Multiple sequence alignment - TraesCS7D01G370700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G370700 chr7D 100.000 4257 0 0 1 4257 479113246 479108990 0.000000e+00 7862.0
1 TraesCS7D01G370700 chr7D 94.444 54 2 1 297 350 534625424 534625372 9.810000e-12 82.4
2 TraesCS7D01G370700 chr7D 82.090 67 9 3 249 313 40195384 40195319 2.000000e-03 54.7
3 TraesCS7D01G370700 chr7B 95.325 2845 96 14 526 3348 504838439 504835610 0.000000e+00 4482.0
4 TraesCS7D01G370700 chr7B 89.787 705 27 14 3350 4021 504835555 504834863 0.000000e+00 861.0
5 TraesCS7D01G370700 chr7B 84.615 338 36 5 2718 3054 553148263 553147941 5.310000e-84 322.0
6 TraesCS7D01G370700 chr7B 94.030 134 8 0 94 227 504838715 504838582 2.010000e-48 204.0
7 TraesCS7D01G370700 chr7B 89.474 114 12 0 1119 1232 553148272 553148385 1.230000e-30 145.0
8 TraesCS7D01G370700 chr7B 81.053 95 14 4 227 318 743789821 743789728 5.900000e-09 73.1
9 TraesCS7D01G370700 chr7A 91.592 2236 112 37 1120 3335 515983536 515985715 0.000000e+00 3018.0
10 TraesCS7D01G370700 chr7A 84.311 631 46 21 3406 4021 515985813 515986405 6.180000e-158 568.0
11 TraesCS7D01G370700 chr7A 89.831 236 19 3 4021 4255 550280680 550280449 8.950000e-77 298.0
12 TraesCS7D01G370700 chr7A 87.440 207 11 8 635 832 515983267 515983467 1.540000e-54 224.0
13 TraesCS7D01G370700 chr3A 91.949 236 18 1 4020 4254 51887379 51887614 3.170000e-86 329.0
14 TraesCS7D01G370700 chr3A 86.400 125 16 1 373 496 436270061 436269937 7.420000e-28 135.0
15 TraesCS7D01G370700 chr3A 82.828 99 16 1 384 481 303835739 303835641 2.110000e-13 87.9
16 TraesCS7D01G370700 chr1A 91.915 235 18 1 4022 4255 187772571 187772805 1.140000e-85 327.0
17 TraesCS7D01G370700 chr6A 91.064 235 20 1 4022 4255 223798259 223798025 2.470000e-82 316.0
18 TraesCS7D01G370700 chr6A 86.957 92 10 2 260 350 105637507 105637417 7.530000e-18 102.0
19 TraesCS7D01G370700 chr2A 90.678 236 21 1 4021 4255 40482558 40482323 3.200000e-81 313.0
20 TraesCS7D01G370700 chr6D 90.558 233 21 1 4024 4255 292274695 292274463 1.490000e-79 307.0
21 TraesCS7D01G370700 chr6D 82.105 95 11 5 228 318 446930719 446930811 4.560000e-10 76.8
22 TraesCS7D01G370700 chr3B 90.213 235 21 2 4022 4255 616312470 616312237 5.350000e-79 305.0
23 TraesCS7D01G370700 chr3B 88.000 125 14 1 373 496 109094940 109094816 3.430000e-31 147.0
24 TraesCS7D01G370700 chr3B 89.381 113 11 1 263 374 109095080 109094968 1.600000e-29 141.0
25 TraesCS7D01G370700 chr4B 90.213 235 19 3 4022 4255 193547950 193547719 1.920000e-78 303.0
26 TraesCS7D01G370700 chr5D 89.407 236 24 1 4021 4255 288133487 288133722 3.220000e-76 296.0
27 TraesCS7D01G370700 chr5D 97.059 34 1 0 480 513 256412704 256412737 1.650000e-04 58.4
28 TraesCS7D01G370700 chr4D 89.655 145 13 2 228 371 80821017 80820874 2.610000e-42 183.0
29 TraesCS7D01G370700 chr4D 83.448 145 19 4 372 511 94425740 94425884 3.450000e-26 130.0
30 TraesCS7D01G370700 chr4D 86.747 83 10 1 249 330 439165888 439165970 1.630000e-14 91.6
31 TraesCS7D01G370700 chr3D 85.616 146 14 3 373 517 109273394 109273255 3.430000e-31 147.0
32 TraesCS7D01G370700 chr2D 86.400 125 15 2 228 350 602264017 602264141 7.420000e-28 135.0
33 TraesCS7D01G370700 chr2D 82.857 105 16 2 228 330 631523999 631523895 4.530000e-15 93.5
34 TraesCS7D01G370700 chr1B 80.769 104 17 3 228 329 256634758 256634656 1.270000e-10 78.7
35 TraesCS7D01G370700 chr5A 89.831 59 5 1 372 429 524711046 524711104 1.640000e-09 75.0
36 TraesCS7D01G370700 chr2B 95.349 43 2 0 288 330 699105807 699105765 7.640000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G370700 chr7D 479108990 479113246 4256 True 7862 7862 100.000000 1 4257 1 chr7D.!!$R2 4256
1 TraesCS7D01G370700 chr7B 504834863 504838715 3852 True 1849 4482 93.047333 94 4021 3 chr7B.!!$R3 3927
2 TraesCS7D01G370700 chr7A 515983267 515986405 3138 False 1270 3018 87.781000 635 4021 3 chr7A.!!$F1 3386

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.035881 ATGTGCATATCTCAGGCGGG 59.964 55.0 0.00 0.0 36.49 6.13 F
997 1156 0.249868 CTTCAAGTGCTCGTCCACCA 60.250 55.0 4.94 0.0 36.38 4.17 F
1069 1228 0.318120 TTCCACTACGTTTCCCGACC 59.682 55.0 0.00 0.0 40.70 4.79 F
2345 2513 0.607217 TGCATTGCAGGTGAGTCCAG 60.607 55.0 7.38 0.0 39.02 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1968 0.306533 TTTTCGTTGCCGTGCTCTTC 59.693 50.000 0.00 0.00 35.01 2.87 R
2023 2191 1.076777 CCGATGCCCCCTTTGATGT 60.077 57.895 0.00 0.00 0.00 3.06 R
2370 2543 1.439679 CGAACCTAACTGCTCCAACC 58.560 55.000 0.00 0.00 0.00 3.77 R
3524 3828 0.106469 TCCTCTCCACCTCGATCTGG 60.106 60.000 2.63 2.63 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.409201 GCATGCTAAGATGCTCCCA 57.591 52.632 11.37 0.00 44.57 4.37
24 25 1.683943 GCATGCTAAGATGCTCCCAA 58.316 50.000 11.37 0.00 44.57 4.12
25 26 1.336125 GCATGCTAAGATGCTCCCAAC 59.664 52.381 11.37 0.00 44.57 3.77
26 27 2.646930 CATGCTAAGATGCTCCCAACA 58.353 47.619 0.00 0.00 0.00 3.33
27 28 2.408271 TGCTAAGATGCTCCCAACAG 57.592 50.000 0.00 0.00 0.00 3.16
28 29 1.065199 TGCTAAGATGCTCCCAACAGG 60.065 52.381 0.00 0.00 0.00 4.00
29 30 1.065126 GCTAAGATGCTCCCAACAGGT 60.065 52.381 0.00 0.00 36.75 4.00
30 31 2.911484 CTAAGATGCTCCCAACAGGTC 58.089 52.381 0.00 0.00 36.75 3.85
31 32 0.329596 AAGATGCTCCCAACAGGTCC 59.670 55.000 0.00 0.00 36.75 4.46
32 33 0.548682 AGATGCTCCCAACAGGTCCT 60.549 55.000 0.00 0.00 36.75 3.85
33 34 0.107459 GATGCTCCCAACAGGTCCTC 60.107 60.000 0.00 0.00 36.75 3.71
34 35 1.566298 ATGCTCCCAACAGGTCCTCC 61.566 60.000 0.00 0.00 36.75 4.30
35 36 2.224159 GCTCCCAACAGGTCCTCCA 61.224 63.158 0.00 0.00 36.75 3.86
36 37 1.679898 CTCCCAACAGGTCCTCCAC 59.320 63.158 0.00 0.00 36.75 4.02
37 38 1.074090 TCCCAACAGGTCCTCCACA 60.074 57.895 0.00 0.00 36.75 4.17
38 39 0.475632 TCCCAACAGGTCCTCCACAT 60.476 55.000 0.00 0.00 36.75 3.21
39 40 0.322816 CCCAACAGGTCCTCCACATG 60.323 60.000 0.00 0.00 42.82 3.21
43 44 3.558674 CAGGTCCTCCACATGTTCC 57.441 57.895 0.00 0.00 31.79 3.62
44 45 0.391661 CAGGTCCTCCACATGTTCCG 60.392 60.000 0.00 0.00 31.79 4.30
45 46 0.836400 AGGTCCTCCACATGTTCCGT 60.836 55.000 0.00 0.00 35.89 4.69
46 47 0.391263 GGTCCTCCACATGTTCCGTC 60.391 60.000 0.00 0.00 0.00 4.79
47 48 0.608640 GTCCTCCACATGTTCCGTCT 59.391 55.000 0.00 0.00 0.00 4.18
48 49 1.002087 GTCCTCCACATGTTCCGTCTT 59.998 52.381 0.00 0.00 0.00 3.01
49 50 1.697432 TCCTCCACATGTTCCGTCTTT 59.303 47.619 0.00 0.00 0.00 2.52
50 51 1.806542 CCTCCACATGTTCCGTCTTTG 59.193 52.381 0.00 0.00 0.00 2.77
51 52 2.549992 CCTCCACATGTTCCGTCTTTGA 60.550 50.000 0.00 0.00 0.00 2.69
52 53 2.480419 CTCCACATGTTCCGTCTTTGAC 59.520 50.000 0.00 0.00 0.00 3.18
64 65 3.944422 GTCTTTGACGAACTGCTTGAA 57.056 42.857 0.00 0.00 0.00 2.69
65 66 4.474226 GTCTTTGACGAACTGCTTGAAT 57.526 40.909 0.00 0.00 0.00 2.57
66 67 4.458708 GTCTTTGACGAACTGCTTGAATC 58.541 43.478 0.00 0.00 0.00 2.52
67 68 4.024893 GTCTTTGACGAACTGCTTGAATCA 60.025 41.667 0.00 0.00 0.00 2.57
68 69 3.878086 TTGACGAACTGCTTGAATCAC 57.122 42.857 0.00 0.00 0.00 3.06
69 70 1.792367 TGACGAACTGCTTGAATCACG 59.208 47.619 0.00 0.00 0.00 4.35
70 71 1.126846 GACGAACTGCTTGAATCACGG 59.873 52.381 0.00 0.00 0.00 4.94
71 72 0.443869 CGAACTGCTTGAATCACGGG 59.556 55.000 0.00 0.00 0.00 5.28
72 73 1.808411 GAACTGCTTGAATCACGGGA 58.192 50.000 0.00 0.00 0.00 5.14
73 74 1.734465 GAACTGCTTGAATCACGGGAG 59.266 52.381 0.00 3.27 0.00 4.30
74 75 0.976641 ACTGCTTGAATCACGGGAGA 59.023 50.000 9.93 0.00 0.00 3.71
75 76 1.338200 ACTGCTTGAATCACGGGAGAC 60.338 52.381 9.93 0.00 0.00 3.36
101 102 1.536644 AAAAACCCTAGGTCCCCACA 58.463 50.000 8.29 0.00 33.12 4.17
110 111 0.399949 AGGTCCCCACACTGTCAAGA 60.400 55.000 0.00 0.00 0.00 3.02
127 128 0.905357 AGATCGGGAAGGTGAACCAG 59.095 55.000 1.62 0.00 38.89 4.00
179 180 1.943340 GGAAGAACATGGGAAGATCGC 59.057 52.381 0.00 0.00 0.00 4.58
188 189 2.703409 GAAGATCGCGCGCACAAT 59.297 55.556 32.61 20.63 0.00 2.71
198 199 0.917259 CGCGCACAATGTAGACTCTC 59.083 55.000 8.75 0.00 0.00 3.20
232 233 3.792401 CGGAGGACATGCAAACTATACA 58.208 45.455 0.00 0.00 0.00 2.29
233 234 4.380531 CGGAGGACATGCAAACTATACAT 58.619 43.478 0.00 0.00 0.00 2.29
234 235 4.212004 CGGAGGACATGCAAACTATACATG 59.788 45.833 0.00 0.00 45.28 3.21
244 245 7.425577 TGCAAACTATACATGTGCATATCTC 57.574 36.000 9.11 0.00 40.14 2.75
245 246 6.991531 TGCAAACTATACATGTGCATATCTCA 59.008 34.615 9.11 0.00 40.14 3.27
246 247 7.172019 TGCAAACTATACATGTGCATATCTCAG 59.828 37.037 9.11 0.00 40.14 3.35
247 248 7.360691 GCAAACTATACATGTGCATATCTCAGG 60.361 40.741 9.11 0.00 35.28 3.86
248 249 5.728471 ACTATACATGTGCATATCTCAGGC 58.272 41.667 9.11 0.00 0.00 4.85
249 250 1.875009 ACATGTGCATATCTCAGGCG 58.125 50.000 0.00 0.00 36.49 5.52
250 251 1.154197 CATGTGCATATCTCAGGCGG 58.846 55.000 0.00 0.00 36.49 6.13
251 252 0.035881 ATGTGCATATCTCAGGCGGG 59.964 55.000 0.00 0.00 36.49 6.13
252 253 1.963338 GTGCATATCTCAGGCGGGC 60.963 63.158 0.00 0.00 36.49 6.13
253 254 2.359230 GCATATCTCAGGCGGGCC 60.359 66.667 0.18 0.18 0.00 5.80
254 255 2.047844 CATATCTCAGGCGGGCCG 60.048 66.667 24.35 24.35 41.95 6.13
255 256 3.314331 ATATCTCAGGCGGGCCGG 61.314 66.667 29.48 11.59 41.95 6.13
294 295 4.514781 AAAAGTCCGGTGCTAAAAATCC 57.485 40.909 0.00 0.00 0.00 3.01
295 296 2.871096 AGTCCGGTGCTAAAAATCCA 57.129 45.000 0.00 0.00 0.00 3.41
296 297 2.711542 AGTCCGGTGCTAAAAATCCAG 58.288 47.619 0.00 0.00 0.00 3.86
297 298 1.743394 GTCCGGTGCTAAAAATCCAGG 59.257 52.381 0.00 0.00 0.00 4.45
298 299 0.455815 CCGGTGCTAAAAATCCAGGC 59.544 55.000 0.00 0.00 0.00 4.85
299 300 0.455815 CGGTGCTAAAAATCCAGGCC 59.544 55.000 0.00 0.00 0.00 5.19
300 301 1.852633 GGTGCTAAAAATCCAGGCCT 58.147 50.000 0.00 0.00 0.00 5.19
301 302 1.478105 GGTGCTAAAAATCCAGGCCTG 59.522 52.381 26.87 26.87 0.00 4.85
302 303 2.446435 GTGCTAAAAATCCAGGCCTGA 58.554 47.619 34.91 19.99 0.00 3.86
303 304 2.424956 GTGCTAAAAATCCAGGCCTGAG 59.575 50.000 34.91 23.01 0.00 3.35
304 305 1.406898 GCTAAAAATCCAGGCCTGAGC 59.593 52.381 34.91 26.81 38.76 4.26
338 339 1.261619 GCCATCGAGCCTACAAAATCG 59.738 52.381 0.00 0.00 36.54 3.34
339 340 1.867233 CCATCGAGCCTACAAAATCGG 59.133 52.381 0.00 0.00 35.91 4.18
340 341 1.867233 CATCGAGCCTACAAAATCGGG 59.133 52.381 0.00 0.00 35.91 5.14
341 342 0.461339 TCGAGCCTACAAAATCGGGC 60.461 55.000 0.00 0.00 44.38 6.13
342 343 1.436983 CGAGCCTACAAAATCGGGCC 61.437 60.000 0.00 0.00 45.07 5.80
343 344 1.076995 AGCCTACAAAATCGGGCCC 60.077 57.895 13.57 13.57 45.07 5.80
344 345 1.379309 GCCTACAAAATCGGGCCCA 60.379 57.895 24.92 9.77 38.77 5.36
345 346 0.968393 GCCTACAAAATCGGGCCCAA 60.968 55.000 24.92 2.23 38.77 4.12
346 347 1.102978 CCTACAAAATCGGGCCCAAG 58.897 55.000 24.92 6.44 0.00 3.61
347 348 0.455815 CTACAAAATCGGGCCCAAGC 59.544 55.000 24.92 0.00 38.76 4.01
357 358 4.198087 GCCCAAGCCCAAGAAAGT 57.802 55.556 0.00 0.00 0.00 2.66
358 359 1.967535 GCCCAAGCCCAAGAAAGTC 59.032 57.895 0.00 0.00 0.00 3.01
359 360 1.536073 GCCCAAGCCCAAGAAAGTCC 61.536 60.000 0.00 0.00 0.00 3.85
360 361 1.244019 CCCAAGCCCAAGAAAGTCCG 61.244 60.000 0.00 0.00 0.00 4.79
361 362 0.250727 CCAAGCCCAAGAAAGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
362 363 0.875059 CAAGCCCAAGAAAGTCCGAC 59.125 55.000 0.00 0.00 0.00 4.79
363 364 0.602905 AAGCCCAAGAAAGTCCGACG 60.603 55.000 0.00 0.00 0.00 5.12
364 365 2.677979 GCCCAAGAAAGTCCGACGC 61.678 63.158 0.00 0.00 0.00 5.19
365 366 2.380410 CCCAAGAAAGTCCGACGCG 61.380 63.158 3.53 3.53 0.00 6.01
376 377 4.514569 CGACGCGGCCCGATTTTG 62.515 66.667 18.74 0.00 41.02 2.44
377 378 3.428282 GACGCGGCCCGATTTTGT 61.428 61.111 18.74 0.00 41.02 2.83
378 379 3.661025 GACGCGGCCCGATTTTGTG 62.661 63.158 18.74 2.25 41.02 3.33
381 382 4.474846 CGGCCCGATTTTGTGCGG 62.475 66.667 0.00 0.00 46.80 5.69
385 386 4.128388 CCGATTTTGTGCGGGCCC 62.128 66.667 13.57 13.57 43.67 5.80
386 387 3.369400 CGATTTTGTGCGGGCCCA 61.369 61.111 24.92 0.00 0.00 5.36
387 388 2.925262 CGATTTTGTGCGGGCCCAA 61.925 57.895 24.92 7.64 0.00 4.12
388 389 1.079888 GATTTTGTGCGGGCCCAAG 60.080 57.895 24.92 7.60 0.00 3.61
389 390 3.238755 ATTTTGTGCGGGCCCAAGC 62.239 57.895 24.92 19.16 38.76 4.01
420 421 4.452733 CCCGTCGGGCTCAGTTCC 62.453 72.222 19.48 0.00 35.35 3.62
421 422 3.691342 CCGTCGGGCTCAGTTCCA 61.691 66.667 2.34 0.00 0.00 3.53
422 423 2.125912 CGTCGGGCTCAGTTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
423 424 2.266055 GTCGGGCTCAGTTCCAGG 59.734 66.667 0.00 0.00 0.00 4.45
424 425 3.706373 TCGGGCTCAGTTCCAGGC 61.706 66.667 0.00 0.00 35.69 4.85
427 428 4.785453 GGCTCAGTTCCAGGCCCG 62.785 72.222 0.00 0.00 38.77 6.13
428 429 3.706373 GCTCAGTTCCAGGCCCGA 61.706 66.667 0.00 0.00 0.00 5.14
429 430 2.581354 CTCAGTTCCAGGCCCGAG 59.419 66.667 0.00 0.00 0.00 4.63
430 431 3.672295 CTCAGTTCCAGGCCCGAGC 62.672 68.421 0.00 0.00 38.76 5.03
474 475 4.237809 GCGCGGCCCGAGATTTTC 62.238 66.667 12.23 0.00 40.02 2.29
475 476 2.817834 CGCGGCCCGAGATTTTCA 60.818 61.111 7.68 0.00 40.02 2.69
476 477 2.813179 CGCGGCCCGAGATTTTCAG 61.813 63.158 7.68 0.00 40.02 3.02
477 478 2.472909 GCGGCCCGAGATTTTCAGG 61.473 63.158 7.68 0.00 0.00 3.86
478 479 2.472909 CGGCCCGAGATTTTCAGGC 61.473 63.158 0.00 0.00 46.81 4.85
479 480 3.514417 GCCCGAGATTTTCAGGCC 58.486 61.111 0.00 0.00 42.57 5.19
480 481 2.472909 GCCCGAGATTTTCAGGCCG 61.473 63.158 0.00 0.00 42.57 6.13
481 482 1.819632 CCCGAGATTTTCAGGCCGG 60.820 63.158 0.00 0.00 36.98 6.13
482 483 1.819632 CCGAGATTTTCAGGCCGGG 60.820 63.158 2.18 0.00 33.94 5.73
483 484 1.078426 CGAGATTTTCAGGCCGGGT 60.078 57.895 2.18 0.00 0.00 5.28
484 485 0.676782 CGAGATTTTCAGGCCGGGTT 60.677 55.000 2.18 0.00 0.00 4.11
485 486 0.811281 GAGATTTTCAGGCCGGGTTG 59.189 55.000 2.18 0.00 0.00 3.77
486 487 0.611896 AGATTTTCAGGCCGGGTTGG 60.612 55.000 2.18 0.00 42.50 3.77
487 488 1.604147 GATTTTCAGGCCGGGTTGGG 61.604 60.000 2.18 0.00 38.63 4.12
488 489 2.380571 ATTTTCAGGCCGGGTTGGGT 62.381 55.000 2.18 0.00 38.63 4.51
489 490 2.591193 TTTTCAGGCCGGGTTGGGTT 62.591 55.000 2.18 0.00 38.63 4.11
490 491 3.801068 TTCAGGCCGGGTTGGGTTG 62.801 63.158 2.18 0.00 38.63 3.77
571 716 3.160269 ACAAGGCAAGAAATTGGAGGAG 58.840 45.455 0.00 0.00 0.00 3.69
607 752 2.139323 ACACTACGATAGCACTCCCA 57.861 50.000 0.00 0.00 42.67 4.37
654 799 5.873732 GCATTAGCTTCGAAAGTCAAGAAT 58.126 37.500 0.00 0.00 37.91 2.40
683 829 2.723273 AGAAAAGGGGAATTGGCGTAG 58.277 47.619 0.00 0.00 0.00 3.51
779 930 0.474184 CCTCGCCCCCATGTTTCTAT 59.526 55.000 0.00 0.00 0.00 1.98
894 1053 1.522569 GGCGTACTGCTCCATTCCT 59.477 57.895 9.06 0.00 45.43 3.36
899 1058 1.414550 GTACTGCTCCATTCCTCCTCC 59.585 57.143 0.00 0.00 0.00 4.30
908 1067 0.565674 ATTCCTCCTCCTCCTCCTCC 59.434 60.000 0.00 0.00 0.00 4.30
922 1081 3.204827 CTCCTTCAATGCCGCCCG 61.205 66.667 0.00 0.00 0.00 6.13
958 1117 0.808453 TCTAATAACTGCGCCGCACC 60.808 55.000 8.16 0.00 33.79 5.01
970 1129 1.729881 CCGCACCCGTACTAGGTAC 59.270 63.158 4.29 0.00 35.24 3.34
991 1150 2.095668 CGAGTAGACTTCAAGTGCTCGT 60.096 50.000 19.58 1.38 37.10 4.18
994 1153 1.040646 AGACTTCAAGTGCTCGTCCA 58.959 50.000 0.00 0.00 0.00 4.02
995 1154 1.140816 GACTTCAAGTGCTCGTCCAC 58.859 55.000 0.00 0.93 35.98 4.02
996 1155 0.249911 ACTTCAAGTGCTCGTCCACC 60.250 55.000 0.00 0.00 36.38 4.61
997 1156 0.249868 CTTCAAGTGCTCGTCCACCA 60.250 55.000 4.94 0.00 36.38 4.17
1044 1203 1.216444 CCTCGTGCTCTTGCTGCTA 59.784 57.895 0.00 0.00 40.48 3.49
1047 1206 0.318441 TCGTGCTCTTGCTGCTAGTT 59.682 50.000 10.72 0.00 40.48 2.24
1056 1215 3.071602 TCTTGCTGCTAGTTCTTTCCACT 59.928 43.478 10.72 0.00 0.00 4.00
1058 1217 3.926616 TGCTGCTAGTTCTTTCCACTAC 58.073 45.455 0.00 0.00 0.00 2.73
1060 1219 3.614390 GCTGCTAGTTCTTTCCACTACGT 60.614 47.826 0.00 0.00 0.00 3.57
1069 1228 0.318120 TTCCACTACGTTTCCCGACC 59.682 55.000 0.00 0.00 40.70 4.79
1704 1863 3.736100 CACGCCGGCAATGCTTCA 61.736 61.111 28.98 0.00 0.00 3.02
2345 2513 0.607217 TGCATTGCAGGTGAGTCCAG 60.607 55.000 7.38 0.00 39.02 3.86
2428 2601 1.598962 GCCAGTGTGAGCTGAGCAA 60.599 57.895 7.39 0.00 38.70 3.91
2453 2626 8.369218 ACATAAAGTCTTGGCTTTTGAAATTG 57.631 30.769 5.52 0.00 39.22 2.32
2738 2917 2.126580 CTCGTCCCGACCAACGTC 60.127 66.667 0.00 0.00 39.78 4.34
2945 3124 2.757099 GGCAAGGGGCTGGACATG 60.757 66.667 0.00 0.00 44.01 3.21
3233 3422 0.666274 AGTGCACCATACACGTCACG 60.666 55.000 14.63 0.00 42.94 4.35
3303 3494 2.668457 CAGTAGCAGTGACAATTCCGTC 59.332 50.000 0.00 0.00 36.40 4.79
3348 3543 1.831389 TTTCTCTCGTGTTGCTGCGC 61.831 55.000 0.00 0.00 0.00 6.09
3425 3722 0.953960 ATCGACAAGAACCAACGGGC 60.954 55.000 0.00 0.00 37.90 6.13
3433 3730 1.102978 GAACCAACGGGCAGCATTAT 58.897 50.000 0.00 0.00 37.90 1.28
3434 3731 0.817013 AACCAACGGGCAGCATTATG 59.183 50.000 0.00 0.00 37.90 1.90
3462 3763 5.365021 AGTTCCAACATGATTAGGAGGAG 57.635 43.478 0.00 0.00 0.00 3.69
3480 3781 2.537401 GAGCAAGAAAAGATGCATGGC 58.463 47.619 2.46 0.00 44.95 4.40
3551 3861 2.772691 GGTGGAGAGGACGTAGGCG 61.773 68.421 0.00 0.00 44.93 5.52
3615 3929 6.228258 ACTAGCAAAAGGAGATGTAAAACGA 58.772 36.000 0.00 0.00 0.00 3.85
3616 3930 6.708949 ACTAGCAAAAGGAGATGTAAAACGAA 59.291 34.615 0.00 0.00 0.00 3.85
3617 3931 5.758924 AGCAAAAGGAGATGTAAAACGAAC 58.241 37.500 0.00 0.00 0.00 3.95
3637 3951 2.919602 ACCAACATGGGTTAGTGGAGAT 59.080 45.455 0.00 0.00 43.37 2.75
3701 4015 2.325661 TGAGATCTCACTGGGGTTGA 57.674 50.000 21.67 0.00 34.14 3.18
3842 4171 3.970410 TTGTGGGCAGGGAGGCTG 61.970 66.667 0.00 0.00 43.56 4.85
3894 4234 1.076632 TGGCTTGTTTCCACCGGTT 60.077 52.632 2.97 0.00 0.00 4.44
3942 4282 0.611200 CGATGTGGGTGTGGGTCTAA 59.389 55.000 0.00 0.00 0.00 2.10
3972 4312 1.798813 GACTAAGTTGGAAGCACACCG 59.201 52.381 0.00 0.00 0.00 4.94
4021 4361 2.182030 CCGTCCTGACTTCTCGGC 59.818 66.667 0.00 0.00 35.01 5.54
4022 4362 2.636412 CCGTCCTGACTTCTCGGCA 61.636 63.158 0.00 0.00 35.01 5.69
4023 4363 1.513158 CGTCCTGACTTCTCGGCAT 59.487 57.895 0.00 0.00 0.00 4.40
4024 4364 0.738975 CGTCCTGACTTCTCGGCATA 59.261 55.000 0.00 0.00 0.00 3.14
4025 4365 1.268794 CGTCCTGACTTCTCGGCATAG 60.269 57.143 0.00 0.00 0.00 2.23
4026 4366 1.751924 GTCCTGACTTCTCGGCATAGT 59.248 52.381 0.00 0.00 0.00 2.12
4027 4367 2.166664 GTCCTGACTTCTCGGCATAGTT 59.833 50.000 0.00 0.00 0.00 2.24
4028 4368 2.832129 TCCTGACTTCTCGGCATAGTTT 59.168 45.455 0.00 0.00 0.00 2.66
4029 4369 4.021229 TCCTGACTTCTCGGCATAGTTTA 58.979 43.478 0.00 0.00 0.00 2.01
4030 4370 4.464951 TCCTGACTTCTCGGCATAGTTTAA 59.535 41.667 0.00 0.00 0.00 1.52
4031 4371 5.046878 TCCTGACTTCTCGGCATAGTTTAAA 60.047 40.000 0.00 0.00 0.00 1.52
4032 4372 5.642063 CCTGACTTCTCGGCATAGTTTAAAA 59.358 40.000 0.00 0.00 0.00 1.52
4033 4373 6.148811 CCTGACTTCTCGGCATAGTTTAAAAA 59.851 38.462 0.00 0.00 0.00 1.94
4060 4400 0.725117 CGGAAATCGAACCGGAAAGG 59.275 55.000 9.46 0.00 44.59 3.11
4071 4411 2.389962 CCGGAAAGGTTATCGGTTCA 57.610 50.000 0.00 0.00 37.92 3.18
4072 4412 2.277084 CCGGAAAGGTTATCGGTTCAG 58.723 52.381 0.00 0.00 37.92 3.02
4073 4413 2.277084 CGGAAAGGTTATCGGTTCAGG 58.723 52.381 0.00 0.00 0.00 3.86
4074 4414 2.354403 CGGAAAGGTTATCGGTTCAGGT 60.354 50.000 0.00 0.00 0.00 4.00
4075 4415 3.682696 GGAAAGGTTATCGGTTCAGGTT 58.317 45.455 0.00 0.00 0.00 3.50
4076 4416 4.077108 GGAAAGGTTATCGGTTCAGGTTT 58.923 43.478 0.00 0.00 0.00 3.27
4077 4417 4.521639 GGAAAGGTTATCGGTTCAGGTTTT 59.478 41.667 0.00 0.00 0.00 2.43
4078 4418 5.010314 GGAAAGGTTATCGGTTCAGGTTTTT 59.990 40.000 0.00 0.00 0.00 1.94
4079 4419 6.207221 GGAAAGGTTATCGGTTCAGGTTTTTA 59.793 38.462 0.00 0.00 0.00 1.52
4080 4420 6.564709 AAGGTTATCGGTTCAGGTTTTTAC 57.435 37.500 0.00 0.00 0.00 2.01
4081 4421 5.872963 AGGTTATCGGTTCAGGTTTTTACT 58.127 37.500 0.00 0.00 0.00 2.24
4082 4422 7.008021 AGGTTATCGGTTCAGGTTTTTACTA 57.992 36.000 0.00 0.00 0.00 1.82
4083 4423 7.101700 AGGTTATCGGTTCAGGTTTTTACTAG 58.898 38.462 0.00 0.00 0.00 2.57
4084 4424 6.875726 GGTTATCGGTTCAGGTTTTTACTAGT 59.124 38.462 0.00 0.00 0.00 2.57
4085 4425 7.063898 GGTTATCGGTTCAGGTTTTTACTAGTC 59.936 40.741 0.00 0.00 0.00 2.59
4086 4426 4.549458 TCGGTTCAGGTTTTTACTAGTCG 58.451 43.478 0.00 0.00 0.00 4.18
4087 4427 4.278170 TCGGTTCAGGTTTTTACTAGTCGA 59.722 41.667 0.00 0.00 0.00 4.20
4088 4428 4.383948 CGGTTCAGGTTTTTACTAGTCGAC 59.616 45.833 7.70 7.70 0.00 4.20
4089 4429 4.687948 GGTTCAGGTTTTTACTAGTCGACC 59.312 45.833 13.01 3.74 0.00 4.79
4090 4430 4.164822 TCAGGTTTTTACTAGTCGACCG 57.835 45.455 13.01 6.42 32.55 4.79
4091 4431 2.665052 CAGGTTTTTACTAGTCGACCGC 59.335 50.000 13.01 0.00 32.55 5.68
4092 4432 1.995484 GGTTTTTACTAGTCGACCGCC 59.005 52.381 13.01 0.00 0.00 6.13
4093 4433 1.650645 GTTTTTACTAGTCGACCGCCG 59.349 52.381 13.01 0.52 40.25 6.46
4094 4434 0.171007 TTTTACTAGTCGACCGCCGG 59.829 55.000 13.01 0.00 39.14 6.13
4095 4435 0.960364 TTTACTAGTCGACCGCCGGT 60.960 55.000 9.43 9.43 39.44 5.28
4096 4436 0.960364 TTACTAGTCGACCGCCGGTT 60.960 55.000 11.54 0.00 35.25 4.44
4097 4437 1.369091 TACTAGTCGACCGCCGGTTC 61.369 60.000 11.54 4.50 35.25 3.62
4098 4438 2.672651 TAGTCGACCGCCGGTTCA 60.673 61.111 11.54 0.00 35.25 3.18
4099 4439 2.862347 CTAGTCGACCGCCGGTTCAC 62.862 65.000 11.54 10.48 35.25 3.18
4112 4452 2.699251 GGTTCACCGGTTTGATTGTC 57.301 50.000 2.97 0.00 0.00 3.18
4113 4453 1.069500 GGTTCACCGGTTTGATTGTCG 60.069 52.381 2.97 0.00 0.00 4.35
4114 4454 1.069500 GTTCACCGGTTTGATTGTCGG 60.069 52.381 2.97 0.00 46.95 4.79
4118 4458 2.785713 CCGGTTTGATTGTCGGTTTT 57.214 45.000 0.00 0.00 37.92 2.43
4119 4459 3.086818 CCGGTTTGATTGTCGGTTTTT 57.913 42.857 0.00 0.00 37.92 1.94
4178 4518 7.984391 TGTGCTAATACAGTGTGAAATAATGG 58.016 34.615 5.88 0.00 0.00 3.16
4179 4519 7.609918 TGTGCTAATACAGTGTGAAATAATGGT 59.390 33.333 5.88 0.00 0.00 3.55
4180 4520 8.122952 GTGCTAATACAGTGTGAAATAATGGTC 58.877 37.037 5.88 0.00 0.00 4.02
4181 4521 7.826744 TGCTAATACAGTGTGAAATAATGGTCA 59.173 33.333 5.88 0.00 0.00 4.02
4182 4522 8.673711 GCTAATACAGTGTGAAATAATGGTCAA 58.326 33.333 5.88 0.00 0.00 3.18
4220 4560 7.005062 CATATAGTGGACAACAAAGTAGCAC 57.995 40.000 0.00 0.00 0.00 4.40
4221 4561 3.275617 AGTGGACAACAAAGTAGCACA 57.724 42.857 0.00 0.00 0.00 4.57
4222 4562 3.616219 AGTGGACAACAAAGTAGCACAA 58.384 40.909 0.00 0.00 0.00 3.33
4223 4563 3.377172 AGTGGACAACAAAGTAGCACAAC 59.623 43.478 0.00 0.00 0.00 3.32
4224 4564 2.685897 TGGACAACAAAGTAGCACAACC 59.314 45.455 0.00 0.00 0.00 3.77
4225 4565 2.286772 GGACAACAAAGTAGCACAACCG 60.287 50.000 0.00 0.00 0.00 4.44
4226 4566 2.610374 GACAACAAAGTAGCACAACCGA 59.390 45.455 0.00 0.00 0.00 4.69
4227 4567 2.612212 ACAACAAAGTAGCACAACCGAG 59.388 45.455 0.00 0.00 0.00 4.63
4228 4568 2.612212 CAACAAAGTAGCACAACCGAGT 59.388 45.455 0.00 0.00 0.00 4.18
4229 4569 2.914059 ACAAAGTAGCACAACCGAGTT 58.086 42.857 0.00 0.00 0.00 3.01
4231 4571 1.878953 AAGTAGCACAACCGAGTTGG 58.121 50.000 17.36 0.00 46.50 3.77
4242 4582 0.450184 CCGAGTTGGTTATTTGGCCG 59.550 55.000 0.00 0.00 0.00 6.13
4243 4583 1.161843 CGAGTTGGTTATTTGGCCGT 58.838 50.000 0.00 0.00 0.00 5.68
4244 4584 1.135803 CGAGTTGGTTATTTGGCCGTG 60.136 52.381 0.00 0.00 0.00 4.94
4245 4585 1.201414 GAGTTGGTTATTTGGCCGTGG 59.799 52.381 0.00 0.00 0.00 4.94
4246 4586 0.245266 GTTGGTTATTTGGCCGTGGG 59.755 55.000 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.617308 CTGTTGGGAGCATCTTAGCATG 59.383 50.000 0.00 0.00 36.85 4.06
7 8 2.422519 CCTGTTGGGAGCATCTTAGCAT 60.423 50.000 0.00 0.00 37.23 3.79
8 9 1.065199 CCTGTTGGGAGCATCTTAGCA 60.065 52.381 0.00 0.00 37.23 3.49
9 10 1.065126 ACCTGTTGGGAGCATCTTAGC 60.065 52.381 0.00 0.00 38.76 3.09
10 11 2.420687 GGACCTGTTGGGAGCATCTTAG 60.421 54.545 0.00 0.00 38.76 2.18
11 12 1.559682 GGACCTGTTGGGAGCATCTTA 59.440 52.381 0.00 0.00 38.76 2.10
12 13 0.329596 GGACCTGTTGGGAGCATCTT 59.670 55.000 0.00 0.00 38.76 2.40
13 14 0.548682 AGGACCTGTTGGGAGCATCT 60.549 55.000 0.00 0.00 38.76 2.90
14 15 0.107459 GAGGACCTGTTGGGAGCATC 60.107 60.000 0.00 0.00 38.76 3.91
15 16 1.566298 GGAGGACCTGTTGGGAGCAT 61.566 60.000 0.00 0.00 38.76 3.79
16 17 2.224159 GGAGGACCTGTTGGGAGCA 61.224 63.158 0.00 0.00 38.76 4.26
17 18 2.224159 TGGAGGACCTGTTGGGAGC 61.224 63.158 0.00 0.00 38.76 4.70
18 19 1.127567 TGTGGAGGACCTGTTGGGAG 61.128 60.000 0.00 0.00 38.76 4.30
19 20 0.475632 ATGTGGAGGACCTGTTGGGA 60.476 55.000 0.00 0.00 38.76 4.37
20 21 0.322816 CATGTGGAGGACCTGTTGGG 60.323 60.000 0.00 0.00 41.89 4.12
21 22 0.401738 ACATGTGGAGGACCTGTTGG 59.598 55.000 0.00 0.00 29.83 3.77
22 23 2.154462 GAACATGTGGAGGACCTGTTG 58.846 52.381 0.00 0.00 41.79 3.33
23 24 1.073923 GGAACATGTGGAGGACCTGTT 59.926 52.381 0.00 0.00 43.67 3.16
24 25 0.693049 GGAACATGTGGAGGACCTGT 59.307 55.000 0.00 0.00 35.14 4.00
25 26 0.391661 CGGAACATGTGGAGGACCTG 60.392 60.000 0.00 0.00 37.04 4.00
26 27 0.836400 ACGGAACATGTGGAGGACCT 60.836 55.000 0.00 0.00 37.04 3.85
27 28 0.391263 GACGGAACATGTGGAGGACC 60.391 60.000 0.00 0.00 0.00 4.46
28 29 0.608640 AGACGGAACATGTGGAGGAC 59.391 55.000 0.00 0.00 0.00 3.85
29 30 1.348064 AAGACGGAACATGTGGAGGA 58.652 50.000 0.00 0.00 0.00 3.71
30 31 1.806542 CAAAGACGGAACATGTGGAGG 59.193 52.381 0.00 0.00 0.00 4.30
31 32 2.480419 GTCAAAGACGGAACATGTGGAG 59.520 50.000 0.00 0.00 0.00 3.86
32 33 2.489971 GTCAAAGACGGAACATGTGGA 58.510 47.619 0.00 0.00 0.00 4.02
33 34 2.969443 GTCAAAGACGGAACATGTGG 57.031 50.000 0.00 0.00 0.00 4.17
44 45 3.944422 TTCAAGCAGTTCGTCAAAGAC 57.056 42.857 0.00 0.00 0.00 3.01
45 46 4.024893 GTGATTCAAGCAGTTCGTCAAAGA 60.025 41.667 0.00 0.00 0.00 2.52
46 47 4.214437 GTGATTCAAGCAGTTCGTCAAAG 58.786 43.478 0.00 0.00 0.00 2.77
47 48 3.303066 CGTGATTCAAGCAGTTCGTCAAA 60.303 43.478 0.00 0.00 0.00 2.69
48 49 2.220824 CGTGATTCAAGCAGTTCGTCAA 59.779 45.455 0.00 0.00 0.00 3.18
49 50 1.792367 CGTGATTCAAGCAGTTCGTCA 59.208 47.619 0.00 0.00 0.00 4.35
50 51 1.126846 CCGTGATTCAAGCAGTTCGTC 59.873 52.381 0.00 0.00 0.00 4.20
51 52 1.148310 CCGTGATTCAAGCAGTTCGT 58.852 50.000 0.00 0.00 0.00 3.85
52 53 0.443869 CCCGTGATTCAAGCAGTTCG 59.556 55.000 0.00 0.00 0.00 3.95
53 54 1.734465 CTCCCGTGATTCAAGCAGTTC 59.266 52.381 0.00 0.00 0.00 3.01
54 55 1.347707 TCTCCCGTGATTCAAGCAGTT 59.652 47.619 0.00 0.00 0.00 3.16
55 56 0.976641 TCTCCCGTGATTCAAGCAGT 59.023 50.000 0.00 0.00 0.00 4.40
56 57 1.363744 GTCTCCCGTGATTCAAGCAG 58.636 55.000 0.00 0.00 0.00 4.24
57 58 0.389817 CGTCTCCCGTGATTCAAGCA 60.390 55.000 0.00 0.00 0.00 3.91
58 59 0.108804 TCGTCTCCCGTGATTCAAGC 60.109 55.000 0.00 0.00 37.94 4.01
59 60 1.067846 TGTCGTCTCCCGTGATTCAAG 60.068 52.381 0.00 0.00 37.94 3.02
60 61 0.963225 TGTCGTCTCCCGTGATTCAA 59.037 50.000 0.00 0.00 37.94 2.69
61 62 1.182667 ATGTCGTCTCCCGTGATTCA 58.817 50.000 0.00 0.00 37.94 2.57
62 63 3.431922 TTATGTCGTCTCCCGTGATTC 57.568 47.619 0.00 0.00 37.94 2.52
63 64 3.880047 TTTATGTCGTCTCCCGTGATT 57.120 42.857 0.00 0.00 37.94 2.57
64 65 3.880047 TTTTATGTCGTCTCCCGTGAT 57.120 42.857 0.00 0.00 37.94 3.06
65 66 3.663995 TTTTTATGTCGTCTCCCGTGA 57.336 42.857 0.00 0.00 37.94 4.35
93 94 1.673033 CGATCTTGACAGTGTGGGGAC 60.673 57.143 0.00 0.00 0.00 4.46
94 95 0.608130 CGATCTTGACAGTGTGGGGA 59.392 55.000 0.00 0.00 0.00 4.81
95 96 0.391661 CCGATCTTGACAGTGTGGGG 60.392 60.000 0.00 0.00 0.00 4.96
96 97 0.391661 CCCGATCTTGACAGTGTGGG 60.392 60.000 0.00 0.00 0.00 4.61
97 98 0.608130 TCCCGATCTTGACAGTGTGG 59.392 55.000 0.00 0.00 0.00 4.17
98 99 2.341257 CTTCCCGATCTTGACAGTGTG 58.659 52.381 0.00 0.00 0.00 3.82
99 100 1.276421 CCTTCCCGATCTTGACAGTGT 59.724 52.381 0.00 0.00 0.00 3.55
100 101 1.276421 ACCTTCCCGATCTTGACAGTG 59.724 52.381 0.00 0.00 0.00 3.66
101 102 1.276421 CACCTTCCCGATCTTGACAGT 59.724 52.381 0.00 0.00 0.00 3.55
110 111 0.613777 GACTGGTTCACCTTCCCGAT 59.386 55.000 0.00 0.00 36.82 4.18
127 128 1.602771 GGCTGACTAAGGGGGTGAC 59.397 63.158 0.00 0.00 0.00 3.67
159 160 1.943340 GCGATCTTCCCATGTTCTTCC 59.057 52.381 0.00 0.00 0.00 3.46
179 180 0.917259 GAGAGTCTACATTGTGCGCG 59.083 55.000 0.00 0.00 0.00 6.86
188 189 2.045242 AGCCGCCGAGAGTCTACA 60.045 61.111 0.00 0.00 0.00 2.74
220 221 6.991531 TGAGATATGCACATGTATAGTTTGCA 59.008 34.615 7.28 7.28 46.59 4.08
221 222 7.360691 CCTGAGATATGCACATGTATAGTTTGC 60.361 40.741 0.00 0.00 0.00 3.68
222 223 7.360691 GCCTGAGATATGCACATGTATAGTTTG 60.361 40.741 0.00 0.00 0.00 2.93
223 224 6.652481 GCCTGAGATATGCACATGTATAGTTT 59.348 38.462 0.00 0.00 0.00 2.66
224 225 6.169094 GCCTGAGATATGCACATGTATAGTT 58.831 40.000 0.00 0.00 0.00 2.24
225 226 5.623141 CGCCTGAGATATGCACATGTATAGT 60.623 44.000 0.00 0.00 0.00 2.12
226 227 4.802563 CGCCTGAGATATGCACATGTATAG 59.197 45.833 0.00 0.00 0.00 1.31
227 228 4.381932 CCGCCTGAGATATGCACATGTATA 60.382 45.833 0.00 0.00 0.00 1.47
228 229 3.593096 CGCCTGAGATATGCACATGTAT 58.407 45.455 0.00 0.00 0.00 2.29
229 230 2.289010 CCGCCTGAGATATGCACATGTA 60.289 50.000 0.00 0.00 0.00 2.29
230 231 1.541889 CCGCCTGAGATATGCACATGT 60.542 52.381 0.00 0.00 0.00 3.21
231 232 1.154197 CCGCCTGAGATATGCACATG 58.846 55.000 0.00 0.00 0.00 3.21
232 233 0.035881 CCCGCCTGAGATATGCACAT 59.964 55.000 0.00 0.00 0.00 3.21
233 234 1.447217 CCCGCCTGAGATATGCACA 59.553 57.895 0.00 0.00 0.00 4.57
234 235 1.963338 GCCCGCCTGAGATATGCAC 60.963 63.158 0.00 0.00 0.00 4.57
235 236 2.427320 GCCCGCCTGAGATATGCA 59.573 61.111 0.00 0.00 0.00 3.96
236 237 2.359230 GGCCCGCCTGAGATATGC 60.359 66.667 0.00 0.00 0.00 3.14
237 238 2.047844 CGGCCCGCCTGAGATATG 60.048 66.667 3.84 0.00 0.00 1.78
238 239 3.314331 CCGGCCCGCCTGAGATAT 61.314 66.667 0.00 0.00 0.00 1.63
272 273 4.342665 TGGATTTTTAGCACCGGACTTTTT 59.657 37.500 9.46 0.00 0.00 1.94
273 274 3.892588 TGGATTTTTAGCACCGGACTTTT 59.107 39.130 9.46 0.00 0.00 2.27
274 275 3.492337 TGGATTTTTAGCACCGGACTTT 58.508 40.909 9.46 0.00 0.00 2.66
275 276 3.081804 CTGGATTTTTAGCACCGGACTT 58.918 45.455 9.46 0.00 0.00 3.01
276 277 2.618045 CCTGGATTTTTAGCACCGGACT 60.618 50.000 9.46 7.87 0.00 3.85
277 278 1.743394 CCTGGATTTTTAGCACCGGAC 59.257 52.381 9.46 0.00 0.00 4.79
278 279 1.953311 GCCTGGATTTTTAGCACCGGA 60.953 52.381 9.46 0.00 0.00 5.14
279 280 0.455815 GCCTGGATTTTTAGCACCGG 59.544 55.000 0.00 0.00 0.00 5.28
280 281 0.455815 GGCCTGGATTTTTAGCACCG 59.544 55.000 0.00 0.00 0.00 4.94
281 282 1.478105 CAGGCCTGGATTTTTAGCACC 59.522 52.381 26.14 0.00 0.00 5.01
282 283 2.424956 CTCAGGCCTGGATTTTTAGCAC 59.575 50.000 32.23 0.00 0.00 4.40
283 284 2.726821 CTCAGGCCTGGATTTTTAGCA 58.273 47.619 32.23 8.11 0.00 3.49
284 285 1.406898 GCTCAGGCCTGGATTTTTAGC 59.593 52.381 32.23 25.78 0.00 3.09
318 319 1.261619 CGATTTTGTAGGCTCGATGGC 59.738 52.381 0.00 0.00 42.15 4.40
319 320 1.867233 CCGATTTTGTAGGCTCGATGG 59.133 52.381 0.00 0.00 33.07 3.51
320 321 1.867233 CCCGATTTTGTAGGCTCGATG 59.133 52.381 0.00 0.00 33.07 3.84
321 322 1.810412 GCCCGATTTTGTAGGCTCGAT 60.810 52.381 0.00 0.00 42.34 3.59
322 323 0.461339 GCCCGATTTTGTAGGCTCGA 60.461 55.000 0.00 0.00 42.34 4.04
323 324 1.436983 GGCCCGATTTTGTAGGCTCG 61.437 60.000 0.00 0.00 45.07 5.03
324 325 1.101635 GGGCCCGATTTTGTAGGCTC 61.102 60.000 5.69 0.00 45.07 4.70
325 326 1.076995 GGGCCCGATTTTGTAGGCT 60.077 57.895 5.69 0.00 45.07 4.58
326 327 0.968393 TTGGGCCCGATTTTGTAGGC 60.968 55.000 19.37 0.00 44.99 3.93
327 328 1.102978 CTTGGGCCCGATTTTGTAGG 58.897 55.000 19.37 0.00 0.00 3.18
328 329 0.455815 GCTTGGGCCCGATTTTGTAG 59.544 55.000 19.37 2.07 0.00 2.74
329 330 2.573920 GCTTGGGCCCGATTTTGTA 58.426 52.632 19.37 0.00 0.00 2.41
330 331 3.376546 GCTTGGGCCCGATTTTGT 58.623 55.556 19.37 0.00 0.00 2.83
340 341 1.536073 GGACTTTCTTGGGCTTGGGC 61.536 60.000 0.00 0.00 37.82 5.36
341 342 1.244019 CGGACTTTCTTGGGCTTGGG 61.244 60.000 0.00 0.00 0.00 4.12
342 343 0.250727 TCGGACTTTCTTGGGCTTGG 60.251 55.000 0.00 0.00 0.00 3.61
343 344 0.875059 GTCGGACTTTCTTGGGCTTG 59.125 55.000 0.00 0.00 0.00 4.01
344 345 0.602905 CGTCGGACTTTCTTGGGCTT 60.603 55.000 6.57 0.00 0.00 4.35
345 346 1.004918 CGTCGGACTTTCTTGGGCT 60.005 57.895 6.57 0.00 0.00 5.19
346 347 2.677979 GCGTCGGACTTTCTTGGGC 61.678 63.158 6.57 0.00 0.00 5.36
347 348 2.380410 CGCGTCGGACTTTCTTGGG 61.380 63.158 6.57 0.00 0.00 4.12
348 349 3.156334 CGCGTCGGACTTTCTTGG 58.844 61.111 6.57 0.00 0.00 3.61
359 360 4.514569 CAAAATCGGGCCGCGTCG 62.515 66.667 23.83 6.37 0.00 5.12
360 361 3.428282 ACAAAATCGGGCCGCGTC 61.428 61.111 23.83 0.00 0.00 5.19
361 362 3.732892 CACAAAATCGGGCCGCGT 61.733 61.111 23.83 9.76 0.00 6.01
364 365 4.474846 CCGCACAAAATCGGGCCG 62.475 66.667 22.51 22.51 41.82 6.13
368 369 4.128388 GGGCCCGCACAAAATCGG 62.128 66.667 5.69 0.00 44.89 4.18
369 370 2.817470 CTTGGGCCCGCACAAAATCG 62.817 60.000 19.37 0.00 39.02 3.34
370 371 1.079888 CTTGGGCCCGCACAAAATC 60.080 57.895 19.37 0.00 39.02 2.17
371 372 3.059099 CTTGGGCCCGCACAAAAT 58.941 55.556 19.37 0.00 39.02 1.82
372 373 3.922640 GCTTGGGCCCGCACAAAA 61.923 61.111 19.37 3.13 39.02 2.44
404 405 3.649277 CTGGAACTGAGCCCGACGG 62.649 68.421 6.99 6.99 0.00 4.79
405 406 2.125912 CTGGAACTGAGCCCGACG 60.126 66.667 0.00 0.00 0.00 5.12
406 407 2.266055 CCTGGAACTGAGCCCGAC 59.734 66.667 0.00 0.00 0.00 4.79
407 408 3.706373 GCCTGGAACTGAGCCCGA 61.706 66.667 0.00 0.00 0.00 5.14
408 409 4.785453 GGCCTGGAACTGAGCCCG 62.785 72.222 0.00 0.00 37.54 6.13
410 411 4.785453 CGGGCCTGGAACTGAGCC 62.785 72.222 2.57 0.00 40.70 4.70
411 412 3.672295 CTCGGGCCTGGAACTGAGC 62.672 68.421 12.87 0.00 33.75 4.26
412 413 2.581354 CTCGGGCCTGGAACTGAG 59.419 66.667 12.87 11.62 34.14 3.35
413 414 3.706373 GCTCGGGCCTGGAACTGA 61.706 66.667 12.87 0.00 0.00 3.41
437 438 4.457496 AGCCCGAGTGTGCCATCG 62.457 66.667 0.00 0.00 38.65 3.84
438 439 2.512515 GAGCCCGAGTGTGCCATC 60.513 66.667 0.00 0.00 0.00 3.51
439 440 4.457496 CGAGCCCGAGTGTGCCAT 62.457 66.667 0.00 0.00 38.22 4.40
457 458 4.237809 GAAAATCTCGGGCCGCGC 62.238 66.667 23.83 0.00 0.00 6.86
458 459 2.813179 CTGAAAATCTCGGGCCGCG 61.813 63.158 23.83 17.06 0.00 6.46
459 460 2.472909 CCTGAAAATCTCGGGCCGC 61.473 63.158 23.83 5.69 43.90 6.53
460 461 3.813596 CCTGAAAATCTCGGGCCG 58.186 61.111 22.51 22.51 43.90 6.13
464 465 1.819632 CCCGGCCTGAAAATCTCGG 60.820 63.158 0.00 0.00 37.50 4.63
465 466 0.676782 AACCCGGCCTGAAAATCTCG 60.677 55.000 0.00 0.00 0.00 4.04
466 467 0.811281 CAACCCGGCCTGAAAATCTC 59.189 55.000 0.00 0.00 0.00 2.75
467 468 0.611896 CCAACCCGGCCTGAAAATCT 60.612 55.000 0.00 0.00 0.00 2.40
468 469 1.604147 CCCAACCCGGCCTGAAAATC 61.604 60.000 0.00 0.00 0.00 2.17
469 470 1.609210 CCCAACCCGGCCTGAAAAT 60.609 57.895 0.00 0.00 0.00 1.82
470 471 2.203567 CCCAACCCGGCCTGAAAA 60.204 61.111 0.00 0.00 0.00 2.29
471 472 3.076217 AACCCAACCCGGCCTGAAA 62.076 57.895 0.00 0.00 0.00 2.69
472 473 3.503839 AACCCAACCCGGCCTGAA 61.504 61.111 0.00 0.00 0.00 3.02
473 474 4.278513 CAACCCAACCCGGCCTGA 62.279 66.667 0.00 0.00 0.00 3.86
507 508 1.517361 GGTTTGCATTAGGCCTGGC 59.483 57.895 17.99 17.00 43.89 4.85
508 509 0.324645 AGGGTTTGCATTAGGCCTGG 60.325 55.000 17.99 5.97 43.89 4.45
509 510 2.301346 CTAGGGTTTGCATTAGGCCTG 58.699 52.381 17.99 0.00 43.89 4.85
510 511 1.215423 CCTAGGGTTTGCATTAGGCCT 59.785 52.381 11.78 11.78 43.89 5.19
511 512 1.063942 ACCTAGGGTTTGCATTAGGCC 60.064 52.381 14.81 0.00 34.77 5.19
512 513 2.437085 ACCTAGGGTTTGCATTAGGC 57.563 50.000 14.81 0.00 36.89 3.93
542 543 6.983890 TCCAATTTCTTGCCTTGTTTTTAGTC 59.016 34.615 0.00 0.00 0.00 2.59
592 737 4.955811 AATTGATGGGAGTGCTATCGTA 57.044 40.909 3.61 0.00 0.00 3.43
599 744 2.686915 CCTCAGAAATTGATGGGAGTGC 59.313 50.000 0.00 0.00 34.68 4.40
654 799 2.746279 TCCCCTTTTCTTGTTCTGCA 57.254 45.000 0.00 0.00 0.00 4.41
683 829 3.564644 CAGAATGAGGATGGTTGATCTGC 59.435 47.826 0.00 0.00 39.69 4.26
878 1037 1.067821 GAGGAGGAATGGAGCAGTACG 59.932 57.143 0.00 0.00 0.00 3.67
880 1039 1.292242 AGGAGGAGGAATGGAGCAGTA 59.708 52.381 0.00 0.00 0.00 2.74
894 1053 1.093408 TTGAAGGAGGAGGAGGAGGA 58.907 55.000 0.00 0.00 0.00 3.71
899 1058 0.179062 CGGCATTGAAGGAGGAGGAG 60.179 60.000 0.00 0.00 0.00 3.69
922 1081 0.322546 AGATGGGAGGTTTGAACGGC 60.323 55.000 0.00 0.00 0.00 5.68
923 1082 3.343941 TTAGATGGGAGGTTTGAACGG 57.656 47.619 0.00 0.00 0.00 4.44
924 1083 6.037172 CAGTTATTAGATGGGAGGTTTGAACG 59.963 42.308 0.00 0.00 0.00 3.95
970 1129 2.095668 ACGAGCACTTGAAGTCTACTCG 60.096 50.000 26.81 26.81 43.28 4.18
977 1136 0.249911 GGTGGACGAGCACTTGAAGT 60.250 55.000 0.00 0.00 0.00 3.01
991 1150 2.756400 GAGTGGCATGGTGGTGGA 59.244 61.111 0.00 0.00 0.00 4.02
994 1153 2.129555 GAGTGGAGTGGCATGGTGGT 62.130 60.000 0.00 0.00 0.00 4.16
995 1154 1.377725 GAGTGGAGTGGCATGGTGG 60.378 63.158 0.00 0.00 0.00 4.61
996 1155 1.377725 GGAGTGGAGTGGCATGGTG 60.378 63.158 0.00 0.00 0.00 4.17
997 1156 2.606587 GGGAGTGGAGTGGCATGGT 61.607 63.158 0.00 0.00 0.00 3.55
1044 1203 3.736720 GGGAAACGTAGTGGAAAGAACT 58.263 45.455 0.00 0.00 45.00 3.01
1047 1206 1.962807 TCGGGAAACGTAGTGGAAAGA 59.037 47.619 0.00 0.00 45.00 2.52
1056 1215 0.540365 AGACAGGGTCGGGAAACGTA 60.540 55.000 0.00 0.00 44.69 3.57
1058 1217 1.080025 GAGACAGGGTCGGGAAACG 60.080 63.158 0.00 0.00 46.11 3.60
1060 1219 0.903454 GAGGAGACAGGGTCGGGAAA 60.903 60.000 0.00 0.00 37.67 3.13
1069 1228 0.739112 GCGCAAGAAGAGGAGACAGG 60.739 60.000 0.30 0.00 43.02 4.00
1341 1500 2.847234 AGCTGGTTCCCCGACACA 60.847 61.111 0.00 0.00 0.00 3.72
1704 1863 5.310857 AGGGGAGTCTTTTGAGAACACTAAT 59.689 40.000 0.00 0.00 0.00 1.73
1800 1968 0.306533 TTTTCGTTGCCGTGCTCTTC 59.693 50.000 0.00 0.00 35.01 2.87
1878 2046 2.262915 CAGAGCAGGACGACCACC 59.737 66.667 6.71 0.00 38.94 4.61
1882 2050 1.739562 CCAAGCAGAGCAGGACGAC 60.740 63.158 0.00 0.00 0.00 4.34
2022 2190 1.103398 CCGATGCCCCCTTTGATGTC 61.103 60.000 0.00 0.00 0.00 3.06
2023 2191 1.076777 CCGATGCCCCCTTTGATGT 60.077 57.895 0.00 0.00 0.00 3.06
2345 2513 9.631452 CCAGAAAAGAAAGAATCCAAAGTAATC 57.369 33.333 0.00 0.00 0.00 1.75
2370 2543 1.439679 CGAACCTAACTGCTCCAACC 58.560 55.000 0.00 0.00 0.00 3.77
2428 2601 7.442062 CCAATTTCAAAAGCCAAGACTTTATGT 59.558 33.333 0.00 0.00 38.92 2.29
2453 2626 2.102252 TGCAATAAATGGCCGGAATTCC 59.898 45.455 15.01 15.01 0.00 3.01
2579 2758 4.554036 GCCGCCTCCCAGATGTCC 62.554 72.222 0.00 0.00 0.00 4.02
2738 2917 2.752238 AGGTCGTCGCTGAGGAGG 60.752 66.667 2.07 0.00 0.00 4.30
3303 3494 3.191162 TCTGAAATCAAATGTTCCCTGCG 59.809 43.478 0.00 0.00 0.00 5.18
3404 3652 0.796312 CCGTTGGTTCTTGTCGATGG 59.204 55.000 0.00 0.00 0.00 3.51
3425 3722 5.125900 TGTTGGAACTTGGATCATAATGCTG 59.874 40.000 0.00 0.00 0.00 4.41
3433 3730 5.887598 CCTAATCATGTTGGAACTTGGATCA 59.112 40.000 0.00 0.00 35.48 2.92
3434 3731 6.122277 TCCTAATCATGTTGGAACTTGGATC 58.878 40.000 5.78 0.00 35.48 3.36
3462 3763 1.997606 GTGCCATGCATCTTTTCTTGC 59.002 47.619 0.00 0.00 41.91 4.01
3524 3828 0.106469 TCCTCTCCACCTCGATCTGG 60.106 60.000 2.63 2.63 0.00 3.86
3525 3829 1.028905 GTCCTCTCCACCTCGATCTG 58.971 60.000 0.00 0.00 0.00 2.90
3551 3861 1.331756 CCATACTCGCAAAGCATGTCC 59.668 52.381 0.00 0.00 27.98 4.02
3616 3930 2.344592 TCTCCACTAACCCATGTTGGT 58.655 47.619 0.00 0.00 45.84 3.67
3617 3931 3.054434 TCATCTCCACTAACCCATGTTGG 60.054 47.826 0.00 0.00 38.77 3.77
3637 3951 5.446143 ACATTTTAACAACCTCGCATTCA 57.554 34.783 0.00 0.00 0.00 2.57
3701 4015 2.264794 CGAGGCGGCTAACCAACT 59.735 61.111 13.24 0.00 34.57 3.16
3742 4056 2.296190 GTGGCCTCACAAACCTAAAAGG 59.704 50.000 3.32 0.00 43.13 3.11
3842 4171 3.112709 GACCTGAACTGTCGCGGC 61.113 66.667 2.29 2.29 0.00 6.53
3894 4234 3.156714 CCACTGTGGCTGGTACCA 58.843 61.111 15.39 15.39 37.38 3.25
3942 4282 2.041350 TCCAACTTAGTCGGTCCTCTCT 59.959 50.000 0.00 0.00 0.00 3.10
3972 4312 7.303998 ACTACGTACTACACAGTTTCATCTTC 58.696 38.462 0.00 0.00 36.14 2.87
4009 4349 6.721571 TTTTAAACTATGCCGAGAAGTCAG 57.278 37.500 0.00 0.00 0.00 3.51
4036 4376 1.705727 CGGTTCGATTTCCGGTTCG 59.294 57.895 14.97 14.97 42.61 3.95
4041 4381 0.725117 CCTTTCCGGTTCGATTTCCG 59.275 55.000 14.41 14.41 45.42 4.30
4042 4382 1.817357 ACCTTTCCGGTTCGATTTCC 58.183 50.000 0.00 0.00 46.37 3.13
4052 4392 2.277084 CTGAACCGATAACCTTTCCGG 58.723 52.381 0.00 0.00 46.65 5.14
4053 4393 2.277084 CCTGAACCGATAACCTTTCCG 58.723 52.381 0.00 0.00 0.00 4.30
4054 4394 3.345508 ACCTGAACCGATAACCTTTCC 57.654 47.619 0.00 0.00 0.00 3.13
4055 4395 5.700722 AAAACCTGAACCGATAACCTTTC 57.299 39.130 0.00 0.00 0.00 2.62
4056 4396 6.774170 AGTAAAAACCTGAACCGATAACCTTT 59.226 34.615 0.00 0.00 0.00 3.11
4057 4397 6.301486 AGTAAAAACCTGAACCGATAACCTT 58.699 36.000 0.00 0.00 0.00 3.50
4058 4398 5.872963 AGTAAAAACCTGAACCGATAACCT 58.127 37.500 0.00 0.00 0.00 3.50
4059 4399 6.875726 ACTAGTAAAAACCTGAACCGATAACC 59.124 38.462 0.00 0.00 0.00 2.85
4060 4400 7.201384 CGACTAGTAAAAACCTGAACCGATAAC 60.201 40.741 0.00 0.00 0.00 1.89
4061 4401 6.808212 CGACTAGTAAAAACCTGAACCGATAA 59.192 38.462 0.00 0.00 0.00 1.75
4062 4402 6.150976 TCGACTAGTAAAAACCTGAACCGATA 59.849 38.462 0.00 0.00 0.00 2.92
4063 4403 5.047802 TCGACTAGTAAAAACCTGAACCGAT 60.048 40.000 0.00 0.00 0.00 4.18
4064 4404 4.278170 TCGACTAGTAAAAACCTGAACCGA 59.722 41.667 0.00 0.00 0.00 4.69
4065 4405 4.383948 GTCGACTAGTAAAAACCTGAACCG 59.616 45.833 8.70 0.00 0.00 4.44
4066 4406 4.687948 GGTCGACTAGTAAAAACCTGAACC 59.312 45.833 16.46 0.00 0.00 3.62
4067 4407 4.383948 CGGTCGACTAGTAAAAACCTGAAC 59.616 45.833 16.46 0.00 0.00 3.18
4068 4408 4.549458 CGGTCGACTAGTAAAAACCTGAA 58.451 43.478 16.46 0.00 0.00 3.02
4069 4409 3.612479 GCGGTCGACTAGTAAAAACCTGA 60.612 47.826 16.46 0.00 0.00 3.86
4070 4410 2.665052 GCGGTCGACTAGTAAAAACCTG 59.335 50.000 16.46 0.27 0.00 4.00
4071 4411 2.353109 GGCGGTCGACTAGTAAAAACCT 60.353 50.000 16.46 0.00 0.00 3.50
4072 4412 1.995484 GGCGGTCGACTAGTAAAAACC 59.005 52.381 16.46 0.35 0.00 3.27
4073 4413 1.650645 CGGCGGTCGACTAGTAAAAAC 59.349 52.381 16.46 0.00 42.43 2.43
4074 4414 1.402720 CCGGCGGTCGACTAGTAAAAA 60.403 52.381 19.97 0.00 42.43 1.94
4075 4415 0.171007 CCGGCGGTCGACTAGTAAAA 59.829 55.000 19.97 0.00 42.43 1.52
4076 4416 0.960364 ACCGGCGGTCGACTAGTAAA 60.960 55.000 28.83 0.00 42.43 2.01
4077 4417 0.960364 AACCGGCGGTCGACTAGTAA 60.960 55.000 34.23 0.00 42.43 2.24
4078 4418 1.369091 GAACCGGCGGTCGACTAGTA 61.369 60.000 34.23 0.00 42.43 1.82
4079 4419 2.674380 AACCGGCGGTCGACTAGT 60.674 61.111 34.23 12.35 42.43 2.57
4080 4420 2.101770 GAACCGGCGGTCGACTAG 59.898 66.667 34.23 11.14 42.43 2.57
4081 4421 2.672651 TGAACCGGCGGTCGACTA 60.673 61.111 34.23 13.99 42.43 2.59
4082 4422 4.353437 GTGAACCGGCGGTCGACT 62.353 66.667 34.23 17.62 42.43 4.18
4093 4433 1.069500 CGACAATCAAACCGGTGAACC 60.069 52.381 8.52 0.00 0.00 3.62
4094 4434 1.069500 CCGACAATCAAACCGGTGAAC 60.069 52.381 8.52 0.00 37.40 3.18
4095 4435 1.231221 CCGACAATCAAACCGGTGAA 58.769 50.000 8.52 0.00 37.40 3.18
4096 4436 2.921374 CCGACAATCAAACCGGTGA 58.079 52.632 8.52 1.36 37.40 4.02
4099 4439 2.785713 AAAACCGACAATCAAACCGG 57.214 45.000 0.00 0.00 46.65 5.28
4152 4492 8.623903 CCATTATTTCACACTGTATTAGCACAT 58.376 33.333 0.00 0.00 0.00 3.21
4153 4493 7.609918 ACCATTATTTCACACTGTATTAGCACA 59.390 33.333 0.00 0.00 0.00 4.57
4154 4494 7.985476 ACCATTATTTCACACTGTATTAGCAC 58.015 34.615 0.00 0.00 0.00 4.40
4155 4495 7.826744 TGACCATTATTTCACACTGTATTAGCA 59.173 33.333 0.00 0.00 0.00 3.49
4156 4496 8.208718 TGACCATTATTTCACACTGTATTAGC 57.791 34.615 0.00 0.00 0.00 3.09
4196 4536 6.593770 TGTGCTACTTTGTTGTCCACTATATG 59.406 38.462 0.00 0.00 0.00 1.78
4197 4537 6.707290 TGTGCTACTTTGTTGTCCACTATAT 58.293 36.000 0.00 0.00 0.00 0.86
4198 4538 6.104146 TGTGCTACTTTGTTGTCCACTATA 57.896 37.500 0.00 0.00 0.00 1.31
4199 4539 4.968259 TGTGCTACTTTGTTGTCCACTAT 58.032 39.130 0.00 0.00 0.00 2.12
4200 4540 4.409718 TGTGCTACTTTGTTGTCCACTA 57.590 40.909 0.00 0.00 0.00 2.74
4201 4541 3.275617 TGTGCTACTTTGTTGTCCACT 57.724 42.857 0.00 0.00 0.00 4.00
4202 4542 3.488553 GGTTGTGCTACTTTGTTGTCCAC 60.489 47.826 0.00 0.00 0.00 4.02
4203 4543 2.685897 GGTTGTGCTACTTTGTTGTCCA 59.314 45.455 0.00 0.00 0.00 4.02
4204 4544 2.286772 CGGTTGTGCTACTTTGTTGTCC 60.287 50.000 0.00 0.00 0.00 4.02
4205 4545 2.610374 TCGGTTGTGCTACTTTGTTGTC 59.390 45.455 0.00 0.00 0.00 3.18
4206 4546 2.612212 CTCGGTTGTGCTACTTTGTTGT 59.388 45.455 0.00 0.00 0.00 3.32
4207 4547 2.612212 ACTCGGTTGTGCTACTTTGTTG 59.388 45.455 0.00 0.00 0.00 3.33
4208 4548 2.914059 ACTCGGTTGTGCTACTTTGTT 58.086 42.857 0.00 0.00 0.00 2.83
4209 4549 2.612212 CAACTCGGTTGTGCTACTTTGT 59.388 45.455 8.17 0.00 38.56 2.83
4210 4550 2.032030 CCAACTCGGTTGTGCTACTTTG 60.032 50.000 13.41 0.00 41.41 2.77
4211 4551 2.218603 CCAACTCGGTTGTGCTACTTT 58.781 47.619 13.41 0.00 41.41 2.66
4212 4552 1.878953 CCAACTCGGTTGTGCTACTT 58.121 50.000 13.41 0.00 41.41 2.24
4213 4553 3.606886 CCAACTCGGTTGTGCTACT 57.393 52.632 13.41 0.00 41.41 2.57
4223 4563 0.450184 CGGCCAAATAACCAACTCGG 59.550 55.000 2.24 0.00 42.50 4.63
4224 4564 1.135803 CACGGCCAAATAACCAACTCG 60.136 52.381 2.24 0.00 0.00 4.18
4225 4565 1.201414 CCACGGCCAAATAACCAACTC 59.799 52.381 2.24 0.00 0.00 3.01
4226 4566 1.253100 CCACGGCCAAATAACCAACT 58.747 50.000 2.24 0.00 0.00 3.16
4227 4567 0.245266 CCCACGGCCAAATAACCAAC 59.755 55.000 2.24 0.00 0.00 3.77
4228 4568 1.536943 GCCCACGGCCAAATAACCAA 61.537 55.000 2.24 0.00 44.06 3.67
4229 4569 1.979693 GCCCACGGCCAAATAACCA 60.980 57.895 2.24 0.00 44.06 3.67
4230 4570 2.889617 GCCCACGGCCAAATAACC 59.110 61.111 2.24 0.00 44.06 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.