Multiple sequence alignment - TraesCS7D01G369300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G369300 chr7D 100.000 5922 0 0 1 5922 478217221 478223142 0.000000e+00 10936.0
1 TraesCS7D01G369300 chr7B 95.968 1637 50 12 2353 3978 503374939 503376570 0.000000e+00 2643.0
2 TraesCS7D01G369300 chr7B 92.201 1654 86 19 724 2365 503373295 503374917 0.000000e+00 2300.0
3 TraesCS7D01G369300 chr7B 93.758 785 24 6 4342 5124 503376845 503377606 0.000000e+00 1155.0
4 TraesCS7D01G369300 chr7B 85.055 455 38 14 5453 5879 503409588 503410040 2.530000e-118 436.0
5 TraesCS7D01G369300 chr7B 84.802 454 40 14 5453 5879 503378634 503379085 4.240000e-116 429.0
6 TraesCS7D01G369300 chr7B 80.709 254 40 3 4754 5007 723392880 723392636 7.830000e-44 189.0
7 TraesCS7D01G369300 chr7A 88.683 1131 69 20 727 1828 517521372 517520272 0.000000e+00 1325.0
8 TraesCS7D01G369300 chr7A 88.673 927 59 20 2578 3468 517519619 517518703 0.000000e+00 1088.0
9 TraesCS7D01G369300 chr7A 91.950 559 39 6 3424 3978 517518666 517518110 0.000000e+00 778.0
10 TraesCS7D01G369300 chr7A 91.772 474 26 7 4636 5105 517517558 517517094 0.000000e+00 647.0
11 TraesCS7D01G369300 chr7A 93.782 386 23 1 1815 2199 517520239 517519854 3.980000e-161 579.0
12 TraesCS7D01G369300 chr7A 84.441 572 52 20 4030 4595 517518105 517517565 4.060000e-146 529.0
13 TraesCS7D01G369300 chr7A 82.669 502 46 24 5384 5845 517516653 517516153 1.990000e-109 407.0
14 TraesCS7D01G369300 chr7A 88.811 286 24 5 5123 5400 517516953 517516668 1.580000e-90 344.0
15 TraesCS7D01G369300 chr7A 95.082 183 9 0 2315 2497 517519826 517519644 7.510000e-74 289.0
16 TraesCS7D01G369300 chr7A 85.235 149 19 2 3501 3646 679361322 679361470 3.700000e-32 150.0
17 TraesCS7D01G369300 chr7A 85.235 149 19 2 3501 3646 679375969 679376117 3.700000e-32 150.0
18 TraesCS7D01G369300 chr7A 84.564 149 20 2 3501 3646 679387437 679387585 1.720000e-30 145.0
19 TraesCS7D01G369300 chr7A 83.654 104 15 2 604 705 470126073 470126176 4.890000e-16 97.1
20 TraesCS7D01G369300 chr1D 96.026 604 22 2 1 603 366690991 366690389 0.000000e+00 981.0
21 TraesCS7D01G369300 chr1B 88.595 605 63 6 1 603 493733782 493734382 0.000000e+00 730.0
22 TraesCS7D01G369300 chr5D 85.857 601 78 5 6 603 351952933 351952337 3.010000e-177 632.0
23 TraesCS7D01G369300 chr5D 100.000 28 0 0 5894 5921 192760181 192760208 1.100000e-02 52.8
24 TraesCS7D01G369300 chr5D 100.000 28 0 0 5894 5921 251661256 251661229 1.100000e-02 52.8
25 TraesCS7D01G369300 chr3A 81.848 606 104 6 1 604 693906164 693905563 6.850000e-139 505.0
26 TraesCS7D01G369300 chr3A 85.714 105 10 4 603 705 477420837 477420938 8.120000e-19 106.0
27 TraesCS7D01G369300 chr3A 86.250 80 7 4 629 706 329625733 329625810 3.800000e-12 84.2
28 TraesCS7D01G369300 chr2B 81.923 520 85 8 87 603 689327575 689327062 1.180000e-116 431.0
29 TraesCS7D01G369300 chr2B 78.361 476 96 6 132 604 399950539 399951010 9.650000e-78 302.0
30 TraesCS7D01G369300 chr2B 84.173 139 20 2 1048 1186 118305255 118305391 3.720000e-27 134.0
31 TraesCS7D01G369300 chr2A 80.591 474 88 3 132 603 67964089 67964560 4.360000e-96 363.0
32 TraesCS7D01G369300 chr2A 78.656 506 102 5 99 602 36850250 36850751 1.230000e-86 331.0
33 TraesCS7D01G369300 chr6B 79.290 507 100 4 99 603 665883148 665883651 3.400000e-92 350.0
34 TraesCS7D01G369300 chr6B 88.806 134 15 0 1054 1187 15933670 15933537 1.320000e-36 165.0
35 TraesCS7D01G369300 chr6B 83.824 136 17 5 1048 1181 674317238 674317370 2.240000e-24 124.0
36 TraesCS7D01G369300 chr6D 85.088 228 34 0 1945 2172 8791623 8791396 3.570000e-57 233.0
37 TraesCS7D01G369300 chr6D 88.636 132 11 3 1060 1187 8792376 8792245 2.210000e-34 158.0
38 TraesCS7D01G369300 chr6D 100.000 28 0 0 5894 5921 51743237 51743210 1.100000e-02 52.8
39 TraesCS7D01G369300 chr6D 100.000 28 0 0 5894 5921 258100299 258100272 1.100000e-02 52.8
40 TraesCS7D01G369300 chr3B 82.895 228 29 3 4754 4979 737458170 737458389 4.680000e-46 196.0
41 TraesCS7D01G369300 chr3B 82.895 228 29 3 4754 4979 737493421 737493640 4.680000e-46 196.0
42 TraesCS7D01G369300 chr3B 91.209 91 6 2 4889 4979 738123493 738123405 8.060000e-24 122.0
43 TraesCS7D01G369300 chr6A 86.624 157 18 3 1046 1199 9049307 9049463 2.840000e-38 171.0
44 TraesCS7D01G369300 chr6A 86.364 88 8 4 621 705 573135506 573135592 6.320000e-15 93.5
45 TraesCS7D01G369300 chr2D 86.232 138 17 2 1048 1184 91713117 91713253 1.330000e-31 148.0
46 TraesCS7D01G369300 chr2D 91.549 71 6 0 634 704 161991731 161991801 1.360000e-16 99.0
47 TraesCS7D01G369300 chr2D 81.915 94 11 6 619 708 416389951 416390042 2.290000e-09 75.0
48 TraesCS7D01G369300 chrUn 84.564 149 20 2 3501 3646 356064985 356064837 1.720000e-30 145.0
49 TraesCS7D01G369300 chrUn 84.564 149 20 2 3501 3646 419940931 419940783 1.720000e-30 145.0
50 TraesCS7D01G369300 chrUn 100.000 28 0 0 5894 5921 64583802 64583829 1.100000e-02 52.8
51 TraesCS7D01G369300 chr4D 85.556 90 9 4 618 704 467606235 467606147 2.270000e-14 91.6
52 TraesCS7D01G369300 chr4D 94.340 53 2 1 653 704 459422078 459422130 4.920000e-11 80.5
53 TraesCS7D01G369300 chr4D 77.778 108 21 3 599 704 506716701 506716807 4.950000e-06 63.9
54 TraesCS7D01G369300 chr4D 100.000 28 0 0 5894 5921 308310533 308310560 1.100000e-02 52.8
55 TraesCS7D01G369300 chr4D 100.000 28 0 0 5894 5921 370201774 370201801 1.100000e-02 52.8
56 TraesCS7D01G369300 chr4D 100.000 28 0 0 5894 5921 397930388 397930361 1.100000e-02 52.8
57 TraesCS7D01G369300 chr1A 100.000 28 0 0 5894 5921 398941785 398941758 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G369300 chr7D 478217221 478223142 5921 False 10936.000000 10936 100.000000 1 5922 1 chr7D.!!$F1 5921
1 TraesCS7D01G369300 chr7B 503373295 503379085 5790 False 1631.750000 2643 91.682250 724 5879 4 chr7B.!!$F2 5155
2 TraesCS7D01G369300 chr7A 517516153 517521372 5219 True 665.111111 1325 89.540333 727 5845 9 chr7A.!!$R1 5118
3 TraesCS7D01G369300 chr1D 366690389 366690991 602 True 981.000000 981 96.026000 1 603 1 chr1D.!!$R1 602
4 TraesCS7D01G369300 chr1B 493733782 493734382 600 False 730.000000 730 88.595000 1 603 1 chr1B.!!$F1 602
5 TraesCS7D01G369300 chr5D 351952337 351952933 596 True 632.000000 632 85.857000 6 603 1 chr5D.!!$R2 597
6 TraesCS7D01G369300 chr3A 693905563 693906164 601 True 505.000000 505 81.848000 1 604 1 chr3A.!!$R1 603
7 TraesCS7D01G369300 chr2B 689327062 689327575 513 True 431.000000 431 81.923000 87 603 1 chr2B.!!$R1 516
8 TraesCS7D01G369300 chr2A 36850250 36850751 501 False 331.000000 331 78.656000 99 602 1 chr2A.!!$F1 503
9 TraesCS7D01G369300 chr6B 665883148 665883651 503 False 350.000000 350 79.290000 99 603 1 chr6B.!!$F1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
534 538 0.184211 ACGTGTGGCTAGGGGTTTTT 59.816 50.0 0.00 0.00 0.00 1.94 F
1198 1212 0.038526 CGTACGTGTTGCTCCCTCTT 60.039 55.0 7.22 0.00 0.00 2.85 F
1469 1499 1.032014 TGCAGTTTTCTTGGTCCTGC 58.968 50.0 0.00 0.00 46.64 4.85 F
2564 2711 2.457366 AACACGACTCATCCTTCCAC 57.543 50.0 0.00 0.00 0.00 4.02 F
3986 4256 0.321298 ATGTAACAGGTGTGGACGCC 60.321 55.0 0.77 0.77 46.57 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2293 0.392863 TCGGCACCCATGAATGTGAG 60.393 55.000 12.36 6.78 34.37 3.51 R
3128 3283 0.035458 AGGTAGCCAGTGCAACAGAC 59.965 55.000 0.00 0.00 41.43 3.51 R
3132 3287 2.230660 AGAAAAGGTAGCCAGTGCAAC 58.769 47.619 0.00 0.00 41.13 4.17 R
4000 4270 0.255604 TGATGGGCATGTGGGTAGTG 59.744 55.000 0.00 0.00 0.00 2.74 R
5048 5331 1.271379 GCACACCCATAGGTCACAACT 60.271 52.381 0.00 0.00 46.45 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.000717 CCGTCCGTTTGCCAAAGAAAT 60.001 47.619 0.00 0.00 0.00 2.17
194 195 3.000080 GCGGTCGTTTGCAGAGACG 62.000 63.158 11.60 11.60 40.43 4.18
352 353 2.172293 AGATTGCCAGGAAGTGATCTCC 59.828 50.000 0.00 0.00 0.00 3.71
409 412 4.754114 CCGATTCTCAGGGAGATTCATTTC 59.246 45.833 14.75 0.74 38.56 2.17
494 497 2.826725 ACTCGCTAGCTAAAGGAGTTGT 59.173 45.455 13.93 0.00 34.49 3.32
504 507 3.281727 AAAGGAGTTGTGTCTCTTGCA 57.718 42.857 0.00 0.00 35.11 4.08
534 538 0.184211 ACGTGTGGCTAGGGGTTTTT 59.816 50.000 0.00 0.00 0.00 1.94
622 626 7.923414 AAAAATATGAGAAAGGTACGAGCTT 57.077 32.000 0.00 0.00 37.57 3.74
623 627 7.541122 AAAATATGAGAAAGGTACGAGCTTC 57.459 36.000 0.00 0.00 34.42 3.86
624 628 2.631418 TGAGAAAGGTACGAGCTTCG 57.369 50.000 0.00 0.00 46.93 3.79
625 629 2.156917 TGAGAAAGGTACGAGCTTCGA 58.843 47.619 11.64 0.00 43.74 3.71
626 630 2.095364 TGAGAAAGGTACGAGCTTCGAC 60.095 50.000 11.64 6.23 43.74 4.20
627 631 1.201880 AGAAAGGTACGAGCTTCGACC 59.798 52.381 11.64 12.86 43.74 4.79
628 632 1.201880 GAAAGGTACGAGCTTCGACCT 59.798 52.381 11.64 14.38 45.38 3.85
629 633 1.254954 AAGGTACGAGCTTCGACCTT 58.745 50.000 21.63 21.63 45.87 3.50
630 634 2.119801 AGGTACGAGCTTCGACCTTA 57.880 50.000 11.64 0.00 42.99 2.69
631 635 2.440409 AGGTACGAGCTTCGACCTTAA 58.560 47.619 11.64 0.00 42.99 1.85
632 636 2.821969 AGGTACGAGCTTCGACCTTAAA 59.178 45.455 11.64 0.00 42.99 1.52
633 637 3.256631 AGGTACGAGCTTCGACCTTAAAA 59.743 43.478 11.64 0.00 42.99 1.52
634 638 3.366121 GGTACGAGCTTCGACCTTAAAAC 59.634 47.826 11.64 0.00 43.74 2.43
635 639 2.056577 ACGAGCTTCGACCTTAAAACG 58.943 47.619 11.64 0.00 43.74 3.60
636 640 2.287788 ACGAGCTTCGACCTTAAAACGA 60.288 45.455 11.64 0.00 43.74 3.85
637 641 2.090195 CGAGCTTCGACCTTAAAACGAC 59.910 50.000 0.00 0.00 43.74 4.34
638 642 2.410939 AGCTTCGACCTTAAAACGACC 58.589 47.619 0.00 0.00 35.82 4.79
639 643 2.036862 AGCTTCGACCTTAAAACGACCT 59.963 45.455 0.00 0.00 35.82 3.85
640 644 2.804527 GCTTCGACCTTAAAACGACCTT 59.195 45.455 0.00 0.00 35.82 3.50
641 645 3.989817 GCTTCGACCTTAAAACGACCTTA 59.010 43.478 0.00 0.00 35.82 2.69
642 646 4.448732 GCTTCGACCTTAAAACGACCTTAA 59.551 41.667 0.00 0.00 35.82 1.85
643 647 5.613360 GCTTCGACCTTAAAACGACCTTAAC 60.613 44.000 0.00 0.00 35.82 2.01
644 648 4.306600 TCGACCTTAAAACGACCTTAACC 58.693 43.478 0.00 0.00 0.00 2.85
645 649 4.057432 CGACCTTAAAACGACCTTAACCA 58.943 43.478 0.00 0.00 0.00 3.67
646 650 4.692155 CGACCTTAAAACGACCTTAACCAT 59.308 41.667 0.00 0.00 0.00 3.55
647 651 5.179929 CGACCTTAAAACGACCTTAACCATT 59.820 40.000 0.00 0.00 0.00 3.16
648 652 6.293571 CGACCTTAAAACGACCTTAACCATTT 60.294 38.462 0.00 0.00 0.00 2.32
649 653 7.350744 ACCTTAAAACGACCTTAACCATTTT 57.649 32.000 0.00 0.00 0.00 1.82
650 654 7.784037 ACCTTAAAACGACCTTAACCATTTTT 58.216 30.769 0.00 0.00 0.00 1.94
693 697 3.103289 CGTAGCAACGCACGAGCA 61.103 61.111 5.50 0.00 43.12 4.26
694 698 2.444624 CGTAGCAACGCACGAGCAT 61.445 57.895 5.50 0.00 43.12 3.79
695 699 1.787847 GTAGCAACGCACGAGCATT 59.212 52.632 5.50 0.00 42.27 3.56
696 700 0.247301 GTAGCAACGCACGAGCATTC 60.247 55.000 5.50 0.00 42.27 2.67
697 701 0.389817 TAGCAACGCACGAGCATTCT 60.390 50.000 5.50 0.00 42.27 2.40
698 702 0.389817 AGCAACGCACGAGCATTCTA 60.390 50.000 5.50 0.00 42.27 2.10
699 703 0.247301 GCAACGCACGAGCATTCTAC 60.247 55.000 5.50 0.00 42.27 2.59
700 704 1.350193 CAACGCACGAGCATTCTACT 58.650 50.000 5.50 0.00 42.27 2.57
701 705 2.526077 CAACGCACGAGCATTCTACTA 58.474 47.619 5.50 0.00 42.27 1.82
702 706 2.476873 ACGCACGAGCATTCTACTAG 57.523 50.000 5.50 0.00 42.27 2.57
703 707 1.743958 ACGCACGAGCATTCTACTAGT 59.256 47.619 5.50 0.00 42.27 2.57
704 708 2.941064 ACGCACGAGCATTCTACTAGTA 59.059 45.455 5.50 1.89 42.27 1.82
705 709 3.564644 ACGCACGAGCATTCTACTAGTAT 59.435 43.478 2.33 0.00 42.27 2.12
706 710 4.753610 ACGCACGAGCATTCTACTAGTATA 59.246 41.667 2.33 0.00 42.27 1.47
707 711 5.080731 CGCACGAGCATTCTACTAGTATAC 58.919 45.833 2.33 0.00 42.27 1.47
708 712 5.080731 GCACGAGCATTCTACTAGTATACG 58.919 45.833 2.33 4.89 41.58 3.06
709 713 5.619513 CACGAGCATTCTACTAGTATACGG 58.380 45.833 2.33 0.00 0.00 4.02
710 714 5.178996 CACGAGCATTCTACTAGTATACGGT 59.821 44.000 2.33 8.96 0.00 4.83
711 715 5.178996 ACGAGCATTCTACTAGTATACGGTG 59.821 44.000 2.33 0.61 0.00 4.94
712 716 5.407691 CGAGCATTCTACTAGTATACGGTGA 59.592 44.000 2.33 0.00 0.00 4.02
713 717 6.401260 CGAGCATTCTACTAGTATACGGTGAG 60.401 46.154 2.33 5.54 0.00 3.51
714 718 6.297582 AGCATTCTACTAGTATACGGTGAGT 58.702 40.000 2.33 10.00 0.00 3.41
715 719 6.771749 AGCATTCTACTAGTATACGGTGAGTT 59.228 38.462 2.33 0.00 0.00 3.01
716 720 7.935755 AGCATTCTACTAGTATACGGTGAGTTA 59.064 37.037 2.33 0.54 0.00 2.24
717 721 8.014517 GCATTCTACTAGTATACGGTGAGTTAC 58.985 40.741 2.33 0.00 0.00 2.50
718 722 9.049523 CATTCTACTAGTATACGGTGAGTTACA 57.950 37.037 2.33 0.00 0.00 2.41
719 723 8.654230 TTCTACTAGTATACGGTGAGTTACAG 57.346 38.462 2.33 4.51 0.00 2.74
720 724 7.212976 TCTACTAGTATACGGTGAGTTACAGG 58.787 42.308 2.33 0.00 0.00 4.00
721 725 4.578105 ACTAGTATACGGTGAGTTACAGGC 59.422 45.833 0.00 0.00 0.00 4.85
722 726 3.359033 AGTATACGGTGAGTTACAGGCA 58.641 45.455 0.00 0.00 0.00 4.75
740 744 1.979693 AGGCTTCGCGAGAGTTCCT 60.980 57.895 9.59 9.70 43.69 3.36
742 746 1.079317 GGCTTCGCGAGAGTTCCTTC 61.079 60.000 9.59 0.00 43.69 3.46
743 747 1.406970 GCTTCGCGAGAGTTCCTTCG 61.407 60.000 9.59 0.00 43.69 3.79
744 748 0.798771 CTTCGCGAGAGTTCCTTCGG 60.799 60.000 9.59 0.00 43.69 4.30
745 749 2.202623 CGCGAGAGTTCCTTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
751 755 1.072505 GAGTTCCTTCGGGCCAACA 59.927 57.895 4.39 0.00 34.44 3.33
752 756 0.322546 GAGTTCCTTCGGGCCAACAT 60.323 55.000 4.39 0.00 34.44 2.71
761 765 1.887301 GGGCCAACATAACAACCGG 59.113 57.895 4.39 0.00 0.00 5.28
773 777 1.305201 ACAACCGGCACACTTACAAG 58.695 50.000 0.00 0.00 0.00 3.16
813 824 2.286294 GCGCATGACCTCATTGAAGTAG 59.714 50.000 0.30 0.00 33.61 2.57
814 825 3.525537 CGCATGACCTCATTGAAGTAGT 58.474 45.455 0.00 0.00 33.61 2.73
815 826 4.682787 CGCATGACCTCATTGAAGTAGTA 58.317 43.478 0.00 0.00 33.61 1.82
821 832 3.119101 ACCTCATTGAAGTAGTACTGGCG 60.119 47.826 5.39 0.00 0.00 5.69
824 835 2.823924 TTGAAGTAGTACTGGCGCAA 57.176 45.000 10.83 0.00 0.00 4.85
841 854 2.413453 CGCAACAAACTCTAGAAGAGCC 59.587 50.000 3.85 0.00 46.12 4.70
949 963 1.202330 CACCTGCCATCTCCTCTCTT 58.798 55.000 0.00 0.00 0.00 2.85
1188 1202 2.427410 GTCGGCGTCGTACGTGTT 60.427 61.111 16.05 0.00 44.73 3.32
1198 1212 0.038526 CGTACGTGTTGCTCCCTCTT 60.039 55.000 7.22 0.00 0.00 2.85
1391 1417 2.932622 GCACCAACATGTGAGATCTCGT 60.933 50.000 17.76 6.70 38.55 4.18
1469 1499 1.032014 TGCAGTTTTCTTGGTCCTGC 58.968 50.000 0.00 0.00 46.64 4.85
1478 1508 2.513026 CTTGGTCCTGCGGAGTGAGG 62.513 65.000 2.36 0.00 29.39 3.86
1580 1621 8.798859 ATAATAGATCATGTGCCAATTCTACC 57.201 34.615 0.00 0.00 0.00 3.18
1600 1641 4.204012 ACCCTGTGAATTTTTCTTCGACA 58.796 39.130 0.00 0.00 0.00 4.35
1606 1647 8.076178 CCTGTGAATTTTTCTTCGACAATAAGT 58.924 33.333 0.00 0.00 0.00 2.24
1621 1662 5.879237 ACAATAAGTATGCACATTTGTCGG 58.121 37.500 0.00 0.00 0.00 4.79
1685 1726 3.055591 CAGCCGAGTCTAATACAGCATG 58.944 50.000 0.00 0.00 46.00 4.06
1708 1749 7.316544 TGTGGAAGTTTCAGTCTAACTTTTC 57.683 36.000 2.92 1.10 43.76 2.29
1762 1804 4.279922 AGGGGTTTCGTGTAAAAAGGAATG 59.720 41.667 0.00 0.00 0.00 2.67
1763 1805 3.985279 GGGTTTCGTGTAAAAAGGAATGC 59.015 43.478 0.00 0.00 0.00 3.56
1828 1870 5.914997 GTGCAGTTAAAAATAGCACGATG 57.085 39.130 0.00 0.00 44.84 3.84
1829 1871 4.262976 GTGCAGTTAAAAATAGCACGATGC 59.737 41.667 0.00 0.00 44.84 3.91
1890 1981 8.821686 AATGGATTTCAATGGTACTGTAATGA 57.178 30.769 0.00 0.00 0.00 2.57
1934 2033 8.023706 GGTTACCATGAGTTCTCAATTTCTTTC 58.976 37.037 6.60 0.00 0.00 2.62
2194 2293 9.315525 GTTAGGATACATTCTACTTTGACCTTC 57.684 37.037 0.00 0.00 41.41 3.46
2261 2360 6.370453 ACAAGTTTCCAGTAGGTTACCAAAT 58.630 36.000 3.51 0.00 35.89 2.32
2271 2370 7.067008 CCAGTAGGTTACCAAATACAATTCAGG 59.933 40.741 3.51 0.00 0.00 3.86
2339 2438 5.687770 TTTCAAATGTTCTTCGAGCATCA 57.312 34.783 0.00 0.00 32.59 3.07
2492 2625 5.012239 GCAGGCCTAATGGATGATATCAAA 58.988 41.667 3.98 0.00 34.57 2.69
2564 2711 2.457366 AACACGACTCATCCTTCCAC 57.543 50.000 0.00 0.00 0.00 4.02
2683 2830 6.728200 TGTCACTGATTCAGAATTGTGTTTC 58.272 36.000 20.33 15.22 35.18 2.78
2815 2962 4.949856 CCAGTTTAAGGTACAGATGGCAAT 59.050 41.667 0.00 0.00 0.00 3.56
2880 3031 3.129871 TGCAGCTGTATTTTTGTTTGGC 58.870 40.909 16.64 0.00 0.00 4.52
3132 3287 7.251281 TGTTCTCACTTAAGTATCGATGTCTG 58.749 38.462 8.04 0.00 0.00 3.51
3136 3297 5.805486 TCACTTAAGTATCGATGTCTGTTGC 59.195 40.000 8.04 0.00 0.00 4.17
3235 3403 7.416022 CAGTAATTTCTCTGAATTGAGGATGC 58.584 38.462 0.00 0.00 34.98 3.91
3269 3440 4.380141 TTGTGCACTGTGTACAGCCTGA 62.380 50.000 26.27 12.72 43.48 3.86
3326 3497 5.494724 TGCAGATGCTCTTGAAGAGTAAAT 58.505 37.500 22.01 13.77 44.12 1.40
3412 3588 4.537135 TTTCCGCTCTATTCACTGAAGT 57.463 40.909 0.00 0.00 0.00 3.01
3486 3753 5.826643 ACTTTTCATATGTTTCCTAGGCCA 58.173 37.500 5.01 0.62 0.00 5.36
3693 3961 5.899631 AGGAGGTCAAGGTAAACTACAAA 57.100 39.130 0.00 0.00 0.00 2.83
3708 3976 9.551734 GTAAACTACAAAGTCCTTCTTCCTAAA 57.448 33.333 0.00 0.00 33.75 1.85
3718 3986 7.136203 AGTCCTTCTTCCTAAATCCTGACTAT 58.864 38.462 0.00 0.00 0.00 2.12
3779 4047 7.587037 TCATAGGAATTGATGGGTTTGATTC 57.413 36.000 0.00 0.00 0.00 2.52
3936 4206 5.902613 TGCCCATCAAGATCTTTTTACTG 57.097 39.130 4.86 0.00 0.00 2.74
3952 4222 0.783850 ACTGTAATTTGGGCTGGGGT 59.216 50.000 0.00 0.00 0.00 4.95
3954 4224 2.025321 ACTGTAATTTGGGCTGGGGTAG 60.025 50.000 0.00 0.00 0.00 3.18
3955 4225 2.241176 CTGTAATTTGGGCTGGGGTAGA 59.759 50.000 0.00 0.00 0.00 2.59
3974 4244 2.305635 AGATCACTGCCCACATGTAACA 59.694 45.455 0.00 0.00 0.00 2.41
3978 4248 1.167851 CTGCCCACATGTAACAGGTG 58.832 55.000 0.00 0.00 44.32 4.00
3979 4249 0.476338 TGCCCACATGTAACAGGTGT 59.524 50.000 0.00 0.00 43.39 4.16
3980 4250 0.881118 GCCCACATGTAACAGGTGTG 59.119 55.000 0.00 8.94 43.39 3.82
3984 4254 1.798223 CACATGTAACAGGTGTGGACG 59.202 52.381 0.00 0.00 40.60 4.79
3985 4255 0.796312 CATGTAACAGGTGTGGACGC 59.204 55.000 0.00 0.00 0.00 5.19
3986 4256 0.321298 ATGTAACAGGTGTGGACGCC 60.321 55.000 0.77 0.77 46.57 5.68
3992 4262 4.073052 GGTGTGGACGCCATTTGA 57.927 55.556 4.43 0.00 45.55 2.69
3993 4263 1.875963 GGTGTGGACGCCATTTGAG 59.124 57.895 4.43 0.00 45.55 3.02
3994 4264 0.889186 GGTGTGGACGCCATTTGAGT 60.889 55.000 4.43 0.00 45.55 3.41
3995 4265 0.951558 GTGTGGACGCCATTTGAGTT 59.048 50.000 1.90 0.00 35.28 3.01
3996 4266 2.147958 GTGTGGACGCCATTTGAGTTA 58.852 47.619 1.90 0.00 35.28 2.24
3997 4267 2.159627 GTGTGGACGCCATTTGAGTTAG 59.840 50.000 1.90 0.00 35.28 2.34
3998 4268 2.037902 TGTGGACGCCATTTGAGTTAGA 59.962 45.455 1.90 0.00 35.28 2.10
3999 4269 3.270877 GTGGACGCCATTTGAGTTAGAT 58.729 45.455 1.90 0.00 35.28 1.98
4000 4270 3.309954 GTGGACGCCATTTGAGTTAGATC 59.690 47.826 1.90 0.00 35.28 2.75
4001 4271 3.055458 TGGACGCCATTTGAGTTAGATCA 60.055 43.478 0.00 0.00 0.00 2.92
4002 4272 3.309954 GGACGCCATTTGAGTTAGATCAC 59.690 47.826 0.00 0.00 0.00 3.06
4003 4273 4.184629 GACGCCATTTGAGTTAGATCACT 58.815 43.478 0.00 0.00 0.00 3.41
4004 4274 5.339008 ACGCCATTTGAGTTAGATCACTA 57.661 39.130 0.00 0.00 0.00 2.74
4005 4275 5.109903 ACGCCATTTGAGTTAGATCACTAC 58.890 41.667 0.00 0.00 0.00 2.73
4006 4276 4.508124 CGCCATTTGAGTTAGATCACTACC 59.492 45.833 0.00 0.00 0.00 3.18
4007 4277 4.816925 GCCATTTGAGTTAGATCACTACCC 59.183 45.833 0.00 0.00 0.00 3.69
4008 4278 5.629133 GCCATTTGAGTTAGATCACTACCCA 60.629 44.000 0.00 0.00 0.00 4.51
4009 4279 5.817816 CCATTTGAGTTAGATCACTACCCAC 59.182 44.000 0.00 0.00 0.00 4.61
4010 4280 6.406370 CATTTGAGTTAGATCACTACCCACA 58.594 40.000 0.00 0.00 0.00 4.17
4011 4281 6.620877 TTTGAGTTAGATCACTACCCACAT 57.379 37.500 0.00 0.00 0.00 3.21
4012 4282 5.598416 TGAGTTAGATCACTACCCACATG 57.402 43.478 0.00 0.00 0.00 3.21
4013 4283 4.141937 TGAGTTAGATCACTACCCACATGC 60.142 45.833 0.00 0.00 0.00 4.06
4014 4284 3.134804 AGTTAGATCACTACCCACATGCC 59.865 47.826 0.00 0.00 0.00 4.40
4015 4285 0.839946 AGATCACTACCCACATGCCC 59.160 55.000 0.00 0.00 0.00 5.36
4016 4286 0.546122 GATCACTACCCACATGCCCA 59.454 55.000 0.00 0.00 0.00 5.36
4017 4287 1.143684 GATCACTACCCACATGCCCAT 59.856 52.381 0.00 0.00 0.00 4.00
4018 4288 0.546122 TCACTACCCACATGCCCATC 59.454 55.000 0.00 0.00 0.00 3.51
4019 4289 0.255604 CACTACCCACATGCCCATCA 59.744 55.000 0.00 0.00 0.00 3.07
4020 4290 0.998928 ACTACCCACATGCCCATCAA 59.001 50.000 0.00 0.00 0.00 2.57
4021 4291 1.064463 ACTACCCACATGCCCATCAAG 60.064 52.381 0.00 0.00 0.00 3.02
4022 4292 1.212688 CTACCCACATGCCCATCAAGA 59.787 52.381 0.00 0.00 0.00 3.02
4023 4293 0.632835 ACCCACATGCCCATCAAGAT 59.367 50.000 0.00 0.00 0.00 2.40
4024 4294 1.852309 ACCCACATGCCCATCAAGATA 59.148 47.619 0.00 0.00 0.00 1.98
4025 4295 2.448194 ACCCACATGCCCATCAAGATAT 59.552 45.455 0.00 0.00 0.00 1.63
4026 4296 3.117016 ACCCACATGCCCATCAAGATATT 60.117 43.478 0.00 0.00 0.00 1.28
4027 4297 3.899360 CCCACATGCCCATCAAGATATTT 59.101 43.478 0.00 0.00 0.00 1.40
4028 4298 4.345837 CCCACATGCCCATCAAGATATTTT 59.654 41.667 0.00 0.00 0.00 1.82
4062 4334 3.582164 TCTTGGCCAACATAAAAGGGTT 58.418 40.909 16.05 0.00 0.00 4.11
4064 4336 5.148502 TCTTGGCCAACATAAAAGGGTTTA 58.851 37.500 16.05 0.00 33.76 2.01
4066 4338 3.835395 TGGCCAACATAAAAGGGTTTAGG 59.165 43.478 0.61 0.00 37.10 2.69
4067 4339 4.090819 GGCCAACATAAAAGGGTTTAGGA 58.909 43.478 0.00 0.00 35.15 2.94
4070 4342 4.159693 CCAACATAAAAGGGTTTAGGAGCC 59.840 45.833 0.00 0.00 46.62 4.70
4086 4358 1.667510 GCCATTTGGGTTTGCACCG 60.668 57.895 0.00 0.00 45.39 4.94
4109 4381 1.334869 GCAAAGCATTCGGGTAGGATG 59.665 52.381 0.00 0.00 0.00 3.51
4115 4387 1.072173 CATTCGGGTAGGATGATGCCA 59.928 52.381 0.00 0.00 0.00 4.92
4124 4396 2.607499 AGGATGATGCCAGGAGAGTAG 58.393 52.381 0.00 0.00 0.00 2.57
4126 4398 3.172339 GGATGATGCCAGGAGAGTAGAT 58.828 50.000 0.00 0.00 0.00 1.98
4157 4432 3.181438 TGCTTTGGCCTCAGTACCTAAAA 60.181 43.478 3.32 0.00 37.74 1.52
4158 4433 4.017126 GCTTTGGCCTCAGTACCTAAAAT 58.983 43.478 3.32 0.00 0.00 1.82
4192 4469 9.451002 AAATTGATCAATTGATTGTGGCAAATA 57.549 25.926 29.52 1.64 40.57 1.40
4194 4471 8.426881 TTGATCAATTGATTGTGGCAAATATG 57.573 30.769 21.57 0.00 38.84 1.78
4211 4488 2.908688 ATGTTGCCCCTGTTTCAAAC 57.091 45.000 0.00 0.00 0.00 2.93
4251 4528 6.819146 GGAAGTTACACTCCTTAGAATGGAAG 59.181 42.308 0.00 0.00 32.61 3.46
4297 4574 9.816787 AAGGTAATTAGTTCCCATAAAAACTGA 57.183 29.630 0.00 0.00 36.44 3.41
4318 4595 0.622665 ATCTGGAGGCCCTGTCTTTG 59.377 55.000 0.00 0.00 33.58 2.77
4321 4598 1.360393 TGGAGGCCCTGTCTTTGGTT 61.360 55.000 0.00 0.00 0.00 3.67
4323 4600 0.895559 GAGGCCCTGTCTTTGGTTGG 60.896 60.000 0.00 0.00 0.00 3.77
4324 4601 2.574018 GGCCCTGTCTTTGGTTGGC 61.574 63.158 0.00 0.00 38.16 4.52
4325 4602 1.531602 GCCCTGTCTTTGGTTGGCT 60.532 57.895 0.00 0.00 35.99 4.75
4335 4612 0.768221 TTGGTTGGCTCCCTCAGACT 60.768 55.000 0.00 0.00 0.00 3.24
4358 4635 1.773541 AACCTTGGGGAAGGAGGAAT 58.226 50.000 7.84 0.00 42.62 3.01
4360 4637 1.002857 CCTTGGGGAAGGAGGAATGT 58.997 55.000 0.00 0.00 42.62 2.71
4361 4638 1.359130 CCTTGGGGAAGGAGGAATGTT 59.641 52.381 0.00 0.00 42.62 2.71
4407 4684 3.866703 TCTGTTGTATGGTGGGAACAA 57.133 42.857 0.00 0.00 46.06 2.83
4434 4712 8.713271 CACTCACTTTAACCTTCTAAGATGTTC 58.287 37.037 0.00 0.00 0.00 3.18
4450 4728 5.790593 AGATGTTCTGATGCTGCAAATTTT 58.209 33.333 6.36 0.00 0.00 1.82
4455 4733 3.575256 TCTGATGCTGCAAATTTTCTGGT 59.425 39.130 6.36 0.00 0.00 4.00
4466 4744 5.163774 GCAAATTTTCTGGTTTCAAACAGCA 60.164 36.000 1.93 0.00 34.76 4.41
4467 4745 6.458615 GCAAATTTTCTGGTTTCAAACAGCAT 60.459 34.615 1.93 0.00 34.76 3.79
4633 4912 5.659048 AAAGAGAGTGCTTTACTTTCGTG 57.341 39.130 0.00 0.00 43.40 4.35
4736 5015 3.181465 ACTCGTAATGGCAGGATAAGGTG 60.181 47.826 0.00 0.00 0.00 4.00
4740 5019 1.216064 ATGGCAGGATAAGGTGCTCA 58.784 50.000 0.00 0.00 39.76 4.26
4762 5041 9.196552 GCTCATAATTGCTTAACAGAAAGTTTT 57.803 29.630 0.00 0.00 41.64 2.43
4797 5076 8.883954 TTTCTCAATACATCTCTCTGCATTAG 57.116 34.615 0.00 0.00 0.00 1.73
4798 5077 7.594351 TCTCAATACATCTCTCTGCATTAGT 57.406 36.000 0.00 0.00 0.00 2.24
4799 5078 7.432059 TCTCAATACATCTCTCTGCATTAGTG 58.568 38.462 0.00 0.00 0.00 2.74
5124 5454 3.274288 GAGGATGCCCTAACACTGAAAG 58.726 50.000 0.00 0.00 44.53 2.62
5175 5583 2.513753 TGGAACCATCACATCCACAAC 58.486 47.619 0.00 0.00 38.30 3.32
5208 5616 2.214347 TGGTGTCCAACATAACACGTG 58.786 47.619 15.48 15.48 45.31 4.49
5273 5681 6.392354 ACTGTTAATGCCACAAAATGAGATG 58.608 36.000 0.00 0.00 0.00 2.90
5279 5687 2.418197 GCCACAAAATGAGATGCTGCAT 60.418 45.455 16.20 16.20 0.00 3.96
5286 5694 4.347360 AATGAGATGCTGCATGCTAGTA 57.653 40.909 21.53 14.01 43.37 1.82
5287 5695 3.825143 TGAGATGCTGCATGCTAGTAA 57.175 42.857 21.53 7.93 43.37 2.24
5298 5706 8.849168 TGCTGCATGCTAGTAAATAATTATGTT 58.151 29.630 20.33 0.00 43.37 2.71
5379 6274 5.902613 ATATATTGATGATGGGGTTTGCG 57.097 39.130 0.00 0.00 0.00 4.85
5409 6334 5.867903 AGGTTCTCCTCTTGACATATGAG 57.132 43.478 10.38 0.00 40.58 2.90
5411 6336 5.598005 AGGTTCTCCTCTTGACATATGAGAG 59.402 44.000 10.38 10.96 40.58 3.20
5438 6363 5.106436 TGCAGCATCAGAAATAAAGTGACAG 60.106 40.000 0.00 0.00 0.00 3.51
5463 6494 8.211629 AGAAAACTTATTCTACTCACTTGTGGT 58.788 33.333 0.64 1.33 37.88 4.16
5468 6499 3.111853 TCTACTCACTTGTGGTTGCTG 57.888 47.619 0.64 0.00 0.00 4.41
5497 6528 1.861971 CTACGGGTTATCGGGCTTTC 58.138 55.000 0.00 0.00 0.00 2.62
5499 6530 1.885850 CGGGTTATCGGGCTTTCGG 60.886 63.158 0.00 0.00 0.00 4.30
5508 6539 2.771639 GGGCTTTCGGCGGATTTCC 61.772 63.158 7.21 0.00 42.94 3.13
5800 6888 6.093633 AGCCAGGAATATTCGTTTTCAACTAC 59.906 38.462 7.92 0.00 0.00 2.73
5806 6894 8.621286 GGAATATTCGTTTTCAACTACATGGAT 58.379 33.333 9.32 0.00 0.00 3.41
5870 6961 9.798885 GCGCAACACAAAAATAACAATTTTATA 57.201 25.926 0.30 0.00 33.77 0.98
5892 6983 5.786264 AATAACTACTACATCCGTCCTGG 57.214 43.478 0.00 0.00 40.09 4.45
5893 6984 2.822707 ACTACTACATCCGTCCTGGT 57.177 50.000 0.00 0.00 39.52 4.00
5894 6985 3.939740 ACTACTACATCCGTCCTGGTA 57.060 47.619 0.00 0.00 39.52 3.25
5895 6986 4.450305 ACTACTACATCCGTCCTGGTAT 57.550 45.455 0.00 0.00 39.52 2.73
5896 6987 4.142790 ACTACTACATCCGTCCTGGTATG 58.857 47.826 0.00 0.00 39.52 2.39
5897 6988 3.028094 ACTACATCCGTCCTGGTATGT 57.972 47.619 0.00 3.18 39.89 2.29
5898 6989 3.371965 ACTACATCCGTCCTGGTATGTT 58.628 45.455 10.35 0.00 38.55 2.71
5899 6990 2.691409 ACATCCGTCCTGGTATGTTG 57.309 50.000 0.00 0.00 35.99 3.33
5900 6991 2.184533 ACATCCGTCCTGGTATGTTGA 58.815 47.619 0.00 0.00 35.99 3.18
5901 6992 2.569853 ACATCCGTCCTGGTATGTTGAA 59.430 45.455 0.00 0.00 35.99 2.69
5902 6993 3.008594 ACATCCGTCCTGGTATGTTGAAA 59.991 43.478 0.00 0.00 35.99 2.69
5903 6994 3.992943 TCCGTCCTGGTATGTTGAAAT 57.007 42.857 0.00 0.00 39.52 2.17
5904 6995 5.104693 ACATCCGTCCTGGTATGTTGAAATA 60.105 40.000 0.00 0.00 35.99 1.40
5905 6996 4.761975 TCCGTCCTGGTATGTTGAAATAC 58.238 43.478 0.00 0.00 39.52 1.89
5906 6997 4.223255 TCCGTCCTGGTATGTTGAAATACA 59.777 41.667 0.00 0.00 39.52 2.29
5907 6998 4.938832 CCGTCCTGGTATGTTGAAATACAA 59.061 41.667 0.00 0.00 35.16 2.41
5908 6999 5.413213 CCGTCCTGGTATGTTGAAATACAAA 59.587 40.000 0.00 0.00 40.36 2.83
5909 7000 6.094881 CCGTCCTGGTATGTTGAAATACAAAT 59.905 38.462 0.00 0.00 40.36 2.32
5910 7001 7.186804 CGTCCTGGTATGTTGAAATACAAATC 58.813 38.462 0.00 0.00 40.36 2.17
5911 7002 7.480810 GTCCTGGTATGTTGAAATACAAATCC 58.519 38.462 0.00 0.00 40.36 3.01
5912 7003 7.122055 GTCCTGGTATGTTGAAATACAAATCCA 59.878 37.037 0.00 0.00 40.36 3.41
5913 7004 7.671819 TCCTGGTATGTTGAAATACAAATCCAA 59.328 33.333 0.00 0.00 40.36 3.53
5914 7005 7.759433 CCTGGTATGTTGAAATACAAATCCAAC 59.241 37.037 0.00 0.00 40.36 3.77
5915 7006 7.309177 TGGTATGTTGAAATACAAATCCAACG 58.691 34.615 0.00 0.00 40.36 4.10
5916 7007 7.175119 TGGTATGTTGAAATACAAATCCAACGA 59.825 33.333 0.00 0.00 40.36 3.85
5917 7008 8.188139 GGTATGTTGAAATACAAATCCAACGAT 58.812 33.333 0.00 0.00 40.36 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.220749 GATGAACTGCACCCGGCTA 59.779 57.895 0.00 0.00 45.15 3.93
194 195 0.755686 CCCAGATAGTGGCCAGACTC 59.244 60.000 5.11 2.44 46.45 3.36
352 353 2.162208 CGACCCTCCATTGTTGATGTTG 59.838 50.000 0.00 0.00 33.71 3.33
494 497 1.367471 CGACCCACTGCAAGAGACA 59.633 57.895 0.00 0.00 37.43 3.41
534 538 3.938963 GAGGAATACAAGCAATGTCGGAA 59.061 43.478 0.00 0.00 42.70 4.30
535 539 3.055458 TGAGGAATACAAGCAATGTCGGA 60.055 43.478 0.00 0.00 42.70 4.55
603 607 3.943381 TCGAAGCTCGTACCTTTCTCATA 59.057 43.478 0.00 0.00 41.35 2.15
604 608 2.753452 TCGAAGCTCGTACCTTTCTCAT 59.247 45.455 0.00 0.00 41.35 2.90
605 609 2.095364 GTCGAAGCTCGTACCTTTCTCA 60.095 50.000 0.00 0.00 41.35 3.27
606 610 2.517935 GTCGAAGCTCGTACCTTTCTC 58.482 52.381 0.00 0.00 41.35 2.87
607 611 1.201880 GGTCGAAGCTCGTACCTTTCT 59.798 52.381 13.99 0.00 41.35 2.52
608 612 1.201880 AGGTCGAAGCTCGTACCTTTC 59.798 52.381 16.18 0.00 42.99 2.62
609 613 1.254954 AGGTCGAAGCTCGTACCTTT 58.745 50.000 16.18 4.81 42.99 3.11
610 614 1.254954 AAGGTCGAAGCTCGTACCTT 58.745 50.000 21.63 21.63 45.87 3.50
611 615 2.119801 TAAGGTCGAAGCTCGTACCT 57.880 50.000 16.18 16.18 45.38 3.08
612 616 2.927553 TTAAGGTCGAAGCTCGTACC 57.072 50.000 13.68 13.68 41.35 3.34
613 617 3.058651 CGTTTTAAGGTCGAAGCTCGTAC 59.941 47.826 0.00 0.00 41.35 3.67
614 618 3.058293 TCGTTTTAAGGTCGAAGCTCGTA 60.058 43.478 0.00 0.00 41.35 3.43
615 619 2.056577 CGTTTTAAGGTCGAAGCTCGT 58.943 47.619 0.00 0.00 41.35 4.18
616 620 2.090195 GTCGTTTTAAGGTCGAAGCTCG 59.910 50.000 0.00 0.00 42.10 5.03
617 621 2.411069 GGTCGTTTTAAGGTCGAAGCTC 59.589 50.000 0.00 0.00 35.44 4.09
618 622 2.036862 AGGTCGTTTTAAGGTCGAAGCT 59.963 45.455 0.00 0.00 35.44 3.74
619 623 2.410939 AGGTCGTTTTAAGGTCGAAGC 58.589 47.619 0.00 0.00 35.44 3.86
620 624 5.107337 GGTTAAGGTCGTTTTAAGGTCGAAG 60.107 44.000 0.00 0.00 35.44 3.79
621 625 4.749598 GGTTAAGGTCGTTTTAAGGTCGAA 59.250 41.667 0.00 0.00 35.44 3.71
622 626 4.202202 TGGTTAAGGTCGTTTTAAGGTCGA 60.202 41.667 0.00 0.00 0.00 4.20
623 627 4.057432 TGGTTAAGGTCGTTTTAAGGTCG 58.943 43.478 0.00 0.00 0.00 4.79
624 628 6.564709 AATGGTTAAGGTCGTTTTAAGGTC 57.435 37.500 0.00 0.00 0.00 3.85
625 629 6.964807 AAATGGTTAAGGTCGTTTTAAGGT 57.035 33.333 0.00 0.00 0.00 3.50
658 662 9.326413 GTTGCTACGGGCTATAATGATATAAAT 57.674 33.333 4.43 0.00 42.39 1.40
659 663 7.490079 CGTTGCTACGGGCTATAATGATATAAA 59.510 37.037 13.04 0.00 43.94 1.40
660 664 6.976349 CGTTGCTACGGGCTATAATGATATAA 59.024 38.462 13.04 0.00 43.94 0.98
661 665 6.500910 CGTTGCTACGGGCTATAATGATATA 58.499 40.000 13.04 0.00 43.94 0.86
662 666 5.348986 CGTTGCTACGGGCTATAATGATAT 58.651 41.667 13.04 0.00 43.94 1.63
663 667 4.740268 CGTTGCTACGGGCTATAATGATA 58.260 43.478 13.04 0.00 43.94 2.15
664 668 3.585862 CGTTGCTACGGGCTATAATGAT 58.414 45.455 13.04 0.00 43.94 2.45
665 669 3.021269 CGTTGCTACGGGCTATAATGA 57.979 47.619 13.04 0.00 43.94 2.57
677 681 1.787847 AATGCTCGTGCGTTGCTAC 59.212 52.632 15.59 0.00 45.65 3.58
678 682 4.277239 AATGCTCGTGCGTTGCTA 57.723 50.000 15.59 0.00 45.65 3.49
683 687 1.743958 ACTAGTAGAATGCTCGTGCGT 59.256 47.619 3.59 0.99 43.34 5.24
684 688 2.476873 ACTAGTAGAATGCTCGTGCG 57.523 50.000 3.59 0.00 43.34 5.34
685 689 5.080731 CGTATACTAGTAGAATGCTCGTGC 58.919 45.833 8.85 1.71 40.20 5.34
686 690 5.178996 ACCGTATACTAGTAGAATGCTCGTG 59.821 44.000 8.85 1.41 28.26 4.35
687 691 5.178996 CACCGTATACTAGTAGAATGCTCGT 59.821 44.000 8.85 0.00 30.70 4.18
688 692 5.407691 TCACCGTATACTAGTAGAATGCTCG 59.592 44.000 8.85 3.42 29.76 5.03
689 693 6.427547 ACTCACCGTATACTAGTAGAATGCTC 59.572 42.308 8.85 0.00 29.76 4.26
690 694 6.297582 ACTCACCGTATACTAGTAGAATGCT 58.702 40.000 8.85 0.00 33.55 3.79
691 695 6.557291 ACTCACCGTATACTAGTAGAATGC 57.443 41.667 8.85 0.00 0.00 3.56
692 696 9.049523 TGTAACTCACCGTATACTAGTAGAATG 57.950 37.037 8.85 4.76 0.00 2.67
693 697 9.270640 CTGTAACTCACCGTATACTAGTAGAAT 57.729 37.037 8.85 0.00 0.00 2.40
694 698 7.712639 CCTGTAACTCACCGTATACTAGTAGAA 59.287 40.741 8.85 0.00 0.00 2.10
695 699 7.212976 CCTGTAACTCACCGTATACTAGTAGA 58.787 42.308 8.85 0.12 0.00 2.59
696 700 6.073331 GCCTGTAACTCACCGTATACTAGTAG 60.073 46.154 8.85 0.00 0.00 2.57
697 701 5.760253 GCCTGTAACTCACCGTATACTAGTA 59.240 44.000 4.77 4.77 0.00 1.82
698 702 4.578105 GCCTGTAACTCACCGTATACTAGT 59.422 45.833 0.00 0.00 0.00 2.57
699 703 4.577693 TGCCTGTAACTCACCGTATACTAG 59.422 45.833 0.56 0.00 0.00 2.57
700 704 4.525996 TGCCTGTAACTCACCGTATACTA 58.474 43.478 0.56 0.00 0.00 1.82
701 705 3.359033 TGCCTGTAACTCACCGTATACT 58.641 45.455 0.56 0.00 0.00 2.12
702 706 3.490419 CCTGCCTGTAACTCACCGTATAC 60.490 52.174 0.00 0.00 0.00 1.47
703 707 2.691526 CCTGCCTGTAACTCACCGTATA 59.308 50.000 0.00 0.00 0.00 1.47
704 708 1.480954 CCTGCCTGTAACTCACCGTAT 59.519 52.381 0.00 0.00 0.00 3.06
705 709 0.892755 CCTGCCTGTAACTCACCGTA 59.107 55.000 0.00 0.00 0.00 4.02
706 710 1.671742 CCTGCCTGTAACTCACCGT 59.328 57.895 0.00 0.00 0.00 4.83
707 711 1.741770 GCCTGCCTGTAACTCACCG 60.742 63.158 0.00 0.00 0.00 4.94
708 712 0.036875 AAGCCTGCCTGTAACTCACC 59.963 55.000 0.00 0.00 0.00 4.02
709 713 1.443802 GAAGCCTGCCTGTAACTCAC 58.556 55.000 0.00 0.00 0.00 3.51
710 714 0.037326 CGAAGCCTGCCTGTAACTCA 60.037 55.000 0.00 0.00 0.00 3.41
711 715 2.755929 CGAAGCCTGCCTGTAACTC 58.244 57.895 0.00 0.00 0.00 3.01
740 744 1.249407 GGTTGTTATGTTGGCCCGAA 58.751 50.000 0.00 0.00 0.00 4.30
742 746 1.504446 CGGTTGTTATGTTGGCCCG 59.496 57.895 0.00 0.00 0.00 6.13
743 747 1.887301 CCGGTTGTTATGTTGGCCC 59.113 57.895 0.00 0.00 0.00 5.80
744 748 1.214325 GCCGGTTGTTATGTTGGCC 59.786 57.895 1.90 0.00 36.51 5.36
745 749 0.388006 GTGCCGGTTGTTATGTTGGC 60.388 55.000 1.90 0.00 42.76 4.52
751 755 3.128852 TGTAAGTGTGCCGGTTGTTAT 57.871 42.857 1.90 0.00 0.00 1.89
752 756 2.616634 TGTAAGTGTGCCGGTTGTTA 57.383 45.000 1.90 0.00 0.00 2.41
761 765 2.038033 TGGGACCTACTTGTAAGTGTGC 59.962 50.000 7.50 3.42 40.07 4.57
800 811 3.448686 CGCCAGTACTACTTCAATGAGG 58.551 50.000 0.00 0.00 0.00 3.86
801 812 2.860735 GCGCCAGTACTACTTCAATGAG 59.139 50.000 0.00 0.00 0.00 2.90
813 824 1.226746 AGAGTTTGTTGCGCCAGTAC 58.773 50.000 4.18 0.00 0.00 2.73
814 825 2.297880 TCTAGAGTTTGTTGCGCCAGTA 59.702 45.455 4.18 0.00 0.00 2.74
815 826 1.070134 TCTAGAGTTTGTTGCGCCAGT 59.930 47.619 4.18 0.00 0.00 4.00
821 832 2.744741 GGGCTCTTCTAGAGTTTGTTGC 59.255 50.000 5.67 0.00 44.12 4.17
824 835 3.008485 CCTTGGGCTCTTCTAGAGTTTGT 59.992 47.826 5.67 0.00 44.12 2.83
841 854 0.895559 GTTCTGTTCCAGGGCCTTGG 60.896 60.000 27.81 27.81 39.70 3.61
920 934 1.136329 ATGGCAGGTGACTTGGGTCT 61.136 55.000 0.00 0.00 42.54 3.85
949 963 4.074526 GGTCGCTGCTGCTGGAGA 62.075 66.667 16.29 0.39 36.97 3.71
1113 1127 3.458163 GTGACGCCGAGGATGGGA 61.458 66.667 0.00 0.00 35.02 4.37
1188 1202 1.625818 GTGAAGAGGAAAGAGGGAGCA 59.374 52.381 0.00 0.00 0.00 4.26
1198 1212 1.377202 GCATGCGGGTGAAGAGGAA 60.377 57.895 0.00 0.00 0.00 3.36
1391 1417 1.374947 CCAGAGGAAAGGCGGACAA 59.625 57.895 0.00 0.00 0.00 3.18
1478 1508 6.685828 CACGTCAATTCATCATCAATTGAGTC 59.314 38.462 14.54 0.00 46.18 3.36
1480 1510 5.969435 CCACGTCAATTCATCATCAATTGAG 59.031 40.000 14.54 6.44 46.18 3.02
1580 1621 8.076178 ACTTATTGTCGAAGAAAAATTCACAGG 58.924 33.333 0.00 0.00 37.26 4.00
1600 1641 6.509418 AACCGACAAATGTGCATACTTATT 57.491 33.333 0.00 0.00 0.00 1.40
1606 1647 2.413502 GCGAAACCGACAAATGTGCATA 60.414 45.455 0.00 0.00 0.00 3.14
1621 1662 7.373441 CCGTCAATAATTTCTTGATAGCGAAAC 59.627 37.037 6.46 0.00 35.26 2.78
1685 1726 7.410485 CAGAAAAGTTAGACTGAAACTTCCAC 58.590 38.462 4.25 1.07 44.35 4.02
1708 1749 0.394192 TGTGGACTCTCAAGGTGCAG 59.606 55.000 0.00 0.00 35.83 4.41
1799 1841 1.681538 TTTTTAACTGCACAGCCGGA 58.318 45.000 5.05 0.00 0.00 5.14
1828 1870 6.783892 TTTGCATTCTTGTAAATTTGGAGC 57.216 33.333 0.00 0.00 33.27 4.70
1890 1981 8.393671 TGGTAACCGTTCATGTACTAAAATTT 57.606 30.769 0.77 0.00 0.00 1.82
1909 2000 8.023706 GGAAAGAAATTGAGAACTCATGGTAAC 58.976 37.037 5.34 0.00 39.64 2.50
1913 2004 5.713861 AGGGAAAGAAATTGAGAACTCATGG 59.286 40.000 5.34 0.00 39.64 3.66
1943 2042 6.150641 GGAAGGTACTCCCTGTTTTACAAATC 59.849 42.308 0.00 0.00 45.47 2.17
2194 2293 0.392863 TCGGCACCCATGAATGTGAG 60.393 55.000 12.36 6.78 34.37 3.51
2248 2347 7.066645 GTCCCTGAATTGTATTTGGTAACCTAC 59.933 40.741 0.00 0.00 0.00 3.18
2261 2360 4.462483 GCTCAATTTGGTCCCTGAATTGTA 59.538 41.667 17.39 9.36 40.13 2.41
2271 2370 3.270877 ACGACTATGCTCAATTTGGTCC 58.729 45.455 0.00 0.00 0.00 4.46
2339 2438 0.904865 TCAGAGGGTGCCAACTCGAT 60.905 55.000 0.00 0.00 38.72 3.59
2381 2514 3.833650 TCCAAATGTTGTGATGGCTGAAT 59.166 39.130 0.00 0.00 32.87 2.57
2492 2625 7.940850 ACAGCACTTGTAAAAATGTTCATACT 58.059 30.769 0.00 0.00 38.56 2.12
2815 2962 3.631250 GGAGTGGCCATTCTCCAATTTA 58.369 45.455 29.12 0.00 46.59 1.40
2913 3064 1.298340 CCCTTGGTACGCCATGTCA 59.702 57.895 0.00 0.00 45.56 3.58
2931 3082 1.454847 TGGGTCACCACTGGCAAAC 60.455 57.895 0.00 0.00 43.37 2.93
3117 3272 5.102313 CAGTGCAACAGACATCGATACTTA 58.898 41.667 0.00 0.00 41.43 2.24
3128 3283 0.035458 AGGTAGCCAGTGCAACAGAC 59.965 55.000 0.00 0.00 41.43 3.51
3132 3287 2.230660 AGAAAAGGTAGCCAGTGCAAC 58.769 47.619 0.00 0.00 41.13 4.17
3136 3297 8.738645 ATAGAAATAAGAAAAGGTAGCCAGTG 57.261 34.615 0.00 0.00 0.00 3.66
3235 3403 5.858049 CACAGTGCACAAATAAACATACTGG 59.142 40.000 21.04 0.00 38.77 4.00
3486 3753 7.988937 TGTTAAAATATAGGAGATCAGGCCAT 58.011 34.615 5.01 0.00 0.00 4.40
3693 3961 5.346270 AGTCAGGATTTAGGAAGAAGGACT 58.654 41.667 0.00 0.00 0.00 3.85
3759 4027 5.582953 TCAGAATCAAACCCATCAATTCCT 58.417 37.500 0.00 0.00 0.00 3.36
3761 4029 6.690530 TGTTCAGAATCAAACCCATCAATTC 58.309 36.000 0.00 0.00 0.00 2.17
3764 4032 6.669125 AATGTTCAGAATCAAACCCATCAA 57.331 33.333 0.00 0.00 0.00 2.57
3800 4068 7.574021 TCAGCCATACCCTGAGATAATAAAT 57.426 36.000 0.00 0.00 34.59 1.40
3807 4075 1.898472 CGATCAGCCATACCCTGAGAT 59.102 52.381 0.00 0.00 42.11 2.75
3915 4183 5.904362 ACAGTAAAAAGATCTTGATGGGC 57.096 39.130 9.17 0.00 0.00 5.36
3936 4206 3.117663 TGATCTACCCCAGCCCAAATTAC 60.118 47.826 0.00 0.00 0.00 1.89
3952 4222 3.517500 TGTTACATGTGGGCAGTGATCTA 59.482 43.478 9.11 0.00 0.00 1.98
3954 4224 2.679837 CTGTTACATGTGGGCAGTGATC 59.320 50.000 9.11 0.00 0.00 2.92
3955 4225 2.618816 CCTGTTACATGTGGGCAGTGAT 60.619 50.000 9.11 0.00 0.00 3.06
3974 4244 0.606401 CTCAAATGGCGTCCACACCT 60.606 55.000 0.50 0.00 35.80 4.00
3978 4248 2.695359 TCTAACTCAAATGGCGTCCAC 58.305 47.619 0.50 0.00 35.80 4.02
3979 4249 3.055458 TGATCTAACTCAAATGGCGTCCA 60.055 43.478 1.01 1.01 38.19 4.02
3980 4250 3.309954 GTGATCTAACTCAAATGGCGTCC 59.690 47.826 0.00 0.00 0.00 4.79
3981 4251 4.184629 AGTGATCTAACTCAAATGGCGTC 58.815 43.478 0.00 0.00 0.00 5.19
3982 4252 4.207891 AGTGATCTAACTCAAATGGCGT 57.792 40.909 0.00 0.00 0.00 5.68
3983 4253 4.508124 GGTAGTGATCTAACTCAAATGGCG 59.492 45.833 0.00 0.00 31.66 5.69
3984 4254 4.816925 GGGTAGTGATCTAACTCAAATGGC 59.183 45.833 0.00 0.00 34.54 4.40
3985 4255 5.817816 GTGGGTAGTGATCTAACTCAAATGG 59.182 44.000 0.00 0.00 34.54 3.16
3986 4256 6.406370 TGTGGGTAGTGATCTAACTCAAATG 58.594 40.000 0.00 0.00 34.54 2.32
3987 4257 6.620877 TGTGGGTAGTGATCTAACTCAAAT 57.379 37.500 0.00 0.00 34.54 2.32
3988 4258 6.406370 CATGTGGGTAGTGATCTAACTCAAA 58.594 40.000 0.00 0.00 34.54 2.69
3989 4259 5.626809 GCATGTGGGTAGTGATCTAACTCAA 60.627 44.000 0.00 0.00 34.54 3.02
3990 4260 4.141937 GCATGTGGGTAGTGATCTAACTCA 60.142 45.833 0.00 0.00 34.54 3.41
3991 4261 4.372656 GCATGTGGGTAGTGATCTAACTC 58.627 47.826 0.00 0.00 34.54 3.01
3992 4262 3.134804 GGCATGTGGGTAGTGATCTAACT 59.865 47.826 0.00 0.00 34.54 2.24
3993 4263 3.467803 GGCATGTGGGTAGTGATCTAAC 58.532 50.000 0.00 0.00 33.43 2.34
3994 4264 2.438021 GGGCATGTGGGTAGTGATCTAA 59.562 50.000 0.00 0.00 0.00 2.10
3995 4265 2.047061 GGGCATGTGGGTAGTGATCTA 58.953 52.381 0.00 0.00 0.00 1.98
3996 4266 0.839946 GGGCATGTGGGTAGTGATCT 59.160 55.000 0.00 0.00 0.00 2.75
3997 4267 0.546122 TGGGCATGTGGGTAGTGATC 59.454 55.000 0.00 0.00 0.00 2.92
3998 4268 1.143684 GATGGGCATGTGGGTAGTGAT 59.856 52.381 0.00 0.00 0.00 3.06
3999 4269 0.546122 GATGGGCATGTGGGTAGTGA 59.454 55.000 0.00 0.00 0.00 3.41
4000 4270 0.255604 TGATGGGCATGTGGGTAGTG 59.744 55.000 0.00 0.00 0.00 2.74
4001 4271 0.998928 TTGATGGGCATGTGGGTAGT 59.001 50.000 0.00 0.00 0.00 2.73
4002 4272 1.212688 TCTTGATGGGCATGTGGGTAG 59.787 52.381 0.00 0.00 0.00 3.18
4003 4273 1.294041 TCTTGATGGGCATGTGGGTA 58.706 50.000 0.00 0.00 0.00 3.69
4004 4274 0.632835 ATCTTGATGGGCATGTGGGT 59.367 50.000 0.00 0.00 0.00 4.51
4005 4275 2.662535 TATCTTGATGGGCATGTGGG 57.337 50.000 0.00 0.00 0.00 4.61
4006 4276 5.540400 AAAATATCTTGATGGGCATGTGG 57.460 39.130 0.00 0.00 0.00 4.17
4007 4277 7.650504 CAGTAAAAATATCTTGATGGGCATGTG 59.349 37.037 0.00 0.00 0.00 3.21
4008 4278 7.342799 ACAGTAAAAATATCTTGATGGGCATGT 59.657 33.333 0.00 0.00 0.00 3.21
4009 4279 7.719483 ACAGTAAAAATATCTTGATGGGCATG 58.281 34.615 0.00 0.00 0.00 4.06
4010 4280 7.902920 ACAGTAAAAATATCTTGATGGGCAT 57.097 32.000 0.00 0.00 0.00 4.40
4011 4281 7.831690 TGTACAGTAAAAATATCTTGATGGGCA 59.168 33.333 0.00 0.00 0.00 5.36
4012 4282 8.220755 TGTACAGTAAAAATATCTTGATGGGC 57.779 34.615 0.00 0.00 0.00 5.36
4021 4291 9.503427 GCCAAGATGTTGTACAGTAAAAATATC 57.497 33.333 1.49 6.14 30.95 1.63
4022 4292 8.466798 GGCCAAGATGTTGTACAGTAAAAATAT 58.533 33.333 0.00 0.00 30.95 1.28
4023 4293 7.448777 TGGCCAAGATGTTGTACAGTAAAAATA 59.551 33.333 0.61 0.00 30.95 1.40
4024 4294 6.266558 TGGCCAAGATGTTGTACAGTAAAAAT 59.733 34.615 0.61 0.00 30.95 1.82
4025 4295 5.594725 TGGCCAAGATGTTGTACAGTAAAAA 59.405 36.000 0.61 0.00 30.95 1.94
4026 4296 5.133941 TGGCCAAGATGTTGTACAGTAAAA 58.866 37.500 0.61 0.00 30.95 1.52
4027 4297 4.720046 TGGCCAAGATGTTGTACAGTAAA 58.280 39.130 0.61 0.00 30.95 2.01
4028 4298 4.359434 TGGCCAAGATGTTGTACAGTAA 57.641 40.909 0.61 0.00 30.95 2.24
4062 4334 1.899142 GCAAACCCAAATGGCTCCTAA 59.101 47.619 0.00 0.00 37.83 2.69
4064 4336 0.471591 TGCAAACCCAAATGGCTCCT 60.472 50.000 0.00 0.00 37.83 3.69
4066 4338 0.320683 GGTGCAAACCCAAATGGCTC 60.321 55.000 0.00 0.00 37.83 4.70
4067 4339 1.754107 GGTGCAAACCCAAATGGCT 59.246 52.632 0.00 0.00 37.83 4.75
4070 4342 0.599728 CACCGGTGCAAACCCAAATG 60.600 55.000 24.02 0.00 0.00 2.32
4086 4358 0.451783 CTACCCGAATGCTTTGCACC 59.548 55.000 0.00 0.00 43.04 5.01
4192 4469 2.114616 TGTTTGAAACAGGGGCAACAT 58.885 42.857 6.66 0.00 36.25 2.71
4194 4471 2.682155 TTGTTTGAAACAGGGGCAAC 57.318 45.000 10.91 0.00 43.27 4.17
4251 4528 7.046292 ACCTTTTATGAACCAACAACTAACC 57.954 36.000 0.00 0.00 0.00 2.85
4297 4574 2.441001 CAAAGACAGGGCCTCCAGATAT 59.559 50.000 0.95 0.00 34.83 1.63
4318 4595 1.276622 TAAGTCTGAGGGAGCCAACC 58.723 55.000 0.00 0.00 0.00 3.77
4321 4598 3.039011 GGTTATAAGTCTGAGGGAGCCA 58.961 50.000 0.00 0.00 0.00 4.75
4323 4600 4.443598 CCAAGGTTATAAGTCTGAGGGAGC 60.444 50.000 0.00 0.00 0.00 4.70
4324 4601 4.101741 CCCAAGGTTATAAGTCTGAGGGAG 59.898 50.000 14.87 0.00 34.49 4.30
4325 4602 4.037927 CCCAAGGTTATAAGTCTGAGGGA 58.962 47.826 14.87 0.00 34.49 4.20
4393 4670 2.812011 GTGAGTGTTGTTCCCACCATAC 59.188 50.000 0.00 0.00 33.20 2.39
4407 4684 7.736893 ACATCTTAGAAGGTTAAAGTGAGTGT 58.263 34.615 0.00 0.00 0.00 3.55
4417 4695 7.044181 CAGCATCAGAACATCTTAGAAGGTTA 58.956 38.462 3.26 0.00 0.00 2.85
4434 4712 3.921677 ACCAGAAAATTTGCAGCATCAG 58.078 40.909 0.00 0.00 0.00 2.90
4450 4728 6.403866 AATACAATGCTGTTTGAAACCAGA 57.596 33.333 5.50 0.00 36.96 3.86
4518 4797 8.943909 AGTATATAAGGTCACTTACAAAGCAC 57.056 34.615 0.00 0.00 41.68 4.40
4736 5015 8.748380 AAACTTTCTGTTAAGCAATTATGAGC 57.252 30.769 0.00 0.00 38.03 4.26
4796 5075 6.095440 GGTGTAAGTAATCCATGAAATGCACT 59.905 38.462 0.00 0.00 44.97 4.40
4797 5076 6.095440 AGGTGTAAGTAATCCATGAAATGCAC 59.905 38.462 0.00 0.00 44.97 4.57
4798 5077 6.095300 CAGGTGTAAGTAATCCATGAAATGCA 59.905 38.462 0.00 0.00 44.97 3.96
4799 5078 6.318648 TCAGGTGTAAGTAATCCATGAAATGC 59.681 38.462 0.00 0.00 44.97 3.56
4800 5079 7.864108 TCAGGTGTAAGTAATCCATGAAATG 57.136 36.000 0.00 0.00 46.21 2.32
4801 5080 9.479549 AAATCAGGTGTAAGTAATCCATGAAAT 57.520 29.630 0.00 0.00 0.00 2.17
4802 5081 8.877864 AAATCAGGTGTAAGTAATCCATGAAA 57.122 30.769 0.00 0.00 0.00 2.69
4803 5082 8.877864 AAAATCAGGTGTAAGTAATCCATGAA 57.122 30.769 0.00 0.00 0.00 2.57
5045 5328 4.191544 CACACCCATAGGTCACAACTATG 58.808 47.826 2.06 2.06 46.45 2.23
5048 5331 1.271379 GCACACCCATAGGTCACAACT 60.271 52.381 0.00 0.00 46.45 3.16
5124 5454 9.997482 TTTCAAAGACTATAACAAACACTTCAC 57.003 29.630 0.00 0.00 0.00 3.18
5161 5569 3.678289 TCTTCTGGTTGTGGATGTGATG 58.322 45.455 0.00 0.00 0.00 3.07
5241 5649 6.458232 TTGTGGCATTAACAGTTTAACACT 57.542 33.333 0.00 0.00 35.35 3.55
5254 5662 4.678574 GCAGCATCTCATTTTGTGGCATTA 60.679 41.667 0.00 0.00 0.00 1.90
5353 6248 6.518706 GCAAACCCCATCATCAATATATTGCA 60.519 38.462 18.89 9.61 38.42 4.08
5409 6334 6.307318 CACTTTATTTCTGATGCTGCAAACTC 59.693 38.462 6.36 0.00 0.00 3.01
5411 6336 6.088616 GTCACTTTATTTCTGATGCTGCAAAC 59.911 38.462 6.36 4.78 0.00 2.93
5438 6363 8.379457 ACCACAAGTGAGTAGAATAAGTTTTC 57.621 34.615 0.94 0.00 0.00 2.29
5451 6376 2.418368 TTCAGCAACCACAAGTGAGT 57.582 45.000 0.94 0.00 0.00 3.41
5468 6499 3.673809 CGATAACCCGTAGCTTAGCATTC 59.326 47.826 7.07 0.00 0.00 2.67
5499 6530 2.418083 CCTTGGGCTGGAAATCCGC 61.418 63.158 7.47 7.47 39.43 5.54
5823 6914 7.815641 TGCGCATAATACTGCATATTGTTATT 58.184 30.769 5.66 0.00 42.40 1.40
5870 6961 5.206587 ACCAGGACGGATGTAGTAGTTATT 58.793 41.667 0.00 0.00 38.63 1.40
5874 6965 2.822707 ACCAGGACGGATGTAGTAGT 57.177 50.000 0.00 0.00 38.63 2.73
5875 6966 4.142790 ACATACCAGGACGGATGTAGTAG 58.857 47.826 0.00 0.00 35.21 2.57
5876 6967 4.174704 ACATACCAGGACGGATGTAGTA 57.825 45.455 0.00 0.00 35.21 1.82
5877 6968 3.028094 ACATACCAGGACGGATGTAGT 57.972 47.619 0.00 0.00 35.21 2.73
5878 6969 3.383505 TCAACATACCAGGACGGATGTAG 59.616 47.826 0.00 0.00 35.64 2.74
5879 6970 3.367321 TCAACATACCAGGACGGATGTA 58.633 45.455 0.00 0.00 35.64 2.29
5880 6971 2.184533 TCAACATACCAGGACGGATGT 58.815 47.619 0.00 0.00 37.21 3.06
5881 6972 2.979814 TCAACATACCAGGACGGATG 57.020 50.000 0.00 0.00 38.63 3.51
5882 6973 3.992943 TTTCAACATACCAGGACGGAT 57.007 42.857 0.00 0.00 38.63 4.18
5883 6974 3.992943 ATTTCAACATACCAGGACGGA 57.007 42.857 0.00 0.00 38.63 4.69
5884 6975 4.509616 TGTATTTCAACATACCAGGACGG 58.490 43.478 0.00 0.00 42.50 4.79
5885 6976 6.489127 TTTGTATTTCAACATACCAGGACG 57.511 37.500 0.00 0.00 35.61 4.79
5886 6977 7.122055 TGGATTTGTATTTCAACATACCAGGAC 59.878 37.037 0.00 0.00 35.61 3.85
5887 6978 7.178573 TGGATTTGTATTTCAACATACCAGGA 58.821 34.615 0.00 0.00 35.61 3.86
5888 6979 7.403312 TGGATTTGTATTTCAACATACCAGG 57.597 36.000 0.00 0.00 35.61 4.45
5889 6980 7.484641 CGTTGGATTTGTATTTCAACATACCAG 59.515 37.037 0.00 0.00 37.98 4.00
5890 6981 7.175119 TCGTTGGATTTGTATTTCAACATACCA 59.825 33.333 0.00 0.00 37.98 3.25
5891 6982 7.531716 TCGTTGGATTTGTATTTCAACATACC 58.468 34.615 0.00 0.00 37.98 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.