.885881 TGTATAATGCAAAATGGGAACGAC 58.114 37.500 0.00 0.00 0.00 4.34
4406 5259 1.178534 ACCATTTGTCGGGTTGCCAG 61.179 55.000 0.00 0.00 32.12 4.85
4409 5262 0.110486 ATTTGTCGGGTTGCCAGAGT 59.890 50.000 0.00 0.00 0.00 3.24
4410 5263 0.106918 TTTGTCGGGTTGCCAGAGTT 60.107 50.000 0.00 0.00 0.00 3.01
4412 5265 0.534203 TGTCGGGTTGCCAGAGTTTC 60.534 55.000 0.00 0.00 0.00 2.78
4476 5329 2.350498 CCCAGTTACATTAGCGAAACCG 59.650 50.000 0.00 0.00 0.00 4.44
4491 5344 1.904287 AACCGCAGCAATCCTTACAA 58.096 45.000 0.00 0.00 0.00 2.41
4504 5357 4.891992 TCCTTACAAGGGAGACAGAAAG 57.108 45.455 8.14 0.00 46.47 2.62
4505 5358 4.489737 TCCTTACAAGGGAGACAGAAAGA 58.510 43.478 8.14 0.00 46.47 2.52
4506 5359 4.905456 TCCTTACAAGGGAGACAGAAAGAA 59.095 41.667 8.14 0.00 46.47 2.52
4507 5360 5.368523 TCCTTACAAGGGAGACAGAAAGAAA 59.631 40.000 8.14 0.00 46.47 2.52
4508 5361 6.062095 CCTTACAAGGGAGACAGAAAGAAAA 58.938 40.000 0.00 0.00 42.66 2.29
4509 5362 6.205658 CCTTACAAGGGAGACAGAAAGAAAAG 59.794 42.308 0.00 0.00 42.66 2.27
4510 5363 5.373812 ACAAGGGAGACAGAAAGAAAAGA 57.626 39.130 0.00 0.00 0.00 2.52
4511 5364 5.755849 ACAAGGGAGACAGAAAGAAAAGAA 58.244 37.500 0.00 0.00 0.00 2.52
4512 5365 6.187682 ACAAGGGAGACAGAAAGAAAAGAAA 58.812 36.000 0.00 0.00 0.00 2.52
4513 5366 6.836007 ACAAGGGAGACAGAAAGAAAAGAAAT 59.164 34.615 0.00 0.00 0.00 2.17
4514 5367 6.890979 AGGGAGACAGAAAGAAAAGAAATG 57.109 37.500 0.00 0.00 0.00 2.32
4515 5368 6.368805 AGGGAGACAGAAAGAAAAGAAATGT 58.631 36.000 0.00 0.00 0.00 2.71
4516 5369 7.518188 AGGGAGACAGAAAGAAAAGAAATGTA 58.482 34.615 0.00 0.00 0.00 2.29
4517 5370 7.998964 AGGGAGACAGAAAGAAAAGAAATGTAA 59.001 33.333 0.00 0.00 0.00 2.41
4518 5371 8.076781 GGGAGACAGAAAGAAAAGAAATGTAAC 58.923 37.037 0.00 0.00 0.00 2.50
4519 5372 8.621286 GGAGACAGAAAGAAAAGAAATGTAACA 58.379 33.333 0.00 0.00 0.00 2.41
4551 5404 2.677003 GCACACCCGATGGTTGTCG 61.677 63.158 0.00 0.00 44.75 4.35
4584 5437 0.320771 AATCAGGTGCGACAGTGGAC 60.321 55.000 0.00 0.00 0.00 4.02
4699 5554 3.445096 ACTACCGAACCTTGTACGCTATT 59.555 43.478 0.00 0.00 0.00 1.73
4757 5613 3.096852 TCAACCAGAGATGGTATGACGT 58.903 45.455 0.00 0.00 42.20 4.34
4786 5642 5.905913 AGCCTTTCTATATGGTAACCAGAGT 59.094 40.000 0.00 0.00 36.75 3.24
4836 5692 1.270550 CGCCATCCACAGAAAAGCTTT 59.729 47.619 5.69 5.69 0.00 3.51
4841 5697 0.385974 CCACAGAAAAGCTTTCGCCG 60.386 55.000 13.10 4.35 36.60 6.46
4931 5787 1.002257 TTCATCCTGTGGCGCATGT 60.002 52.632 10.83 0.00 0.00 3.21
4943 5799 1.224069 GCGCATGTAGATCACGCCAT 61.224 55.000 0.30 0.00 43.58 4.40
4975 5831 1.079336 GGGCTTCTTCGGCTACGTT 60.079 57.895 0.00 0.00 41.85 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.126437 CAAATGCAGATACGTGGTATGGA 58.874 43.478 0.00 0.00 0.00 3.41
55 56 2.878406 GCCAAATGCAGATACGTGGTAT 59.122 45.455 0.00 0.00 40.77 2.73
56 57 2.093181 AGCCAAATGCAGATACGTGGTA 60.093 45.455 0.00 0.00 44.83 3.25
58 59 1.382522 AGCCAAATGCAGATACGTGG 58.617 50.000 0.00 0.00 44.83 4.94
63 64 4.332543 CACGAAACTAGCCAAATGCAGATA 59.667 41.667 0.00 0.00 44.83 1.98
69 70 2.584791 GTGCACGAAACTAGCCAAATG 58.415 47.619 0.00 0.00 0.00 2.32
101 102 3.248363 CCATTATGACGTATGCACCACAG 59.752 47.826 0.00 0.00 0.00 3.66
115 116 4.804108 CGCCAAAAACTTCACCATTATGA 58.196 39.130 0.00 0.00 0.00 2.15
174 175 1.275291 CAAGAGCCCTAGACCGACAAA 59.725 52.381 0.00 0.00 0.00 2.83
175 176 0.895530 CAAGAGCCCTAGACCGACAA 59.104 55.000 0.00 0.00 0.00 3.18
191 193 0.610174 TGTGAGAGTAGCTGGGCAAG 59.390 55.000 0.00 0.00 0.00 4.01
228 230 4.650754 TGATAACGGCTACTTTCCTCTC 57.349 45.455 0.00 0.00 0.00 3.20
230 232 5.602628 AGATTGATAACGGCTACTTTCCTC 58.397 41.667 0.00 0.00 0.00 3.71
241 243 7.382488 CACTATGGACAACTAGATTGATAACGG 59.618 40.741 0.00 0.00 41.23 4.44
244 246 8.135529 CGTCACTATGGACAACTAGATTGATAA 58.864 37.037 0.00 0.00 41.23 1.75
245 247 7.284716 ACGTCACTATGGACAACTAGATTGATA 59.715 37.037 0.00 0.00 41.23 2.15
249 251 5.448768 CGACGTCACTATGGACAACTAGATT 60.449 44.000 17.16 0.00 37.66 2.40
272 274 2.821366 AAGGAGGCAATGCGCTCG 60.821 61.111 9.73 0.00 41.91 5.03
286 288 5.240844 GGAAATCCCGGAATATAACACAAGG 59.759 44.000 0.73 0.00 0.00 3.61
303 305 2.437085 AATTGGGAGTCCGGAAATCC 57.563 50.000 23.23 23.23 35.24 3.01
309 311 2.200373 ACAAGAAATTGGGAGTCCGG 57.800 50.000 2.26 0.00 35.24 5.14
326 328 8.790718 AGACAAGACTACGTTAGAGAAATTACA 58.209 33.333 0.00 0.00 0.00 2.41
330 332 9.175312 TCATAGACAAGACTACGTTAGAGAAAT 57.825 33.333 0.00 0.00 0.00 2.17
338 340 3.446516 GGGGTCATAGACAAGACTACGTT 59.553 47.826 0.00 0.00 33.68 3.99
341 343 4.099727 GGAAGGGGTCATAGACAAGACTAC 59.900 50.000 0.00 0.00 33.68 2.73
343 345 3.108376 GGAAGGGGTCATAGACAAGACT 58.892 50.000 0.00 0.00 33.68 3.24
346 348 2.840651 AGTGGAAGGGGTCATAGACAAG 59.159 50.000 0.00 0.00 33.68 3.16
350 352 4.140994 CCTACTAGTGGAAGGGGTCATAGA 60.141 50.000 7.98 0.00 0.00 1.98
361 363 4.045079 ACTCCTTACACCCTACTAGTGGAA 59.955 45.833 7.98 0.00 39.63 3.53
362 364 3.595138 ACTCCTTACACCCTACTAGTGGA 59.405 47.826 7.98 0.23 39.63 4.02
363 365 3.978610 ACTCCTTACACCCTACTAGTGG 58.021 50.000 5.39 1.52 39.63 4.00
364 366 5.997384 AAACTCCTTACACCCTACTAGTG 57.003 43.478 5.39 0.00 41.15 2.74
365 367 6.798766 ACTAAACTCCTTACACCCTACTAGT 58.201 40.000 0.00 0.00 0.00 2.57
366 368 8.814038 TTACTAAACTCCTTACACCCTACTAG 57.186 38.462 0.00 0.00 0.00 2.57
367 369 8.614814 TCTTACTAAACTCCTTACACCCTACTA 58.385 37.037 0.00 0.00 0.00 1.82
368 370 7.473593 TCTTACTAAACTCCTTACACCCTACT 58.526 38.462 0.00 0.00 0.00 2.57
369 371 7.709149 TCTTACTAAACTCCTTACACCCTAC 57.291 40.000 0.00 0.00 0.00 3.18
370 372 8.906238 AATCTTACTAAACTCCTTACACCCTA 57.094 34.615 0.00 0.00 0.00 3.53
371 373 7.809880 AATCTTACTAAACTCCTTACACCCT 57.190 36.000 0.00 0.00 0.00 4.34
372 374 8.859236 AAAATCTTACTAAACTCCTTACACCC 57.141 34.615 0.00 0.00 0.00 4.61
385 387 9.886132 GGTCCACTTGAGATAAAATCTTACTAA 57.114 33.333 0.00 0.00 40.38 2.24
386 388 8.483758 GGGTCCACTTGAGATAAAATCTTACTA 58.516 37.037 0.00 0.00 40.38 1.82
387 389 7.037586 TGGGTCCACTTGAGATAAAATCTTACT 60.038 37.037 0.00 0.00 40.38 2.24
388 390 7.110155 TGGGTCCACTTGAGATAAAATCTTAC 58.890 38.462 0.00 0.00 40.38 2.34
389 391 7.265599 TGGGTCCACTTGAGATAAAATCTTA 57.734 36.000 0.00 0.00 40.38 2.10
390 392 6.139679 TGGGTCCACTTGAGATAAAATCTT 57.860 37.500 0.00 0.00 40.38 2.40
391 393 5.779241 TGGGTCCACTTGAGATAAAATCT 57.221 39.130 0.00 0.00 43.70 2.40
392 394 7.410120 AAATGGGTCCACTTGAGATAAAATC 57.590 36.000 0.00 0.00 0.00 2.17
393 395 6.381133 GGAAATGGGTCCACTTGAGATAAAAT 59.619 38.462 0.00 0.00 37.65 1.82
394 396 5.714806 GGAAATGGGTCCACTTGAGATAAAA 59.285 40.000 0.00 0.00 37.65 1.52
395 397 5.222233 TGGAAATGGGTCCACTTGAGATAAA 60.222 40.000 0.00 0.00 42.97 1.40
396 398 4.290985 TGGAAATGGGTCCACTTGAGATAA 59.709 41.667 0.00 0.00 42.97 1.75
397 399 3.849574 TGGAAATGGGTCCACTTGAGATA 59.150 43.478 0.00 0.00 42.97 1.98
398 400 2.649312 TGGAAATGGGTCCACTTGAGAT 59.351 45.455 0.00 0.00 42.97 2.75
399 401 2.061848 TGGAAATGGGTCCACTTGAGA 58.938 47.619 0.00 0.00 42.97 3.27
400 402 2.584835 TGGAAATGGGTCCACTTGAG 57.415 50.000 0.00 0.00 42.97 3.02
420 422 2.902705 ACTCTTGAACGTGCCACTAA 57.097 45.000 0.00 0.00 0.00 2.24
422 424 3.402628 AATACTCTTGAACGTGCCACT 57.597 42.857 0.00 0.00 0.00 4.00
428 430 8.277490 TCACTGACTATAATACTCTTGAACGT 57.723 34.615 0.00 0.00 0.00 3.99
436 438 7.976734 ACAAGCAACTCACTGACTATAATACTC 59.023 37.037 0.00 0.00 0.00 2.59
442 444 5.722021 TGACAAGCAACTCACTGACTATA 57.278 39.130 0.00 0.00 0.00 1.31
466 468 1.673920 TCTTTTTGCCGGTTCTCACAC 59.326 47.619 1.90 0.00 0.00 3.82
495 497 5.880901 ACATCCCATACTTGACAAGTTCTT 58.119 37.500 25.10 8.90 42.81 2.52
497 499 5.585047 GGTACATCCCATACTTGACAAGTTC 59.415 44.000 25.10 4.78 42.81 3.01
513 642 1.296002 AGGGTTTCTGGGGTACATCC 58.704 55.000 0.00 0.00 0.00 3.51
520 649 1.423921 ACAAGTGTAGGGTTTCTGGGG 59.576 52.381 0.00 0.00 0.00 4.96
524 653 2.158871 TGCGAACAAGTGTAGGGTTTCT 60.159 45.455 0.00 0.00 0.00 2.52
525 654 2.215196 TGCGAACAAGTGTAGGGTTTC 58.785 47.619 0.00 0.00 0.00 2.78
526 655 2.335316 TGCGAACAAGTGTAGGGTTT 57.665 45.000 0.00 0.00 0.00 3.27
546 676 7.042797 ACAGTACAAGAAAAACAATCAGCAT 57.957 32.000 0.00 0.00 0.00 3.79
547 677 6.449635 ACAGTACAAGAAAAACAATCAGCA 57.550 33.333 0.00 0.00 0.00 4.41
548 678 7.639945 AGTACAGTACAAGAAAAACAATCAGC 58.360 34.615 13.37 0.00 0.00 4.26
567 697 5.582665 GGGCTTGTCTTTTCATCTAGTACAG 59.417 44.000 0.00 0.00 0.00 2.74
568 698 5.488341 GGGCTTGTCTTTTCATCTAGTACA 58.512 41.667 0.00 0.00 0.00 2.90
569 699 4.876679 GGGGCTTGTCTTTTCATCTAGTAC 59.123 45.833 0.00 0.00 0.00 2.73
570 700 4.382685 CGGGGCTTGTCTTTTCATCTAGTA 60.383 45.833 0.00 0.00 0.00 1.82
571 701 3.619979 CGGGGCTTGTCTTTTCATCTAGT 60.620 47.826 0.00 0.00 0.00 2.57
572 702 2.939103 CGGGGCTTGTCTTTTCATCTAG 59.061 50.000 0.00 0.00 0.00 2.43
573 703 2.355716 CCGGGGCTTGTCTTTTCATCTA 60.356 50.000 0.00 0.00 0.00 1.98
574 704 1.614317 CCGGGGCTTGTCTTTTCATCT 60.614 52.381 0.00 0.00 0.00 2.90
575 705 0.811281 CCGGGGCTTGTCTTTTCATC 59.189 55.000 0.00 0.00 0.00 2.92
613 743 7.859325 TTTACTTTCCACTTGTATCTATGCC 57.141 36.000 0.00 0.00 0.00 4.40
634 764 7.680739 AGGCCCTCCTTTTTGGTATTTTATTTA 59.319 33.333 0.00 0.00 40.66 1.40
643 773 1.755200 AGAGGCCCTCCTTTTTGGTA 58.245 50.000 7.26 0.00 44.46 3.25
670 800 0.318699 GGTTTTCGCTGAAAGGTGGC 60.319 55.000 4.41 0.00 32.93 5.01
674 804 1.537202 CCTCAGGTTTTCGCTGAAAGG 59.463 52.381 0.00 0.00 32.93 3.11
931 1063 0.886490 CAGTGAAGTGGAGTGGTGCC 60.886 60.000 0.00 0.00 0.00 5.01
1069 1219 2.415608 CGACGAGGAGCAGGGCTAA 61.416 63.158 0.00 0.00 39.88 3.09
1322 1474 3.735237 AGTGAAGAGCGAAACAGAAGA 57.265 42.857 0.00 0.00 0.00 2.87
1430 1587 5.995282 TCCGAGTATAAATTGTGGCCAATAG 59.005 40.000 7.24 0.00 40.42 1.73
1431 1588 5.931294 TCCGAGTATAAATTGTGGCCAATA 58.069 37.500 7.24 0.00 40.42 1.90
1482 1644 7.771927 ATCAACTGATGATTTTCAGAAACCT 57.228 32.000 8.36 0.00 46.85 3.50
1498 1660 1.699083 TGTCCAGCTCCAATCAACTGA 59.301 47.619 0.00 0.00 31.67 3.41
1547 1720 2.733956 GCAAATATTCCCCCACACTCA 58.266 47.619 0.00 0.00 0.00 3.41
1551 1724 2.223803 AACGCAAATATTCCCCCACA 57.776 45.000 0.00 0.00 0.00 4.17
1552 1725 3.517602 GAAAACGCAAATATTCCCCCAC 58.482 45.455 0.00 0.00 0.00 4.61
1554 1727 2.498078 TGGAAAACGCAAATATTCCCCC 59.502 45.455 0.00 0.00 40.49 5.40
1555 1728 3.194755 ACTGGAAAACGCAAATATTCCCC 59.805 43.478 0.00 0.00 40.49 4.81
1556 1729 4.082463 TCACTGGAAAACGCAAATATTCCC 60.082 41.667 0.00 0.00 40.49 3.97
1557 1730 5.054390 TCACTGGAAAACGCAAATATTCC 57.946 39.130 0.00 0.00 41.37 3.01
1558 1731 5.095490 CCTCACTGGAAAACGCAAATATTC 58.905 41.667 0.00 0.00 38.35 1.75
1559 1732 4.082245 CCCTCACTGGAAAACGCAAATATT 60.082 41.667 0.00 0.00 38.35 1.28
1560 1733 3.443681 CCCTCACTGGAAAACGCAAATAT 59.556 43.478 0.00 0.00 38.35 1.28
1561 1734 2.817258 CCCTCACTGGAAAACGCAAATA 59.183 45.455 0.00 0.00 38.35 1.40
1568 1741 3.425162 AGTCATCCCTCACTGGAAAAC 57.575 47.619 0.00 0.00 38.10 2.43
1587 1760 8.217131 TGAATCATACACATTGGAGATTCAAG 57.783 34.615 11.81 0.00 44.65 3.02
1603 1782 8.668510 ACCAAGAACTCATATGTGAATCATAC 57.331 34.615 11.60 0.00 41.13 2.39
1658 1842 8.414003 ACCCAAGAAAATTTTACTGTTCTCTTC 58.586 33.333 2.75 0.00 30.10 2.87
1661 1845 7.712797 TCACCCAAGAAAATTTTACTGTTCTC 58.287 34.615 2.75 0.00 30.10 2.87
1663 1847 8.710835 TTTCACCCAAGAAAATTTTACTGTTC 57.289 30.769 2.75 0.00 34.77 3.18
1781 1969 0.322636 ACGAGAGGAGATCCACACGT 60.323 55.000 13.98 13.98 45.15 4.49
1880 2069 5.188751 TCCCCCAAAAATTTAATGCAGGTAG 59.811 40.000 0.00 0.00 0.00 3.18
2021 2218 1.344065 TACCCTGTGGTACCACTGTG 58.656 55.000 37.91 31.52 45.45 3.66
2022 2219 3.875892 TACCCTGTGGTACCACTGT 57.124 52.632 37.91 31.72 45.45 3.55
2046 2243 1.494721 ACCAATCAAGTCACTGGTGGT 59.505 47.619 0.70 0.00 40.69 4.16
2047 2244 2.276732 ACCAATCAAGTCACTGGTGG 57.723 50.000 0.70 0.00 40.69 4.61
2048 2245 4.156556 CCATTACCAATCAAGTCACTGGTG 59.843 45.833 2.87 0.00 42.19 4.17
2089 2287 0.675837 CACATCCCTGCACCTGTCAG 60.676 60.000 0.00 0.00 0.00 3.51
2105 2303 0.178767 CCCATGGAAGAGATCGCACA 59.821 55.000 15.22 0.00 0.00 4.57
2205 2403 1.683011 CCATCGTCAGGCCTTCCATTT 60.683 52.381 0.00 0.00 33.74 2.32
2250 2448 1.666011 CGGTACCTCGCAGCCATAT 59.334 57.895 10.90 0.00 0.00 1.78
2265 2463 1.961277 CTTGCTCTCAAACGGCGGT 60.961 57.895 13.24 0.00 0.00 5.68
2392 2590 9.744468 ATACAAAGAAGAACACGCTTTAAAATT 57.256 25.926 0.00 0.00 31.21 1.82
2398 2596 6.019881 GCAAAATACAAAGAAGAACACGCTTT 60.020 34.615 0.00 0.00 32.46 3.51
2399 2597 5.458779 GCAAAATACAAAGAAGAACACGCTT 59.541 36.000 0.00 0.00 0.00 4.68
2400 2598 4.976116 GCAAAATACAAAGAAGAACACGCT 59.024 37.500 0.00 0.00 0.00 5.07
2401 2599 4.143824 CGCAAAATACAAAGAAGAACACGC 60.144 41.667 0.00 0.00 0.00 5.34
2402 2600 4.143824 GCGCAAAATACAAAGAAGAACACG 60.144 41.667 0.30 0.00 0.00 4.49
2404 2602 4.037446 AGGCGCAAAATACAAAGAAGAACA 59.963 37.500 10.83 0.00 0.00 3.18
2407 2605 4.072131 AGAGGCGCAAAATACAAAGAAGA 58.928 39.130 10.83 0.00 0.00 2.87
2408 2606 4.425577 AGAGGCGCAAAATACAAAGAAG 57.574 40.909 10.83 0.00 0.00 2.85
2414 2623 5.270893 TCATACTAGAGGCGCAAAATACA 57.729 39.130 10.83 0.00 0.00 2.29
2420 2629 4.433615 CTTTCTTCATACTAGAGGCGCAA 58.566 43.478 10.83 0.00 0.00 4.85
2513 2811 3.428534 CCTAAAACAAATTCTGCGGCAAC 59.571 43.478 3.44 0.00 0.00 4.17
2517 2815 3.296322 TGCCTAAAACAAATTCTGCGG 57.704 42.857 0.00 0.00 0.00 5.69
2518 2816 4.090354 CACATGCCTAAAACAAATTCTGCG 59.910 41.667 0.00 0.00 0.00 5.18
2522 2820 6.346838 GCTTGACACATGCCTAAAACAAATTC 60.347 38.462 0.00 0.00 0.00 2.17
2541 2839 6.750963 AGTTATGCGTACTACTAAAGCTTGAC 59.249 38.462 0.00 0.00 0.00 3.18
2558 2856 5.918576 TCGGAATGATACAGTTAGTTATGCG 59.081 40.000 0.00 0.00 0.00 4.73
2598 2896 7.769507 TCTCTAGTTCTCTTAAGCTTGATACGA 59.230 37.037 9.86 0.00 0.00 3.43
2639 2939 8.859090 AGGACAAAATAAACACATCATTCTTGA 58.141 29.630 0.00 0.00 36.00 3.02
2683 2984 5.278604 ACGGAAAGTAATGAAACTGCAAAC 58.721 37.500 0.00 0.00 0.00 2.93
2688 2989 6.236017 TGCTAACGGAAAGTAATGAAACTG 57.764 37.500 0.00 0.00 0.00 3.16
2689 2990 6.870971 TTGCTAACGGAAAGTAATGAAACT 57.129 33.333 0.00 0.00 0.00 2.66
2690 2991 6.581166 CCTTTGCTAACGGAAAGTAATGAAAC 59.419 38.462 5.77 0.00 44.29 2.78
2693 2994 4.698304 CCCTTTGCTAACGGAAAGTAATGA 59.302 41.667 5.77 0.00 44.29 2.57
2695 2996 4.014406 CCCCTTTGCTAACGGAAAGTAAT 58.986 43.478 5.77 0.00 44.29 1.89
2700 3001 3.009253 TGATACCCCTTTGCTAACGGAAA 59.991 43.478 0.00 0.00 0.00 3.13
2701 3002 2.572556 TGATACCCCTTTGCTAACGGAA 59.427 45.455 0.00 0.00 0.00 4.30
2704 3005 3.195661 GTCTGATACCCCTTTGCTAACG 58.804 50.000 0.00 0.00 0.00 3.18
2710 3011 3.543680 ATGTCGTCTGATACCCCTTTG 57.456 47.619 0.00 0.00 0.00 2.77
2711 3012 5.888982 AATATGTCGTCTGATACCCCTTT 57.111 39.130 0.00 0.00 0.00 3.11
2724 3025 6.581542 GCGAGCATAGTAAGTTAATATGTCGT 59.418 38.462 29.48 18.99 39.46 4.34
2786 3088 4.342092 CGAAAAATGCAGAGGGGGATAAAT 59.658 41.667 0.00 0.00 0.00 1.40
2826 3128 3.750652 TGATAAATTCACAGTGCGCAAGA 59.249 39.130 14.00 5.19 43.02 3.02
2853 3157 4.186926 CACAAGGTCGAATGTCTGATCAT 58.813 43.478 0.00 0.00 0.00 2.45
2917 3377 6.053005 TGTTACCTCCGGATTTTGACATATC 58.947 40.000 3.57 0.00 0.00 1.63
2918 3378 5.996644 TGTTACCTCCGGATTTTGACATAT 58.003 37.500 3.57 0.00 0.00 1.78
2919 3379 5.423704 TGTTACCTCCGGATTTTGACATA 57.576 39.130 3.57 0.00 0.00 2.29
2920 3380 4.295141 TGTTACCTCCGGATTTTGACAT 57.705 40.909 3.57 0.00 0.00 3.06
2922 3382 5.638596 ATTTGTTACCTCCGGATTTTGAC 57.361 39.130 3.57 1.17 0.00 3.18
2923 3383 9.635404 ATTATATTTGTTACCTCCGGATTTTGA 57.365 29.630 3.57 0.00 0.00 2.69
2928 3388 7.883311 CCTCAATTATATTTGTTACCTCCGGAT 59.117 37.037 3.57 0.00 0.00 4.18
2930 3390 6.996282 ACCTCAATTATATTTGTTACCTCCGG 59.004 38.462 0.00 0.00 0.00 5.14
2931 3391 9.550406 TTACCTCAATTATATTTGTTACCTCCG 57.450 33.333 7.13 0.00 0.00 4.63
2948 3408 9.745018 TCAAAGATTCTTCAGAATTACCTCAAT 57.255 29.630 3.54 0.00 44.14 2.57
2949 3409 9.745018 ATCAAAGATTCTTCAGAATTACCTCAA 57.255 29.630 3.54 0.00 44.14 3.02
2950 3410 9.170734 CATCAAAGATTCTTCAGAATTACCTCA 57.829 33.333 3.54 0.00 44.14 3.86
2951 3411 8.619546 CCATCAAAGATTCTTCAGAATTACCTC 58.380 37.037 3.54 0.00 44.14 3.85
2952 3412 8.331740 TCCATCAAAGATTCTTCAGAATTACCT 58.668 33.333 3.54 0.00 44.14 3.08
2953 3413 8.511604 TCCATCAAAGATTCTTCAGAATTACC 57.488 34.615 3.54 0.00 44.14 2.85
2977 3437 7.301054 CAATCGGCCTCAACAAGAATATAATC 58.699 38.462 0.00 0.00 0.00 1.75
2979 3439 5.008613 GCAATCGGCCTCAACAAGAATATAA 59.991 40.000 0.00 0.00 36.11 0.98
2983 3443 1.474077 GCAATCGGCCTCAACAAGAAT 59.526 47.619 0.00 0.00 36.11 2.40
2996 3456 2.588877 CGGTAGCTGGGCAATCGG 60.589 66.667 0.00 0.00 0.00 4.18
2997 3457 2.588877 CCGGTAGCTGGGCAATCG 60.589 66.667 0.00 0.00 0.00 3.34
3001 3461 4.015406 CACACCGGTAGCTGGGCA 62.015 66.667 6.87 0.00 33.40 5.36
3003 3463 1.899437 ATGACACACCGGTAGCTGGG 61.899 60.000 6.87 0.00 33.40 4.45
3004 3464 0.036388 AATGACACACCGGTAGCTGG 60.036 55.000 6.87 0.00 35.68 4.85
3064 3527 2.673775 TCTGAATGTTGGAAAGGGCA 57.326 45.000 0.00 0.00 0.00 5.36
3065 3528 4.221482 AGAAATCTGAATGTTGGAAAGGGC 59.779 41.667 0.00 0.00 0.00 5.19
3067 3530 6.154445 CACAGAAATCTGAATGTTGGAAAGG 58.846 40.000 16.93 0.00 46.59 3.11
3068 3531 6.154445 CCACAGAAATCTGAATGTTGGAAAG 58.846 40.000 16.93 0.00 46.59 2.62
3074 3537 7.765695 AATGTACCACAGAAATCTGAATGTT 57.234 32.000 16.93 0.00 46.59 2.71
3087 3550 6.054941 TGCCATACAGAATAATGTACCACAG 58.945 40.000 0.00 0.00 38.43 3.66
3097 3560 7.041167 GCATCAACTACATGCCATACAGAATAA 60.041 37.037 0.00 0.00 40.79 1.40
3110 3573 6.635641 GCACAAATGATAGCATCAACTACATG 59.364 38.462 0.00 0.00 43.50 3.21
3111 3574 6.544931 AGCACAAATGATAGCATCAACTACAT 59.455 34.615 0.00 0.00 43.50 2.29
3112 3575 5.882000 AGCACAAATGATAGCATCAACTACA 59.118 36.000 0.00 0.00 43.50 2.74
3113 3576 6.369059 AGCACAAATGATAGCATCAACTAC 57.631 37.500 0.00 0.00 43.50 2.73
3114 3577 6.183360 CCAAGCACAAATGATAGCATCAACTA 60.183 38.462 0.00 0.00 43.50 2.24
3115 3578 5.393787 CCAAGCACAAATGATAGCATCAACT 60.394 40.000 0.00 0.00 43.50 3.16
3116 3579 4.802039 CCAAGCACAAATGATAGCATCAAC 59.198 41.667 0.00 0.00 43.50 3.18
3117 3580 4.678574 GCCAAGCACAAATGATAGCATCAA 60.679 41.667 0.00 0.00 43.50 2.57
3118 3581 3.181484 GCCAAGCACAAATGATAGCATCA 60.181 43.478 0.00 2.05 44.55 3.07
3129 3592 3.871485 ACAAAATTCAGCCAAGCACAAA 58.129 36.364 0.00 0.00 0.00 2.83
3131 3594 3.636300 AGTACAAAATTCAGCCAAGCACA 59.364 39.130 0.00 0.00 0.00 4.57
3152 3615 3.689649 CACTTATTTTGGGACGAAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
3153 3616 3.073356 ACACTTATTTTGGGACGAAGGGA 59.927 43.478 0.00 0.00 0.00 4.20
3154 3617 3.418047 ACACTTATTTTGGGACGAAGGG 58.582 45.455 0.00 0.00 0.00 3.95
3155 3618 3.124636 CGACACTTATTTTGGGACGAAGG 59.875 47.826 0.00 0.00 0.00 3.46
3156 3619 3.424433 GCGACACTTATTTTGGGACGAAG 60.424 47.826 0.00 0.00 0.00 3.79
3157 3620 2.481185 GCGACACTTATTTTGGGACGAA 59.519 45.455 0.00 0.00 0.00 3.85
3158 3621 2.070783 GCGACACTTATTTTGGGACGA 58.929 47.619 0.00 0.00 0.00 4.20
3159 3622 2.073816 AGCGACACTTATTTTGGGACG 58.926 47.619 0.00 0.00 0.00 4.79
3160 3623 3.071479 TCAGCGACACTTATTTTGGGAC 58.929 45.455 0.00 0.00 0.00 4.46
3161 3624 3.410631 TCAGCGACACTTATTTTGGGA 57.589 42.857 0.00 0.00 0.00 4.37
3162 3625 4.701956 AATCAGCGACACTTATTTTGGG 57.298 40.909 0.00 0.00 0.00 4.12
3163 3626 6.842163 ACTAAATCAGCGACACTTATTTTGG 58.158 36.000 0.00 0.00 34.69 3.28
3164 3627 8.440059 TGTACTAAATCAGCGACACTTATTTTG 58.560 33.333 0.00 0.00 34.69 2.44
3165 3628 8.542497 TGTACTAAATCAGCGACACTTATTTT 57.458 30.769 0.00 0.00 34.69 1.82
3166 3629 8.440833 GTTGTACTAAATCAGCGACACTTATTT 58.559 33.333 0.00 0.00 36.43 1.40
3167 3630 7.064253 GGTTGTACTAAATCAGCGACACTTATT 59.936 37.037 0.00 0.00 0.00 1.40
3168 3631 6.534079 GGTTGTACTAAATCAGCGACACTTAT 59.466 38.462 0.00 0.00 0.00 1.73
3169 3632 5.865552 GGTTGTACTAAATCAGCGACACTTA 59.134 40.000 0.00 0.00 0.00 2.24
3170 3633 4.689345 GGTTGTACTAAATCAGCGACACTT 59.311 41.667 0.00 0.00 0.00 3.16
3171 3634 4.243270 GGTTGTACTAAATCAGCGACACT 58.757 43.478 0.00 0.00 0.00 3.55
3172 3635 3.060363 CGGTTGTACTAAATCAGCGACAC 59.940 47.826 0.00 0.00 0.00 3.67
3173 3636 3.057386 TCGGTTGTACTAAATCAGCGACA 60.057 43.478 0.00 0.00 32.81 4.35
3174 3637 3.504863 TCGGTTGTACTAAATCAGCGAC 58.495 45.455 0.00 0.00 32.81 5.19
3175 3638 3.428452 CCTCGGTTGTACTAAATCAGCGA 60.428 47.826 0.00 0.00 36.11 4.93
3176 3639 2.858344 CCTCGGTTGTACTAAATCAGCG 59.142 50.000 0.00 0.00 0.00 5.18
3177 3640 3.118884 TCCCTCGGTTGTACTAAATCAGC 60.119 47.826 0.00 0.00 0.00 4.26
3178 3641 4.159879 ACTCCCTCGGTTGTACTAAATCAG 59.840 45.833 0.00 0.00 0.00 2.90
3179 3642 4.091549 ACTCCCTCGGTTGTACTAAATCA 58.908 43.478 0.00 0.00 0.00 2.57
3180 3643 4.732672 ACTCCCTCGGTTGTACTAAATC 57.267 45.455 0.00 0.00 0.00 2.17
3181 3644 5.481473 TGTTACTCCCTCGGTTGTACTAAAT 59.519 40.000 0.00 0.00 0.00 1.40
3182 3645 4.832266 TGTTACTCCCTCGGTTGTACTAAA 59.168 41.667 0.00 0.00 0.00 1.85
3183 3646 4.406456 TGTTACTCCCTCGGTTGTACTAA 58.594 43.478 0.00 0.00 0.00 2.24
3184 3647 4.032960 TGTTACTCCCTCGGTTGTACTA 57.967 45.455 0.00 0.00 0.00 1.82
3185 3648 2.880443 TGTTACTCCCTCGGTTGTACT 58.120 47.619 0.00 0.00 0.00 2.73
3186 3649 3.243839 TGTTGTTACTCCCTCGGTTGTAC 60.244 47.826 0.00 0.00 0.00 2.90
3187 3650 2.964464 TGTTGTTACTCCCTCGGTTGTA 59.036 45.455 0.00 0.00 0.00 2.41
3188 3651 1.764134 TGTTGTTACTCCCTCGGTTGT 59.236 47.619 0.00 0.00 0.00 3.32
3189 3652 2.536761 TGTTGTTACTCCCTCGGTTG 57.463 50.000 0.00 0.00 0.00 3.77
3190 3653 4.040706 TGTTATGTTGTTACTCCCTCGGTT 59.959 41.667 0.00 0.00 0.00 4.44
3191 3654 3.579586 TGTTATGTTGTTACTCCCTCGGT 59.420 43.478 0.00 0.00 0.00 4.69
3192 3655 4.181578 CTGTTATGTTGTTACTCCCTCGG 58.818 47.826 0.00 0.00 0.00 4.63
3193 3656 4.081862 TCCTGTTATGTTGTTACTCCCTCG 60.082 45.833 0.00 0.00 0.00 4.63
3194 3657 5.416271 TCCTGTTATGTTGTTACTCCCTC 57.584 43.478 0.00 0.00 0.00 4.30
3195 3658 6.388619 AATCCTGTTATGTTGTTACTCCCT 57.611 37.500 0.00 0.00 0.00 4.20
3196 3659 8.747538 ATAAATCCTGTTATGTTGTTACTCCC 57.252 34.615 0.00 0.00 0.00 4.30
3197 3660 9.391006 TGATAAATCCTGTTATGTTGTTACTCC 57.609 33.333 0.00 0.00 0.00 3.85
3202 3665 8.462016 GCTTCTGATAAATCCTGTTATGTTGTT 58.538 33.333 0.00 0.00 0.00 2.83
3392 3863 1.399440 CCGTTCTCGTCCTCGAATACA 59.601 52.381 0.00 0.00 45.61 2.29
3393 3864 1.667724 TCCGTTCTCGTCCTCGAATAC 59.332 52.381 0.00 0.00 45.61 1.89
3521 3992 0.899720 CCAGGTACACCGCCTTCTTA 59.100 55.000 0.00 0.00 42.08 2.10
3587 4058 1.142748 GTCGATGCTCACCTCCCTG 59.857 63.158 0.00 0.00 0.00 4.45
3686 4157 1.593209 GAAGTGCGACGGTGACCAA 60.593 57.895 1.11 0.00 0.00 3.67
3692 4163 4.052229 CCCTCGAAGTGCGACGGT 62.052 66.667 0.57 0.00 45.59 4.83
4042 4525 2.795297 CGAGTCCTCAGTCCTCGC 59.205 66.667 0.00 0.00 41.21 5.03
4125 4608 0.035881 CCTGCCAGCAAGAAGAGACA 59.964 55.000 0.00 0.00 0.00 3.41
4127 4610 1.681666 CCCTGCCAGCAAGAAGAGA 59.318 57.895 0.00 0.00 0.00 3.10
4159 4642 4.899352 AACATCACTCAAGCCTCTAACT 57.101 40.909 0.00 0.00 0.00 2.24
4250 4752 0.954452 CCATAGAAAGGCCGGCATTC 59.046 55.000 28.52 27.98 0.00 2.67
4395 5248 0.034896 GAGAAACTCTGGCAACCCGA 59.965 55.000 0.00 0.00 0.00 5.14
4396 5249 0.035458 AGAGAAACTCTGGCAACCCG 59.965 55.000 0.25 0.00 39.62 5.28
4430 5283 8.988064 GGAGAAAGAAAATCCCTTTTATCAAC 57.012 34.615 0.00 0.00 34.73 3.18
4491 5344 6.368805 ACATTTCTTTTCTTTCTGTCTCCCT 58.631 36.000 0.00 0.00 0.00 4.20
4508 5361 9.893305 GCTATGTTTAACACTTGTTACATTTCT 57.107 29.630 13.22 0.00 39.92 2.52
4509 5362 9.672086 TGCTATGTTTAACACTTGTTACATTTC 57.328 29.630 13.22 8.13 39.92 2.17
4510 5363 9.458374 GTGCTATGTTTAACACTTGTTACATTT 57.542 29.630 13.22 0.00 39.92 2.32
4511 5364 8.625651 TGTGCTATGTTTAACACTTGTTACATT 58.374 29.630 13.22 2.52 39.92 2.71
4512 5365 8.073768 GTGTGCTATGTTTAACACTTGTTACAT 58.926 33.333 12.77 12.77 39.92 2.29
4513 5366 7.411274 GTGTGCTATGTTTAACACTTGTTACA 58.589 34.615 0.00 1.21 39.92 2.41
4514 5367 6.854381 GGTGTGCTATGTTTAACACTTGTTAC 59.146 38.462 0.00 0.00 42.03 2.50
4515 5368 6.016943 GGGTGTGCTATGTTTAACACTTGTTA 60.017 38.462 0.00 0.00 42.03 2.41
4516 5369 5.221165 GGGTGTGCTATGTTTAACACTTGTT 60.221 40.000 0.00 0.00 42.03 2.83
4517 5370 4.277423 GGGTGTGCTATGTTTAACACTTGT 59.723 41.667 0.00 0.00 42.03 3.16
4518 5371 4.612712 CGGGTGTGCTATGTTTAACACTTG 60.613 45.833 0.00 0.00 42.03 3.16
4519 5372 3.500680 CGGGTGTGCTATGTTTAACACTT 59.499 43.478 0.00 0.00 42.03 3.16
4551 5404 1.737793 CCTGATTCCTGTTGTAACCGC 59.262 52.381 0.00 0.00 0.00 5.68
4757 5613 9.403583 CTGGTTACCATATAGAAAGGCTTTAAA 57.596 33.333 13.37 4.28 30.82 1.52
4786 5642 7.201920 GGCTAGATGTATTGTGGAAGAGTTAGA 60.202 40.741 0.00 0.00 0.00 2.10
4851 5707 3.324099 GAGTTCGCGACGCTGGAGA 62.324 63.158 19.02 4.54 0.00 3.71
4931 5787 0.881796 CGGAGCTATGGCGTGATCTA 59.118 55.000 0.00 0.00 44.37 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.