Multiple sequence alignment - TraesCS7D01G371300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G371300 chr7D 100.000 2909 0 0 1 2909 479766981 479764073 0.000000e+00 5373.0
1 TraesCS7D01G371300 chr7D 100.000 29 0 0 1 29 58456999 58457027 1.000000e-03 54.7
2 TraesCS7D01G371300 chr7D 100.000 29 0 0 1 29 303401421 303401449 1.000000e-03 54.7
3 TraesCS7D01G371300 chr7D 100.000 29 0 0 1 29 397134589 397134561 1.000000e-03 54.7
4 TraesCS7D01G371300 chr2D 80.551 1995 350 36 694 2660 90313646 90315630 0.000000e+00 1500.0
5 TraesCS7D01G371300 chr1A 79.915 1648 317 14 800 2438 361191640 361193282 0.000000e+00 1197.0
6 TraesCS7D01G371300 chr4B 77.810 1717 343 25 694 2379 630132364 630134073 0.000000e+00 1026.0
7 TraesCS7D01G371300 chr5B 77.030 1724 351 35 692 2379 293307005 293308719 0.000000e+00 948.0
8 TraesCS7D01G371300 chr3A 76.089 1744 349 45 681 2379 558696239 558697959 0.000000e+00 848.0
9 TraesCS7D01G371300 chr3A 100.000 29 0 0 1 29 92517831 92517859 1.000000e-03 54.7
10 TraesCS7D01G371300 chr3A 100.000 29 0 0 1 29 509506635 509506663 1.000000e-03 54.7
11 TraesCS7D01G371300 chr7B 89.274 606 32 11 28 633 505576564 505575992 0.000000e+00 728.0
12 TraesCS7D01G371300 chr6A 92.727 110 7 1 168 277 15942428 15942536 1.080000e-34 158.0
13 TraesCS7D01G371300 chr3D 94.624 93 4 1 176 268 58753515 58753606 3.020000e-30 143.0
14 TraesCS7D01G371300 chr2B 80.311 193 29 5 1090 1278 108652037 108651850 1.410000e-28 137.0
15 TraesCS7D01G371300 chr4D 100.000 30 0 0 1 30 150490452 150490423 4.050000e-04 56.5
16 TraesCS7D01G371300 chr4D 100.000 28 0 0 1 28 124732536 124732563 5.000000e-03 52.8
17 TraesCS7D01G371300 chr6D 100.000 28 0 0 1 28 15180926 15180899 5.000000e-03 52.8
18 TraesCS7D01G371300 chr6D 100.000 28 0 0 1 28 65319360 65319333 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G371300 chr7D 479764073 479766981 2908 True 5373 5373 100.000 1 2909 1 chr7D.!!$R2 2908
1 TraesCS7D01G371300 chr2D 90313646 90315630 1984 False 1500 1500 80.551 694 2660 1 chr2D.!!$F1 1966
2 TraesCS7D01G371300 chr1A 361191640 361193282 1642 False 1197 1197 79.915 800 2438 1 chr1A.!!$F1 1638
3 TraesCS7D01G371300 chr4B 630132364 630134073 1709 False 1026 1026 77.810 694 2379 1 chr4B.!!$F1 1685
4 TraesCS7D01G371300 chr5B 293307005 293308719 1714 False 948 948 77.030 692 2379 1 chr5B.!!$F1 1687
5 TraesCS7D01G371300 chr3A 558696239 558697959 1720 False 848 848 76.089 681 2379 1 chr3A.!!$F3 1698
6 TraesCS7D01G371300 chr7B 505575992 505576564 572 True 728 728 89.274 28 633 1 chr7B.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.107945 CCCAGTGCTCAAGAGGTAGC 60.108 60.0 0.00 0.00 39.25 3.58 F
1551 1580 0.033601 ACAGGTCAGAGATCTCGCCT 60.034 55.0 22.42 22.42 33.73 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1829 0.033796 CCTCCAACTCCCATGCATGT 60.034 55.0 24.58 3.69 0.00 3.21 R
2749 2792 0.036765 TTGCACCATCCGTGTCTACC 60.037 55.0 0.00 0.00 44.97 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.116091 AACCAACCCAGTGCTCAAG 57.884 52.632 0.00 0.00 0.00 3.02
19 20 0.550914 AACCAACCCAGTGCTCAAGA 59.449 50.000 0.00 0.00 0.00 3.02
20 21 0.109342 ACCAACCCAGTGCTCAAGAG 59.891 55.000 0.00 0.00 0.00 2.85
21 22 0.607489 CCAACCCAGTGCTCAAGAGG 60.607 60.000 0.00 0.00 0.00 3.69
22 23 0.109342 CAACCCAGTGCTCAAGAGGT 59.891 55.000 0.00 0.00 0.00 3.85
23 24 1.347707 CAACCCAGTGCTCAAGAGGTA 59.652 52.381 0.00 0.00 0.00 3.08
24 25 1.270907 ACCCAGTGCTCAAGAGGTAG 58.729 55.000 0.00 0.00 0.00 3.18
25 26 0.107945 CCCAGTGCTCAAGAGGTAGC 60.108 60.000 0.00 0.00 39.25 3.58
26 27 0.610174 CCAGTGCTCAAGAGGTAGCA 59.390 55.000 0.00 0.00 46.11 3.49
30 31 1.250840 TGCTCAAGAGGTAGCAGCGA 61.251 55.000 0.00 0.00 43.56 4.93
47 48 4.731773 GCAGCGATTCATTCCTAAACTTGG 60.732 45.833 0.00 0.00 0.00 3.61
217 218 9.686683 AGTAAGCAACCTCATATTTAAAGTGAT 57.313 29.630 6.55 0.00 0.00 3.06
218 219 9.722056 GTAAGCAACCTCATATTTAAAGTGATG 57.278 33.333 6.55 6.76 0.00 3.07
219 220 8.579850 AAGCAACCTCATATTTAAAGTGATGA 57.420 30.769 12.43 10.71 0.00 2.92
220 221 8.579850 AGCAACCTCATATTTAAAGTGATGAA 57.420 30.769 12.43 0.88 0.00 2.57
221 222 9.023962 AGCAACCTCATATTTAAAGTGATGAAA 57.976 29.630 12.43 0.00 0.00 2.69
222 223 9.807649 GCAACCTCATATTTAAAGTGATGAAAT 57.192 29.630 12.43 0.00 0.00 2.17
240 241 5.345702 TGAAATTGAGCTATCATGCTTTGC 58.654 37.500 0.00 0.00 44.17 3.68
250 251 1.612950 TCATGCTTTGCGTGGTGAATT 59.387 42.857 11.20 0.00 44.68 2.17
252 253 2.987413 TGCTTTGCGTGGTGAATTAG 57.013 45.000 0.00 0.00 0.00 1.73
253 254 2.499197 TGCTTTGCGTGGTGAATTAGA 58.501 42.857 0.00 0.00 0.00 2.10
254 255 3.081061 TGCTTTGCGTGGTGAATTAGAT 58.919 40.909 0.00 0.00 0.00 1.98
255 256 4.257731 TGCTTTGCGTGGTGAATTAGATA 58.742 39.130 0.00 0.00 0.00 1.98
256 257 4.697828 TGCTTTGCGTGGTGAATTAGATAA 59.302 37.500 0.00 0.00 0.00 1.75
257 258 5.356751 TGCTTTGCGTGGTGAATTAGATAAT 59.643 36.000 0.00 0.00 0.00 1.28
258 259 6.540551 TGCTTTGCGTGGTGAATTAGATAATA 59.459 34.615 0.00 0.00 0.00 0.98
259 260 7.072030 GCTTTGCGTGGTGAATTAGATAATAG 58.928 38.462 0.00 0.00 0.00 1.73
340 341 8.534496 ACAATCTTAATTTTAGGCAAGCTTGAT 58.466 29.630 30.39 18.86 31.74 2.57
341 342 9.374838 CAATCTTAATTTTAGGCAAGCTTGATT 57.625 29.630 30.39 19.74 29.78 2.57
351 352 5.370679 AGGCAAGCTTGATTTGAAAATTGT 58.629 33.333 30.39 0.00 0.00 2.71
352 353 5.237779 AGGCAAGCTTGATTTGAAAATTGTG 59.762 36.000 30.39 0.00 0.00 3.33
353 354 5.007921 GGCAAGCTTGATTTGAAAATTGTGT 59.992 36.000 30.39 0.00 0.00 3.72
365 366 8.870160 TTTGAAAATTGTGTGGAGTTCTATTG 57.130 30.769 0.00 0.00 0.00 1.90
372 373 9.744468 AATTGTGTGGAGTTCTATTGTTTTTAC 57.256 29.630 0.00 0.00 0.00 2.01
376 377 9.048446 GTGTGGAGTTCTATTGTTTTTACTACA 57.952 33.333 0.00 0.00 0.00 2.74
392 393 8.431910 TTTTACTACAAAGTGATAGGTCTCCT 57.568 34.615 0.00 0.00 36.36 3.69
395 396 4.457834 ACAAAGTGATAGGTCTCCTTCG 57.542 45.455 0.00 0.00 34.61 3.79
400 401 4.208746 AGTGATAGGTCTCCTTCGGTAAG 58.791 47.826 0.00 0.00 34.61 2.34
404 405 3.957591 AGGTCTCCTTCGGTAAGTTTC 57.042 47.619 0.00 0.00 0.00 2.78
476 477 6.667848 ACCATGTCCGGAAGATATATGTGATA 59.332 38.462 5.23 0.00 0.00 2.15
510 511 7.830739 AGCAATAAAAATGGAACGATCTTTCT 58.169 30.769 11.32 0.00 0.00 2.52
511 512 7.756722 AGCAATAAAAATGGAACGATCTTTCTG 59.243 33.333 11.32 0.93 0.00 3.02
633 634 7.505585 ACCCATTTCTCAAAATTCTTGTAGTGA 59.494 33.333 0.00 0.00 32.69 3.41
634 635 8.359642 CCCATTTCTCAAAATTCTTGTAGTGAA 58.640 33.333 0.00 0.00 32.69 3.18
635 636 9.403110 CCATTTCTCAAAATTCTTGTAGTGAAG 57.597 33.333 0.00 0.00 32.69 3.02
636 637 9.403110 CATTTCTCAAAATTCTTGTAGTGAAGG 57.597 33.333 0.00 0.00 32.69 3.46
637 638 8.746052 TTTCTCAAAATTCTTGTAGTGAAGGA 57.254 30.769 0.00 0.00 0.00 3.36
638 639 7.969536 TCTCAAAATTCTTGTAGTGAAGGAG 57.030 36.000 0.00 0.00 0.00 3.69
639 640 7.735917 TCTCAAAATTCTTGTAGTGAAGGAGA 58.264 34.615 0.00 0.00 0.00 3.71
640 641 7.875041 TCTCAAAATTCTTGTAGTGAAGGAGAG 59.125 37.037 0.00 0.00 0.00 3.20
641 642 7.735917 TCAAAATTCTTGTAGTGAAGGAGAGA 58.264 34.615 0.00 0.00 0.00 3.10
642 643 7.875041 TCAAAATTCTTGTAGTGAAGGAGAGAG 59.125 37.037 0.00 0.00 0.00 3.20
643 644 7.546250 AAATTCTTGTAGTGAAGGAGAGAGA 57.454 36.000 0.00 0.00 0.00 3.10
644 645 6.773976 ATTCTTGTAGTGAAGGAGAGAGAG 57.226 41.667 0.00 0.00 0.00 3.20
645 646 5.506730 TCTTGTAGTGAAGGAGAGAGAGA 57.493 43.478 0.00 0.00 0.00 3.10
646 647 5.496556 TCTTGTAGTGAAGGAGAGAGAGAG 58.503 45.833 0.00 0.00 0.00 3.20
647 648 5.249622 TCTTGTAGTGAAGGAGAGAGAGAGA 59.750 44.000 0.00 0.00 0.00 3.10
648 649 5.506730 TGTAGTGAAGGAGAGAGAGAGAA 57.493 43.478 0.00 0.00 0.00 2.87
649 650 5.496556 TGTAGTGAAGGAGAGAGAGAGAAG 58.503 45.833 0.00 0.00 0.00 2.85
650 651 3.356290 AGTGAAGGAGAGAGAGAGAAGC 58.644 50.000 0.00 0.00 0.00 3.86
651 652 3.088532 GTGAAGGAGAGAGAGAGAAGCA 58.911 50.000 0.00 0.00 0.00 3.91
652 653 3.509575 GTGAAGGAGAGAGAGAGAAGCAA 59.490 47.826 0.00 0.00 0.00 3.91
653 654 3.763360 TGAAGGAGAGAGAGAGAAGCAAG 59.237 47.826 0.00 0.00 0.00 4.01
654 655 3.737559 AGGAGAGAGAGAGAAGCAAGA 57.262 47.619 0.00 0.00 0.00 3.02
655 656 3.624777 AGGAGAGAGAGAGAAGCAAGAG 58.375 50.000 0.00 0.00 0.00 2.85
656 657 2.099756 GGAGAGAGAGAGAAGCAAGAGC 59.900 54.545 0.00 0.00 42.56 4.09
666 667 4.361253 GCAAGAGCGAGTGGACAA 57.639 55.556 0.00 0.00 0.00 3.18
667 668 2.616969 GCAAGAGCGAGTGGACAAA 58.383 52.632 0.00 0.00 0.00 2.83
668 669 0.944386 GCAAGAGCGAGTGGACAAAA 59.056 50.000 0.00 0.00 0.00 2.44
669 670 1.069636 GCAAGAGCGAGTGGACAAAAG 60.070 52.381 0.00 0.00 0.00 2.27
670 671 2.483876 CAAGAGCGAGTGGACAAAAGA 58.516 47.619 0.00 0.00 0.00 2.52
671 672 3.070018 CAAGAGCGAGTGGACAAAAGAT 58.930 45.455 0.00 0.00 0.00 2.40
672 673 2.966050 AGAGCGAGTGGACAAAAGATC 58.034 47.619 0.00 0.00 0.00 2.75
673 674 2.300152 AGAGCGAGTGGACAAAAGATCA 59.700 45.455 0.00 0.00 0.00 2.92
674 675 2.413453 GAGCGAGTGGACAAAAGATCAC 59.587 50.000 0.00 0.00 0.00 3.06
675 676 1.464997 GCGAGTGGACAAAAGATCACC 59.535 52.381 0.00 0.00 0.00 4.02
676 677 2.766313 CGAGTGGACAAAAGATCACCA 58.234 47.619 0.00 0.00 0.00 4.17
679 680 1.886542 GTGGACAAAAGATCACCACCC 59.113 52.381 0.00 0.00 43.29 4.61
680 681 1.165270 GGACAAAAGATCACCACCCG 58.835 55.000 0.00 0.00 0.00 5.28
681 682 1.165270 GACAAAAGATCACCACCCGG 58.835 55.000 0.00 0.00 38.77 5.73
682 683 0.768622 ACAAAAGATCACCACCCGGA 59.231 50.000 0.73 0.00 35.59 5.14
683 684 1.271379 ACAAAAGATCACCACCCGGAG 60.271 52.381 0.73 0.00 35.59 4.63
684 685 1.003118 CAAAAGATCACCACCCGGAGA 59.997 52.381 0.73 0.00 36.23 3.71
685 686 0.905357 AAAGATCACCACCCGGAGAG 59.095 55.000 0.73 0.00 35.16 3.20
686 687 1.617947 AAGATCACCACCCGGAGAGC 61.618 60.000 0.73 0.00 38.44 4.09
687 688 3.432051 GATCACCACCCGGAGAGCG 62.432 68.421 0.73 0.00 35.16 5.03
688 689 3.957435 ATCACCACCCGGAGAGCGA 62.957 63.158 0.73 0.00 35.16 4.93
689 690 4.135153 CACCACCCGGAGAGCGAG 62.135 72.222 0.73 0.00 35.59 5.03
690 691 4.361971 ACCACCCGGAGAGCGAGA 62.362 66.667 0.73 0.00 35.59 4.04
691 692 3.827898 CCACCCGGAGAGCGAGAC 61.828 72.222 0.73 0.00 0.00 3.36
692 693 3.827898 CACCCGGAGAGCGAGACC 61.828 72.222 0.73 0.00 0.00 3.85
726 727 4.457496 CCCGCCACGCATCACTCT 62.457 66.667 0.00 0.00 0.00 3.24
835 852 0.317479 CCCTCGTTCCGTCAACTCTT 59.683 55.000 0.00 0.00 32.09 2.85
843 860 1.202722 TCCGTCAACTCTTTGTTCCCC 60.203 52.381 0.00 0.00 36.63 4.81
847 864 0.179001 CAACTCTTTGTTCCCCCGGT 60.179 55.000 0.00 0.00 36.63 5.28
864 881 2.124403 TAGAGGCCCGTCGTCTCC 60.124 66.667 0.00 0.00 40.17 3.71
897 914 3.234630 CTCGGCGTTGGAGGGTTCA 62.235 63.158 6.85 0.00 0.00 3.18
954 974 4.335647 CCAGCCGCACTCCCTGTT 62.336 66.667 0.00 0.00 0.00 3.16
986 1009 2.511600 GACGTGCAGGCGGCTAAT 60.512 61.111 12.74 0.00 45.15 1.73
990 1013 4.189580 TGCAGGCGGCTAATCCCC 62.190 66.667 12.74 0.00 45.15 4.81
996 1019 2.595095 CGGCTAATCCCCTGGCAA 59.405 61.111 0.00 0.00 0.00 4.52
1000 1023 0.839946 GCTAATCCCCTGGCAAGAGA 59.160 55.000 0.00 0.00 0.00 3.10
1021 1044 1.846712 GCCTGCCTCCAAGAAGACCT 61.847 60.000 0.00 0.00 0.00 3.85
1097 1120 1.033574 CCGGAGCGTAAGGAGATCTT 58.966 55.000 0.00 0.00 39.40 2.40
1203 1226 1.599047 CGGTCTCTCAGGGCATGTT 59.401 57.895 0.00 0.00 0.00 2.71
1275 1298 1.663702 CGAGGTCGCGACAAAGGTT 60.664 57.895 37.26 16.76 0.00 3.50
1287 1310 1.961277 AAAGGTTGCTCGCAGGTCG 60.961 57.895 0.00 0.00 40.15 4.79
1291 1314 3.303135 TTGCTCGCAGGTCGGACT 61.303 61.111 8.23 0.00 39.05 3.85
1294 1317 4.180946 CTCGCAGGTCGGACTCGG 62.181 72.222 8.23 0.71 39.05 4.63
1298 1324 3.760035 CAGGTCGGACTCGGTGGG 61.760 72.222 8.23 0.00 36.95 4.61
1368 1397 4.867599 CCGCCGCCCTCGTCTAAC 62.868 72.222 0.00 0.00 0.00 2.34
1371 1400 4.203076 CCGCCCTCGTCTAACCCG 62.203 72.222 0.00 0.00 0.00 5.28
1373 1402 3.846430 GCCCTCGTCTAACCCGGG 61.846 72.222 22.25 22.25 37.97 5.73
1374 1403 3.846430 CCCTCGTCTAACCCGGGC 61.846 72.222 24.08 1.80 0.00 6.13
1375 1404 2.758737 CCTCGTCTAACCCGGGCT 60.759 66.667 24.08 12.32 0.00 5.19
1377 1406 1.753463 CTCGTCTAACCCGGGCTCT 60.753 63.158 24.08 8.17 0.00 4.09
1392 1421 3.172106 TCTGACCCGGTTTGGCCA 61.172 61.111 0.00 0.00 36.97 5.36
1394 1423 3.783362 CTGACCCGGTTTGGCCACA 62.783 63.158 3.88 0.00 36.97 4.17
1395 1424 2.282887 GACCCGGTTTGGCCACAT 60.283 61.111 3.88 0.00 36.97 3.21
1398 1427 1.606313 CCCGGTTTGGCCACATCTT 60.606 57.895 3.88 0.00 36.97 2.40
1407 1436 3.057548 CCACATCTTGCTGCGCCA 61.058 61.111 4.18 0.00 0.00 5.69
1440 1469 2.189521 GTTGACCCGGCGATGGAT 59.810 61.111 9.30 0.00 0.00 3.41
1445 1474 4.235762 CCCGGCGATGGATCCGTT 62.236 66.667 9.30 0.00 43.87 4.44
1461 1490 2.186826 GTTGGAGCTGTGCGTGGTT 61.187 57.895 0.00 0.00 0.00 3.67
1467 1496 1.185618 AGCTGTGCGTGGTTAGGAGA 61.186 55.000 0.00 0.00 0.00 3.71
1495 1524 2.484417 GCCATGGATGACATCGAGTTCT 60.484 50.000 18.40 0.00 37.84 3.01
1497 1526 2.299993 TGGATGACATCGAGTTCTGC 57.700 50.000 9.31 0.00 0.00 4.26
1500 1529 2.468831 GATGACATCGAGTTCTGCCTC 58.531 52.381 0.00 0.00 0.00 4.70
1501 1530 1.256812 TGACATCGAGTTCTGCCTCA 58.743 50.000 0.00 0.00 0.00 3.86
1551 1580 0.033601 ACAGGTCAGAGATCTCGCCT 60.034 55.000 22.42 22.42 33.73 5.52
1557 1586 1.141858 TCAGAGATCTCGCCTGAGCTA 59.858 52.381 16.97 0.00 42.26 3.32
1594 1623 2.196742 AGACAAGATGGGCATCCCTA 57.803 50.000 3.27 0.00 45.70 3.53
1647 1676 2.885266 GGAGGACTTCTTGGTGGTTTTC 59.115 50.000 0.00 0.00 0.00 2.29
1672 1701 1.043816 GCAGGAGGATCGGAATCTGA 58.956 55.000 0.00 0.00 34.37 3.27
1704 1733 2.251371 GTGTTGGAGTTTCGCGGC 59.749 61.111 6.13 0.00 0.00 6.53
1706 1735 4.084888 GTTGGAGTTTCGCGGCCG 62.085 66.667 24.05 24.05 0.00 6.13
1740 1769 0.313043 GGCAATGGATCAGGCAATCG 59.687 55.000 0.00 0.00 0.00 3.34
1746 1775 1.378882 GGATCAGGCAATCGCAAGCA 61.379 55.000 0.00 0.00 41.24 3.91
1764 1793 4.341502 GTGTTTGCGGCCATGCGT 62.342 61.111 2.24 0.00 37.81 5.24
1777 1806 0.109597 CATGCGTTTCAAGGTGAGGC 60.110 55.000 0.00 0.00 0.00 4.70
1800 1829 2.445845 ATCGAGGGGATTCCGCCA 60.446 61.111 15.63 1.52 46.90 5.69
1908 1938 0.249280 TCTCGCTGCGTTCAAGTTGA 60.249 50.000 22.48 0.08 0.00 3.18
1910 1940 1.082756 CGCTGCGTTCAAGTTGACC 60.083 57.895 14.93 0.00 0.00 4.02
2022 2052 3.825308 ACATTGCAATACAAAGTGCTCG 58.175 40.909 12.53 0.00 46.66 5.03
2037 2067 1.136984 CTCGTACACCTGGACTCGC 59.863 63.158 0.00 0.00 0.00 5.03
2045 2075 1.040339 ACCTGGACTCGCTGATCTCC 61.040 60.000 0.00 0.00 0.00 3.71
2132 2162 1.561542 GACTTGGAGATGGACATGGGT 59.438 52.381 0.00 0.00 0.00 4.51
2141 2171 2.676471 GACATGGGTGGTGGCACC 60.676 66.667 29.75 29.75 44.27 5.01
2156 2186 1.571460 CACCAACACGCAGAGCTTC 59.429 57.895 0.00 0.00 0.00 3.86
2287 2326 3.574354 GAAGATTCCTTCCATGGCTCT 57.426 47.619 6.96 0.00 42.24 4.09
2294 2333 0.108207 CTTCCATGGCTCTGGCTAGG 59.892 60.000 6.96 0.00 36.16 3.02
2348 2390 1.123077 AGGATAGGCTGACATTGCGA 58.877 50.000 0.00 0.00 0.00 5.10
2354 2396 1.639298 GGCTGACATTGCGACAGTCC 61.639 60.000 6.04 0.00 39.30 3.85
2381 2423 3.790437 CGGATCACTGCTGGGCCT 61.790 66.667 4.53 0.00 0.00 5.19
2382 2424 2.434843 CGGATCACTGCTGGGCCTA 61.435 63.158 4.53 0.00 0.00 3.93
2384 2426 1.341156 GGATCACTGCTGGGCCTAGT 61.341 60.000 18.47 7.29 0.00 2.57
2388 2430 1.079256 ACTGCTGGGCCTAGTCAGA 59.921 57.895 32.04 11.60 33.11 3.27
2393 2436 0.032615 CTGGGCCTAGTCAGAGGAGT 60.033 60.000 8.21 0.00 39.15 3.85
2400 2443 3.502123 CTAGTCAGAGGAGTAGGAGGG 57.498 57.143 0.00 0.00 41.46 4.30
2430 2473 6.215845 AGACGGTTTGAATTTCAAATTCCAG 58.784 36.000 23.38 17.99 46.55 3.86
2438 2481 1.861542 TTCAAATTCCAGTGGCGCGG 61.862 55.000 8.83 0.00 0.00 6.46
2457 2500 3.880846 CGGATCGCCAAGGCAAGC 61.881 66.667 12.19 0.00 42.06 4.01
2484 2527 2.513897 GGTTCGGATTGAGCGGGG 60.514 66.667 0.00 0.00 0.00 5.73
2486 2529 3.399181 TTCGGATTGAGCGGGGCT 61.399 61.111 0.00 0.00 43.88 5.19
2497 2540 2.364317 CGGGGCTCTCTGGAAGGA 60.364 66.667 0.00 0.00 0.00 3.36
2503 2546 1.034838 GCTCTCTGGAAGGAGCGAGA 61.035 60.000 0.00 0.00 43.66 4.04
2505 2548 1.134175 CTCTCTGGAAGGAGCGAGAAC 59.866 57.143 0.00 0.00 32.65 3.01
2506 2549 0.174617 CTCTGGAAGGAGCGAGAACC 59.825 60.000 0.00 0.00 0.00 3.62
2508 2551 1.535444 TGGAAGGAGCGAGAACCCA 60.535 57.895 0.00 0.00 0.00 4.51
2511 2554 1.229209 AAGGAGCGAGAACCCAGGA 60.229 57.895 0.00 0.00 0.00 3.86
2512 2555 1.261238 AAGGAGCGAGAACCCAGGAG 61.261 60.000 0.00 0.00 0.00 3.69
2522 2565 2.852449 AGAACCCAGGAGCCAATCATTA 59.148 45.455 0.00 0.00 0.00 1.90
2523 2566 3.464833 AGAACCCAGGAGCCAATCATTAT 59.535 43.478 0.00 0.00 0.00 1.28
2529 2572 2.444388 AGGAGCCAATCATTATGCAGGA 59.556 45.455 0.00 0.00 0.00 3.86
2533 2576 4.079970 AGCCAATCATTATGCAGGATGAG 58.920 43.478 16.80 7.72 39.69 2.90
2541 2584 1.703014 ATGCAGGATGAGCGGATGGT 61.703 55.000 0.00 0.00 39.69 3.55
2542 2585 1.153086 GCAGGATGAGCGGATGGTT 60.153 57.895 0.00 0.00 39.69 3.67
2544 2587 1.475034 GCAGGATGAGCGGATGGTTAA 60.475 52.381 0.00 0.00 39.69 2.01
2545 2588 2.811873 GCAGGATGAGCGGATGGTTAAT 60.812 50.000 0.00 0.00 39.69 1.40
2548 2591 3.136443 AGGATGAGCGGATGGTTAATCAA 59.864 43.478 0.00 0.00 36.98 2.57
2550 2593 3.627395 TGAGCGGATGGTTAATCAAGT 57.373 42.857 0.00 0.00 36.98 3.16
2551 2594 3.270027 TGAGCGGATGGTTAATCAAGTG 58.730 45.455 0.00 0.00 36.98 3.16
2560 2603 5.999205 TGGTTAATCAAGTGCCAATCATT 57.001 34.783 0.00 0.00 0.00 2.57
2561 2604 5.722263 TGGTTAATCAAGTGCCAATCATTG 58.278 37.500 0.00 0.00 0.00 2.82
2562 2605 4.567959 GGTTAATCAAGTGCCAATCATTGC 59.432 41.667 0.00 0.00 0.00 3.56
2563 2606 2.572191 ATCAAGTGCCAATCATTGCG 57.428 45.000 0.00 0.00 0.00 4.85
2565 2608 0.388778 CAAGTGCCAATCATTGCGCA 60.389 50.000 5.66 5.66 40.37 6.09
2566 2609 0.108992 AAGTGCCAATCATTGCGCAG 60.109 50.000 11.31 0.00 40.37 5.18
2569 2612 2.278336 CCAATCATTGCGCAGGCG 60.278 61.111 11.31 9.68 44.10 5.52
2571 2614 2.751436 AATCATTGCGCAGGCGGT 60.751 55.556 11.31 0.00 44.10 5.68
2572 2615 3.055080 AATCATTGCGCAGGCGGTG 62.055 57.895 11.31 6.34 44.10 4.94
2587 2630 1.598130 GGTGCGCTTGGACAAGACT 60.598 57.895 15.76 0.00 40.79 3.24
2588 2631 1.571460 GTGCGCTTGGACAAGACTG 59.429 57.895 15.76 5.78 40.79 3.51
2592 2635 1.301716 GCTTGGACAAGACTGCGGA 60.302 57.895 15.76 0.00 40.79 5.54
2607 2650 2.663196 GGAGGAGACCGTTGGTGG 59.337 66.667 0.00 0.00 35.25 4.61
2620 2663 2.122989 GGTGGGCCCGAGGAGATA 60.123 66.667 19.37 0.00 0.00 1.98
2621 2664 1.764854 GGTGGGCCCGAGGAGATAA 60.765 63.158 19.37 0.00 0.00 1.75
2624 2667 2.744377 GGCCCGAGGAGATAAGGC 59.256 66.667 0.00 0.00 43.09 4.35
2639 2682 3.391382 GGCTACAGGCTGTCCGGT 61.391 66.667 25.80 0.79 43.31 5.28
2652 2695 3.550431 CCGGTCGGCCAGGATCAT 61.550 66.667 6.96 0.00 32.59 2.45
2660 2703 2.182842 GCCAGGATCATGGACGTGC 61.183 63.158 29.91 10.12 43.57 5.34
2661 2704 1.524621 CCAGGATCATGGACGTGCC 60.525 63.158 21.94 0.43 43.57 5.01
2662 2705 1.524002 CAGGATCATGGACGTGCCT 59.476 57.895 4.04 0.00 37.63 4.75
2663 2706 0.107508 CAGGATCATGGACGTGCCTT 60.108 55.000 4.04 0.00 37.63 4.35
2664 2707 0.620556 AGGATCATGGACGTGCCTTT 59.379 50.000 4.04 0.00 37.63 3.11
2665 2708 0.734889 GGATCATGGACGTGCCTTTG 59.265 55.000 4.04 0.00 37.63 2.77
2666 2709 0.734889 GATCATGGACGTGCCTTTGG 59.265 55.000 4.04 0.00 37.63 3.28
2667 2710 0.038166 ATCATGGACGTGCCTTTGGT 59.962 50.000 4.04 0.00 37.63 3.67
2668 2711 0.179004 TCATGGACGTGCCTTTGGTT 60.179 50.000 4.04 0.00 37.63 3.67
2669 2712 0.673437 CATGGACGTGCCTTTGGTTT 59.327 50.000 4.04 0.00 37.63 3.27
2670 2713 0.673437 ATGGACGTGCCTTTGGTTTG 59.327 50.000 4.04 0.00 37.63 2.93
2671 2714 0.681564 TGGACGTGCCTTTGGTTTGT 60.682 50.000 4.04 0.00 37.63 2.83
2672 2715 0.458260 GGACGTGCCTTTGGTTTGTT 59.542 50.000 0.00 0.00 0.00 2.83
2673 2716 1.535226 GGACGTGCCTTTGGTTTGTTC 60.535 52.381 0.00 0.00 0.00 3.18
2674 2717 1.404035 GACGTGCCTTTGGTTTGTTCT 59.596 47.619 0.00 0.00 0.00 3.01
2675 2718 1.822371 ACGTGCCTTTGGTTTGTTCTT 59.178 42.857 0.00 0.00 0.00 2.52
2676 2719 2.232696 ACGTGCCTTTGGTTTGTTCTTT 59.767 40.909 0.00 0.00 0.00 2.52
2677 2720 3.258228 CGTGCCTTTGGTTTGTTCTTTT 58.742 40.909 0.00 0.00 0.00 2.27
2678 2721 3.061965 CGTGCCTTTGGTTTGTTCTTTTG 59.938 43.478 0.00 0.00 0.00 2.44
2679 2722 4.249661 GTGCCTTTGGTTTGTTCTTTTGA 58.750 39.130 0.00 0.00 0.00 2.69
2680 2723 4.329801 GTGCCTTTGGTTTGTTCTTTTGAG 59.670 41.667 0.00 0.00 0.00 3.02
2681 2724 3.871006 GCCTTTGGTTTGTTCTTTTGAGG 59.129 43.478 0.00 0.00 0.00 3.86
2682 2725 4.441792 CCTTTGGTTTGTTCTTTTGAGGG 58.558 43.478 0.00 0.00 0.00 4.30
2683 2726 4.161377 CCTTTGGTTTGTTCTTTTGAGGGA 59.839 41.667 0.00 0.00 0.00 4.20
2684 2727 5.163311 CCTTTGGTTTGTTCTTTTGAGGGAT 60.163 40.000 0.00 0.00 0.00 3.85
2685 2728 5.529581 TTGGTTTGTTCTTTTGAGGGATC 57.470 39.130 0.00 0.00 0.00 3.36
2686 2729 3.568007 TGGTTTGTTCTTTTGAGGGATCG 59.432 43.478 0.00 0.00 0.00 3.69
2687 2730 3.565516 GTTTGTTCTTTTGAGGGATCGC 58.434 45.455 0.54 0.54 0.00 4.58
2688 2731 1.821216 TGTTCTTTTGAGGGATCGCC 58.179 50.000 6.09 0.00 0.00 5.54
2689 2732 1.073125 TGTTCTTTTGAGGGATCGCCA 59.927 47.619 6.09 1.58 35.15 5.69
2690 2733 1.740025 GTTCTTTTGAGGGATCGCCAG 59.260 52.381 6.09 0.00 35.15 4.85
2691 2734 0.392998 TCTTTTGAGGGATCGCCAGC 60.393 55.000 6.09 0.00 35.15 4.85
2692 2735 0.393537 CTTTTGAGGGATCGCCAGCT 60.394 55.000 6.09 0.00 35.15 4.24
2693 2736 0.677731 TTTTGAGGGATCGCCAGCTG 60.678 55.000 6.78 6.78 35.15 4.24
2694 2737 1.841302 TTTGAGGGATCGCCAGCTGT 61.841 55.000 13.81 0.00 35.15 4.40
2695 2738 2.107953 GAGGGATCGCCAGCTGTC 59.892 66.667 13.81 0.00 35.15 3.51
2696 2739 3.781770 GAGGGATCGCCAGCTGTCG 62.782 68.421 11.62 11.62 35.15 4.35
2725 2768 4.344865 CCCAACACCCCACCCGAG 62.345 72.222 0.00 0.00 0.00 4.63
2726 2769 4.344865 CCAACACCCCACCCGAGG 62.345 72.222 0.00 0.00 0.00 4.63
2745 2788 4.394712 GCCGGTGGGACCAGAGTG 62.395 72.222 1.90 0.00 38.47 3.51
2746 2789 4.394712 CCGGTGGGACCAGAGTGC 62.395 72.222 0.00 0.00 38.47 4.40
2747 2790 3.625897 CGGTGGGACCAGAGTGCA 61.626 66.667 0.00 0.00 38.47 4.57
2748 2791 2.032681 GGTGGGACCAGAGTGCAC 59.967 66.667 9.40 9.40 38.42 4.57
2749 2792 2.357517 GTGGGACCAGAGTGCACG 60.358 66.667 12.01 0.00 35.71 5.34
2750 2793 3.625897 TGGGACCAGAGTGCACGG 61.626 66.667 12.01 9.55 35.71 4.94
2751 2794 3.626924 GGGACCAGAGTGCACGGT 61.627 66.667 13.93 13.93 35.71 4.83
2752 2795 2.280552 GGGACCAGAGTGCACGGTA 61.281 63.158 14.01 0.00 35.71 4.02
2753 2796 1.215647 GGACCAGAGTGCACGGTAG 59.784 63.158 14.01 6.66 33.83 3.18
2754 2797 1.248785 GGACCAGAGTGCACGGTAGA 61.249 60.000 14.01 0.00 33.83 2.59
2755 2798 0.109226 GACCAGAGTGCACGGTAGAC 60.109 60.000 14.01 0.26 31.63 2.59
2756 2799 0.826256 ACCAGAGTGCACGGTAGACA 60.826 55.000 12.60 0.00 0.00 3.41
2757 2800 0.388649 CCAGAGTGCACGGTAGACAC 60.389 60.000 12.01 1.17 34.48 3.67
2758 2801 0.729478 CAGAGTGCACGGTAGACACG 60.729 60.000 12.01 0.00 39.31 4.49
2759 2802 1.443872 GAGTGCACGGTAGACACGG 60.444 63.158 12.01 0.00 39.31 4.94
2760 2803 1.859427 GAGTGCACGGTAGACACGGA 61.859 60.000 12.01 0.00 39.31 4.69
2761 2804 1.214589 GTGCACGGTAGACACGGAT 59.785 57.895 0.00 0.00 35.23 4.18
2762 2805 1.076533 GTGCACGGTAGACACGGATG 61.077 60.000 0.00 0.00 35.23 3.51
2763 2806 1.518572 GCACGGTAGACACGGATGG 60.519 63.158 0.00 0.00 35.23 3.51
2764 2807 1.888018 CACGGTAGACACGGATGGT 59.112 57.895 0.00 0.00 35.23 3.55
2774 2817 2.197792 CACGGATGGTGCAATGATTG 57.802 50.000 0.00 0.00 40.33 2.67
2775 2818 1.473677 CACGGATGGTGCAATGATTGT 59.526 47.619 7.05 0.00 40.33 2.71
2776 2819 1.473677 ACGGATGGTGCAATGATTGTG 59.526 47.619 7.05 0.00 0.00 3.33
2777 2820 1.744522 CGGATGGTGCAATGATTGTGA 59.255 47.619 7.05 0.00 0.00 3.58
2778 2821 2.223409 CGGATGGTGCAATGATTGTGAG 60.223 50.000 7.05 0.00 0.00 3.51
2779 2822 2.100252 GGATGGTGCAATGATTGTGAGG 59.900 50.000 7.05 0.00 0.00 3.86
2780 2823 1.548081 TGGTGCAATGATTGTGAGGG 58.452 50.000 7.05 0.00 0.00 4.30
2781 2824 0.174162 GGTGCAATGATTGTGAGGGC 59.826 55.000 7.05 0.00 0.00 5.19
2782 2825 0.179156 GTGCAATGATTGTGAGGGCG 60.179 55.000 7.05 0.00 0.00 6.13
2783 2826 1.314534 TGCAATGATTGTGAGGGCGG 61.315 55.000 7.05 0.00 0.00 6.13
2784 2827 1.315257 GCAATGATTGTGAGGGCGGT 61.315 55.000 7.05 0.00 0.00 5.68
2785 2828 0.452987 CAATGATTGTGAGGGCGGTG 59.547 55.000 0.00 0.00 0.00 4.94
2786 2829 0.327924 AATGATTGTGAGGGCGGTGA 59.672 50.000 0.00 0.00 0.00 4.02
2787 2830 0.327924 ATGATTGTGAGGGCGGTGAA 59.672 50.000 0.00 0.00 0.00 3.18
2788 2831 0.605319 TGATTGTGAGGGCGGTGAAC 60.605 55.000 0.00 0.00 0.00 3.18
2789 2832 1.303317 ATTGTGAGGGCGGTGAACC 60.303 57.895 0.00 0.00 0.00 3.62
2790 2833 2.063015 ATTGTGAGGGCGGTGAACCA 62.063 55.000 0.00 0.00 35.14 3.67
2791 2834 2.668550 GTGAGGGCGGTGAACCAC 60.669 66.667 0.00 0.00 35.14 4.16
2792 2835 3.164977 TGAGGGCGGTGAACCACA 61.165 61.111 0.00 0.00 35.86 4.17
2793 2836 2.351276 GAGGGCGGTGAACCACAT 59.649 61.111 0.00 0.00 35.86 3.21
2794 2837 2.034066 AGGGCGGTGAACCACATG 59.966 61.111 0.00 0.00 35.86 3.21
2795 2838 3.747976 GGGCGGTGAACCACATGC 61.748 66.667 0.00 0.00 35.86 4.06
2796 2839 4.101790 GGCGGTGAACCACATGCG 62.102 66.667 0.00 0.00 37.87 4.73
2797 2840 3.353836 GCGGTGAACCACATGCGT 61.354 61.111 0.00 0.00 35.86 5.24
2798 2841 2.030401 GCGGTGAACCACATGCGTA 61.030 57.895 0.00 0.00 35.86 4.42
2799 2842 1.366111 GCGGTGAACCACATGCGTAT 61.366 55.000 0.00 0.00 35.86 3.06
2800 2843 1.083489 CGGTGAACCACATGCGTATT 58.917 50.000 0.00 0.00 35.86 1.89
2801 2844 1.202020 CGGTGAACCACATGCGTATTG 60.202 52.381 0.00 0.00 35.86 1.90
2802 2845 1.132262 GGTGAACCACATGCGTATTGG 59.868 52.381 11.23 11.23 35.86 3.16
2803 2846 1.132262 GTGAACCACATGCGTATTGGG 59.868 52.381 15.23 8.55 34.41 4.12
2804 2847 0.100503 GAACCACATGCGTATTGGGC 59.899 55.000 15.23 6.78 34.41 5.36
2805 2848 1.319614 AACCACATGCGTATTGGGCC 61.320 55.000 15.23 0.00 34.41 5.80
2806 2849 2.489275 CCACATGCGTATTGGGCCC 61.489 63.158 17.59 17.59 0.00 5.80
2807 2850 2.515991 ACATGCGTATTGGGCCCG 60.516 61.111 19.37 5.50 0.00 6.13
2808 2851 2.515991 CATGCGTATTGGGCCCGT 60.516 61.111 19.37 11.40 0.00 5.28
2809 2852 2.515991 ATGCGTATTGGGCCCGTG 60.516 61.111 19.37 5.69 0.00 4.94
2836 2879 3.928779 TCGGATCCGATGCTGGCC 61.929 66.667 32.59 0.00 44.01 5.36
2837 2880 4.996434 CGGATCCGATGCTGGCCC 62.996 72.222 30.62 0.00 42.83 5.80
2838 2881 4.650377 GGATCCGATGCTGGCCCC 62.650 72.222 0.00 0.00 0.00 5.80
2839 2882 3.877450 GATCCGATGCTGGCCCCA 61.877 66.667 0.00 0.00 0.00 4.96
2840 2883 4.195334 ATCCGATGCTGGCCCCAC 62.195 66.667 0.00 0.00 0.00 4.61
2844 2887 4.828296 GATGCTGGCCCCACCTGG 62.828 72.222 0.00 0.00 40.22 4.45
2854 2897 2.503061 CCACCTGGGCAGATCGAG 59.497 66.667 0.00 0.00 0.00 4.04
2855 2898 2.503061 CACCTGGGCAGATCGAGG 59.497 66.667 0.00 0.00 38.41 4.63
2856 2899 2.060383 CACCTGGGCAGATCGAGGA 61.060 63.158 0.00 0.00 36.34 3.71
2857 2900 1.760086 ACCTGGGCAGATCGAGGAG 60.760 63.158 0.00 0.00 36.34 3.69
2858 2901 2.420890 CTGGGCAGATCGAGGAGC 59.579 66.667 0.00 0.00 0.00 4.70
2859 2902 2.364186 TGGGCAGATCGAGGAGCA 60.364 61.111 7.84 0.00 0.00 4.26
2860 2903 2.366480 CTGGGCAGATCGAGGAGCAG 62.366 65.000 7.84 0.00 0.00 4.24
2861 2904 2.420890 GGCAGATCGAGGAGCAGG 59.579 66.667 7.84 0.00 0.00 4.85
2862 2905 2.280052 GCAGATCGAGGAGCAGGC 60.280 66.667 0.00 0.00 0.00 4.85
2863 2906 2.027314 CAGATCGAGGAGCAGGCG 59.973 66.667 0.00 0.00 0.00 5.52
2864 2907 2.124109 AGATCGAGGAGCAGGCGA 60.124 61.111 0.00 0.00 38.51 5.54
2865 2908 1.530419 AGATCGAGGAGCAGGCGAT 60.530 57.895 0.00 0.00 46.22 4.58
2866 2909 1.372748 GATCGAGGAGCAGGCGATG 60.373 63.158 0.00 0.00 43.91 3.84
2876 2919 4.704833 AGGCGATGCGTGCTGGTT 62.705 61.111 0.00 0.00 0.00 3.67
2877 2920 3.737172 GGCGATGCGTGCTGGTTT 61.737 61.111 0.00 0.00 0.00 3.27
2878 2921 2.502510 GCGATGCGTGCTGGTTTG 60.503 61.111 0.00 0.00 0.00 2.93
2879 2922 2.176546 CGATGCGTGCTGGTTTGG 59.823 61.111 0.00 0.00 0.00 3.28
2880 2923 2.126346 GATGCGTGCTGGTTTGGC 60.126 61.111 0.00 0.00 0.00 4.52
2881 2924 3.631487 GATGCGTGCTGGTTTGGCC 62.631 63.158 0.00 0.00 37.90 5.36
2884 2927 3.726517 CGTGCTGGTTTGGCCGAG 61.727 66.667 0.00 0.00 41.21 4.63
2885 2928 2.281484 GTGCTGGTTTGGCCGAGA 60.281 61.111 0.00 0.00 41.21 4.04
2886 2929 2.281484 TGCTGGTTTGGCCGAGAC 60.281 61.111 0.00 0.00 41.21 3.36
2887 2930 2.281484 GCTGGTTTGGCCGAGACA 60.281 61.111 0.00 0.00 41.21 3.41
2888 2931 2.328099 GCTGGTTTGGCCGAGACAG 61.328 63.158 17.48 17.48 41.21 3.51
2889 2932 1.672356 CTGGTTTGGCCGAGACAGG 60.672 63.158 15.07 0.88 41.21 4.00
2890 2933 2.397413 CTGGTTTGGCCGAGACAGGT 62.397 60.000 15.07 0.00 41.21 4.00
2891 2934 1.966451 GGTTTGGCCGAGACAGGTG 60.966 63.158 0.00 0.00 0.00 4.00
2892 2935 2.281484 TTTGGCCGAGACAGGTGC 60.281 61.111 0.00 0.00 0.00 5.01
2893 2936 3.113514 TTTGGCCGAGACAGGTGCA 62.114 57.895 0.00 0.00 0.00 4.57
2894 2937 3.825160 TTGGCCGAGACAGGTGCAC 62.825 63.158 8.80 8.80 0.00 4.57
2895 2938 4.008933 GGCCGAGACAGGTGCACT 62.009 66.667 17.98 0.00 0.00 4.40
2903 2946 4.069869 CAGGTGCACTGTCCAAGG 57.930 61.111 17.98 0.00 42.42 3.61
2904 2947 1.149174 CAGGTGCACTGTCCAAGGT 59.851 57.895 17.98 0.00 42.42 3.50
2905 2948 1.149174 AGGTGCACTGTCCAAGGTG 59.851 57.895 17.98 0.00 36.62 4.00
2906 2949 1.898574 GGTGCACTGTCCAAGGTGG 60.899 63.158 17.98 0.00 39.43 4.61
2907 2950 1.148273 GTGCACTGTCCAAGGTGGA 59.852 57.895 10.32 0.00 45.98 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.550914 TCTTGAGCACTGGGTTGGTT 59.449 50.000 0.00 0.00 0.00 3.67
1 2 0.109342 CTCTTGAGCACTGGGTTGGT 59.891 55.000 0.00 0.00 0.00 3.67
2 3 0.607489 CCTCTTGAGCACTGGGTTGG 60.607 60.000 0.00 0.00 0.00 3.77
3 4 0.109342 ACCTCTTGAGCACTGGGTTG 59.891 55.000 0.00 0.00 0.00 3.77
5 6 1.270907 CTACCTCTTGAGCACTGGGT 58.729 55.000 0.00 0.00 0.00 4.51
6 7 0.107945 GCTACCTCTTGAGCACTGGG 60.108 60.000 0.00 0.00 38.62 4.45
7 8 0.610174 TGCTACCTCTTGAGCACTGG 59.390 55.000 0.00 0.00 43.64 4.00
8 9 2.006056 GCTGCTACCTCTTGAGCACTG 61.006 57.143 0.00 0.00 43.64 3.66
11 12 1.216444 CGCTGCTACCTCTTGAGCA 59.784 57.895 0.00 0.00 46.24 4.26
14 15 1.824852 TGAATCGCTGCTACCTCTTGA 59.175 47.619 0.00 0.00 0.00 3.02
15 16 2.299993 TGAATCGCTGCTACCTCTTG 57.700 50.000 0.00 0.00 0.00 3.02
17 18 2.224161 GGAATGAATCGCTGCTACCTCT 60.224 50.000 0.00 0.00 0.00 3.69
18 19 2.139118 GGAATGAATCGCTGCTACCTC 58.861 52.381 0.00 0.00 0.00 3.85
19 20 1.765314 AGGAATGAATCGCTGCTACCT 59.235 47.619 0.00 0.00 0.00 3.08
20 21 2.246719 AGGAATGAATCGCTGCTACC 57.753 50.000 0.00 0.00 0.00 3.18
21 22 4.811557 AGTTTAGGAATGAATCGCTGCTAC 59.188 41.667 0.00 0.00 0.00 3.58
22 23 5.023533 AGTTTAGGAATGAATCGCTGCTA 57.976 39.130 0.00 0.00 0.00 3.49
23 24 3.878778 AGTTTAGGAATGAATCGCTGCT 58.121 40.909 0.00 0.00 0.00 4.24
24 25 4.346129 CAAGTTTAGGAATGAATCGCTGC 58.654 43.478 0.00 0.00 0.00 5.25
25 26 4.396166 ACCAAGTTTAGGAATGAATCGCTG 59.604 41.667 0.00 0.00 0.00 5.18
26 27 4.589908 ACCAAGTTTAGGAATGAATCGCT 58.410 39.130 0.00 0.00 0.00 4.93
30 31 7.451255 TCATCACAACCAAGTTTAGGAATGAAT 59.549 33.333 0.00 0.00 0.00 2.57
47 48 4.756642 TCAATTGACAGTCCTCATCACAAC 59.243 41.667 3.38 0.00 0.00 3.32
121 122 2.297701 TCCAAGAGAAAGTGCAACACC 58.702 47.619 0.00 0.00 41.43 4.16
191 192 9.686683 ATCACTTTAAATATGAGGTTGCTTACT 57.313 29.630 7.97 0.00 0.00 2.24
217 218 5.345702 GCAAAGCATGATAGCTCAATTTCA 58.654 37.500 0.00 0.00 45.89 2.69
218 219 4.440103 CGCAAAGCATGATAGCTCAATTTC 59.560 41.667 0.00 0.00 45.89 2.17
219 220 4.142315 ACGCAAAGCATGATAGCTCAATTT 60.142 37.500 0.00 0.00 45.89 1.82
220 221 3.379372 ACGCAAAGCATGATAGCTCAATT 59.621 39.130 0.00 0.00 45.89 2.32
221 222 2.947652 ACGCAAAGCATGATAGCTCAAT 59.052 40.909 0.00 0.00 45.89 2.57
222 223 2.096335 CACGCAAAGCATGATAGCTCAA 59.904 45.455 0.00 0.00 45.89 3.02
223 224 1.667212 CACGCAAAGCATGATAGCTCA 59.333 47.619 0.00 0.00 45.89 4.26
224 225 1.003116 CCACGCAAAGCATGATAGCTC 60.003 52.381 0.00 0.00 45.89 4.09
234 235 3.764885 ATCTAATTCACCACGCAAAGC 57.235 42.857 0.00 0.00 0.00 3.51
324 325 8.344098 CAATTTTCAAATCAAGCTTGCCTAAAA 58.656 29.630 21.99 19.69 0.00 1.52
330 331 5.905181 CACACAATTTTCAAATCAAGCTTGC 59.095 36.000 21.99 0.00 0.00 4.01
340 341 8.474025 ACAATAGAACTCCACACAATTTTCAAA 58.526 29.630 0.00 0.00 0.00 2.69
341 342 8.006298 ACAATAGAACTCCACACAATTTTCAA 57.994 30.769 0.00 0.00 0.00 2.69
351 352 9.616156 TTGTAGTAAAAACAATAGAACTCCACA 57.384 29.630 0.00 0.00 32.07 4.17
365 366 8.933807 GGAGACCTATCACTTTGTAGTAAAAAC 58.066 37.037 0.00 0.00 31.96 2.43
372 373 5.583495 CGAAGGAGACCTATCACTTTGTAG 58.417 45.833 0.00 0.00 31.13 2.74
392 393 8.723311 CATACTTGTAATTGGAAACTTACCGAA 58.277 33.333 0.00 0.00 0.00 4.30
395 396 8.182227 GCTCATACTTGTAATTGGAAACTTACC 58.818 37.037 0.00 0.00 0.00 2.85
434 435 6.094186 GGACATGGTAGAGAATGAAAGTTTCC 59.906 42.308 13.01 0.00 0.00 3.13
476 477 7.331687 CGTTCCATTTTTATTGCTCCTCAAAAT 59.668 33.333 0.00 0.00 38.34 1.82
489 490 8.567285 AGACAGAAAGATCGTTCCATTTTTAT 57.433 30.769 16.46 0.00 0.00 1.40
490 491 7.979444 AGACAGAAAGATCGTTCCATTTTTA 57.021 32.000 16.46 0.00 0.00 1.52
510 511 3.329225 TGTGGAATGGTGGTCAATAGACA 59.671 43.478 0.00 0.00 46.80 3.41
511 512 3.950397 TGTGGAATGGTGGTCAATAGAC 58.050 45.455 0.00 0.00 44.21 2.59
633 634 4.019174 CTCTTGCTTCTCTCTCTCTCCTT 58.981 47.826 0.00 0.00 0.00 3.36
634 635 3.624777 CTCTTGCTTCTCTCTCTCTCCT 58.375 50.000 0.00 0.00 0.00 3.69
635 636 2.099756 GCTCTTGCTTCTCTCTCTCTCC 59.900 54.545 0.00 0.00 36.03 3.71
636 637 2.223340 CGCTCTTGCTTCTCTCTCTCTC 60.223 54.545 0.00 0.00 36.97 3.20
637 638 1.745087 CGCTCTTGCTTCTCTCTCTCT 59.255 52.381 0.00 0.00 36.97 3.10
638 639 1.742831 TCGCTCTTGCTTCTCTCTCTC 59.257 52.381 0.00 0.00 36.97 3.20
639 640 1.745087 CTCGCTCTTGCTTCTCTCTCT 59.255 52.381 0.00 0.00 36.97 3.10
640 641 1.472480 ACTCGCTCTTGCTTCTCTCTC 59.528 52.381 0.00 0.00 36.97 3.20
641 642 1.202114 CACTCGCTCTTGCTTCTCTCT 59.798 52.381 0.00 0.00 36.97 3.10
642 643 1.627879 CACTCGCTCTTGCTTCTCTC 58.372 55.000 0.00 0.00 36.97 3.20
643 644 0.246086 CCACTCGCTCTTGCTTCTCT 59.754 55.000 0.00 0.00 36.97 3.10
644 645 0.244994 TCCACTCGCTCTTGCTTCTC 59.755 55.000 0.00 0.00 36.97 2.87
645 646 0.037790 GTCCACTCGCTCTTGCTTCT 60.038 55.000 0.00 0.00 36.97 2.85
646 647 0.319900 TGTCCACTCGCTCTTGCTTC 60.320 55.000 0.00 0.00 36.97 3.86
647 648 0.106708 TTGTCCACTCGCTCTTGCTT 59.893 50.000 0.00 0.00 36.97 3.91
648 649 0.106708 TTTGTCCACTCGCTCTTGCT 59.893 50.000 0.00 0.00 36.97 3.91
649 650 0.944386 TTTTGTCCACTCGCTCTTGC 59.056 50.000 0.00 0.00 0.00 4.01
650 651 2.483876 TCTTTTGTCCACTCGCTCTTG 58.516 47.619 0.00 0.00 0.00 3.02
651 652 2.910688 TCTTTTGTCCACTCGCTCTT 57.089 45.000 0.00 0.00 0.00 2.85
652 653 2.300152 TGATCTTTTGTCCACTCGCTCT 59.700 45.455 0.00 0.00 0.00 4.09
653 654 2.413453 GTGATCTTTTGTCCACTCGCTC 59.587 50.000 0.00 0.00 0.00 5.03
654 655 2.417719 GTGATCTTTTGTCCACTCGCT 58.582 47.619 0.00 0.00 0.00 4.93
655 656 1.464997 GGTGATCTTTTGTCCACTCGC 59.535 52.381 0.00 0.00 0.00 5.03
656 657 2.480419 GTGGTGATCTTTTGTCCACTCG 59.520 50.000 0.00 0.00 43.34 4.18
657 658 2.814336 GGTGGTGATCTTTTGTCCACTC 59.186 50.000 11.48 0.56 45.21 3.51
658 659 2.489073 GGGTGGTGATCTTTTGTCCACT 60.489 50.000 11.48 0.00 45.21 4.00
659 660 1.886542 GGGTGGTGATCTTTTGTCCAC 59.113 52.381 0.00 0.00 45.17 4.02
660 661 1.544537 CGGGTGGTGATCTTTTGTCCA 60.545 52.381 0.00 0.00 0.00 4.02
661 662 1.165270 CGGGTGGTGATCTTTTGTCC 58.835 55.000 0.00 0.00 0.00 4.02
662 663 1.165270 CCGGGTGGTGATCTTTTGTC 58.835 55.000 0.00 0.00 0.00 3.18
663 664 0.768622 TCCGGGTGGTGATCTTTTGT 59.231 50.000 0.00 0.00 36.30 2.83
664 665 1.003118 TCTCCGGGTGGTGATCTTTTG 59.997 52.381 0.00 0.00 32.93 2.44
665 666 1.279271 CTCTCCGGGTGGTGATCTTTT 59.721 52.381 0.00 0.00 37.16 2.27
666 667 0.905357 CTCTCCGGGTGGTGATCTTT 59.095 55.000 0.00 0.00 37.16 2.52
667 668 1.617947 GCTCTCCGGGTGGTGATCTT 61.618 60.000 0.00 0.00 37.16 2.40
668 669 2.060980 GCTCTCCGGGTGGTGATCT 61.061 63.158 0.00 0.00 37.16 2.75
669 670 2.501610 GCTCTCCGGGTGGTGATC 59.498 66.667 0.00 0.00 37.16 2.92
670 671 3.461773 CGCTCTCCGGGTGGTGAT 61.462 66.667 0.00 0.00 37.16 3.06
671 672 4.671590 TCGCTCTCCGGGTGGTGA 62.672 66.667 0.00 0.80 36.39 4.02
672 673 4.135153 CTCGCTCTCCGGGTGGTG 62.135 72.222 0.00 0.00 37.59 4.17
673 674 4.361971 TCTCGCTCTCCGGGTGGT 62.362 66.667 0.00 0.00 38.93 4.16
674 675 3.827898 GTCTCGCTCTCCGGGTGG 61.828 72.222 0.00 0.00 38.93 4.61
675 676 3.827898 GGTCTCGCTCTCCGGGTG 61.828 72.222 0.00 0.00 38.93 4.61
678 679 3.578272 CTCGGTCTCGCTCTCCGG 61.578 72.222 0.00 0.00 43.75 5.14
679 680 4.244802 GCTCGGTCTCGCTCTCCG 62.245 72.222 0.00 0.00 44.76 4.63
680 681 4.244802 CGCTCGGTCTCGCTCTCC 62.245 72.222 0.00 0.00 36.13 3.71
681 682 3.163110 CTCGCTCGGTCTCGCTCTC 62.163 68.421 0.00 0.00 36.13 3.20
682 683 3.199190 CTCGCTCGGTCTCGCTCT 61.199 66.667 0.00 0.00 36.13 4.09
683 684 3.163110 CTCTCGCTCGGTCTCGCTC 62.163 68.421 0.00 0.00 36.13 5.03
684 685 3.199190 CTCTCGCTCGGTCTCGCT 61.199 66.667 0.00 0.00 36.13 4.93
685 686 4.897856 GCTCTCGCTCGGTCTCGC 62.898 72.222 0.00 0.00 36.13 5.03
686 687 4.244802 GGCTCTCGCTCGGTCTCG 62.245 72.222 0.00 0.00 36.09 4.04
687 688 3.894947 GGGCTCTCGCTCGGTCTC 61.895 72.222 0.00 0.00 36.09 3.36
719 720 4.498520 CGCCGGCGTCAGAGTGAT 62.499 66.667 39.71 0.00 34.35 3.06
775 777 2.246126 GGGGAAGGGGATGTGGGTT 61.246 63.158 0.00 0.00 0.00 4.11
835 852 2.295602 GCCTCTACCGGGGGAACAA 61.296 63.158 6.32 0.00 0.00 2.83
847 864 2.124403 GGAGACGACGGGCCTCTA 60.124 66.667 0.84 0.00 0.00 2.43
864 881 3.237741 GAGGAGATCCCCAGGCCG 61.238 72.222 0.00 0.00 36.42 6.13
984 1007 0.106318 GCATCTCTTGCCAGGGGATT 60.106 55.000 0.00 0.00 46.15 3.01
985 1008 1.535685 GCATCTCTTGCCAGGGGAT 59.464 57.895 0.00 0.00 46.15 3.85
986 1009 3.001514 GCATCTCTTGCCAGGGGA 58.998 61.111 0.00 0.00 46.15 4.81
996 1019 0.619832 TCTTGGAGGCAGGCATCTCT 60.620 55.000 5.87 0.00 0.00 3.10
1000 1023 0.034670 GTCTTCTTGGAGGCAGGCAT 60.035 55.000 0.00 0.00 0.00 4.40
1021 1044 1.133809 CCCACCCTCCTCTTCCACAA 61.134 60.000 0.00 0.00 0.00 3.33
1086 1109 2.454336 TCTCCGGCAAGATCTCCTTA 57.546 50.000 0.00 0.00 32.86 2.69
1093 1116 2.109799 CCGCATCTCCGGCAAGAT 59.890 61.111 0.00 0.00 42.03 2.40
1153 1176 1.370778 CGACGTCGTTGGTGCAGTA 60.371 57.895 29.08 0.00 34.11 2.74
1203 1226 2.186160 CCGTTTGCACTGTGAGGCA 61.186 57.895 12.86 0.00 38.46 4.75
1209 1232 3.582120 CGTGGCCGTTTGCACTGT 61.582 61.111 0.00 0.00 43.89 3.55
1262 1285 2.307309 CGAGCAACCTTTGTCGCGA 61.307 57.895 3.71 3.71 34.21 5.87
1267 1290 1.152963 ACCTGCGAGCAACCTTTGT 60.153 52.632 0.00 0.00 0.00 2.83
1275 1298 3.749064 GAGTCCGACCTGCGAGCA 61.749 66.667 0.00 0.00 44.57 4.26
1311 1337 4.489771 CCATGCCTGGACGTCCCC 62.490 72.222 31.19 19.25 46.37 4.81
1315 1341 4.457496 CGAGCCATGCCTGGACGT 62.457 66.667 12.80 0.00 46.37 4.34
1363 1392 1.684734 GGTCAGAGCCCGGGTTAGA 60.685 63.158 24.63 15.17 0.00 2.10
1371 1400 2.359975 CAAACCGGGTCAGAGCCC 60.360 66.667 13.29 5.60 45.21 5.19
1373 1402 3.056328 GCCAAACCGGGTCAGAGC 61.056 66.667 6.32 0.00 34.06 4.09
1374 1403 2.359975 GGCCAAACCGGGTCAGAG 60.360 66.667 6.32 0.00 34.06 3.35
1375 1404 3.172106 TGGCCAAACCGGGTCAGA 61.172 61.111 0.61 0.00 43.94 3.27
1377 1406 3.140073 ATGTGGCCAAACCGGGTCA 62.140 57.895 7.24 0.00 43.94 4.02
1386 1415 2.628696 CGCAGCAAGATGTGGCCAA 61.629 57.895 7.24 0.00 0.00 4.52
1407 1436 0.957395 CAACAGCCATCTCCAAGCGT 60.957 55.000 0.00 0.00 0.00 5.07
1440 1469 3.923864 ACGCACAGCTCCAACGGA 61.924 61.111 0.00 0.00 0.00 4.69
1445 1474 1.005037 CTAACCACGCACAGCTCCA 60.005 57.895 0.00 0.00 0.00 3.86
1461 1490 2.762459 ATGGCGCGGGTTCTCCTA 60.762 61.111 8.83 0.00 0.00 2.94
1467 1496 4.108299 TCATCCATGGCGCGGGTT 62.108 61.111 8.83 0.00 0.00 4.11
1500 1529 1.114722 ACACCACCATGGCCTTGTTG 61.115 55.000 13.04 12.95 42.67 3.33
1501 1530 0.480690 TACACCACCATGGCCTTGTT 59.519 50.000 13.04 0.00 42.67 2.83
1566 1595 2.005451 CCCATCTTGTCTTTCAGAGCG 58.995 52.381 0.00 0.00 0.00 5.03
1594 1623 7.251321 ACTTGTGAACTGAGATTCTATCCTT 57.749 36.000 0.00 0.00 0.00 3.36
1603 1632 3.072184 AGCCAGAACTTGTGAACTGAGAT 59.928 43.478 0.00 0.00 32.90 2.75
1608 1637 1.490490 TCCAGCCAGAACTTGTGAACT 59.510 47.619 0.00 0.00 0.00 3.01
1611 1640 0.397941 CCTCCAGCCAGAACTTGTGA 59.602 55.000 0.00 0.00 0.00 3.58
1647 1676 4.637489 CGATCCTCCTGCCTCGCG 62.637 72.222 0.00 0.00 0.00 5.87
1672 1701 3.849951 CACCGGCCGCCTACTCAT 61.850 66.667 22.85 0.00 0.00 2.90
1704 1733 2.125912 CAGAACGACAGCCTCCGG 60.126 66.667 0.00 0.00 0.00 5.14
1706 1735 2.435059 GCCAGAACGACAGCCTCC 60.435 66.667 0.00 0.00 0.00 4.30
1720 1749 1.405872 GATTGCCTGATCCATTGCCA 58.594 50.000 0.00 0.00 0.00 4.92
1746 1775 4.041917 CGCATGGCCGCAAACACT 62.042 61.111 0.00 0.00 0.00 3.55
1764 1793 0.843309 TGACCAGCCTCACCTTGAAA 59.157 50.000 0.00 0.00 0.00 2.69
1777 1806 0.394565 GGAATCCCCTCGATGACCAG 59.605 60.000 0.00 0.00 32.00 4.00
1800 1829 0.033796 CCTCCAACTCCCATGCATGT 60.034 55.000 24.58 3.69 0.00 3.21
2022 2052 0.818296 ATCAGCGAGTCCAGGTGTAC 59.182 55.000 0.00 0.00 38.18 2.90
2116 2146 0.549902 ACCACCCATGTCCATCTCCA 60.550 55.000 0.00 0.00 0.00 3.86
2141 2171 2.856032 CCGAAGCTCTGCGTGTTG 59.144 61.111 0.00 0.00 0.00 3.33
2277 2316 1.767672 CCCTAGCCAGAGCCATGGA 60.768 63.158 18.40 0.00 43.57 3.41
2287 2326 2.461695 CACTTCTTCTCTCCCTAGCCA 58.538 52.381 0.00 0.00 0.00 4.75
2294 2333 0.035915 GCCCACCACTTCTTCTCTCC 60.036 60.000 0.00 0.00 0.00 3.71
2348 2390 4.043168 CGGTCAAAAGCGGACTGT 57.957 55.556 0.00 0.00 42.53 3.55
2354 2396 0.443869 CAGTGATCCGGTCAAAAGCG 59.556 55.000 0.00 0.00 45.72 4.68
2381 2423 2.136863 CCCCTCCTACTCCTCTGACTA 58.863 57.143 0.00 0.00 0.00 2.59
2382 2424 0.930726 CCCCTCCTACTCCTCTGACT 59.069 60.000 0.00 0.00 0.00 3.41
2384 2426 0.927767 GTCCCCTCCTACTCCTCTGA 59.072 60.000 0.00 0.00 0.00 3.27
2388 2430 1.621822 TCCGTCCCCTCCTACTCCT 60.622 63.158 0.00 0.00 0.00 3.69
2393 2436 2.593978 CGTCTCCGTCCCCTCCTA 59.406 66.667 0.00 0.00 0.00 2.94
2398 2441 2.047560 CAAACCGTCTCCGTCCCC 60.048 66.667 0.00 0.00 0.00 4.81
2400 2443 1.804601 AATTCAAACCGTCTCCGTCC 58.195 50.000 0.00 0.00 0.00 4.79
2422 2465 3.061848 CCCGCGCCACTGGAATTT 61.062 61.111 0.00 0.00 0.00 1.82
2468 2511 3.202706 GCCCCGCTCAATCCGAAC 61.203 66.667 0.00 0.00 0.00 3.95
2479 2522 4.168291 CCTTCCAGAGAGCCCCGC 62.168 72.222 0.00 0.00 0.00 6.13
2486 2529 1.178276 GTTCTCGCTCCTTCCAGAGA 58.822 55.000 0.00 0.00 37.90 3.10
2487 2530 0.174617 GGTTCTCGCTCCTTCCAGAG 59.825 60.000 0.00 0.00 36.92 3.35
2489 2532 1.219393 GGGTTCTCGCTCCTTCCAG 59.781 63.158 0.00 0.00 0.00 3.86
2490 2533 1.535444 TGGGTTCTCGCTCCTTCCA 60.535 57.895 0.00 0.00 0.00 3.53
2491 2534 1.219393 CTGGGTTCTCGCTCCTTCC 59.781 63.158 0.00 0.00 0.00 3.46
2494 2537 1.684049 CTCCTGGGTTCTCGCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
2497 2540 3.394836 GGCTCCTGGGTTCTCGCT 61.395 66.667 0.00 0.00 0.00 4.93
2503 2546 3.569491 CATAATGATTGGCTCCTGGGTT 58.431 45.455 0.00 0.00 0.00 4.11
2505 2548 1.891150 GCATAATGATTGGCTCCTGGG 59.109 52.381 0.00 0.00 0.00 4.45
2506 2549 2.557056 CTGCATAATGATTGGCTCCTGG 59.443 50.000 5.49 0.00 0.00 4.45
2508 2551 2.444388 TCCTGCATAATGATTGGCTCCT 59.556 45.455 5.49 0.00 0.00 3.69
2511 2554 4.079970 CTCATCCTGCATAATGATTGGCT 58.920 43.478 10.57 0.00 31.79 4.75
2512 2555 3.367087 GCTCATCCTGCATAATGATTGGC 60.367 47.826 10.57 7.98 31.79 4.52
2522 2565 1.072678 CCATCCGCTCATCCTGCAT 59.927 57.895 0.00 0.00 0.00 3.96
2523 2566 1.913951 AACCATCCGCTCATCCTGCA 61.914 55.000 0.00 0.00 0.00 4.41
2529 2572 3.879295 CACTTGATTAACCATCCGCTCAT 59.121 43.478 0.00 0.00 0.00 2.90
2533 2576 1.065551 GGCACTTGATTAACCATCCGC 59.934 52.381 0.00 0.00 0.00 5.54
2541 2584 4.422840 CGCAATGATTGGCACTTGATTAA 58.577 39.130 7.35 0.00 0.00 1.40
2542 2585 3.734597 GCGCAATGATTGGCACTTGATTA 60.735 43.478 0.30 0.00 0.00 1.75
2544 2587 1.470285 GCGCAATGATTGGCACTTGAT 60.470 47.619 0.30 0.00 0.00 2.57
2545 2588 0.109179 GCGCAATGATTGGCACTTGA 60.109 50.000 0.30 0.00 0.00 3.02
2548 2591 1.509463 CTGCGCAATGATTGGCACT 59.491 52.632 13.05 0.00 34.62 4.40
2550 2593 2.886610 CCTGCGCAATGATTGGCA 59.113 55.556 13.05 16.53 36.14 4.92
2551 2594 2.584143 GCCTGCGCAATGATTGGC 60.584 61.111 18.70 18.70 34.03 4.52
2569 2612 1.598130 AGTCTTGTCCAAGCGCACC 60.598 57.895 11.47 0.00 38.28 5.01
2571 2614 2.253758 GCAGTCTTGTCCAAGCGCA 61.254 57.895 11.47 0.00 38.28 6.09
2572 2615 2.558313 GCAGTCTTGTCCAAGCGC 59.442 61.111 0.00 0.00 38.28 5.92
2575 2618 0.671781 CCTCCGCAGTCTTGTCCAAG 60.672 60.000 0.47 0.47 39.71 3.61
2576 2619 1.118965 TCCTCCGCAGTCTTGTCCAA 61.119 55.000 0.00 0.00 0.00 3.53
2578 2621 1.216710 CTCCTCCGCAGTCTTGTCC 59.783 63.158 0.00 0.00 0.00 4.02
2582 2625 2.344203 CGGTCTCCTCCGCAGTCTT 61.344 63.158 0.00 0.00 43.96 3.01
2583 2626 2.752238 CGGTCTCCTCCGCAGTCT 60.752 66.667 0.00 0.00 43.96 3.24
2592 2635 3.637273 GCCCACCAACGGTCTCCT 61.637 66.667 0.00 0.00 31.02 3.69
2605 2648 1.459539 CCTTATCTCCTCGGGCCCA 60.460 63.158 24.92 8.28 0.00 5.36
2607 2650 0.542232 TAGCCTTATCTCCTCGGGCC 60.542 60.000 0.00 0.00 43.36 5.80
2620 2663 2.660064 CCGGACAGCCTGTAGCCTT 61.660 63.158 0.00 0.00 45.47 4.35
2621 2664 3.077556 CCGGACAGCCTGTAGCCT 61.078 66.667 0.00 0.00 45.47 4.58
2624 2667 2.490217 CGACCGGACAGCCTGTAG 59.510 66.667 9.46 0.00 31.11 2.74
2639 2682 2.796193 CGTCCATGATCCTGGCCGA 61.796 63.158 14.29 0.00 39.95 5.54
2643 2686 1.524621 GGCACGTCCATGATCCTGG 60.525 63.158 10.60 10.60 37.66 4.45
2646 2689 0.734889 CAAAGGCACGTCCATGATCC 59.265 55.000 0.00 0.00 37.29 3.36
2649 2692 0.179004 AACCAAAGGCACGTCCATGA 60.179 50.000 0.00 0.00 37.29 3.07
2652 2695 0.681564 ACAAACCAAAGGCACGTCCA 60.682 50.000 6.78 0.00 37.29 4.02
2660 2703 4.161377 TCCCTCAAAAGAACAAACCAAAGG 59.839 41.667 0.00 0.00 0.00 3.11
2661 2704 5.337578 TCCCTCAAAAGAACAAACCAAAG 57.662 39.130 0.00 0.00 0.00 2.77
2662 2705 5.451242 CGATCCCTCAAAAGAACAAACCAAA 60.451 40.000 0.00 0.00 0.00 3.28
2663 2706 4.037446 CGATCCCTCAAAAGAACAAACCAA 59.963 41.667 0.00 0.00 0.00 3.67
2664 2707 3.568007 CGATCCCTCAAAAGAACAAACCA 59.432 43.478 0.00 0.00 0.00 3.67
2665 2708 3.611766 GCGATCCCTCAAAAGAACAAACC 60.612 47.826 0.00 0.00 0.00 3.27
2666 2709 3.565516 GCGATCCCTCAAAAGAACAAAC 58.434 45.455 0.00 0.00 0.00 2.93
2667 2710 2.556622 GGCGATCCCTCAAAAGAACAAA 59.443 45.455 0.00 0.00 0.00 2.83
2668 2711 2.159382 GGCGATCCCTCAAAAGAACAA 58.841 47.619 0.00 0.00 0.00 2.83
2669 2712 1.073125 TGGCGATCCCTCAAAAGAACA 59.927 47.619 0.00 0.00 0.00 3.18
2670 2713 1.740025 CTGGCGATCCCTCAAAAGAAC 59.260 52.381 0.00 0.00 0.00 3.01
2671 2714 1.950484 GCTGGCGATCCCTCAAAAGAA 60.950 52.381 0.00 0.00 0.00 2.52
2672 2715 0.392998 GCTGGCGATCCCTCAAAAGA 60.393 55.000 0.00 0.00 0.00 2.52
2673 2716 0.393537 AGCTGGCGATCCCTCAAAAG 60.394 55.000 0.00 0.00 0.00 2.27
2674 2717 0.677731 CAGCTGGCGATCCCTCAAAA 60.678 55.000 5.57 0.00 0.00 2.44
2675 2718 1.078214 CAGCTGGCGATCCCTCAAA 60.078 57.895 5.57 0.00 0.00 2.69
2676 2719 2.244117 GACAGCTGGCGATCCCTCAA 62.244 60.000 19.93 0.00 0.00 3.02
2677 2720 2.685017 ACAGCTGGCGATCCCTCA 60.685 61.111 19.93 0.00 0.00 3.86
2678 2721 2.107953 GACAGCTGGCGATCCCTC 59.892 66.667 19.93 0.00 0.00 4.30
2708 2751 4.344865 CTCGGGTGGGGTGTTGGG 62.345 72.222 0.00 0.00 0.00 4.12
2709 2752 4.344865 CCTCGGGTGGGGTGTTGG 62.345 72.222 0.00 0.00 0.00 3.77
2710 2753 4.344865 CCCTCGGGTGGGGTGTTG 62.345 72.222 0.00 0.00 43.45 3.33
2728 2771 4.394712 CACTCTGGTCCCACCGGC 62.395 72.222 0.00 0.00 44.40 6.13
2729 2772 4.394712 GCACTCTGGTCCCACCGG 62.395 72.222 0.00 0.00 46.14 5.28
2730 2773 3.625897 TGCACTCTGGTCCCACCG 61.626 66.667 0.00 0.00 42.58 4.94
2731 2774 2.032681 GTGCACTCTGGTCCCACC 59.967 66.667 10.32 0.00 39.22 4.61
2732 2775 2.357517 CGTGCACTCTGGTCCCAC 60.358 66.667 16.19 0.00 0.00 4.61
2733 2776 3.625897 CCGTGCACTCTGGTCCCA 61.626 66.667 16.19 0.00 0.00 4.37
2734 2777 2.227089 CTACCGTGCACTCTGGTCCC 62.227 65.000 16.92 0.00 37.20 4.46
2735 2778 1.215647 CTACCGTGCACTCTGGTCC 59.784 63.158 16.92 0.00 37.20 4.46
2736 2779 0.109226 GTCTACCGTGCACTCTGGTC 60.109 60.000 16.92 1.71 37.20 4.02
2737 2780 0.826256 TGTCTACCGTGCACTCTGGT 60.826 55.000 16.19 16.92 39.80 4.00
2738 2781 0.388649 GTGTCTACCGTGCACTCTGG 60.389 60.000 16.19 11.52 0.00 3.86
2739 2782 0.729478 CGTGTCTACCGTGCACTCTG 60.729 60.000 16.19 5.81 0.00 3.35
2740 2783 1.579932 CGTGTCTACCGTGCACTCT 59.420 57.895 16.19 1.55 0.00 3.24
2741 2784 1.443872 CCGTGTCTACCGTGCACTC 60.444 63.158 16.19 0.00 0.00 3.51
2742 2785 1.248785 ATCCGTGTCTACCGTGCACT 61.249 55.000 16.19 0.00 0.00 4.40
2743 2786 1.076533 CATCCGTGTCTACCGTGCAC 61.077 60.000 6.82 6.82 0.00 4.57
2744 2787 1.214325 CATCCGTGTCTACCGTGCA 59.786 57.895 0.00 0.00 0.00 4.57
2745 2788 1.518572 CCATCCGTGTCTACCGTGC 60.519 63.158 0.00 0.00 0.00 5.34
2746 2789 0.457853 CACCATCCGTGTCTACCGTG 60.458 60.000 0.00 0.00 37.73 4.94
2747 2790 1.888018 CACCATCCGTGTCTACCGT 59.112 57.895 0.00 0.00 37.73 4.83
2748 2791 1.518572 GCACCATCCGTGTCTACCG 60.519 63.158 0.00 0.00 44.97 4.02
2749 2792 0.036765 TTGCACCATCCGTGTCTACC 60.037 55.000 0.00 0.00 44.97 3.18
2750 2793 1.665679 CATTGCACCATCCGTGTCTAC 59.334 52.381 0.00 0.00 44.97 2.59
2751 2794 1.552792 TCATTGCACCATCCGTGTCTA 59.447 47.619 0.00 0.00 44.97 2.59
2752 2795 0.324614 TCATTGCACCATCCGTGTCT 59.675 50.000 0.00 0.00 44.97 3.41
2753 2796 1.382522 ATCATTGCACCATCCGTGTC 58.617 50.000 0.00 0.00 44.97 3.67
2754 2797 1.473677 CAATCATTGCACCATCCGTGT 59.526 47.619 0.00 0.00 44.97 4.49
2755 2798 1.473677 ACAATCATTGCACCATCCGTG 59.526 47.619 0.00 0.00 46.03 4.94
2756 2799 1.473677 CACAATCATTGCACCATCCGT 59.526 47.619 0.00 0.00 0.00 4.69
2757 2800 1.744522 TCACAATCATTGCACCATCCG 59.255 47.619 0.00 0.00 0.00 4.18
2758 2801 2.100252 CCTCACAATCATTGCACCATCC 59.900 50.000 0.00 0.00 0.00 3.51
2759 2802 2.100252 CCCTCACAATCATTGCACCATC 59.900 50.000 0.00 0.00 0.00 3.51
2760 2803 2.104967 CCCTCACAATCATTGCACCAT 58.895 47.619 0.00 0.00 0.00 3.55
2761 2804 1.548081 CCCTCACAATCATTGCACCA 58.452 50.000 0.00 0.00 0.00 4.17
2762 2805 0.174162 GCCCTCACAATCATTGCACC 59.826 55.000 0.00 0.00 0.00 5.01
2763 2806 0.179156 CGCCCTCACAATCATTGCAC 60.179 55.000 0.00 0.00 0.00 4.57
2764 2807 1.314534 CCGCCCTCACAATCATTGCA 61.315 55.000 0.00 0.00 0.00 4.08
2765 2808 1.315257 ACCGCCCTCACAATCATTGC 61.315 55.000 0.00 0.00 0.00 3.56
2766 2809 0.452987 CACCGCCCTCACAATCATTG 59.547 55.000 0.00 0.00 0.00 2.82
2767 2810 0.327924 TCACCGCCCTCACAATCATT 59.672 50.000 0.00 0.00 0.00 2.57
2768 2811 0.327924 TTCACCGCCCTCACAATCAT 59.672 50.000 0.00 0.00 0.00 2.45
2769 2812 0.605319 GTTCACCGCCCTCACAATCA 60.605 55.000 0.00 0.00 0.00 2.57
2770 2813 1.305930 GGTTCACCGCCCTCACAATC 61.306 60.000 0.00 0.00 0.00 2.67
2771 2814 1.303317 GGTTCACCGCCCTCACAAT 60.303 57.895 0.00 0.00 0.00 2.71
2772 2815 2.112297 GGTTCACCGCCCTCACAA 59.888 61.111 0.00 0.00 0.00 3.33
2773 2816 3.164977 TGGTTCACCGCCCTCACA 61.165 61.111 0.00 0.00 39.43 3.58
2774 2817 2.668550 GTGGTTCACCGCCCTCAC 60.669 66.667 0.00 0.00 40.56 3.51
2775 2818 2.525124 ATGTGGTTCACCGCCCTCA 61.525 57.895 7.08 0.00 45.66 3.86
2776 2819 2.040544 CATGTGGTTCACCGCCCTC 61.041 63.158 7.08 0.00 45.66 4.30
2777 2820 2.034066 CATGTGGTTCACCGCCCT 59.966 61.111 7.08 0.00 45.66 5.19
2778 2821 3.747976 GCATGTGGTTCACCGCCC 61.748 66.667 7.08 0.00 45.66 6.13
2779 2822 4.101790 CGCATGTGGTTCACCGCC 62.102 66.667 7.08 0.00 45.66 6.13
2780 2823 1.366111 ATACGCATGTGGTTCACCGC 61.366 55.000 11.65 2.31 46.40 5.68
2781 2824 1.083489 AATACGCATGTGGTTCACCG 58.917 50.000 11.65 0.00 39.43 4.94
2782 2825 1.132262 CCAATACGCATGTGGTTCACC 59.868 52.381 11.65 0.00 32.73 4.02
2783 2826 1.132262 CCCAATACGCATGTGGTTCAC 59.868 52.381 11.65 0.00 34.56 3.18
2784 2827 1.458398 CCCAATACGCATGTGGTTCA 58.542 50.000 11.65 0.00 0.00 3.18
2785 2828 0.100503 GCCCAATACGCATGTGGTTC 59.899 55.000 11.65 0.00 0.00 3.62
2786 2829 1.319614 GGCCCAATACGCATGTGGTT 61.320 55.000 11.65 2.27 0.00 3.67
2787 2830 1.752694 GGCCCAATACGCATGTGGT 60.753 57.895 11.65 4.00 0.00 4.16
2788 2831 2.489275 GGGCCCAATACGCATGTGG 61.489 63.158 19.95 1.49 0.00 4.17
2789 2832 2.833533 CGGGCCCAATACGCATGTG 61.834 63.158 24.92 4.30 0.00 3.21
2790 2833 2.515991 CGGGCCCAATACGCATGT 60.516 61.111 24.92 0.00 0.00 3.21
2791 2834 2.515991 ACGGGCCCAATACGCATG 60.516 61.111 24.92 3.98 0.00 4.06
2792 2835 2.515991 CACGGGCCCAATACGCAT 60.516 61.111 24.92 0.00 0.00 4.73
2811 2854 2.842462 TCGGATCCGATGTGGGGG 60.842 66.667 32.59 1.58 44.01 5.40
2820 2863 4.996434 GGGCCAGCATCGGATCCG 62.996 72.222 28.62 28.62 41.35 4.18
2821 2864 4.650377 GGGGCCAGCATCGGATCC 62.650 72.222 4.39 0.00 0.00 3.36
2822 2865 3.877450 TGGGGCCAGCATCGGATC 61.877 66.667 4.39 0.00 0.00 3.36
2823 2866 4.195334 GTGGGGCCAGCATCGGAT 62.195 66.667 4.39 0.00 0.00 4.18
2827 2870 4.828296 CCAGGTGGGGCCAGCATC 62.828 72.222 4.39 0.00 45.79 3.91
2837 2880 2.503061 CTCGATCTGCCCAGGTGG 59.497 66.667 0.00 0.00 37.09 4.61
2838 2881 2.025767 CTCCTCGATCTGCCCAGGTG 62.026 65.000 0.00 0.00 0.00 4.00
2839 2882 1.760086 CTCCTCGATCTGCCCAGGT 60.760 63.158 0.00 0.00 0.00 4.00
2840 2883 3.136750 CTCCTCGATCTGCCCAGG 58.863 66.667 0.00 0.00 0.00 4.45
2841 2884 2.366480 CTGCTCCTCGATCTGCCCAG 62.366 65.000 0.00 0.00 0.00 4.45
2842 2885 2.364186 TGCTCCTCGATCTGCCCA 60.364 61.111 0.00 0.00 0.00 5.36
2843 2886 2.420890 CTGCTCCTCGATCTGCCC 59.579 66.667 0.00 0.00 0.00 5.36
2844 2887 2.420890 CCTGCTCCTCGATCTGCC 59.579 66.667 0.00 0.00 0.00 4.85
2845 2888 2.280052 GCCTGCTCCTCGATCTGC 60.280 66.667 0.00 0.00 0.00 4.26
2846 2889 1.804396 ATCGCCTGCTCCTCGATCTG 61.804 60.000 0.00 0.00 38.40 2.90
2847 2890 1.530419 ATCGCCTGCTCCTCGATCT 60.530 57.895 0.00 0.00 38.40 2.75
2848 2891 1.372748 CATCGCCTGCTCCTCGATC 60.373 63.158 0.00 0.00 40.48 3.69
2849 2892 2.733301 CATCGCCTGCTCCTCGAT 59.267 61.111 0.00 0.00 42.82 3.59
2859 2902 4.704833 AACCAGCACGCATCGCCT 62.705 61.111 0.00 0.00 0.00 5.52
2860 2903 3.737172 AAACCAGCACGCATCGCC 61.737 61.111 0.00 0.00 0.00 5.54
2861 2904 2.502510 CAAACCAGCACGCATCGC 60.503 61.111 0.00 0.00 0.00 4.58
2862 2905 2.176546 CCAAACCAGCACGCATCG 59.823 61.111 0.00 0.00 0.00 3.84
2863 2906 2.126346 GCCAAACCAGCACGCATC 60.126 61.111 0.00 0.00 0.00 3.91
2864 2907 3.683937 GGCCAAACCAGCACGCAT 61.684 61.111 0.00 0.00 38.86 4.73
2867 2910 3.726517 CTCGGCCAAACCAGCACG 61.727 66.667 2.24 0.00 39.03 5.34
2868 2911 2.281484 TCTCGGCCAAACCAGCAC 60.281 61.111 2.24 0.00 39.03 4.40
2869 2912 2.281484 GTCTCGGCCAAACCAGCA 60.281 61.111 2.24 0.00 39.03 4.41
2870 2913 2.281484 TGTCTCGGCCAAACCAGC 60.281 61.111 2.24 0.00 39.03 4.85
2871 2914 1.672356 CCTGTCTCGGCCAAACCAG 60.672 63.158 2.24 2.83 39.03 4.00
2872 2915 2.429930 CCTGTCTCGGCCAAACCA 59.570 61.111 2.24 0.00 39.03 3.67
2873 2916 1.966451 CACCTGTCTCGGCCAAACC 60.966 63.158 2.24 0.00 0.00 3.27
2874 2917 2.617274 GCACCTGTCTCGGCCAAAC 61.617 63.158 2.24 0.00 0.00 2.93
2875 2918 2.281484 GCACCTGTCTCGGCCAAA 60.281 61.111 2.24 0.00 0.00 3.28
2876 2919 3.555324 TGCACCTGTCTCGGCCAA 61.555 61.111 2.24 0.00 0.00 4.52
2877 2920 4.314440 GTGCACCTGTCTCGGCCA 62.314 66.667 5.22 0.00 0.00 5.36
2878 2921 4.008933 AGTGCACCTGTCTCGGCC 62.009 66.667 14.63 0.00 0.00 6.13
2879 2922 2.740055 CAGTGCACCTGTCTCGGC 60.740 66.667 14.63 0.00 36.37 5.54
2887 2930 1.149174 CACCTTGGACAGTGCACCT 59.851 57.895 14.63 0.00 0.00 4.00
2888 2931 1.898574 CCACCTTGGACAGTGCACC 60.899 63.158 14.63 0.00 40.96 5.01
2889 2932 1.148273 TCCACCTTGGACAGTGCAC 59.852 57.895 9.40 9.40 42.67 4.57
2890 2933 3.654021 TCCACCTTGGACAGTGCA 58.346 55.556 0.00 0.00 42.67 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.