Multiple sequence alignment - TraesCS7D01G370800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G370800 chr7D 100.000 2885 0 0 1 2885 479599747 479596863 0.000000e+00 5328.0
1 TraesCS7D01G370800 chr7B 92.074 1577 74 19 648 2191 505370009 505368451 0.000000e+00 2172.0
2 TraesCS7D01G370800 chr7B 89.358 639 53 11 2261 2885 505368452 505367815 0.000000e+00 789.0
3 TraesCS7D01G370800 chr7B 90.073 413 32 5 134 539 551947811 551947401 7.080000e-146 527.0
4 TraesCS7D01G370800 chr7B 89.157 415 36 5 130 537 194116323 194116735 2.560000e-140 508.0
5 TraesCS7D01G370800 chr7A 90.662 1585 95 21 648 2191 515226140 515227712 0.000000e+00 2058.0
6 TraesCS7D01G370800 chr5D 90.799 413 31 5 133 539 510563858 510564269 1.950000e-151 545.0
7 TraesCS7D01G370800 chr6A 90.097 414 33 5 134 540 74975340 74975752 5.470000e-147 531.0
8 TraesCS7D01G370800 chr2D 90.097 414 32 7 134 540 44612078 44611667 1.970000e-146 529.0
9 TraesCS7D01G370800 chr1A 90.000 410 33 5 137 540 481926557 481926150 9.160000e-145 523.0
10 TraesCS7D01G370800 chr2A 89.512 410 37 5 134 539 27369784 27370191 5.510000e-142 514.0
11 TraesCS7D01G370800 chr2A 86.517 89 12 0 2175 2263 59384201 59384289 6.580000e-17 99.0
12 TraesCS7D01G370800 chr1B 89.320 412 37 6 134 540 99141216 99141625 7.130000e-141 510.0
13 TraesCS7D01G370800 chr1B 87.179 78 5 2 2190 2262 120403497 120403574 1.840000e-12 84.2
14 TraesCS7D01G370800 chr1B 77.778 144 11 13 1999 2141 669693547 669693670 5.160000e-08 69.4
15 TraesCS7D01G370800 chr4A 89.021 419 35 9 128 539 191162236 191162650 2.560000e-140 508.0
16 TraesCS7D01G370800 chr4A 94.030 67 4 0 2190 2256 582434098 582434032 5.090000e-18 102.0
17 TraesCS7D01G370800 chr4A 84.706 85 7 5 2184 2262 466633588 466633672 2.380000e-11 80.5
18 TraesCS7D01G370800 chr3D 83.727 381 39 11 1245 1624 7695351 7695709 3.560000e-89 339.0
19 TraesCS7D01G370800 chr3D 77.440 625 92 24 1245 1863 7601141 7600560 7.710000e-86 327.0
20 TraesCS7D01G370800 chr3D 78.153 563 75 26 1081 1610 7604781 7604234 6.000000e-82 315.0
21 TraesCS7D01G370800 chr3D 85.549 173 22 2 1649 1818 7604231 7604059 8.210000e-41 178.0
22 TraesCS7D01G370800 chr3B 77.911 584 84 29 1062 1625 10013954 10014512 3.590000e-84 322.0
23 TraesCS7D01G370800 chr3B 77.694 529 67 26 1126 1625 9931277 9930771 2.830000e-70 276.0
24 TraesCS7D01G370800 chr3B 81.197 234 33 6 1649 1878 10014500 10014726 8.210000e-41 178.0
25 TraesCS7D01G370800 chr3B 80.263 228 31 6 1649 1869 9930783 9930563 2.980000e-35 159.0
26 TraesCS7D01G370800 chr3A 82.723 382 41 13 1245 1624 12744699 12744341 1.670000e-82 316.0
27 TraesCS7D01G370800 chr3A 79.918 244 38 5 1649 1888 12784977 12785213 4.940000e-38 169.0
28 TraesCS7D01G370800 chr3A 89.744 78 6 2 2187 2263 729183855 729183931 6.580000e-17 99.0
29 TraesCS7D01G370800 chr3A 88.095 84 8 2 2187 2269 729577478 729577396 6.580000e-17 99.0
30 TraesCS7D01G370800 chr2B 92.208 77 2 3 2190 2263 394316322 394316397 3.930000e-19 106.0
31 TraesCS7D01G370800 chr4D 86.747 83 7 4 2184 2262 110086574 110086492 3.960000e-14 89.8
32 TraesCS7D01G370800 chr4B 86.905 84 6 4 2184 2262 171617638 171617721 3.960000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G370800 chr7D 479596863 479599747 2884 True 5328.000000 5328 100.000000 1 2885 1 chr7D.!!$R1 2884
1 TraesCS7D01G370800 chr7B 505367815 505370009 2194 True 1480.500000 2172 90.716000 648 2885 2 chr7B.!!$R2 2237
2 TraesCS7D01G370800 chr7A 515226140 515227712 1572 False 2058.000000 2058 90.662000 648 2191 1 chr7A.!!$F1 1543
3 TraesCS7D01G370800 chr3D 7600560 7604781 4221 True 273.333333 327 80.380667 1081 1863 3 chr3D.!!$R1 782
4 TraesCS7D01G370800 chr3B 10013954 10014726 772 False 250.000000 322 79.554000 1062 1878 2 chr3B.!!$F1 816
5 TraesCS7D01G370800 chr3B 9930563 9931277 714 True 217.500000 276 78.978500 1126 1869 2 chr3B.!!$R1 743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 573 0.035317 TGTCTGTGCCACCAAGCTAG 59.965 55.0 0.0 0.0 0.0 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2503 2860 0.028505 TACGAGTTCTATGCGTCGCC 59.971 55.0 15.88 0.0 39.24 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 9.781633 ATAATGGGCTATAGTAGTATAGAGACG 57.218 37.037 23.37 3.36 40.48 4.18
50 51 5.426504 TGGGCTATAGTAGTATAGAGACGC 58.573 45.833 23.37 15.49 40.48 5.19
51 52 4.815846 GGGCTATAGTAGTATAGAGACGCC 59.184 50.000 23.37 17.87 40.48 5.68
52 53 5.396660 GGGCTATAGTAGTATAGAGACGCCT 60.397 48.000 23.37 0.00 40.48 5.52
53 54 6.114767 GGCTATAGTAGTATAGAGACGCCTT 58.885 44.000 23.37 0.00 40.48 4.35
54 55 6.258507 GGCTATAGTAGTATAGAGACGCCTTC 59.741 46.154 23.37 6.65 40.48 3.46
55 56 7.043565 GCTATAGTAGTATAGAGACGCCTTCT 58.956 42.308 23.37 0.00 40.48 2.85
65 66 4.329462 GAGACGCCTTCTCCTCATTATT 57.671 45.455 0.00 0.00 44.74 1.40
66 67 4.054671 GAGACGCCTTCTCCTCATTATTG 58.945 47.826 0.00 0.00 44.74 1.90
67 68 3.134458 GACGCCTTCTCCTCATTATTGG 58.866 50.000 0.00 0.00 0.00 3.16
68 69 2.771943 ACGCCTTCTCCTCATTATTGGA 59.228 45.455 0.00 0.00 0.00 3.53
69 70 3.392616 ACGCCTTCTCCTCATTATTGGAT 59.607 43.478 0.00 0.00 0.00 3.41
70 71 3.750130 CGCCTTCTCCTCATTATTGGATG 59.250 47.826 0.00 0.00 0.00 3.51
71 72 4.723309 GCCTTCTCCTCATTATTGGATGT 58.277 43.478 0.00 0.00 0.00 3.06
72 73 5.136105 GCCTTCTCCTCATTATTGGATGTT 58.864 41.667 0.00 0.00 0.00 2.71
73 74 5.595952 GCCTTCTCCTCATTATTGGATGTTT 59.404 40.000 0.00 0.00 0.00 2.83
74 75 6.097412 GCCTTCTCCTCATTATTGGATGTTTT 59.903 38.462 0.00 0.00 0.00 2.43
75 76 7.364144 GCCTTCTCCTCATTATTGGATGTTTTT 60.364 37.037 0.00 0.00 0.00 1.94
124 125 8.880878 TTCTTTTAAACACCTTCAAATTAGGC 57.119 30.769 0.00 0.00 36.17 3.93
125 126 7.438564 TCTTTTAAACACCTTCAAATTAGGCC 58.561 34.615 0.00 0.00 36.17 5.19
126 127 3.934457 AAACACCTTCAAATTAGGCCG 57.066 42.857 0.00 0.00 36.17 6.13
127 128 2.871096 ACACCTTCAAATTAGGCCGA 57.129 45.000 0.00 0.00 36.17 5.54
128 129 3.366052 ACACCTTCAAATTAGGCCGAT 57.634 42.857 0.00 0.00 36.17 4.18
129 130 4.497291 ACACCTTCAAATTAGGCCGATA 57.503 40.909 0.00 0.00 36.17 2.92
130 131 5.048846 ACACCTTCAAATTAGGCCGATAT 57.951 39.130 0.00 0.00 36.17 1.63
131 132 6.182507 ACACCTTCAAATTAGGCCGATATA 57.817 37.500 0.00 0.00 36.17 0.86
132 133 5.995897 ACACCTTCAAATTAGGCCGATATAC 59.004 40.000 0.00 0.00 36.17 1.47
133 134 5.120208 CACCTTCAAATTAGGCCGATATACG 59.880 44.000 0.00 0.00 36.17 3.06
148 149 6.850071 CGATATACGGAAAATACGAAGGAG 57.150 41.667 0.00 0.00 38.46 3.69
149 150 6.605849 CGATATACGGAAAATACGAAGGAGA 58.394 40.000 0.00 0.00 38.46 3.71
150 151 7.080099 CGATATACGGAAAATACGAAGGAGAA 58.920 38.462 0.00 0.00 38.46 2.87
151 152 7.060403 CGATATACGGAAAATACGAAGGAGAAC 59.940 40.741 0.00 0.00 38.46 3.01
152 153 3.593096 ACGGAAAATACGAAGGAGAACC 58.407 45.455 0.00 0.00 34.93 3.62
153 154 3.260128 ACGGAAAATACGAAGGAGAACCT 59.740 43.478 0.00 0.00 40.64 3.50
154 155 4.858369 ACGGAAAATACGAAGGAGAACCTG 60.858 45.833 0.00 0.00 39.60 4.00
155 156 7.810771 ACGGAAAATACGAAGGAGAACCTGG 62.811 48.000 0.00 0.00 39.60 4.45
165 166 2.173569 AGGAGAACCTGGATATTGGTGC 59.826 50.000 0.00 0.00 45.92 5.01
166 167 2.092429 GGAGAACCTGGATATTGGTGCA 60.092 50.000 0.00 0.00 36.57 4.57
167 168 2.945668 GAGAACCTGGATATTGGTGCAC 59.054 50.000 8.80 8.80 36.57 4.57
168 169 2.024414 GAACCTGGATATTGGTGCACC 58.976 52.381 29.67 29.67 36.57 5.01
169 170 0.258774 ACCTGGATATTGGTGCACCC 59.741 55.000 32.62 16.63 34.90 4.61
170 171 0.552848 CCTGGATATTGGTGCACCCT 59.447 55.000 32.62 21.73 34.29 4.34
171 172 1.774254 CCTGGATATTGGTGCACCCTA 59.226 52.381 32.62 23.13 34.29 3.53
172 173 2.376518 CCTGGATATTGGTGCACCCTAT 59.623 50.000 32.62 26.40 34.29 2.57
173 174 3.587061 CCTGGATATTGGTGCACCCTATA 59.413 47.826 32.62 26.82 35.74 1.31
174 175 4.228210 CCTGGATATTGGTGCACCCTATAT 59.772 45.833 32.62 29.66 42.22 0.86
175 176 5.178096 TGGATATTGGTGCACCCTATATG 57.822 43.478 30.45 0.00 40.41 1.78
176 177 3.947834 GGATATTGGTGCACCCTATATGC 59.052 47.826 30.45 29.14 40.41 3.14
292 293 6.432607 TCAGAGAATGACTTTCATTGCATC 57.567 37.500 6.14 2.67 46.20 3.91
293 294 5.356190 TCAGAGAATGACTTTCATTGCATCC 59.644 40.000 6.14 0.00 46.20 3.51
294 295 5.357314 CAGAGAATGACTTTCATTGCATCCT 59.643 40.000 6.14 0.00 46.20 3.24
295 296 5.357314 AGAGAATGACTTTCATTGCATCCTG 59.643 40.000 6.14 0.00 46.20 3.86
296 297 4.401519 AGAATGACTTTCATTGCATCCTGG 59.598 41.667 6.14 0.00 46.20 4.45
297 298 2.449464 TGACTTTCATTGCATCCTGGG 58.551 47.619 0.00 0.00 0.00 4.45
298 299 2.225091 TGACTTTCATTGCATCCTGGGT 60.225 45.455 0.00 0.00 0.00 4.51
299 300 2.424956 GACTTTCATTGCATCCTGGGTC 59.575 50.000 0.00 0.00 0.00 4.46
300 301 2.225091 ACTTTCATTGCATCCTGGGTCA 60.225 45.455 0.00 0.00 0.00 4.02
301 302 2.601240 TTCATTGCATCCTGGGTCAA 57.399 45.000 0.00 0.00 0.00 3.18
302 303 2.601240 TCATTGCATCCTGGGTCAAA 57.399 45.000 0.00 0.00 0.00 2.69
303 304 2.449464 TCATTGCATCCTGGGTCAAAG 58.551 47.619 0.00 0.00 0.00 2.77
304 305 2.041485 TCATTGCATCCTGGGTCAAAGA 59.959 45.455 0.00 0.00 0.00 2.52
305 306 2.905415 TTGCATCCTGGGTCAAAGAT 57.095 45.000 0.00 0.00 0.00 2.40
306 307 2.905415 TGCATCCTGGGTCAAAGATT 57.095 45.000 0.00 0.00 0.00 2.40
307 308 3.173953 TGCATCCTGGGTCAAAGATTT 57.826 42.857 0.00 0.00 0.00 2.17
308 309 2.827322 TGCATCCTGGGTCAAAGATTTG 59.173 45.455 0.00 0.00 39.48 2.32
309 310 2.167075 GCATCCTGGGTCAAAGATTTGG 59.833 50.000 5.52 0.00 38.66 3.28
310 311 1.923356 TCCTGGGTCAAAGATTTGGC 58.077 50.000 5.52 3.46 41.84 4.52
311 312 1.146774 TCCTGGGTCAAAGATTTGGCA 59.853 47.619 11.64 0.00 44.25 4.92
312 313 1.969923 CCTGGGTCAAAGATTTGGCAA 59.030 47.619 11.64 0.00 44.25 4.52
313 314 2.368221 CCTGGGTCAAAGATTTGGCAAA 59.632 45.455 16.01 16.01 44.25 3.68
314 315 3.181456 CCTGGGTCAAAGATTTGGCAAAA 60.181 43.478 17.70 0.44 44.25 2.44
315 316 4.450053 CTGGGTCAAAGATTTGGCAAAAA 58.550 39.130 17.70 0.00 44.25 1.94
341 342 9.622004 AATGATATGTACAAGTACTATACACGC 57.378 33.333 17.73 12.19 37.00 5.34
342 343 8.387190 TGATATGTACAAGTACTATACACGCT 57.613 34.615 17.73 8.65 37.00 5.07
343 344 9.492973 TGATATGTACAAGTACTATACACGCTA 57.507 33.333 17.73 10.09 37.00 4.26
351 352 8.013947 ACAAGTACTATACACGCTATATTGTCG 58.986 37.037 0.00 0.00 0.00 4.35
352 353 7.664082 AGTACTATACACGCTATATTGTCGT 57.336 36.000 0.00 2.14 36.84 4.34
353 354 7.737395 AGTACTATACACGCTATATTGTCGTC 58.263 38.462 0.00 0.00 33.84 4.20
354 355 6.549912 ACTATACACGCTATATTGTCGTCA 57.450 37.500 4.35 0.00 33.84 4.35
355 356 7.142306 ACTATACACGCTATATTGTCGTCAT 57.858 36.000 4.35 4.50 33.84 3.06
356 357 8.260270 ACTATACACGCTATATTGTCGTCATA 57.740 34.615 4.35 5.14 33.84 2.15
357 358 8.724229 ACTATACACGCTATATTGTCGTCATAA 58.276 33.333 4.35 0.00 33.84 1.90
358 359 9.550811 CTATACACGCTATATTGTCGTCATAAA 57.449 33.333 4.35 0.00 33.84 1.40
359 360 6.506464 ACACGCTATATTGTCGTCATAAAC 57.494 37.500 4.35 0.00 33.84 2.01
360 361 6.270815 ACACGCTATATTGTCGTCATAAACT 58.729 36.000 4.35 0.00 33.84 2.66
361 362 6.755141 ACACGCTATATTGTCGTCATAAACTT 59.245 34.615 4.35 0.00 33.84 2.66
362 363 7.057402 CACGCTATATTGTCGTCATAAACTTG 58.943 38.462 4.35 0.00 33.84 3.16
363 364 6.755141 ACGCTATATTGTCGTCATAAACTTGT 59.245 34.615 2.14 0.00 0.00 3.16
364 365 7.043590 ACGCTATATTGTCGTCATAAACTTGTC 60.044 37.037 2.14 0.00 0.00 3.18
365 366 7.167635 CGCTATATTGTCGTCATAAACTTGTCT 59.832 37.037 0.00 0.00 0.00 3.41
366 367 8.818057 GCTATATTGTCGTCATAAACTTGTCTT 58.182 33.333 0.00 0.00 0.00 3.01
388 389 5.697473 TTTTTGCCGTGAAGTCAATATGA 57.303 34.783 0.00 0.00 0.00 2.15
389 390 5.697473 TTTTGCCGTGAAGTCAATATGAA 57.303 34.783 0.00 0.00 0.00 2.57
390 391 5.895636 TTTGCCGTGAAGTCAATATGAAT 57.104 34.783 0.00 0.00 0.00 2.57
391 392 5.484173 TTGCCGTGAAGTCAATATGAATC 57.516 39.130 0.00 0.00 0.00 2.52
392 393 4.512484 TGCCGTGAAGTCAATATGAATCA 58.488 39.130 0.00 0.00 0.00 2.57
393 394 5.125356 TGCCGTGAAGTCAATATGAATCAT 58.875 37.500 0.00 0.00 30.53 2.45
394 395 5.589855 TGCCGTGAAGTCAATATGAATCATT 59.410 36.000 0.00 0.00 30.53 2.57
395 396 6.095300 TGCCGTGAAGTCAATATGAATCATTT 59.905 34.615 0.00 0.00 30.53 2.32
396 397 6.634436 GCCGTGAAGTCAATATGAATCATTTC 59.366 38.462 0.00 0.00 30.53 2.17
397 398 7.467811 GCCGTGAAGTCAATATGAATCATTTCT 60.468 37.037 0.00 0.00 30.53 2.52
398 399 8.400947 CCGTGAAGTCAATATGAATCATTTCTT 58.599 33.333 0.00 0.18 30.53 2.52
399 400 9.218359 CGTGAAGTCAATATGAATCATTTCTTG 57.782 33.333 0.00 4.09 30.53 3.02
402 403 9.727627 GAAGTCAATATGAATCATTTCTTGTCC 57.272 33.333 0.00 0.78 32.78 4.02
403 404 8.812513 AGTCAATATGAATCATTTCTTGTCCA 57.187 30.769 0.00 0.00 32.78 4.02
404 405 9.246670 AGTCAATATGAATCATTTCTTGTCCAA 57.753 29.630 0.00 0.00 32.78 3.53
435 436 9.908152 TTTATACGAGTACAATACCTGATCATG 57.092 33.333 0.00 0.00 0.00 3.07
436 437 5.854010 ACGAGTACAATACCTGATCATGT 57.146 39.130 8.74 8.74 0.00 3.21
437 438 6.222038 ACGAGTACAATACCTGATCATGTT 57.778 37.500 9.01 0.00 0.00 2.71
438 439 6.640518 ACGAGTACAATACCTGATCATGTTT 58.359 36.000 9.01 0.00 0.00 2.83
439 440 6.535150 ACGAGTACAATACCTGATCATGTTTG 59.465 38.462 9.01 13.93 0.00 2.93
440 441 6.756542 CGAGTACAATACCTGATCATGTTTGA 59.243 38.462 21.11 4.56 36.00 2.69
441 442 7.439356 CGAGTACAATACCTGATCATGTTTGAT 59.561 37.037 21.11 6.22 45.39 2.57
442 443 9.113838 GAGTACAATACCTGATCATGTTTGATT 57.886 33.333 21.11 10.41 42.73 2.57
443 444 9.113838 AGTACAATACCTGATCATGTTTGATTC 57.886 33.333 21.11 14.42 42.73 2.52
444 445 7.338800 ACAATACCTGATCATGTTTGATTCC 57.661 36.000 21.11 0.00 42.73 3.01
445 446 6.891361 ACAATACCTGATCATGTTTGATTCCA 59.109 34.615 21.11 2.37 42.73 3.53
446 447 7.396907 ACAATACCTGATCATGTTTGATTCCAA 59.603 33.333 21.11 1.84 42.73 3.53
447 448 7.959658 ATACCTGATCATGTTTGATTCCAAA 57.040 32.000 9.01 0.00 42.73 3.28
448 449 6.669125 ACCTGATCATGTTTGATTCCAAAA 57.331 33.333 0.00 0.00 42.73 2.44
449 450 7.065120 ACCTGATCATGTTTGATTCCAAAAA 57.935 32.000 0.00 0.00 42.73 1.94
509 510 1.504359 TTTGCGTATATAGGGTGCGC 58.496 50.000 0.00 0.00 47.00 6.09
510 511 3.763319 GCGTATATAGGGTGCGCG 58.237 61.111 0.00 0.00 38.75 6.86
511 512 1.804326 GCGTATATAGGGTGCGCGG 60.804 63.158 8.83 0.00 38.75 6.46
512 513 1.153901 CGTATATAGGGTGCGCGGG 60.154 63.158 8.83 0.00 0.00 6.13
513 514 1.870055 CGTATATAGGGTGCGCGGGT 61.870 60.000 8.83 0.00 0.00 5.28
514 515 1.176527 GTATATAGGGTGCGCGGGTA 58.823 55.000 8.83 0.00 0.00 3.69
515 516 1.135286 GTATATAGGGTGCGCGGGTAC 60.135 57.143 12.29 12.29 0.00 3.34
529 530 3.842869 GGTACCTGAGAGCACCAAG 57.157 57.895 4.06 0.00 0.00 3.61
530 531 0.977395 GGTACCTGAGAGCACCAAGT 59.023 55.000 4.06 0.00 0.00 3.16
531 532 1.348036 GGTACCTGAGAGCACCAAGTT 59.652 52.381 4.06 0.00 0.00 2.66
532 533 2.613223 GGTACCTGAGAGCACCAAGTTC 60.613 54.545 4.06 0.00 0.00 3.01
533 534 1.428869 ACCTGAGAGCACCAAGTTCT 58.571 50.000 0.00 0.00 40.86 3.01
536 537 3.896317 GAGAGCACCAAGTTCTCGT 57.104 52.632 0.00 0.00 43.31 4.18
537 538 1.704070 GAGAGCACCAAGTTCTCGTC 58.296 55.000 0.00 0.00 43.31 4.20
538 539 0.318762 AGAGCACCAAGTTCTCGTCC 59.681 55.000 0.00 0.00 31.46 4.79
539 540 1.006102 AGCACCAAGTTCTCGTCCG 60.006 57.895 0.00 0.00 0.00 4.79
540 541 2.668280 GCACCAAGTTCTCGTCCGC 61.668 63.158 0.00 0.00 0.00 5.54
541 542 2.027625 CACCAAGTTCTCGTCCGCC 61.028 63.158 0.00 0.00 0.00 6.13
542 543 2.207924 ACCAAGTTCTCGTCCGCCT 61.208 57.895 0.00 0.00 0.00 5.52
543 544 1.004918 CCAAGTTCTCGTCCGCCTT 60.005 57.895 0.00 0.00 0.00 4.35
544 545 0.245539 CCAAGTTCTCGTCCGCCTTA 59.754 55.000 0.00 0.00 0.00 2.69
545 546 1.134788 CCAAGTTCTCGTCCGCCTTAT 60.135 52.381 0.00 0.00 0.00 1.73
546 547 2.100252 CCAAGTTCTCGTCCGCCTTATA 59.900 50.000 0.00 0.00 0.00 0.98
547 548 3.114065 CAAGTTCTCGTCCGCCTTATAC 58.886 50.000 0.00 0.00 0.00 1.47
548 549 1.680207 AGTTCTCGTCCGCCTTATACC 59.320 52.381 0.00 0.00 0.00 2.73
549 550 1.035139 TTCTCGTCCGCCTTATACCC 58.965 55.000 0.00 0.00 0.00 3.69
550 551 1.168407 TCTCGTCCGCCTTATACCCG 61.168 60.000 0.00 0.00 0.00 5.28
551 552 2.355481 CGTCCGCCTTATACCCGC 60.355 66.667 0.00 0.00 0.00 6.13
552 553 2.853290 CGTCCGCCTTATACCCGCT 61.853 63.158 0.00 0.00 0.00 5.52
553 554 1.444672 GTCCGCCTTATACCCGCTT 59.555 57.895 0.00 0.00 0.00 4.68
554 555 0.878961 GTCCGCCTTATACCCGCTTG 60.879 60.000 0.00 0.00 0.00 4.01
555 556 1.145377 CCGCCTTATACCCGCTTGT 59.855 57.895 0.00 0.00 0.00 3.16
556 557 0.878961 CCGCCTTATACCCGCTTGTC 60.879 60.000 0.00 0.00 0.00 3.18
557 558 0.104304 CGCCTTATACCCGCTTGTCT 59.896 55.000 0.00 0.00 0.00 3.41
558 559 1.583054 GCCTTATACCCGCTTGTCTG 58.417 55.000 0.00 0.00 0.00 3.51
559 560 1.134491 GCCTTATACCCGCTTGTCTGT 60.134 52.381 0.00 0.00 0.00 3.41
560 561 2.550978 CCTTATACCCGCTTGTCTGTG 58.449 52.381 0.00 0.00 0.00 3.66
561 562 1.933853 CTTATACCCGCTTGTCTGTGC 59.066 52.381 0.00 0.00 0.00 4.57
562 563 0.177141 TATACCCGCTTGTCTGTGCC 59.823 55.000 0.00 0.00 0.00 5.01
563 564 1.836999 ATACCCGCTTGTCTGTGCCA 61.837 55.000 0.00 0.00 0.00 4.92
564 565 2.725203 TACCCGCTTGTCTGTGCCAC 62.725 60.000 0.00 0.00 0.00 5.01
565 566 3.357079 CCGCTTGTCTGTGCCACC 61.357 66.667 0.00 0.00 0.00 4.61
566 567 2.591429 CGCTTGTCTGTGCCACCA 60.591 61.111 0.00 0.00 0.00 4.17
567 568 2.186160 CGCTTGTCTGTGCCACCAA 61.186 57.895 0.00 0.00 0.00 3.67
568 569 1.656441 GCTTGTCTGTGCCACCAAG 59.344 57.895 7.66 7.66 37.84 3.61
569 570 1.656441 CTTGTCTGTGCCACCAAGC 59.344 57.895 0.00 0.00 0.00 4.01
570 571 0.820891 CTTGTCTGTGCCACCAAGCT 60.821 55.000 0.00 0.00 0.00 3.74
571 572 0.472044 TTGTCTGTGCCACCAAGCTA 59.528 50.000 0.00 0.00 0.00 3.32
572 573 0.035317 TGTCTGTGCCACCAAGCTAG 59.965 55.000 0.00 0.00 0.00 3.42
573 574 1.003355 TCTGTGCCACCAAGCTAGC 60.003 57.895 6.62 6.62 0.00 3.42
574 575 1.302752 CTGTGCCACCAAGCTAGCA 60.303 57.895 18.83 0.00 0.00 3.49
576 577 2.034066 TGCCACCAAGCTAGCACC 59.966 61.111 18.83 0.00 0.00 5.01
577 578 2.751837 GCCACCAAGCTAGCACCC 60.752 66.667 18.83 0.00 0.00 4.61
578 579 2.044946 CCACCAAGCTAGCACCCC 60.045 66.667 18.83 0.00 0.00 4.95
579 580 2.436646 CACCAAGCTAGCACCCCG 60.437 66.667 18.83 1.60 0.00 5.73
580 581 2.928396 ACCAAGCTAGCACCCCGT 60.928 61.111 18.83 2.27 0.00 5.28
581 582 2.125106 CCAAGCTAGCACCCCGTC 60.125 66.667 18.83 0.00 0.00 4.79
582 583 2.660064 CCAAGCTAGCACCCCGTCT 61.660 63.158 18.83 0.00 0.00 4.18
583 584 1.327690 CCAAGCTAGCACCCCGTCTA 61.328 60.000 18.83 0.00 0.00 2.59
584 585 0.179108 CAAGCTAGCACCCCGTCTAC 60.179 60.000 18.83 0.00 0.00 2.59
585 586 0.324460 AAGCTAGCACCCCGTCTACT 60.324 55.000 18.83 0.00 0.00 2.57
586 587 0.324460 AGCTAGCACCCCGTCTACTT 60.324 55.000 18.83 0.00 0.00 2.24
587 588 0.535797 GCTAGCACCCCGTCTACTTT 59.464 55.000 10.63 0.00 0.00 2.66
588 589 1.066358 GCTAGCACCCCGTCTACTTTT 60.066 52.381 10.63 0.00 0.00 2.27
589 590 2.889852 CTAGCACCCCGTCTACTTTTC 58.110 52.381 0.00 0.00 0.00 2.29
590 591 1.349067 AGCACCCCGTCTACTTTTCT 58.651 50.000 0.00 0.00 0.00 2.52
591 592 1.697982 AGCACCCCGTCTACTTTTCTT 59.302 47.619 0.00 0.00 0.00 2.52
592 593 2.901839 AGCACCCCGTCTACTTTTCTTA 59.098 45.455 0.00 0.00 0.00 2.10
593 594 3.518303 AGCACCCCGTCTACTTTTCTTAT 59.482 43.478 0.00 0.00 0.00 1.73
594 595 3.869832 GCACCCCGTCTACTTTTCTTATC 59.130 47.826 0.00 0.00 0.00 1.75
595 596 4.382793 GCACCCCGTCTACTTTTCTTATCT 60.383 45.833 0.00 0.00 0.00 1.98
596 597 5.163478 GCACCCCGTCTACTTTTCTTATCTA 60.163 44.000 0.00 0.00 0.00 1.98
597 598 6.462628 GCACCCCGTCTACTTTTCTTATCTAT 60.463 42.308 0.00 0.00 0.00 1.98
598 599 7.146648 CACCCCGTCTACTTTTCTTATCTATC 58.853 42.308 0.00 0.00 0.00 2.08
599 600 7.014422 CACCCCGTCTACTTTTCTTATCTATCT 59.986 40.741 0.00 0.00 0.00 1.98
600 601 8.223330 ACCCCGTCTACTTTTCTTATCTATCTA 58.777 37.037 0.00 0.00 0.00 1.98
601 602 9.245481 CCCCGTCTACTTTTCTTATCTATCTAT 57.755 37.037 0.00 0.00 0.00 1.98
661 662 0.610232 CCTGCCAACTTGGAGAAGGG 60.610 60.000 12.37 1.98 40.96 3.95
663 664 1.228552 GCCAACTTGGAGAAGGGCA 60.229 57.895 12.37 0.00 40.96 5.36
864 868 1.068121 CCACCTTCTTTCTCCCCTGT 58.932 55.000 0.00 0.00 0.00 4.00
871 875 3.334583 TCTTTCTCCCCTGTTTCATCG 57.665 47.619 0.00 0.00 0.00 3.84
903 907 0.387367 CTGACCTCGTCACTCCAACG 60.387 60.000 0.00 0.00 37.67 4.10
924 936 5.220381 ACGCTGCGCATATATATATGTACC 58.780 41.667 26.27 17.58 41.63 3.34
928 940 6.628919 TGCGCATATATATATGTACCGAGT 57.371 37.500 26.27 0.00 41.63 4.18
957 977 0.457443 TCGAGCGCATCTTCACTCAT 59.543 50.000 11.47 0.00 0.00 2.90
964 984 1.674962 GCATCTTCACTCATCAAGCCC 59.325 52.381 0.00 0.00 0.00 5.19
993 1013 1.274167 TGATAAAGACCAAGACCGCGT 59.726 47.619 4.92 0.00 0.00 6.01
1021 1041 1.207089 TGGTACAAGAATCCGAGCAGG 59.793 52.381 0.00 0.00 36.85 4.85
1025 1045 2.359169 AAGAATCCGAGCAGGCCGA 61.359 57.895 0.00 0.00 40.77 5.54
1146 1166 3.808618 GCATCTTTCTGGTGTTCCTGACT 60.809 47.826 0.00 0.00 40.51 3.41
1188 1214 4.476297 TCCTCCAGTACTACTTCAACACA 58.524 43.478 0.00 0.00 0.00 3.72
1632 1701 3.057547 CTCTCACGGAGGCCACTCG 62.058 68.421 5.01 8.29 44.93 4.18
1689 1758 1.541379 TCGACATTCCGGACTCAAGA 58.459 50.000 1.83 0.00 0.00 3.02
1940 2258 2.124996 CCTCCCTCCCAGTCCCAA 59.875 66.667 0.00 0.00 0.00 4.12
1965 2283 0.394565 AACTCCGATGCCTATGCTCC 59.605 55.000 0.00 0.00 38.71 4.70
1988 2315 3.165087 ACATATAATGCAGCTGCCCAT 57.835 42.857 34.64 24.88 41.18 4.00
1991 2318 4.643334 ACATATAATGCAGCTGCCCATATG 59.357 41.667 34.61 34.61 39.14 1.78
2080 2416 7.329962 GTGAATTTTGCATCATCTCAAACATCA 59.670 33.333 0.00 0.00 32.58 3.07
2103 2447 6.605849 CATCAGATGATGTAAAAATAGGGCG 58.394 40.000 13.55 0.00 45.10 6.13
2127 2471 2.728690 TTTGCTCCAACATGTGATGC 57.271 45.000 0.00 2.72 0.00 3.91
2164 2508 9.880064 TGAAAACATCAATACATTGCAAATTTG 57.120 25.926 14.03 14.03 37.68 2.32
2196 2540 6.721208 ACATGACAATTTCAAACATACTCCCT 59.279 34.615 0.00 0.00 37.92 4.20
2197 2541 6.817765 TGACAATTTCAAACATACTCCCTC 57.182 37.500 0.00 0.00 0.00 4.30
2198 2542 5.710099 TGACAATTTCAAACATACTCCCTCC 59.290 40.000 0.00 0.00 0.00 4.30
2199 2543 4.700213 ACAATTTCAAACATACTCCCTCCG 59.300 41.667 0.00 0.00 0.00 4.63
2200 2544 4.569719 ATTTCAAACATACTCCCTCCGT 57.430 40.909 0.00 0.00 0.00 4.69
2201 2545 3.604875 TTCAAACATACTCCCTCCGTC 57.395 47.619 0.00 0.00 0.00 4.79
2202 2546 1.829222 TCAAACATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
2203 2547 1.134491 CAAACATACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
2204 2548 0.042131 AACATACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2205 2549 0.264955 ACATACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
2206 2550 1.502039 ACATACTCCCTCCGTCCCATA 59.498 52.381 0.00 0.00 0.00 2.74
2207 2551 2.090943 ACATACTCCCTCCGTCCCATAA 60.091 50.000 0.00 0.00 0.00 1.90
2208 2552 3.173965 CATACTCCCTCCGTCCCATAAT 58.826 50.000 0.00 0.00 0.00 1.28
2209 2553 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2210 2554 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2211 2555 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2212 2556 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2213 2557 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2214 2558 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2215 2559 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
2216 2560 4.775780 CCCTCCGTCCCATAATGTAAGATA 59.224 45.833 0.00 0.00 0.00 1.98
2217 2561 5.425539 CCCTCCGTCCCATAATGTAAGATAT 59.574 44.000 0.00 0.00 0.00 1.63
2218 2562 6.070194 CCCTCCGTCCCATAATGTAAGATATT 60.070 42.308 0.00 0.00 0.00 1.28
2219 2563 7.394816 CCTCCGTCCCATAATGTAAGATATTT 58.605 38.462 0.00 0.00 0.00 1.40
2220 2564 7.883311 CCTCCGTCCCATAATGTAAGATATTTT 59.117 37.037 0.00 0.00 0.00 1.82
2221 2565 9.284968 CTCCGTCCCATAATGTAAGATATTTTT 57.715 33.333 0.00 0.00 0.00 1.94
2253 2597 9.716507 CTAAAAACATCTTACATTATGGAACGG 57.283 33.333 0.00 0.00 0.00 4.44
2254 2598 7.931578 AAAACATCTTACATTATGGAACGGA 57.068 32.000 0.00 0.00 0.00 4.69
2255 2599 7.553881 AAACATCTTACATTATGGAACGGAG 57.446 36.000 0.00 0.00 0.00 4.63
2256 2600 5.611374 ACATCTTACATTATGGAACGGAGG 58.389 41.667 0.00 0.00 0.00 4.30
2257 2601 4.682778 TCTTACATTATGGAACGGAGGG 57.317 45.455 0.00 0.00 0.00 4.30
2258 2602 4.291792 TCTTACATTATGGAACGGAGGGA 58.708 43.478 0.00 0.00 0.00 4.20
2259 2603 4.344102 TCTTACATTATGGAACGGAGGGAG 59.656 45.833 0.00 0.00 0.00 4.30
2260 2604 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
2261 2605 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
2262 2606 3.641906 ACATTATGGAACGGAGGGAGTAG 59.358 47.826 0.00 0.00 0.00 2.57
2263 2607 3.393426 TTATGGAACGGAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
2264 2608 2.249309 ATGGAACGGAGGGAGTAGTT 57.751 50.000 0.00 0.00 0.00 2.24
2265 2609 1.553706 TGGAACGGAGGGAGTAGTTC 58.446 55.000 0.00 0.00 41.40 3.01
2266 2610 1.076677 TGGAACGGAGGGAGTAGTTCT 59.923 52.381 7.05 0.00 41.72 3.01
2267 2611 1.477295 GGAACGGAGGGAGTAGTTCTG 59.523 57.143 7.05 0.00 41.72 3.02
2281 2625 9.152595 GGGAGTAGTTCTGATACAAACTAAAAG 57.847 37.037 0.00 0.00 39.11 2.27
2334 2678 8.381387 GTTCCGATACAAAGATTCTTTGACTAC 58.619 37.037 34.60 22.90 33.83 2.73
2339 2683 9.141400 GATACAAAGATTCTTTGACTACGAACT 57.859 33.333 34.60 17.71 33.83 3.01
2343 2687 9.622004 CAAAGATTCTTTGACTACGAACTACTA 57.378 33.333 27.67 0.00 0.00 1.82
2358 2705 6.035866 ACGAACTACTACGAACTACTCATCAG 59.964 42.308 0.00 0.00 0.00 2.90
2365 2712 3.942748 ACGAACTACTCATCAGAGAGGTC 59.057 47.826 0.00 0.82 44.98 3.85
2378 2725 0.545171 AGAGGTCGTCCCAGTCGATA 59.455 55.000 0.00 0.00 39.45 2.92
2425 2772 4.345859 TGTTCACCAAGTCCGAACTATT 57.654 40.909 0.00 0.00 39.77 1.73
2437 2784 3.009723 CCGAACTATTGAGCACAACCAT 58.990 45.455 0.00 0.00 38.90 3.55
2442 2789 2.479566 ATTGAGCACAACCATCGTCT 57.520 45.000 0.00 0.00 38.90 4.18
2469 2816 2.810767 GCCAACTTCGTCCTCCTTCTTT 60.811 50.000 0.00 0.00 0.00 2.52
2472 2819 3.840124 ACTTCGTCCTCCTTCTTTGTT 57.160 42.857 0.00 0.00 0.00 2.83
2476 2823 3.128349 TCGTCCTCCTTCTTTGTTTTCG 58.872 45.455 0.00 0.00 0.00 3.46
2477 2824 2.870411 CGTCCTCCTTCTTTGTTTTCGT 59.130 45.455 0.00 0.00 0.00 3.85
2482 2838 4.816925 CCTCCTTCTTTGTTTTCGTCTTCT 59.183 41.667 0.00 0.00 0.00 2.85
2503 2860 3.728845 TCCTCCTTCTTTGTCTTGTTCG 58.271 45.455 0.00 0.00 0.00 3.95
2526 2883 2.284684 CGACGCATAGAACTCGTACTCT 59.715 50.000 0.00 0.00 36.50 3.24
2540 2897 1.315981 TACTCTGCCTGCTCGAGGTG 61.316 60.000 15.58 0.00 44.97 4.00
2541 2898 2.601666 TCTGCCTGCTCGAGGTGT 60.602 61.111 15.58 0.00 44.97 4.16
2542 2899 2.164865 CTCTGCCTGCTCGAGGTGTT 62.165 60.000 15.58 0.00 44.97 3.32
2569 2926 3.864686 CCGCAAACCTCGCCATCG 61.865 66.667 0.00 0.00 0.00 3.84
2570 2927 3.864686 CGCAAACCTCGCCATCGG 61.865 66.667 0.00 0.00 36.13 4.18
2595 2952 0.388520 CATCCTGTCGACAAGCGTCA 60.389 55.000 20.49 0.00 42.74 4.35
2614 2971 4.489810 GTCACACTGATCAAGAACGATCT 58.510 43.478 0.00 0.00 42.01 2.75
2670 3027 2.033141 TCGGGACCGACGAACTCT 59.967 61.111 9.76 0.00 44.01 3.24
2676 3033 1.261089 GGACCGACGAACTCTAGATCG 59.739 57.143 12.99 12.99 44.34 3.69
2695 3052 1.682344 GCCTGGTTGTCAATCCCCC 60.682 63.158 0.00 0.00 0.00 5.40
2697 3054 1.378514 CTGGTTGTCAATCCCCCGG 60.379 63.158 0.00 0.00 0.00 5.73
2758 4683 1.444119 TTGTCAAAGGTGAGTGCGGC 61.444 55.000 0.00 0.00 33.27 6.53
2784 4709 0.896019 AGACTCCTCCCACGTGTCAG 60.896 60.000 15.65 9.32 0.00 3.51
2787 4712 3.625897 CCTCCCACGTGTCAGGCA 61.626 66.667 15.65 0.00 0.00 4.75
2788 4713 2.425592 CTCCCACGTGTCAGGCAA 59.574 61.111 15.65 0.00 0.00 4.52
2816 4741 5.043903 CACACTTGGTCCTATGTTATCTCG 58.956 45.833 0.00 0.00 0.00 4.04
2857 5738 2.279851 CCGACGCACACTGTGGAA 60.280 61.111 13.09 0.00 33.64 3.53
2860 5741 2.591715 ACGCACACTGTGGAAGCC 60.592 61.111 13.09 0.00 33.64 4.35
2862 5743 3.357079 GCACACTGTGGAAGCCGG 61.357 66.667 13.09 0.00 33.64 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 9.781633 CGTCTCTATACTACTATAGCCCATTAT 57.218 37.037 0.00 0.00 34.15 1.28
24 25 7.714377 GCGTCTCTATACTACTATAGCCCATTA 59.286 40.741 0.00 0.00 34.15 1.90
25 26 6.543100 GCGTCTCTATACTACTATAGCCCATT 59.457 42.308 0.00 0.00 34.15 3.16
26 27 6.056884 GCGTCTCTATACTACTATAGCCCAT 58.943 44.000 0.00 0.00 34.15 4.00
27 28 5.426504 GCGTCTCTATACTACTATAGCCCA 58.573 45.833 0.00 0.00 34.15 5.36
28 29 4.815846 GGCGTCTCTATACTACTATAGCCC 59.184 50.000 0.00 0.00 34.15 5.19
29 30 5.673514 AGGCGTCTCTATACTACTATAGCC 58.326 45.833 0.00 0.00 34.15 3.93
30 31 7.043565 AGAAGGCGTCTCTATACTACTATAGC 58.956 42.308 0.00 0.00 34.15 2.97
45 46 3.181461 CCAATAATGAGGAGAAGGCGTCT 60.181 47.826 1.56 1.56 40.25 4.18
46 47 3.134458 CCAATAATGAGGAGAAGGCGTC 58.866 50.000 0.00 0.00 0.00 5.19
47 48 2.771943 TCCAATAATGAGGAGAAGGCGT 59.228 45.455 0.00 0.00 0.00 5.68
48 49 3.475566 TCCAATAATGAGGAGAAGGCG 57.524 47.619 0.00 0.00 0.00 5.52
49 50 4.723309 ACATCCAATAATGAGGAGAAGGC 58.277 43.478 0.00 0.00 37.34 4.35
50 51 7.651027 AAAACATCCAATAATGAGGAGAAGG 57.349 36.000 0.00 0.00 37.34 3.46
98 99 9.320352 GCCTAATTTGAAGGTGTTTAAAAGAAA 57.680 29.630 0.00 0.00 36.43 2.52
99 100 7.929245 GGCCTAATTTGAAGGTGTTTAAAAGAA 59.071 33.333 0.00 0.00 36.43 2.52
100 101 7.438564 GGCCTAATTTGAAGGTGTTTAAAAGA 58.561 34.615 0.00 0.00 36.43 2.52
101 102 6.364976 CGGCCTAATTTGAAGGTGTTTAAAAG 59.635 38.462 0.00 0.00 36.43 2.27
102 103 6.040616 TCGGCCTAATTTGAAGGTGTTTAAAA 59.959 34.615 0.00 0.00 36.43 1.52
103 104 5.535406 TCGGCCTAATTTGAAGGTGTTTAAA 59.465 36.000 0.00 0.00 36.43 1.52
104 105 5.071370 TCGGCCTAATTTGAAGGTGTTTAA 58.929 37.500 0.00 0.00 36.43 1.52
105 106 4.653868 TCGGCCTAATTTGAAGGTGTTTA 58.346 39.130 0.00 0.00 36.43 2.01
106 107 3.492337 TCGGCCTAATTTGAAGGTGTTT 58.508 40.909 0.00 0.00 36.43 2.83
107 108 3.149005 TCGGCCTAATTTGAAGGTGTT 57.851 42.857 0.00 0.00 36.43 3.32
108 109 2.871096 TCGGCCTAATTTGAAGGTGT 57.129 45.000 0.00 0.00 36.43 4.16
109 110 5.120208 CGTATATCGGCCTAATTTGAAGGTG 59.880 44.000 0.00 0.00 36.43 4.00
110 111 5.235516 CGTATATCGGCCTAATTTGAAGGT 58.764 41.667 0.00 0.00 36.43 3.50
111 112 5.779806 CGTATATCGGCCTAATTTGAAGG 57.220 43.478 0.00 0.00 37.17 3.46
125 126 6.605849 TCTCCTTCGTATTTTCCGTATATCG 58.394 40.000 0.00 0.00 39.52 2.92
126 127 7.328005 GGTTCTCCTTCGTATTTTCCGTATATC 59.672 40.741 0.00 0.00 0.00 1.63
127 128 7.015001 AGGTTCTCCTTCGTATTTTCCGTATAT 59.985 37.037 0.00 0.00 42.12 0.86
128 129 6.322201 AGGTTCTCCTTCGTATTTTCCGTATA 59.678 38.462 0.00 0.00 42.12 1.47
129 130 5.128335 AGGTTCTCCTTCGTATTTTCCGTAT 59.872 40.000 0.00 0.00 42.12 3.06
130 131 4.463891 AGGTTCTCCTTCGTATTTTCCGTA 59.536 41.667 0.00 0.00 42.12 4.02
131 132 3.260128 AGGTTCTCCTTCGTATTTTCCGT 59.740 43.478 0.00 0.00 42.12 4.69
132 133 3.617263 CAGGTTCTCCTTCGTATTTTCCG 59.383 47.826 0.00 0.00 43.07 4.30
133 134 3.939592 CCAGGTTCTCCTTCGTATTTTCC 59.060 47.826 0.00 0.00 43.07 3.13
134 135 4.828829 TCCAGGTTCTCCTTCGTATTTTC 58.171 43.478 0.00 0.00 43.07 2.29
135 136 4.903045 TCCAGGTTCTCCTTCGTATTTT 57.097 40.909 0.00 0.00 43.07 1.82
136 137 6.749036 ATATCCAGGTTCTCCTTCGTATTT 57.251 37.500 0.00 0.00 43.07 1.40
137 138 6.464465 CCAATATCCAGGTTCTCCTTCGTATT 60.464 42.308 0.00 0.00 43.07 1.89
138 139 5.012148 CCAATATCCAGGTTCTCCTTCGTAT 59.988 44.000 0.00 0.00 43.07 3.06
139 140 4.344102 CCAATATCCAGGTTCTCCTTCGTA 59.656 45.833 0.00 0.00 43.07 3.43
140 141 3.134804 CCAATATCCAGGTTCTCCTTCGT 59.865 47.826 0.00 0.00 43.07 3.85
141 142 3.134804 ACCAATATCCAGGTTCTCCTTCG 59.865 47.826 0.00 0.00 43.07 3.79
142 143 4.455606 CACCAATATCCAGGTTCTCCTTC 58.544 47.826 0.00 0.00 43.07 3.46
143 144 3.372025 GCACCAATATCCAGGTTCTCCTT 60.372 47.826 0.00 0.00 43.07 3.36
144 145 2.173569 GCACCAATATCCAGGTTCTCCT 59.826 50.000 0.00 0.00 46.37 3.69
145 146 2.092429 TGCACCAATATCCAGGTTCTCC 60.092 50.000 0.00 0.00 35.52 3.71
146 147 2.945668 GTGCACCAATATCCAGGTTCTC 59.054 50.000 5.22 0.00 35.52 2.87
147 148 2.357154 GGTGCACCAATATCCAGGTTCT 60.357 50.000 31.23 0.00 35.52 3.01
148 149 2.024414 GGTGCACCAATATCCAGGTTC 58.976 52.381 31.23 0.00 35.52 3.62
149 150 1.341976 GGGTGCACCAATATCCAGGTT 60.342 52.381 35.78 0.00 39.85 3.50
150 151 0.258774 GGGTGCACCAATATCCAGGT 59.741 55.000 35.78 0.00 39.85 4.00
151 152 0.552848 AGGGTGCACCAATATCCAGG 59.447 55.000 35.78 0.00 43.89 4.45
152 153 3.795688 ATAGGGTGCACCAATATCCAG 57.204 47.619 35.78 0.00 43.89 3.86
153 154 4.567537 GCATATAGGGTGCACCAATATCCA 60.568 45.833 35.78 18.69 43.89 3.41
154 155 3.947834 GCATATAGGGTGCACCAATATCC 59.052 47.826 35.78 22.83 43.89 2.59
155 156 4.588899 TGCATATAGGGTGCACCAATATC 58.411 43.478 35.78 25.11 46.76 1.63
156 157 4.656100 TGCATATAGGGTGCACCAATAT 57.344 40.909 35.78 30.01 46.76 1.28
269 270 5.356190 GGATGCAATGAAAGTCATTCTCTGA 59.644 40.000 0.47 0.00 43.03 3.27
270 271 5.357314 AGGATGCAATGAAAGTCATTCTCTG 59.643 40.000 0.47 0.00 43.03 3.35
271 272 5.357314 CAGGATGCAATGAAAGTCATTCTCT 59.643 40.000 0.47 0.00 43.03 3.10
272 273 5.450137 CCAGGATGCAATGAAAGTCATTCTC 60.450 44.000 0.47 0.01 44.60 2.87
273 274 4.401519 CCAGGATGCAATGAAAGTCATTCT 59.598 41.667 0.47 0.00 44.60 2.40
274 275 4.441079 CCCAGGATGCAATGAAAGTCATTC 60.441 45.833 0.47 0.00 44.60 2.67
276 277 3.028850 CCCAGGATGCAATGAAAGTCAT 58.971 45.455 0.00 0.00 34.32 3.06
277 278 2.225091 ACCCAGGATGCAATGAAAGTCA 60.225 45.455 0.00 0.00 31.97 3.41
278 279 2.424956 GACCCAGGATGCAATGAAAGTC 59.575 50.000 0.00 0.00 31.97 3.01
279 280 2.225091 TGACCCAGGATGCAATGAAAGT 60.225 45.455 0.00 0.00 31.97 2.66
280 281 2.449464 TGACCCAGGATGCAATGAAAG 58.551 47.619 0.00 0.00 31.97 2.62
281 282 2.601240 TGACCCAGGATGCAATGAAA 57.399 45.000 0.00 0.00 31.97 2.69
282 283 2.601240 TTGACCCAGGATGCAATGAA 57.399 45.000 0.00 0.00 31.97 2.57
283 284 2.041485 TCTTTGACCCAGGATGCAATGA 59.959 45.455 0.00 0.00 31.97 2.57
284 285 2.449464 TCTTTGACCCAGGATGCAATG 58.551 47.619 0.00 0.00 31.97 2.82
285 286 2.905415 TCTTTGACCCAGGATGCAAT 57.095 45.000 0.00 0.00 31.97 3.56
286 287 2.905415 ATCTTTGACCCAGGATGCAA 57.095 45.000 0.00 0.00 31.97 4.08
287 288 2.827322 CAAATCTTTGACCCAGGATGCA 59.173 45.455 0.00 0.00 40.55 3.96
288 289 2.167075 CCAAATCTTTGACCCAGGATGC 59.833 50.000 4.25 0.00 40.55 3.91
289 290 2.167075 GCCAAATCTTTGACCCAGGATG 59.833 50.000 4.25 0.00 40.55 3.51
290 291 2.225343 TGCCAAATCTTTGACCCAGGAT 60.225 45.455 4.25 0.00 40.55 3.24
291 292 1.146774 TGCCAAATCTTTGACCCAGGA 59.853 47.619 4.25 0.00 40.55 3.86
292 293 1.631405 TGCCAAATCTTTGACCCAGG 58.369 50.000 4.25 0.00 40.55 4.45
293 294 3.749665 TTTGCCAAATCTTTGACCCAG 57.250 42.857 4.25 0.00 40.55 4.45
294 295 4.494091 TTTTTGCCAAATCTTTGACCCA 57.506 36.364 4.25 0.00 40.55 4.51
315 316 9.622004 GCGTGTATAGTACTTGTACATATCATT 57.378 33.333 18.21 0.00 31.71 2.57
316 317 9.011095 AGCGTGTATAGTACTTGTACATATCAT 57.989 33.333 18.21 0.00 31.71 2.45
317 318 8.387190 AGCGTGTATAGTACTTGTACATATCA 57.613 34.615 18.21 4.84 31.71 2.15
325 326 8.013947 CGACAATATAGCGTGTATAGTACTTGT 58.986 37.037 0.00 0.00 0.00 3.16
326 327 8.013947 ACGACAATATAGCGTGTATAGTACTTG 58.986 37.037 0.00 0.00 36.83 3.16
327 328 8.092521 ACGACAATATAGCGTGTATAGTACTT 57.907 34.615 0.00 0.00 36.83 2.24
328 329 7.386025 TGACGACAATATAGCGTGTATAGTACT 59.614 37.037 0.00 0.00 38.51 2.73
329 330 7.513132 TGACGACAATATAGCGTGTATAGTAC 58.487 38.462 0.00 0.00 38.51 2.73
330 331 7.656707 TGACGACAATATAGCGTGTATAGTA 57.343 36.000 0.00 0.00 38.51 1.82
331 332 6.549912 TGACGACAATATAGCGTGTATAGT 57.450 37.500 0.00 0.00 38.51 2.12
332 333 9.550811 TTTATGACGACAATATAGCGTGTATAG 57.449 33.333 0.00 0.00 38.51 1.31
333 334 9.333497 GTTTATGACGACAATATAGCGTGTATA 57.667 33.333 0.00 0.00 38.51 1.47
334 335 8.080417 AGTTTATGACGACAATATAGCGTGTAT 58.920 33.333 0.00 0.00 38.51 2.29
335 336 7.420002 AGTTTATGACGACAATATAGCGTGTA 58.580 34.615 0.00 0.00 38.51 2.90
336 337 6.270815 AGTTTATGACGACAATATAGCGTGT 58.729 36.000 0.00 0.00 38.51 4.49
337 338 6.749216 AGTTTATGACGACAATATAGCGTG 57.251 37.500 0.00 0.00 38.51 5.34
338 339 6.755141 ACAAGTTTATGACGACAATATAGCGT 59.245 34.615 0.00 0.00 41.45 5.07
339 340 7.161829 ACAAGTTTATGACGACAATATAGCG 57.838 36.000 0.00 0.00 0.00 4.26
340 341 8.354011 AGACAAGTTTATGACGACAATATAGC 57.646 34.615 0.00 0.00 0.00 2.97
366 367 5.697473 TCATATTGACTTCACGGCAAAAA 57.303 34.783 0.00 0.00 0.00 1.94
367 368 5.697473 TTCATATTGACTTCACGGCAAAA 57.303 34.783 0.00 0.00 0.00 2.44
368 369 5.414144 TGATTCATATTGACTTCACGGCAAA 59.586 36.000 0.00 0.00 0.00 3.68
369 370 4.940654 TGATTCATATTGACTTCACGGCAA 59.059 37.500 0.00 0.00 0.00 4.52
370 371 4.512484 TGATTCATATTGACTTCACGGCA 58.488 39.130 0.00 0.00 0.00 5.69
371 372 5.679734 ATGATTCATATTGACTTCACGGC 57.320 39.130 0.00 0.00 0.00 5.68
372 373 7.923888 AGAAATGATTCATATTGACTTCACGG 58.076 34.615 0.00 0.00 38.06 4.94
373 374 9.218359 CAAGAAATGATTCATATTGACTTCACG 57.782 33.333 0.00 0.00 38.06 4.35
376 377 9.727627 GGACAAGAAATGATTCATATTGACTTC 57.272 33.333 18.57 10.48 38.06 3.01
377 378 9.246670 TGGACAAGAAATGATTCATATTGACTT 57.753 29.630 18.57 10.00 38.06 3.01
378 379 8.812513 TGGACAAGAAATGATTCATATTGACT 57.187 30.769 18.57 5.98 38.06 3.41
409 410 9.908152 CATGATCAGGTATTGTACTCGTATAAA 57.092 33.333 0.09 0.00 0.00 1.40
410 411 9.074576 ACATGATCAGGTATTGTACTCGTATAA 57.925 33.333 12.06 0.00 0.00 0.98
411 412 8.631480 ACATGATCAGGTATTGTACTCGTATA 57.369 34.615 12.06 0.00 0.00 1.47
412 413 7.526142 ACATGATCAGGTATTGTACTCGTAT 57.474 36.000 12.06 0.00 0.00 3.06
413 414 6.954487 ACATGATCAGGTATTGTACTCGTA 57.046 37.500 12.06 0.00 0.00 3.43
414 415 5.854010 ACATGATCAGGTATTGTACTCGT 57.146 39.130 12.06 0.00 0.00 4.18
415 416 6.756542 TCAAACATGATCAGGTATTGTACTCG 59.243 38.462 14.25 0.00 0.00 4.18
416 417 8.668510 ATCAAACATGATCAGGTATTGTACTC 57.331 34.615 14.25 0.00 0.00 2.59
417 418 9.113838 GAATCAAACATGATCAGGTATTGTACT 57.886 33.333 14.25 8.98 0.00 2.73
418 419 8.345565 GGAATCAAACATGATCAGGTATTGTAC 58.654 37.037 14.25 13.42 0.00 2.90
419 420 8.052141 TGGAATCAAACATGATCAGGTATTGTA 58.948 33.333 14.25 10.27 0.00 2.41
420 421 6.891361 TGGAATCAAACATGATCAGGTATTGT 59.109 34.615 14.25 3.01 0.00 2.71
421 422 7.337480 TGGAATCAAACATGATCAGGTATTG 57.663 36.000 14.25 17.97 0.00 1.90
422 423 7.959658 TTGGAATCAAACATGATCAGGTATT 57.040 32.000 14.25 9.91 0.00 1.89
423 424 7.959658 TTTGGAATCAAACATGATCAGGTAT 57.040 32.000 14.25 0.59 37.89 2.73
424 425 7.773489 TTTTGGAATCAAACATGATCAGGTA 57.227 32.000 14.25 0.00 41.97 3.08
425 426 6.669125 TTTTGGAATCAAACATGATCAGGT 57.331 33.333 7.30 7.30 41.97 4.00
493 494 1.804326 CCGCGCACCCTATATACGC 60.804 63.158 8.75 4.97 45.72 4.42
494 495 1.153901 CCCGCGCACCCTATATACG 60.154 63.158 8.75 0.00 0.00 3.06
495 496 1.135286 GTACCCGCGCACCCTATATAC 60.135 57.143 8.75 0.00 0.00 1.47
496 497 1.176527 GTACCCGCGCACCCTATATA 58.823 55.000 8.75 0.00 0.00 0.86
497 498 1.538687 GGTACCCGCGCACCCTATAT 61.539 60.000 8.75 0.00 0.00 0.86
498 499 2.202395 GGTACCCGCGCACCCTATA 61.202 63.158 8.75 0.00 0.00 1.31
499 500 3.543641 GGTACCCGCGCACCCTAT 61.544 66.667 8.75 0.00 0.00 2.57
500 501 4.764771 AGGTACCCGCGCACCCTA 62.765 66.667 8.74 0.00 35.25 3.53
503 504 4.814294 CTCAGGTACCCGCGCACC 62.814 72.222 8.74 7.48 34.86 5.01
504 505 3.701604 CTCTCAGGTACCCGCGCAC 62.702 68.421 8.74 0.00 0.00 5.34
505 506 3.449227 CTCTCAGGTACCCGCGCA 61.449 66.667 8.74 0.00 0.00 6.09
506 507 4.874977 GCTCTCAGGTACCCGCGC 62.875 72.222 8.74 0.00 0.00 6.86
507 508 3.449227 TGCTCTCAGGTACCCGCG 61.449 66.667 8.74 0.00 0.00 6.46
508 509 2.184579 GTGCTCTCAGGTACCCGC 59.815 66.667 8.74 4.59 0.00 6.13
509 510 1.541310 TTGGTGCTCTCAGGTACCCG 61.541 60.000 8.74 0.00 40.48 5.28
510 511 0.250513 CTTGGTGCTCTCAGGTACCC 59.749 60.000 8.74 0.00 40.48 3.69
511 512 0.977395 ACTTGGTGCTCTCAGGTACC 59.023 55.000 2.73 2.73 41.35 3.34
512 513 2.300437 AGAACTTGGTGCTCTCAGGTAC 59.700 50.000 0.00 0.00 0.00 3.34
513 514 2.563179 GAGAACTTGGTGCTCTCAGGTA 59.437 50.000 0.00 0.00 37.71 3.08
514 515 1.346068 GAGAACTTGGTGCTCTCAGGT 59.654 52.381 0.00 0.00 37.71 4.00
515 516 1.671261 CGAGAACTTGGTGCTCTCAGG 60.671 57.143 4.43 0.00 36.13 3.86
516 517 1.000283 ACGAGAACTTGGTGCTCTCAG 60.000 52.381 4.43 0.00 36.13 3.35
517 518 1.000163 GACGAGAACTTGGTGCTCTCA 60.000 52.381 4.43 0.00 36.13 3.27
518 519 1.670380 GGACGAGAACTTGGTGCTCTC 60.670 57.143 4.43 1.88 36.13 3.20
519 520 0.318762 GGACGAGAACTTGGTGCTCT 59.681 55.000 4.43 0.00 36.13 4.09
520 521 1.009389 CGGACGAGAACTTGGTGCTC 61.009 60.000 0.00 0.00 34.99 4.26
521 522 1.006102 CGGACGAGAACTTGGTGCT 60.006 57.895 0.00 0.00 0.00 4.40
522 523 2.668280 GCGGACGAGAACTTGGTGC 61.668 63.158 0.00 0.00 0.00 5.01
523 524 2.027625 GGCGGACGAGAACTTGGTG 61.028 63.158 0.00 0.00 0.00 4.17
524 525 1.755393 AAGGCGGACGAGAACTTGGT 61.755 55.000 0.00 0.00 0.00 3.67
525 526 0.245539 TAAGGCGGACGAGAACTTGG 59.754 55.000 0.00 0.00 0.00 3.61
526 527 2.295253 ATAAGGCGGACGAGAACTTG 57.705 50.000 0.00 0.00 0.00 3.16
527 528 2.100418 GGTATAAGGCGGACGAGAACTT 59.900 50.000 0.00 0.00 0.00 2.66
528 529 1.680207 GGTATAAGGCGGACGAGAACT 59.320 52.381 0.00 0.00 0.00 3.01
529 530 1.269465 GGGTATAAGGCGGACGAGAAC 60.269 57.143 0.00 0.00 0.00 3.01
530 531 1.035139 GGGTATAAGGCGGACGAGAA 58.965 55.000 0.00 0.00 0.00 2.87
531 532 1.168407 CGGGTATAAGGCGGACGAGA 61.168 60.000 0.00 0.00 0.00 4.04
532 533 1.285023 CGGGTATAAGGCGGACGAG 59.715 63.158 0.00 0.00 0.00 4.18
533 534 2.848858 GCGGGTATAAGGCGGACGA 61.849 63.158 0.00 0.00 0.00 4.20
534 535 2.355481 GCGGGTATAAGGCGGACG 60.355 66.667 0.00 0.00 0.00 4.79
535 536 0.878961 CAAGCGGGTATAAGGCGGAC 60.879 60.000 0.00 0.00 0.00 4.79
536 537 1.332144 ACAAGCGGGTATAAGGCGGA 61.332 55.000 0.00 0.00 0.00 5.54
537 538 0.878961 GACAAGCGGGTATAAGGCGG 60.879 60.000 0.00 0.00 0.00 6.13
538 539 0.104304 AGACAAGCGGGTATAAGGCG 59.896 55.000 0.00 0.00 0.00 5.52
539 540 1.134491 ACAGACAAGCGGGTATAAGGC 60.134 52.381 0.00 0.00 0.00 4.35
540 541 2.550978 CACAGACAAGCGGGTATAAGG 58.449 52.381 0.00 0.00 0.00 2.69
541 542 1.933853 GCACAGACAAGCGGGTATAAG 59.066 52.381 0.00 0.00 0.00 1.73
542 543 1.406341 GGCACAGACAAGCGGGTATAA 60.406 52.381 0.00 0.00 0.00 0.98
543 544 0.177141 GGCACAGACAAGCGGGTATA 59.823 55.000 0.00 0.00 0.00 1.47
544 545 1.078426 GGCACAGACAAGCGGGTAT 60.078 57.895 0.00 0.00 0.00 2.73
545 546 2.345991 GGCACAGACAAGCGGGTA 59.654 61.111 0.00 0.00 0.00 3.69
546 547 3.872603 TGGCACAGACAAGCGGGT 61.873 61.111 0.00 0.00 0.00 5.28
547 548 3.357079 GTGGCACAGACAAGCGGG 61.357 66.667 13.86 0.00 41.80 6.13
548 549 3.357079 GGTGGCACAGACAAGCGG 61.357 66.667 20.82 0.00 41.80 5.52
549 550 2.121564 CTTGGTGGCACAGACAAGCG 62.122 60.000 20.82 0.44 43.83 4.68
550 551 1.656441 CTTGGTGGCACAGACAAGC 59.344 57.895 20.82 0.00 43.83 4.01
552 553 0.472044 TAGCTTGGTGGCACAGACAA 59.528 50.000 20.82 13.20 41.80 3.18
553 554 0.035317 CTAGCTTGGTGGCACAGACA 59.965 55.000 20.82 5.39 41.80 3.41
554 555 1.301677 GCTAGCTTGGTGGCACAGAC 61.302 60.000 20.82 5.52 41.80 3.51
555 556 1.003355 GCTAGCTTGGTGGCACAGA 60.003 57.895 20.82 5.97 41.80 3.41
556 557 1.302752 TGCTAGCTTGGTGGCACAG 60.303 57.895 20.82 10.33 41.80 3.66
557 558 2.835420 TGCTAGCTTGGTGGCACA 59.165 55.556 20.82 2.61 34.17 4.57
558 559 3.267974 GTGCTAGCTTGGTGGCAC 58.732 61.111 21.33 21.33 45.93 5.01
559 560 2.034066 GGTGCTAGCTTGGTGGCA 59.966 61.111 17.23 6.76 34.17 4.92
560 561 2.751837 GGGTGCTAGCTTGGTGGC 60.752 66.667 17.23 1.27 0.00 5.01
561 562 2.044946 GGGGTGCTAGCTTGGTGG 60.045 66.667 17.23 0.00 0.00 4.61
562 563 2.436646 CGGGGTGCTAGCTTGGTG 60.437 66.667 17.23 0.00 0.00 4.17
563 564 2.928396 ACGGGGTGCTAGCTTGGT 60.928 61.111 17.23 4.08 0.00 3.67
564 565 1.327690 TAGACGGGGTGCTAGCTTGG 61.328 60.000 17.23 3.44 0.00 3.61
565 566 0.179108 GTAGACGGGGTGCTAGCTTG 60.179 60.000 17.23 3.63 0.00 4.01
566 567 0.324460 AGTAGACGGGGTGCTAGCTT 60.324 55.000 17.23 0.00 0.00 3.74
567 568 0.324460 AAGTAGACGGGGTGCTAGCT 60.324 55.000 17.23 0.00 0.00 3.32
568 569 0.535797 AAAGTAGACGGGGTGCTAGC 59.464 55.000 8.10 8.10 0.00 3.42
569 570 2.496470 AGAAAAGTAGACGGGGTGCTAG 59.504 50.000 0.00 0.00 0.00 3.42
570 571 2.532843 AGAAAAGTAGACGGGGTGCTA 58.467 47.619 0.00 0.00 0.00 3.49
571 572 1.349067 AGAAAAGTAGACGGGGTGCT 58.651 50.000 0.00 0.00 0.00 4.40
572 573 2.180432 AAGAAAAGTAGACGGGGTGC 57.820 50.000 0.00 0.00 0.00 5.01
573 574 5.340439 AGATAAGAAAAGTAGACGGGGTG 57.660 43.478 0.00 0.00 0.00 4.61
574 575 7.068061 AGATAGATAAGAAAAGTAGACGGGGT 58.932 38.462 0.00 0.00 0.00 4.95
575 576 7.527568 AGATAGATAAGAAAAGTAGACGGGG 57.472 40.000 0.00 0.00 0.00 5.73
633 634 1.103398 AAGTTGGCAGGCATATCGGC 61.103 55.000 0.00 0.00 41.61 5.54
634 635 0.664761 CAAGTTGGCAGGCATATCGG 59.335 55.000 0.00 0.00 0.00 4.18
635 636 0.664761 CCAAGTTGGCAGGCATATCG 59.335 55.000 9.46 0.00 0.00 2.92
636 637 1.952296 CTCCAAGTTGGCAGGCATATC 59.048 52.381 17.68 0.00 37.47 1.63
637 638 1.565759 TCTCCAAGTTGGCAGGCATAT 59.434 47.619 17.68 0.00 37.47 1.78
638 639 0.991146 TCTCCAAGTTGGCAGGCATA 59.009 50.000 17.68 0.00 37.47 3.14
639 640 0.112995 TTCTCCAAGTTGGCAGGCAT 59.887 50.000 17.68 0.00 37.47 4.40
640 641 0.538057 CTTCTCCAAGTTGGCAGGCA 60.538 55.000 17.68 0.00 37.47 4.75
641 642 1.246737 CCTTCTCCAAGTTGGCAGGC 61.247 60.000 17.68 0.00 37.47 4.85
642 643 0.610232 CCCTTCTCCAAGTTGGCAGG 60.610 60.000 17.68 19.30 37.47 4.85
643 644 1.246737 GCCCTTCTCCAAGTTGGCAG 61.247 60.000 17.68 14.63 37.08 4.85
644 645 1.228552 GCCCTTCTCCAAGTTGGCA 60.229 57.895 17.68 3.04 37.08 4.92
645 646 0.613012 ATGCCCTTCTCCAAGTTGGC 60.613 55.000 17.68 4.04 37.47 4.52
646 647 1.467920 GATGCCCTTCTCCAAGTTGG 58.532 55.000 16.36 16.36 39.43 3.77
661 662 3.063997 CACGTGTTTCTTCTATGGGATGC 59.936 47.826 7.58 0.00 0.00 3.91
663 664 3.270877 GCACGTGTTTCTTCTATGGGAT 58.729 45.455 18.38 0.00 0.00 3.85
829 833 4.448976 GGAAGGAAGGGGGCAGGC 62.449 72.222 0.00 0.00 0.00 4.85
830 834 2.941025 TGGAAGGAAGGGGGCAGG 60.941 66.667 0.00 0.00 0.00 4.85
832 836 3.264845 GGTGGAAGGAAGGGGGCA 61.265 66.667 0.00 0.00 0.00 5.36
833 837 2.500815 GAAGGTGGAAGGAAGGGGGC 62.501 65.000 0.00 0.00 0.00 5.80
834 838 0.846870 AGAAGGTGGAAGGAAGGGGG 60.847 60.000 0.00 0.00 0.00 5.40
837 841 3.560239 GGAGAAAGAAGGTGGAAGGAAGG 60.560 52.174 0.00 0.00 0.00 3.46
838 842 3.560239 GGGAGAAAGAAGGTGGAAGGAAG 60.560 52.174 0.00 0.00 0.00 3.46
839 843 2.375509 GGGAGAAAGAAGGTGGAAGGAA 59.624 50.000 0.00 0.00 0.00 3.36
840 844 1.985895 GGGAGAAAGAAGGTGGAAGGA 59.014 52.381 0.00 0.00 0.00 3.36
864 868 4.257267 AGTGACACTGACATCGATGAAA 57.743 40.909 31.33 16.94 0.00 2.69
934 946 0.299895 GTGAAGATGCGCTCGATGTG 59.700 55.000 9.73 0.00 0.00 3.21
957 977 0.331278 ATCAATTCCGTGGGGCTTGA 59.669 50.000 0.00 0.00 38.34 3.02
964 984 4.941263 TCTTGGTCTTTATCAATTCCGTGG 59.059 41.667 0.00 0.00 0.00 4.94
993 1013 6.682113 GCTCGGATTCTTGTACCATGTAGTTA 60.682 42.308 0.00 0.00 0.00 2.24
1719 1794 3.854669 CTCGCCAAGCCCGGAGAT 61.855 66.667 0.73 0.00 34.09 2.75
1934 2013 2.762535 TCGGAGTTGATCTTTGGGAC 57.237 50.000 0.00 0.00 0.00 4.46
1940 2258 3.805108 GCATAGGCATCGGAGTTGATCTT 60.805 47.826 0.00 0.00 40.72 2.40
1965 2283 2.416547 GGGCAGCTGCATTATATGTACG 59.583 50.000 37.63 0.00 44.36 3.67
1988 2315 4.080413 TGTTGGAGATGCTCATTGTCCATA 60.080 41.667 12.75 6.00 35.46 2.74
1991 2318 2.681848 CTGTTGGAGATGCTCATTGTCC 59.318 50.000 0.00 5.65 31.08 4.02
2053 2389 6.514063 TGTTTGAGATGATGCAAAATTCACA 58.486 32.000 0.00 0.00 35.95 3.58
2080 2416 5.182001 GCGCCCTATTTTTACATCATCTGAT 59.818 40.000 0.00 0.00 34.56 2.90
2103 2447 2.070783 CACATGTTGGAGCAAAATGGC 58.929 47.619 0.00 0.00 41.79 4.40
2127 2471 7.927092 TGTATTGATGTTTTCATGCCCAATATG 59.073 33.333 0.00 0.00 41.05 1.78
2138 2482 9.880064 CAAATTTGCAATGTATTGATGTTTTCA 57.120 25.926 5.01 0.00 40.14 2.69
2191 2535 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2193 2537 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2227 2571 9.716507 CCGTTCCATAATGTAAGATGTTTTTAG 57.283 33.333 0.00 0.00 0.00 1.85
2228 2572 9.451002 TCCGTTCCATAATGTAAGATGTTTTTA 57.549 29.630 0.00 0.00 0.00 1.52
2229 2573 8.343168 TCCGTTCCATAATGTAAGATGTTTTT 57.657 30.769 0.00 0.00 0.00 1.94
2230 2574 7.067008 CCTCCGTTCCATAATGTAAGATGTTTT 59.933 37.037 0.00 0.00 0.00 2.43
2231 2575 6.542370 CCTCCGTTCCATAATGTAAGATGTTT 59.458 38.462 0.00 0.00 0.00 2.83
2232 2576 6.055588 CCTCCGTTCCATAATGTAAGATGTT 58.944 40.000 0.00 0.00 0.00 2.71
2233 2577 5.454755 CCCTCCGTTCCATAATGTAAGATGT 60.455 44.000 0.00 0.00 0.00 3.06
2234 2578 4.997395 CCCTCCGTTCCATAATGTAAGATG 59.003 45.833 0.00 0.00 0.00 2.90
2235 2579 4.905456 TCCCTCCGTTCCATAATGTAAGAT 59.095 41.667 0.00 0.00 0.00 2.40
2236 2580 4.291792 TCCCTCCGTTCCATAATGTAAGA 58.708 43.478 0.00 0.00 0.00 2.10
2237 2581 4.101119 ACTCCCTCCGTTCCATAATGTAAG 59.899 45.833 0.00 0.00 0.00 2.34
2238 2582 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
2239 2583 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
2240 2584 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
2241 2585 3.641906 ACTACTCCCTCCGTTCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
2242 2586 3.924922 ACTACTCCCTCCGTTCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
2243 2587 3.393426 ACTACTCCCTCCGTTCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
2244 2588 3.053095 AGAACTACTCCCTCCGTTCCATA 60.053 47.826 0.00 0.00 37.15 2.74
2245 2589 2.108970 GAACTACTCCCTCCGTTCCAT 58.891 52.381 0.00 0.00 31.89 3.41
2246 2590 1.076677 AGAACTACTCCCTCCGTTCCA 59.923 52.381 0.00 0.00 37.15 3.53
2247 2591 1.477295 CAGAACTACTCCCTCCGTTCC 59.523 57.143 0.00 0.00 37.15 3.62
2248 2592 2.444421 TCAGAACTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 36.81 3.95
2249 2593 2.599408 TCAGAACTACTCCCTCCGTT 57.401 50.000 0.00 0.00 0.00 4.44
2250 2594 2.830651 ATCAGAACTACTCCCTCCGT 57.169 50.000 0.00 0.00 0.00 4.69
2251 2595 3.552875 TGTATCAGAACTACTCCCTCCG 58.447 50.000 0.00 0.00 0.00 4.63
2252 2596 5.422650 AGTTTGTATCAGAACTACTCCCTCC 59.577 44.000 0.00 0.00 34.52 4.30
2253 2597 6.532988 AGTTTGTATCAGAACTACTCCCTC 57.467 41.667 0.00 0.00 34.52 4.30
2254 2598 8.431910 TTTAGTTTGTATCAGAACTACTCCCT 57.568 34.615 0.00 0.00 37.90 4.20
2255 2599 9.152595 CTTTTAGTTTGTATCAGAACTACTCCC 57.847 37.037 0.00 0.00 37.90 4.30
2256 2600 8.657729 GCTTTTAGTTTGTATCAGAACTACTCC 58.342 37.037 0.00 0.00 37.90 3.85
2257 2601 9.204570 TGCTTTTAGTTTGTATCAGAACTACTC 57.795 33.333 0.00 0.00 37.90 2.59
2258 2602 9.726438 ATGCTTTTAGTTTGTATCAGAACTACT 57.274 29.630 0.00 0.00 37.90 2.57
2261 2605 9.726438 ACTATGCTTTTAGTTTGTATCAGAACT 57.274 29.630 0.00 0.00 39.32 3.01
2264 2608 9.162764 GGAACTATGCTTTTAGTTTGTATCAGA 57.837 33.333 8.15 0.00 41.36 3.27
2265 2609 8.946085 TGGAACTATGCTTTTAGTTTGTATCAG 58.054 33.333 8.15 0.00 41.36 2.90
2266 2610 8.856153 TGGAACTATGCTTTTAGTTTGTATCA 57.144 30.769 8.15 0.00 41.36 2.15
2334 2678 6.255237 TCTGATGAGTAGTTCGTAGTAGTTCG 59.745 42.308 0.00 0.00 0.00 3.95
2339 2683 6.127111 ACCTCTCTGATGAGTAGTTCGTAGTA 60.127 42.308 0.00 0.00 40.98 1.82
2343 2687 3.942748 GACCTCTCTGATGAGTAGTTCGT 59.057 47.826 0.00 0.00 40.98 3.85
2358 2705 0.748729 ATCGACTGGGACGACCTCTC 60.749 60.000 3.44 0.00 42.37 3.20
2365 2712 0.517755 CTCCGATATCGACTGGGACG 59.482 60.000 26.32 7.03 43.02 4.79
2425 2772 0.678950 TCAGACGATGGTTGTGCTCA 59.321 50.000 0.00 0.00 0.00 4.26
2437 2784 1.827399 GAAGTTGGCCCCTCAGACGA 61.827 60.000 0.00 0.00 0.00 4.20
2469 2816 3.641906 AGAAGGAGGAGAAGACGAAAACA 59.358 43.478 0.00 0.00 0.00 2.83
2472 2819 4.101119 ACAAAGAAGGAGGAGAAGACGAAA 59.899 41.667 0.00 0.00 0.00 3.46
2476 2823 4.882842 AGACAAAGAAGGAGGAGAAGAC 57.117 45.455 0.00 0.00 0.00 3.01
2477 2824 4.656112 ACAAGACAAAGAAGGAGGAGAAGA 59.344 41.667 0.00 0.00 0.00 2.87
2482 2838 3.494398 CCGAACAAGACAAAGAAGGAGGA 60.494 47.826 0.00 0.00 0.00 3.71
2503 2860 0.028505 TACGAGTTCTATGCGTCGCC 59.971 55.000 15.88 0.00 39.24 5.54
2519 2876 1.063327 CTCGAGCAGGCAGAGTACG 59.937 63.158 0.00 0.00 0.00 3.67
2540 2897 0.781787 GTTTGCGGCGGAAAATCAAC 59.218 50.000 27.61 12.50 0.00 3.18
2541 2898 0.319125 GGTTTGCGGCGGAAAATCAA 60.319 50.000 27.61 9.69 0.00 2.57
2542 2899 1.175983 AGGTTTGCGGCGGAAAATCA 61.176 50.000 27.61 3.31 0.00 2.57
2583 2940 0.313987 ATCAGTGTGACGCTTGTCGA 59.686 50.000 0.00 0.00 45.95 4.20
2587 2944 2.407090 TCTTGATCAGTGTGACGCTTG 58.593 47.619 0.00 0.00 0.00 4.01
2595 2952 4.527509 ACAGATCGTTCTTGATCAGTGT 57.472 40.909 6.52 0.75 45.81 3.55
2614 2971 1.402852 CGCGGAGAAGAATGAGACACA 60.403 52.381 0.00 0.00 0.00 3.72
2670 3027 1.271856 TTGACAACCAGGCCGATCTA 58.728 50.000 0.00 0.00 0.00 1.98
2676 3033 1.682344 GGGGATTGACAACCAGGCC 60.682 63.158 0.00 0.00 0.00 5.19
2695 3052 1.192534 GAAGTCGCACTTGAACTTCCG 59.807 52.381 6.31 0.00 38.80 4.30
2697 3054 1.192534 CCGAAGTCGCACTTGAACTTC 59.807 52.381 6.31 11.89 38.80 3.01
2751 3109 2.125912 GTCTGACATCGCCGCACT 60.126 61.111 2.24 0.00 0.00 4.40
2758 4683 0.457851 GTGGGAGGAGTCTGACATCG 59.542 60.000 10.88 0.00 0.00 3.84
2799 4724 2.628178 CAGCCGAGATAACATAGGACCA 59.372 50.000 0.00 0.00 0.00 4.02
2807 4732 2.098607 CCGTTACTCAGCCGAGATAACA 59.901 50.000 3.36 0.00 42.34 2.41
2816 4741 2.588856 AATCCGGCCGTTACTCAGCC 62.589 60.000 26.12 0.00 43.53 4.85
2851 5732 4.329545 GCTCCACCGGCTTCCACA 62.330 66.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.