Multiple sequence alignment - TraesCS7D01G367800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G367800 chr7D 100.000 2722 0 0 1 2722 476141156 476138435 0.000000e+00 5027.0
1 TraesCS7D01G367800 chr7D 100.000 428 0 0 3046 3473 476138111 476137684 0.000000e+00 791.0
2 TraesCS7D01G367800 chr7D 90.278 72 5 2 1 70 184584888 184584959 3.690000e-15 93.5
3 TraesCS7D01G367800 chr7D 94.737 38 2 0 3046 3083 235797065 235797102 3.740000e-05 60.2
4 TraesCS7D01G367800 chr7B 92.402 2290 90 41 327 2584 500255630 500253393 0.000000e+00 3188.0
5 TraesCS7D01G367800 chr7B 92.857 70 4 1 2604 2672 500251175 500251106 2.210000e-17 100.0
6 TraesCS7D01G367800 chr7B 92.188 64 5 0 2657 2720 500251096 500251033 1.330000e-14 91.6
7 TraesCS7D01G367800 chr7B 88.889 72 6 2 1 70 154180346 154180417 1.720000e-13 87.9
8 TraesCS7D01G367800 chr7A 88.246 1608 107 22 492 2035 519557993 519559582 0.000000e+00 1847.0
9 TraesCS7D01G367800 chr7A 91.121 642 44 4 2036 2671 519559623 519560257 0.000000e+00 857.0
10 TraesCS7D01G367800 chr7A 92.958 71 4 1 1 70 38791029 38791099 6.130000e-18 102.0
11 TraesCS7D01G367800 chr7A 94.737 38 2 0 3046 3083 619637769 619637806 3.740000e-05 60.2
12 TraesCS7D01G367800 chr6B 83.665 251 34 7 1 249 331054308 331054063 2.700000e-56 230.0
13 TraesCS7D01G367800 chr3A 94.286 70 3 1 1 69 31683234 31683165 4.740000e-19 106.0
14 TraesCS7D01G367800 chr4D 92.424 66 4 1 1 65 322677569 322677634 3.690000e-15 93.5
15 TraesCS7D01G367800 chr4D 94.872 39 2 0 3046 3084 29168742 29168704 1.040000e-05 62.1
16 TraesCS7D01G367800 chr4B 92.424 66 4 1 1 65 89083370 89083435 3.690000e-15 93.5
17 TraesCS7D01G367800 chr4A 92.424 66 4 1 1 65 583966036 583966101 3.690000e-15 93.5
18 TraesCS7D01G367800 chr1A 92.424 66 4 1 1 65 260784397 260784462 3.690000e-15 93.5
19 TraesCS7D01G367800 chr1A 88.235 51 3 3 200 248 25571352 25571303 1.350000e-04 58.4
20 TraesCS7D01G367800 chr3B 81.250 96 14 3 3369 3464 486619527 486619618 1.340000e-09 75.0
21 TraesCS7D01G367800 chr3B 93.750 48 3 0 202 249 462055286 462055333 4.810000e-09 73.1
22 TraesCS7D01G367800 chr3B 94.872 39 2 0 3046 3084 21596296 21596258 1.040000e-05 62.1
23 TraesCS7D01G367800 chr6A 100.000 38 0 0 212 249 315825944 315825907 1.730000e-08 71.3
24 TraesCS7D01G367800 chr6A 100.000 33 0 0 212 244 453155659 453155627 1.040000e-05 62.1
25 TraesCS7D01G367800 chr6A 92.308 39 3 0 3046 3084 6574446 6574484 4.840000e-04 56.5
26 TraesCS7D01G367800 chr5B 94.872 39 2 0 3046 3084 449135822 449135784 1.040000e-05 62.1
27 TraesCS7D01G367800 chr2B 94.872 39 2 0 3046 3084 412750086 412750124 1.040000e-05 62.1
28 TraesCS7D01G367800 chr2B 94.872 39 2 0 3046 3084 478845168 478845206 1.040000e-05 62.1
29 TraesCS7D01G367800 chr1B 94.595 37 2 0 3046 3082 41534278 41534314 1.350000e-04 58.4
30 TraesCS7D01G367800 chr1D 96.774 31 1 0 3203 3233 465995830 465995800 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G367800 chr7D 476137684 476141156 3472 True 2909.000000 5027 100.000000 1 3473 2 chr7D.!!$R1 3472
1 TraesCS7D01G367800 chr7B 500251033 500255630 4597 True 1126.533333 3188 92.482333 327 2720 3 chr7B.!!$R1 2393
2 TraesCS7D01G367800 chr7A 519557993 519560257 2264 False 1352.000000 1847 89.683500 492 2671 2 chr7A.!!$F3 2179

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.039256 GTTGCAATGCACGGACATGT 60.039 50.0 7.72 0.0 38.71 3.21 F
891 907 0.169009 GAGCTAGCAAAACAAGCCGG 59.831 55.0 18.83 0.0 36.92 6.13 F
2310 2431 0.738412 GGTACACATGTTCGGACCGG 60.738 60.0 15.25 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1638 0.035630 ATCTGCAGGTTGCTCACTCC 60.036 55.000 15.13 0.0 45.31 3.85 R
2349 2470 1.275010 TCACACCATACACTCATGCGT 59.725 47.619 0.00 0.0 0.00 5.24 R
3337 5687 0.325933 CACAGATGGGAGAAGCCACA 59.674 55.000 0.00 0.0 38.95 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.827177 TTGGAAAGTATTTATATGTCTAGGCG 57.173 34.615 0.00 0.00 39.27 5.52
37 38 7.959175 TGGAAAGTATTTATATGTCTAGGCGT 58.041 34.615 0.00 0.00 39.27 5.68
38 39 8.426489 TGGAAAGTATTTATATGTCTAGGCGTT 58.574 33.333 0.00 0.00 39.27 4.84
39 40 8.709646 GGAAAGTATTTATATGTCTAGGCGTTG 58.290 37.037 0.00 0.00 39.27 4.10
40 41 8.603242 AAAGTATTTATATGTCTAGGCGTTGG 57.397 34.615 0.00 0.00 35.86 3.77
41 42 6.698380 AGTATTTATATGTCTAGGCGTTGGG 58.302 40.000 0.00 0.00 0.00 4.12
42 43 5.818678 ATTTATATGTCTAGGCGTTGGGA 57.181 39.130 0.00 0.00 0.00 4.37
43 44 4.866508 TTATATGTCTAGGCGTTGGGAG 57.133 45.455 0.00 0.00 0.00 4.30
44 45 2.154567 TATGTCTAGGCGTTGGGAGT 57.845 50.000 0.00 0.00 0.00 3.85
45 46 2.154567 ATGTCTAGGCGTTGGGAGTA 57.845 50.000 0.00 0.00 0.00 2.59
46 47 1.471119 TGTCTAGGCGTTGGGAGTAG 58.529 55.000 0.00 0.00 0.00 2.57
47 48 1.272313 TGTCTAGGCGTTGGGAGTAGT 60.272 52.381 0.00 0.00 0.00 2.73
48 49 1.823610 GTCTAGGCGTTGGGAGTAGTT 59.176 52.381 0.00 0.00 0.00 2.24
49 50 2.097825 TCTAGGCGTTGGGAGTAGTTC 58.902 52.381 0.00 0.00 0.00 3.01
50 51 0.813184 TAGGCGTTGGGAGTAGTTCG 59.187 55.000 0.00 0.00 0.00 3.95
51 52 1.183676 AGGCGTTGGGAGTAGTTCGT 61.184 55.000 0.00 0.00 0.00 3.85
52 53 1.012486 GGCGTTGGGAGTAGTTCGTG 61.012 60.000 0.00 0.00 0.00 4.35
53 54 1.012486 GCGTTGGGAGTAGTTCGTGG 61.012 60.000 0.00 0.00 0.00 4.94
54 55 0.316204 CGTTGGGAGTAGTTCGTGGT 59.684 55.000 0.00 0.00 0.00 4.16
55 56 1.269936 CGTTGGGAGTAGTTCGTGGTT 60.270 52.381 0.00 0.00 0.00 3.67
56 57 2.140717 GTTGGGAGTAGTTCGTGGTTG 58.859 52.381 0.00 0.00 0.00 3.77
57 58 1.707106 TGGGAGTAGTTCGTGGTTGA 58.293 50.000 0.00 0.00 0.00 3.18
58 59 1.342174 TGGGAGTAGTTCGTGGTTGAC 59.658 52.381 0.00 0.00 0.00 3.18
72 73 5.431650 GTGGTTGACGAGATTAGTTTACG 57.568 43.478 0.00 0.00 0.00 3.18
73 74 4.919754 GTGGTTGACGAGATTAGTTTACGT 59.080 41.667 0.00 0.00 39.82 3.57
74 75 4.919168 TGGTTGACGAGATTAGTTTACGTG 59.081 41.667 0.00 0.00 37.32 4.49
75 76 4.325472 GGTTGACGAGATTAGTTTACGTGG 59.675 45.833 0.00 0.00 37.32 4.94
76 77 5.156355 GTTGACGAGATTAGTTTACGTGGA 58.844 41.667 0.00 0.00 37.32 4.02
77 78 4.726416 TGACGAGATTAGTTTACGTGGAC 58.274 43.478 0.00 0.00 37.32 4.02
78 79 4.216042 TGACGAGATTAGTTTACGTGGACA 59.784 41.667 0.00 0.00 37.32 4.02
79 80 4.479619 ACGAGATTAGTTTACGTGGACAC 58.520 43.478 0.00 0.00 35.91 3.67
80 81 4.217118 ACGAGATTAGTTTACGTGGACACT 59.783 41.667 0.00 0.00 35.91 3.55
81 82 4.557690 CGAGATTAGTTTACGTGGACACTG 59.442 45.833 0.00 0.00 0.00 3.66
82 83 4.243270 AGATTAGTTTACGTGGACACTGC 58.757 43.478 0.00 0.00 0.00 4.40
83 84 2.054687 TAGTTTACGTGGACACTGCG 57.945 50.000 0.00 0.00 0.00 5.18
84 85 0.599204 AGTTTACGTGGACACTGCGG 60.599 55.000 0.00 0.00 0.00 5.69
85 86 0.877213 GTTTACGTGGACACTGCGGT 60.877 55.000 0.00 0.00 0.00 5.68
86 87 0.598158 TTTACGTGGACACTGCGGTC 60.598 55.000 0.00 0.00 37.06 4.79
87 88 1.736365 TTACGTGGACACTGCGGTCA 61.736 55.000 0.00 0.00 39.59 4.02
88 89 1.529152 TACGTGGACACTGCGGTCAT 61.529 55.000 0.00 0.00 39.59 3.06
89 90 2.094659 CGTGGACACTGCGGTCATC 61.095 63.158 0.00 0.00 39.59 2.92
90 91 1.005037 GTGGACACTGCGGTCATCA 60.005 57.895 0.00 0.00 39.59 3.07
91 92 0.602638 GTGGACACTGCGGTCATCAA 60.603 55.000 0.00 0.00 39.59 2.57
92 93 0.602638 TGGACACTGCGGTCATCAAC 60.603 55.000 0.00 0.00 39.59 3.18
93 94 0.602638 GGACACTGCGGTCATCAACA 60.603 55.000 0.00 0.00 39.59 3.33
94 95 0.792640 GACACTGCGGTCATCAACAG 59.207 55.000 0.00 0.00 37.73 3.16
98 99 3.084579 GCGGTCATCAACAGCGAG 58.915 61.111 0.00 0.00 39.29 5.03
99 100 2.456119 GCGGTCATCAACAGCGAGG 61.456 63.158 0.00 0.00 39.29 4.63
100 101 1.811266 CGGTCATCAACAGCGAGGG 60.811 63.158 0.00 0.00 36.89 4.30
101 102 2.109126 GGTCATCAACAGCGAGGGC 61.109 63.158 0.00 0.00 40.37 5.19
102 103 2.125552 TCATCAACAGCGAGGGCG 60.126 61.111 0.00 0.00 46.35 6.13
103 104 2.125552 CATCAACAGCGAGGGCGA 60.126 61.111 0.00 0.00 46.35 5.54
104 105 2.169789 CATCAACAGCGAGGGCGAG 61.170 63.158 0.00 0.00 46.35 5.03
105 106 2.351244 ATCAACAGCGAGGGCGAGA 61.351 57.895 0.00 0.00 46.35 4.04
106 107 1.888436 ATCAACAGCGAGGGCGAGAA 61.888 55.000 0.00 0.00 46.35 2.87
107 108 1.667830 CAACAGCGAGGGCGAGAAA 60.668 57.895 0.00 0.00 46.35 2.52
108 109 1.070786 AACAGCGAGGGCGAGAAAA 59.929 52.632 0.00 0.00 46.35 2.29
109 110 0.534203 AACAGCGAGGGCGAGAAAAA 60.534 50.000 0.00 0.00 46.35 1.94
143 144 3.002371 TGGCGGGCCATCATGTTA 58.998 55.556 8.62 0.00 41.89 2.41
144 145 1.304617 TGGCGGGCCATCATGTTAA 59.695 52.632 8.62 0.00 41.89 2.01
145 146 0.323816 TGGCGGGCCATCATGTTAAA 60.324 50.000 8.62 0.00 41.89 1.52
146 147 0.820871 GGCGGGCCATCATGTTAAAA 59.179 50.000 4.39 0.00 35.81 1.52
147 148 1.412343 GGCGGGCCATCATGTTAAAAT 59.588 47.619 4.39 0.00 35.81 1.82
148 149 2.625790 GGCGGGCCATCATGTTAAAATA 59.374 45.455 4.39 0.00 35.81 1.40
149 150 3.068873 GGCGGGCCATCATGTTAAAATAA 59.931 43.478 4.39 0.00 35.81 1.40
150 151 4.442192 GGCGGGCCATCATGTTAAAATAAA 60.442 41.667 4.39 0.00 35.81 1.40
151 152 4.744631 GCGGGCCATCATGTTAAAATAAAG 59.255 41.667 4.39 0.00 0.00 1.85
152 153 5.288804 CGGGCCATCATGTTAAAATAAAGG 58.711 41.667 4.39 0.00 0.00 3.11
153 154 5.068460 CGGGCCATCATGTTAAAATAAAGGA 59.932 40.000 4.39 0.00 0.00 3.36
154 155 6.280643 GGGCCATCATGTTAAAATAAAGGAC 58.719 40.000 4.39 0.00 0.00 3.85
155 156 5.977129 GGCCATCATGTTAAAATAAAGGACG 59.023 40.000 0.00 0.00 0.00 4.79
156 157 5.977129 GCCATCATGTTAAAATAAAGGACGG 59.023 40.000 0.00 0.00 0.00 4.79
157 158 6.405397 GCCATCATGTTAAAATAAAGGACGGT 60.405 38.462 0.00 0.00 0.00 4.83
158 159 7.193595 CCATCATGTTAAAATAAAGGACGGTC 58.806 38.462 0.00 0.00 0.00 4.79
159 160 7.148154 CCATCATGTTAAAATAAAGGACGGTCA 60.148 37.037 10.76 0.00 0.00 4.02
160 161 7.372451 TCATGTTAAAATAAAGGACGGTCAG 57.628 36.000 10.76 0.00 0.00 3.51
161 162 7.162761 TCATGTTAAAATAAAGGACGGTCAGA 58.837 34.615 10.76 0.00 0.00 3.27
162 163 7.827236 TCATGTTAAAATAAAGGACGGTCAGAT 59.173 33.333 10.76 0.00 0.00 2.90
163 164 7.372451 TGTTAAAATAAAGGACGGTCAGATG 57.628 36.000 10.76 0.00 0.00 2.90
164 165 6.938030 TGTTAAAATAAAGGACGGTCAGATGT 59.062 34.615 10.76 0.00 0.00 3.06
165 166 7.118680 TGTTAAAATAAAGGACGGTCAGATGTC 59.881 37.037 10.76 0.00 0.00 3.06
166 167 2.933495 TAAAGGACGGTCAGATGTCG 57.067 50.000 10.76 0.00 35.95 4.35
167 168 0.246635 AAAGGACGGTCAGATGTCGG 59.753 55.000 10.76 0.00 35.95 4.79
168 169 2.202756 GGACGGTCAGATGTCGGC 60.203 66.667 10.76 0.00 35.95 5.54
169 170 2.579787 GACGGTCAGATGTCGGCG 60.580 66.667 0.00 0.00 0.00 6.46
170 171 3.338126 GACGGTCAGATGTCGGCGT 62.338 63.158 6.85 0.00 0.00 5.68
171 172 1.985447 GACGGTCAGATGTCGGCGTA 61.985 60.000 6.85 0.00 0.00 4.42
172 173 1.359117 CGGTCAGATGTCGGCGTAT 59.641 57.895 6.85 2.56 0.00 3.06
173 174 0.589708 CGGTCAGATGTCGGCGTATA 59.410 55.000 6.85 0.00 0.00 1.47
174 175 1.399855 CGGTCAGATGTCGGCGTATAG 60.400 57.143 6.85 0.20 0.00 1.31
175 176 1.878088 GGTCAGATGTCGGCGTATAGA 59.122 52.381 6.85 2.55 0.00 1.98
176 177 2.095668 GGTCAGATGTCGGCGTATAGAG 60.096 54.545 6.85 0.00 0.00 2.43
177 178 1.535896 TCAGATGTCGGCGTATAGAGC 59.464 52.381 6.85 0.00 0.00 4.09
192 193 8.983307 GCGTATAGAGCCATACTTATTTAGTT 57.017 34.615 0.00 0.00 38.33 2.24
219 220 8.889717 AGAACATAATATTGTTAACTCCCGTTG 58.110 33.333 7.22 0.12 39.85 4.10
220 221 7.023197 ACATAATATTGTTAACTCCCGTTGC 57.977 36.000 7.22 0.00 34.59 4.17
221 222 6.600032 ACATAATATTGTTAACTCCCGTTGCA 59.400 34.615 7.22 0.00 34.59 4.08
222 223 5.968528 AATATTGTTAACTCCCGTTGCAA 57.031 34.783 7.22 0.00 35.46 4.08
223 224 6.524101 AATATTGTTAACTCCCGTTGCAAT 57.476 33.333 0.59 11.49 40.15 3.56
224 225 3.634568 TTGTTAACTCCCGTTGCAATG 57.365 42.857 11.90 11.90 34.59 2.82
225 226 1.268352 TGTTAACTCCCGTTGCAATGC 59.732 47.619 13.42 0.00 34.59 3.56
226 227 1.268352 GTTAACTCCCGTTGCAATGCA 59.732 47.619 13.42 2.72 36.47 3.96
227 228 0.878416 TAACTCCCGTTGCAATGCAC 59.122 50.000 7.72 2.39 38.71 4.57
228 229 2.128853 AACTCCCGTTGCAATGCACG 62.129 55.000 7.72 14.71 38.71 5.34
229 230 3.326889 CTCCCGTTGCAATGCACGG 62.327 63.158 28.95 28.95 45.37 4.94
232 233 2.636462 CGTTGCAATGCACGGACA 59.364 55.556 7.72 0.00 38.71 4.02
233 234 1.209898 CGTTGCAATGCACGGACAT 59.790 52.632 7.72 0.00 38.71 3.06
234 235 1.066656 CGTTGCAATGCACGGACATG 61.067 55.000 7.72 0.00 38.71 3.21
235 236 0.039256 GTTGCAATGCACGGACATGT 60.039 50.000 7.72 0.00 38.71 3.21
236 237 0.672889 TTGCAATGCACGGACATGTT 59.327 45.000 7.72 0.00 38.71 2.71
237 238 0.672889 TGCAATGCACGGACATGTTT 59.327 45.000 2.72 0.00 31.71 2.83
238 239 1.062258 GCAATGCACGGACATGTTTG 58.938 50.000 0.00 0.00 0.00 2.93
239 240 1.062258 CAATGCACGGACATGTTTGC 58.938 50.000 16.91 16.91 35.45 3.68
240 241 0.961019 AATGCACGGACATGTTTGCT 59.039 45.000 21.61 10.06 35.91 3.91
241 242 1.819928 ATGCACGGACATGTTTGCTA 58.180 45.000 21.61 12.67 35.91 3.49
242 243 1.155889 TGCACGGACATGTTTGCTAG 58.844 50.000 21.61 5.08 35.91 3.42
243 244 1.156736 GCACGGACATGTTTGCTAGT 58.843 50.000 16.62 2.97 32.00 2.57
244 245 2.289133 TGCACGGACATGTTTGCTAGTA 60.289 45.455 21.61 5.92 35.91 1.82
245 246 2.936498 GCACGGACATGTTTGCTAGTAT 59.064 45.455 16.62 0.00 32.00 2.12
246 247 4.116961 GCACGGACATGTTTGCTAGTATA 58.883 43.478 16.62 0.00 32.00 1.47
247 248 4.750098 GCACGGACATGTTTGCTAGTATAT 59.250 41.667 16.62 0.00 32.00 0.86
248 249 5.924254 GCACGGACATGTTTGCTAGTATATA 59.076 40.000 16.62 0.00 32.00 0.86
249 250 6.128902 GCACGGACATGTTTGCTAGTATATAC 60.129 42.308 16.62 4.60 32.00 1.47
250 251 6.087687 CACGGACATGTTTGCTAGTATATACG 59.912 42.308 0.00 0.00 0.00 3.06
251 252 6.016860 ACGGACATGTTTGCTAGTATATACGA 60.017 38.462 0.00 1.37 0.00 3.43
252 253 6.523546 CGGACATGTTTGCTAGTATATACGAG 59.476 42.308 16.28 16.28 32.92 4.18
253 254 7.572539 CGGACATGTTTGCTAGTATATACGAGA 60.573 40.741 22.72 8.50 31.63 4.04
254 255 8.080417 GGACATGTTTGCTAGTATATACGAGAA 58.920 37.037 22.72 12.51 31.63 2.87
255 256 9.627395 GACATGTTTGCTAGTATATACGAGAAT 57.373 33.333 22.72 7.92 31.63 2.40
270 271 7.948278 ATACGAGAATAAAGTCAATAGGCAC 57.052 36.000 0.00 0.00 0.00 5.01
271 272 5.116882 ACGAGAATAAAGTCAATAGGCACC 58.883 41.667 0.00 0.00 0.00 5.01
272 273 5.116180 CGAGAATAAAGTCAATAGGCACCA 58.884 41.667 0.00 0.00 0.00 4.17
273 274 5.760253 CGAGAATAAAGTCAATAGGCACCAT 59.240 40.000 0.00 0.00 0.00 3.55
274 275 6.929049 CGAGAATAAAGTCAATAGGCACCATA 59.071 38.462 0.00 0.00 0.00 2.74
275 276 7.604164 CGAGAATAAAGTCAATAGGCACCATAT 59.396 37.037 0.00 0.00 0.00 1.78
276 277 8.854614 AGAATAAAGTCAATAGGCACCATATC 57.145 34.615 0.00 0.00 0.00 1.63
277 278 8.439971 AGAATAAAGTCAATAGGCACCATATCA 58.560 33.333 0.00 0.00 0.00 2.15
278 279 7.986085 ATAAAGTCAATAGGCACCATATCAC 57.014 36.000 0.00 0.00 0.00 3.06
279 280 5.636903 AAGTCAATAGGCACCATATCACT 57.363 39.130 0.00 0.00 0.00 3.41
280 281 5.636903 AGTCAATAGGCACCATATCACTT 57.363 39.130 0.00 0.00 0.00 3.16
281 282 5.615289 AGTCAATAGGCACCATATCACTTC 58.385 41.667 0.00 0.00 0.00 3.01
282 283 5.130975 AGTCAATAGGCACCATATCACTTCA 59.869 40.000 0.00 0.00 0.00 3.02
283 284 5.237344 GTCAATAGGCACCATATCACTTCAC 59.763 44.000 0.00 0.00 0.00 3.18
284 285 2.315925 AGGCACCATATCACTTCACG 57.684 50.000 0.00 0.00 0.00 4.35
285 286 1.134401 AGGCACCATATCACTTCACGG 60.134 52.381 0.00 0.00 0.00 4.94
286 287 1.134521 GGCACCATATCACTTCACGGA 60.135 52.381 0.00 0.00 0.00 4.69
287 288 1.933853 GCACCATATCACTTCACGGAC 59.066 52.381 0.00 0.00 0.00 4.79
288 289 2.550978 CACCATATCACTTCACGGACC 58.449 52.381 0.00 0.00 0.00 4.46
289 290 2.168521 CACCATATCACTTCACGGACCT 59.831 50.000 0.00 0.00 0.00 3.85
290 291 2.838202 ACCATATCACTTCACGGACCTT 59.162 45.455 0.00 0.00 0.00 3.50
291 292 3.198068 CCATATCACTTCACGGACCTTG 58.802 50.000 0.00 0.00 0.00 3.61
292 293 3.118775 CCATATCACTTCACGGACCTTGA 60.119 47.826 0.00 0.00 0.00 3.02
293 294 4.503910 CATATCACTTCACGGACCTTGAA 58.496 43.478 12.47 12.47 0.00 2.69
301 302 5.845391 TTCACGGACCTTGAAGAAAAATT 57.155 34.783 9.26 0.00 0.00 1.82
302 303 5.432885 TCACGGACCTTGAAGAAAAATTC 57.567 39.130 0.00 0.00 0.00 2.17
303 304 4.277423 TCACGGACCTTGAAGAAAAATTCC 59.723 41.667 0.00 0.00 0.00 3.01
304 305 3.572682 ACGGACCTTGAAGAAAAATTCCC 59.427 43.478 0.00 0.00 0.00 3.97
305 306 3.365969 CGGACCTTGAAGAAAAATTCCCG 60.366 47.826 0.00 0.00 0.00 5.14
306 307 3.572682 GGACCTTGAAGAAAAATTCCCGT 59.427 43.478 0.00 0.00 0.00 5.28
307 308 4.546570 GACCTTGAAGAAAAATTCCCGTG 58.453 43.478 0.00 0.00 0.00 4.94
308 309 3.320826 ACCTTGAAGAAAAATTCCCGTGG 59.679 43.478 0.00 0.00 0.00 4.94
309 310 3.306019 CCTTGAAGAAAAATTCCCGTGGG 60.306 47.826 0.00 0.00 0.00 4.61
310 311 2.243810 TGAAGAAAAATTCCCGTGGGG 58.756 47.619 4.81 0.00 46.11 4.96
325 326 3.961414 GGGACAGGGGGACGCAAA 61.961 66.667 0.00 0.00 46.88 3.68
360 361 1.667154 CTTCGTCTGAGATCGGCCCA 61.667 60.000 0.00 0.00 0.00 5.36
361 362 1.043116 TTCGTCTGAGATCGGCCCAT 61.043 55.000 0.00 0.00 0.00 4.00
366 367 0.467384 CTGAGATCGGCCCATGAAGT 59.533 55.000 0.00 0.00 0.00 3.01
369 370 2.705658 TGAGATCGGCCCATGAAGTAAT 59.294 45.455 0.00 0.00 0.00 1.89
377 378 3.632145 GGCCCATGAAGTAATCGACATTT 59.368 43.478 0.00 0.00 0.00 2.32
388 389 7.772332 AGTAATCGACATTTCTGTACCATTC 57.228 36.000 0.00 0.00 35.14 2.67
407 408 1.412710 TCGGCCATTCTATGTCCTCAC 59.587 52.381 2.24 0.00 0.00 3.51
455 456 3.279285 GCTCTGCAGCATCATCGTA 57.721 52.632 9.47 0.00 46.06 3.43
456 457 1.575244 GCTCTGCAGCATCATCGTAA 58.425 50.000 9.47 0.00 46.06 3.18
458 459 2.547211 GCTCTGCAGCATCATCGTAATT 59.453 45.455 9.47 0.00 46.06 1.40
459 460 3.003068 GCTCTGCAGCATCATCGTAATTT 59.997 43.478 9.47 0.00 46.06 1.82
461 462 5.614231 GCTCTGCAGCATCATCGTAATTTAG 60.614 44.000 9.47 0.00 46.06 1.85
462 463 5.600696 TCTGCAGCATCATCGTAATTTAGA 58.399 37.500 9.47 0.00 0.00 2.10
463 464 5.463392 TCTGCAGCATCATCGTAATTTAGAC 59.537 40.000 9.47 0.00 0.00 2.59
464 465 5.115480 TGCAGCATCATCGTAATTTAGACA 58.885 37.500 0.00 0.00 0.00 3.41
466 467 6.260714 TGCAGCATCATCGTAATTTAGACATT 59.739 34.615 0.00 0.00 0.00 2.71
467 468 7.134815 GCAGCATCATCGTAATTTAGACATTT 58.865 34.615 0.00 0.00 0.00 2.32
468 469 7.322222 GCAGCATCATCGTAATTTAGACATTTC 59.678 37.037 0.00 0.00 0.00 2.17
469 470 7.528516 CAGCATCATCGTAATTTAGACATTTCG 59.471 37.037 0.00 0.00 0.00 3.46
470 471 6.792250 GCATCATCGTAATTTAGACATTTCGG 59.208 38.462 0.00 0.00 30.36 4.30
475 476 6.157904 TCGTAATTTAGACATTTCGGTCACA 58.842 36.000 0.00 0.00 40.29 3.58
476 477 6.645827 TCGTAATTTAGACATTTCGGTCACAA 59.354 34.615 0.00 0.00 40.29 3.33
477 478 6.953743 CGTAATTTAGACATTTCGGTCACAAG 59.046 38.462 0.00 0.00 40.29 3.16
478 479 6.877611 AATTTAGACATTTCGGTCACAAGT 57.122 33.333 0.00 0.00 40.29 3.16
479 480 5.666969 TTTAGACATTTCGGTCACAAGTG 57.333 39.130 0.00 0.00 40.29 3.16
480 481 1.873591 AGACATTTCGGTCACAAGTGC 59.126 47.619 0.00 0.00 40.29 4.40
481 482 1.601903 GACATTTCGGTCACAAGTGCA 59.398 47.619 0.00 0.00 37.73 4.57
482 483 2.226437 GACATTTCGGTCACAAGTGCAT 59.774 45.455 0.00 0.00 37.73 3.96
483 484 3.407698 ACATTTCGGTCACAAGTGCATA 58.592 40.909 0.00 0.00 0.00 3.14
484 485 3.188460 ACATTTCGGTCACAAGTGCATAC 59.812 43.478 0.00 0.00 0.00 2.39
485 486 2.535012 TTCGGTCACAAGTGCATACA 57.465 45.000 0.00 0.00 0.00 2.29
486 487 2.535012 TCGGTCACAAGTGCATACAA 57.465 45.000 0.00 0.00 0.00 2.41
487 488 2.839975 TCGGTCACAAGTGCATACAAA 58.160 42.857 0.00 0.00 0.00 2.83
488 489 3.407698 TCGGTCACAAGTGCATACAAAT 58.592 40.909 0.00 0.00 0.00 2.32
489 490 3.818210 TCGGTCACAAGTGCATACAAATT 59.182 39.130 0.00 0.00 0.00 1.82
490 491 4.277174 TCGGTCACAAGTGCATACAAATTT 59.723 37.500 0.00 0.00 0.00 1.82
491 492 5.470437 TCGGTCACAAGTGCATACAAATTTA 59.530 36.000 0.00 0.00 0.00 1.40
492 493 6.150307 TCGGTCACAAGTGCATACAAATTTAT 59.850 34.615 0.00 0.00 0.00 1.40
493 494 6.468956 CGGTCACAAGTGCATACAAATTTATC 59.531 38.462 0.00 0.00 0.00 1.75
494 495 6.751888 GGTCACAAGTGCATACAAATTTATCC 59.248 38.462 0.00 0.00 0.00 2.59
495 496 7.362920 GGTCACAAGTGCATACAAATTTATCCT 60.363 37.037 0.00 0.00 0.00 3.24
496 497 7.485913 GTCACAAGTGCATACAAATTTATCCTG 59.514 37.037 0.00 0.00 0.00 3.86
497 498 6.254157 CACAAGTGCATACAAATTTATCCTGC 59.746 38.462 0.00 0.00 0.00 4.85
580 581 5.345741 ACGTCATGCTTGTAATTTGAAATGC 59.654 36.000 0.00 0.00 0.00 3.56
590 600 9.206870 CTTGTAATTTGAAATGCTTGGTAATGT 57.793 29.630 0.00 0.00 0.00 2.71
598 608 2.161855 TGCTTGGTAATGTTGAGGCAG 58.838 47.619 0.00 0.00 0.00 4.85
638 648 0.179065 ATCGCGTAAACCTAAGGGCC 60.179 55.000 5.77 0.00 35.63 5.80
639 649 1.219935 CGCGTAAACCTAAGGGCCT 59.780 57.895 0.00 0.00 35.63 5.19
640 650 0.461135 CGCGTAAACCTAAGGGCCTA 59.539 55.000 6.41 0.00 35.63 3.93
647 657 0.618981 ACCTAAGGGCCTAAGTGCAC 59.381 55.000 6.41 9.40 35.63 4.57
661 671 1.472480 AGTGCACGCTTTTGTCTTGTT 59.528 42.857 12.01 0.00 0.00 2.83
667 677 2.490115 ACGCTTTTGTCTTGTTTGGTGA 59.510 40.909 0.00 0.00 0.00 4.02
725 738 5.618056 ATGCAGCACCAAATTATCTATCG 57.382 39.130 0.00 0.00 0.00 2.92
744 757 2.107141 CTTCCGCCCTCGATGTCC 59.893 66.667 0.00 0.00 38.10 4.02
758 774 1.070289 GATGTCCGGGGTGAATCTACC 59.930 57.143 0.00 0.00 40.10 3.18
891 907 0.169009 GAGCTAGCAAAACAAGCCGG 59.831 55.000 18.83 0.00 36.92 6.13
916 944 7.888250 TGGTTATAATATGCCACATGACAAA 57.112 32.000 0.00 0.00 0.00 2.83
917 945 7.939782 TGGTTATAATATGCCACATGACAAAG 58.060 34.615 0.00 0.00 0.00 2.77
918 946 7.559533 TGGTTATAATATGCCACATGACAAAGT 59.440 33.333 0.00 0.00 0.00 2.66
944 972 7.896811 TCTCCTTGCTGGTGTATATATAGTTG 58.103 38.462 0.00 0.00 37.07 3.16
984 1012 0.980231 ACTGCCCTCTCCTGTCATCC 60.980 60.000 0.00 0.00 0.00 3.51
1042 1076 1.070134 TCACTTGGAGTGTGTACCAGC 59.930 52.381 7.85 0.00 46.03 4.85
1167 1201 2.350522 GTGTCTGCTGATTACCACCTG 58.649 52.381 0.00 0.00 0.00 4.00
1197 1231 2.358737 GTCTGTGGCTTCCCCGTG 60.359 66.667 0.00 0.00 35.87 4.94
1474 1542 3.771160 GTCGGCCACATCTCCGGT 61.771 66.667 2.24 0.00 45.31 5.28
1684 1752 2.747460 TGCTGCGGCTGATGTTCC 60.747 61.111 20.27 0.00 39.59 3.62
1685 1753 2.747460 GCTGCGGCTGATGTTCCA 60.747 61.111 11.21 0.00 35.22 3.53
1865 1937 1.128724 CGACGAGAGACATGCACGTC 61.129 60.000 4.38 4.38 46.01 4.34
2020 2097 6.614160 ACGCTGTTTGTTGTTTAACTTTACT 58.386 32.000 0.00 0.00 37.68 2.24
2090 2207 0.752658 TGACGGGAGCATCGATGAAT 59.247 50.000 29.20 16.03 34.37 2.57
2138 2255 1.896660 GGCGGGCAAGTTCAAGTCA 60.897 57.895 0.00 0.00 0.00 3.41
2310 2431 0.738412 GGTACACATGTTCGGACCGG 60.738 60.000 15.25 0.00 0.00 5.28
2350 2471 5.859495 AGGAGCAATAATTGGAGCTACTAC 58.141 41.667 9.91 0.00 46.03 2.73
2379 2500 7.941919 TGAGTGTATGGTGTGATTACTATCTC 58.058 38.462 0.00 0.00 0.00 2.75
2396 2519 6.582636 ACTATCTCAAACGATGCATTCCTAA 58.417 36.000 0.00 0.00 0.00 2.69
2447 2570 6.142259 ACTTACAGAGGACGGAGGATATAT 57.858 41.667 0.00 0.00 0.00 0.86
2526 2649 4.154195 GTGATTATTGGCGAGGCGATAATT 59.846 41.667 24.07 13.53 32.38 1.40
2602 4926 8.125978 TGGTTTTAAGATCTTTGCTGATTCAT 57.874 30.769 14.36 0.00 0.00 2.57
2703 5053 5.737290 ACAACTCAAAGAAAAATGTCGAACG 59.263 36.000 0.00 0.00 0.00 3.95
3070 5420 8.747538 TCAGATAGCCGCATATATAGTCTAAA 57.252 34.615 0.00 0.00 0.00 1.85
3071 5421 9.185680 TCAGATAGCCGCATATATAGTCTAAAA 57.814 33.333 0.00 0.00 0.00 1.52
3072 5422 9.973450 CAGATAGCCGCATATATAGTCTAAAAT 57.027 33.333 0.00 0.00 0.00 1.82
3096 5446 6.590234 AGTTTAAATGTGGAAGATTGTCCC 57.410 37.500 0.00 0.00 36.80 4.46
3097 5447 5.480422 AGTTTAAATGTGGAAGATTGTCCCC 59.520 40.000 0.00 0.00 36.80 4.81
3098 5448 3.833559 AAATGTGGAAGATTGTCCCCT 57.166 42.857 0.00 0.00 36.80 4.79
3099 5449 4.946160 AAATGTGGAAGATTGTCCCCTA 57.054 40.909 0.00 0.00 36.80 3.53
3100 5450 4.946160 AATGTGGAAGATTGTCCCCTAA 57.054 40.909 0.00 0.00 36.80 2.69
3101 5451 4.510167 ATGTGGAAGATTGTCCCCTAAG 57.490 45.455 0.00 0.00 36.80 2.18
3102 5452 2.576191 TGTGGAAGATTGTCCCCTAAGG 59.424 50.000 0.00 0.00 36.80 2.69
3103 5453 1.564348 TGGAAGATTGTCCCCTAAGGC 59.436 52.381 0.00 0.00 36.80 4.35
3104 5454 1.133761 GGAAGATTGTCCCCTAAGGCC 60.134 57.143 0.00 0.00 34.51 5.19
3105 5455 0.927029 AAGATTGTCCCCTAAGGCCC 59.073 55.000 0.00 0.00 34.51 5.80
3106 5456 1.148498 GATTGTCCCCTAAGGCCCG 59.852 63.158 0.00 0.00 34.51 6.13
3107 5457 1.307517 ATTGTCCCCTAAGGCCCGA 60.308 57.895 0.00 0.00 34.51 5.14
3108 5458 1.632965 ATTGTCCCCTAAGGCCCGAC 61.633 60.000 0.00 0.00 34.51 4.79
3109 5459 3.477346 GTCCCCTAAGGCCCGACC 61.477 72.222 0.00 0.00 39.61 4.79
3110 5460 4.810184 TCCCCTAAGGCCCGACCC 62.810 72.222 0.00 0.00 40.58 4.46
3123 5473 3.998672 GACCCCGCGTCACCTTCA 61.999 66.667 4.92 0.00 41.54 3.02
3124 5474 4.309950 ACCCCGCGTCACCTTCAC 62.310 66.667 4.92 0.00 0.00 3.18
3125 5475 4.308458 CCCCGCGTCACCTTCACA 62.308 66.667 4.92 0.00 0.00 3.58
3126 5476 2.738521 CCCGCGTCACCTTCACAG 60.739 66.667 4.92 0.00 0.00 3.66
3128 5478 3.414700 CGCGTCACCTTCACAGGC 61.415 66.667 0.00 0.00 45.56 4.85
3129 5479 3.414700 GCGTCACCTTCACAGGCG 61.415 66.667 0.00 0.00 45.56 5.52
3130 5480 2.338620 CGTCACCTTCACAGGCGA 59.661 61.111 0.00 0.00 45.56 5.54
3131 5481 2.022129 CGTCACCTTCACAGGCGAC 61.022 63.158 0.08 0.08 45.56 5.19
3132 5482 3.544772 TCACCTTCACAGGCGACA 58.455 55.556 0.00 0.00 45.56 4.35
3133 5483 1.069090 TCACCTTCACAGGCGACAC 59.931 57.895 0.00 0.00 45.56 3.67
3134 5484 2.029073 ACCTTCACAGGCGACACG 59.971 61.111 0.00 0.00 45.56 4.49
3135 5485 2.338620 CCTTCACAGGCGACACGA 59.661 61.111 0.00 0.00 31.53 4.35
3136 5486 1.734477 CCTTCACAGGCGACACGAG 60.734 63.158 0.00 0.00 31.53 4.18
3137 5487 1.734477 CTTCACAGGCGACACGAGG 60.734 63.158 0.00 0.00 0.00 4.63
3138 5488 3.220999 TTCACAGGCGACACGAGGG 62.221 63.158 0.00 0.00 0.00 4.30
3139 5489 3.680786 CACAGGCGACACGAGGGA 61.681 66.667 0.00 0.00 0.00 4.20
3140 5490 2.915659 ACAGGCGACACGAGGGAA 60.916 61.111 0.00 0.00 0.00 3.97
3141 5491 2.432628 CAGGCGACACGAGGGAAC 60.433 66.667 0.00 0.00 0.00 3.62
3169 5519 4.335647 CCGCCACAGCACCTCCTT 62.336 66.667 0.00 0.00 39.83 3.36
3170 5520 2.743928 CGCCACAGCACCTCCTTC 60.744 66.667 0.00 0.00 39.83 3.46
3171 5521 2.753029 GCCACAGCACCTCCTTCT 59.247 61.111 0.00 0.00 39.53 2.85
3172 5522 1.673665 GCCACAGCACCTCCTTCTG 60.674 63.158 0.00 0.00 39.53 3.02
3173 5523 1.002868 CCACAGCACCTCCTTCTGG 60.003 63.158 0.00 0.00 32.42 3.86
3174 5524 1.673665 CACAGCACCTCCTTCTGGC 60.674 63.158 0.00 0.00 32.42 4.85
3175 5525 2.045536 CAGCACCTCCTTCTGGCC 60.046 66.667 0.00 0.00 0.00 5.36
3176 5526 2.530151 AGCACCTCCTTCTGGCCA 60.530 61.111 4.71 4.71 0.00 5.36
3177 5527 1.927527 AGCACCTCCTTCTGGCCAT 60.928 57.895 5.51 0.00 0.00 4.40
3178 5528 1.452833 GCACCTCCTTCTGGCCATC 60.453 63.158 5.51 0.00 0.00 3.51
3179 5529 1.225704 CACCTCCTTCTGGCCATCC 59.774 63.158 5.51 0.00 0.00 3.51
3180 5530 2.003548 ACCTCCTTCTGGCCATCCC 61.004 63.158 5.51 0.00 0.00 3.85
3181 5531 2.761465 CCTCCTTCTGGCCATCCCC 61.761 68.421 5.51 0.00 0.00 4.81
3182 5532 2.696125 TCCTTCTGGCCATCCCCC 60.696 66.667 5.51 0.00 0.00 5.40
3183 5533 4.195334 CCTTCTGGCCATCCCCCG 62.195 72.222 5.51 0.00 0.00 5.73
3184 5534 4.883354 CTTCTGGCCATCCCCCGC 62.883 72.222 5.51 0.00 0.00 6.13
3187 5537 4.962836 CTGGCCATCCCCCGCATC 62.963 72.222 5.51 0.00 0.00 3.91
3245 5595 3.437795 CGCTCCTGCCTTGCCTTG 61.438 66.667 0.00 0.00 35.36 3.61
3246 5596 3.066814 GCTCCTGCCTTGCCTTGG 61.067 66.667 0.00 0.00 0.00 3.61
3252 5602 4.043200 GCCTTGCCTTGGCGTCAC 62.043 66.667 7.18 0.00 41.03 3.67
3253 5603 2.281761 CCTTGCCTTGGCGTCACT 60.282 61.111 7.18 0.00 0.00 3.41
3254 5604 2.620112 CCTTGCCTTGGCGTCACTG 61.620 63.158 7.18 0.00 0.00 3.66
3255 5605 3.259425 CTTGCCTTGGCGTCACTGC 62.259 63.158 7.18 3.11 0.00 4.40
3264 5614 4.003788 CGTCACTGCGGGGGACTT 62.004 66.667 15.06 0.00 0.00 3.01
3265 5615 2.358737 GTCACTGCGGGGGACTTG 60.359 66.667 11.20 0.00 0.00 3.16
3266 5616 3.636231 TCACTGCGGGGGACTTGG 61.636 66.667 0.00 0.00 0.00 3.61
3291 5641 3.406361 CGCGACGCAAACTGCTCT 61.406 61.111 21.35 0.00 42.25 4.09
3292 5642 2.472049 GCGACGCAAACTGCTCTC 59.528 61.111 16.42 0.00 42.25 3.20
3293 5643 3.016474 GCGACGCAAACTGCTCTCC 62.016 63.158 16.42 0.00 42.25 3.71
3294 5644 2.720758 CGACGCAAACTGCTCTCCG 61.721 63.158 0.00 0.00 42.25 4.63
3295 5645 1.372997 GACGCAAACTGCTCTCCGA 60.373 57.895 0.00 0.00 42.25 4.55
3296 5646 1.618640 GACGCAAACTGCTCTCCGAC 61.619 60.000 0.00 0.00 42.25 4.79
3297 5647 2.720758 CGCAAACTGCTCTCCGACG 61.721 63.158 0.00 0.00 42.25 5.12
3298 5648 2.383527 GCAAACTGCTCTCCGACGG 61.384 63.158 7.84 7.84 40.96 4.79
3299 5649 1.006102 CAAACTGCTCTCCGACGGT 60.006 57.895 14.79 0.00 0.00 4.83
3300 5650 1.006102 AAACTGCTCTCCGACGGTG 60.006 57.895 14.79 12.10 0.00 4.94
3301 5651 1.461091 AAACTGCTCTCCGACGGTGA 61.461 55.000 17.11 17.11 0.00 4.02
3302 5652 2.143594 AACTGCTCTCCGACGGTGAC 62.144 60.000 14.79 11.72 0.00 3.67
3314 5664 2.126031 GGTGACGGCGTCTTCTCC 60.126 66.667 36.17 27.18 33.15 3.71
3322 5672 3.816524 CGTCTTCTCCGGCGCTCT 61.817 66.667 7.64 0.00 0.00 4.09
3323 5673 2.103340 GTCTTCTCCGGCGCTCTC 59.897 66.667 7.64 0.00 0.00 3.20
3324 5674 3.141488 TCTTCTCCGGCGCTCTCC 61.141 66.667 7.64 0.00 0.00 3.71
3325 5675 3.144193 CTTCTCCGGCGCTCTCCT 61.144 66.667 7.64 0.00 0.00 3.69
3326 5676 3.132481 CTTCTCCGGCGCTCTCCTC 62.132 68.421 7.64 0.00 0.00 3.71
3331 5681 4.116328 CGGCGCTCTCCTCGTCAA 62.116 66.667 7.64 0.00 0.00 3.18
3332 5682 2.202676 GGCGCTCTCCTCGTCAAG 60.203 66.667 7.64 0.00 0.00 3.02
3333 5683 2.883253 GCGCTCTCCTCGTCAAGC 60.883 66.667 0.00 0.00 0.00 4.01
3335 5685 2.202676 GCTCTCCTCGTCAAGCGG 60.203 66.667 0.00 0.00 41.72 5.52
3336 5686 2.995872 GCTCTCCTCGTCAAGCGGT 61.996 63.158 0.00 0.00 41.72 5.68
3337 5687 1.587054 CTCTCCTCGTCAAGCGGTT 59.413 57.895 0.00 0.00 41.72 4.44
3338 5688 0.734253 CTCTCCTCGTCAAGCGGTTG 60.734 60.000 21.02 21.02 41.72 3.77
3339 5689 1.006102 CTCCTCGTCAAGCGGTTGT 60.006 57.895 25.18 0.00 41.72 3.32
3340 5690 1.284982 CTCCTCGTCAAGCGGTTGTG 61.285 60.000 25.18 18.78 41.72 3.33
3341 5691 2.317609 CCTCGTCAAGCGGTTGTGG 61.318 63.158 25.18 17.96 41.72 4.17
3342 5692 2.954753 CTCGTCAAGCGGTTGTGGC 61.955 63.158 25.18 15.72 41.72 5.01
3343 5693 2.972505 CGTCAAGCGGTTGTGGCT 60.973 61.111 25.18 0.00 44.02 4.75
3348 5698 2.032681 AGCGGTTGTGGCTTCTCC 59.967 61.111 0.00 0.00 37.50 3.71
3349 5699 3.056328 GCGGTTGTGGCTTCTCCC 61.056 66.667 0.00 0.00 0.00 4.30
3350 5700 2.429930 CGGTTGTGGCTTCTCCCA 59.570 61.111 0.00 0.00 0.00 4.37
3351 5701 1.002134 CGGTTGTGGCTTCTCCCAT 60.002 57.895 0.00 0.00 37.20 4.00
3352 5702 1.026718 CGGTTGTGGCTTCTCCCATC 61.027 60.000 0.00 0.00 37.20 3.51
3353 5703 0.329596 GGTTGTGGCTTCTCCCATCT 59.670 55.000 0.00 0.00 37.20 2.90
3354 5704 1.457346 GTTGTGGCTTCTCCCATCTG 58.543 55.000 0.00 0.00 37.20 2.90
3355 5705 1.067295 TTGTGGCTTCTCCCATCTGT 58.933 50.000 0.00 0.00 37.20 3.41
3356 5706 0.325933 TGTGGCTTCTCCCATCTGTG 59.674 55.000 0.00 0.00 37.20 3.66
3357 5707 0.326264 GTGGCTTCTCCCATCTGTGT 59.674 55.000 0.00 0.00 37.20 3.72
3358 5708 1.555075 GTGGCTTCTCCCATCTGTGTA 59.445 52.381 0.00 0.00 37.20 2.90
3359 5709 1.833630 TGGCTTCTCCCATCTGTGTAG 59.166 52.381 0.00 0.00 0.00 2.74
3360 5710 1.474143 GGCTTCTCCCATCTGTGTAGC 60.474 57.143 0.00 0.00 0.00 3.58
3361 5711 1.804372 GCTTCTCCCATCTGTGTAGCG 60.804 57.143 0.00 0.00 0.00 4.26
3362 5712 0.824109 TTCTCCCATCTGTGTAGCGG 59.176 55.000 0.00 0.00 0.00 5.52
3363 5713 1.227380 CTCCCATCTGTGTAGCGGC 60.227 63.158 0.00 0.00 0.00 6.53
3364 5714 2.586079 CCCATCTGTGTAGCGGCG 60.586 66.667 0.51 0.51 0.00 6.46
3365 5715 3.264897 CCATCTGTGTAGCGGCGC 61.265 66.667 26.86 26.86 0.00 6.53
3366 5716 3.264897 CATCTGTGTAGCGGCGCC 61.265 66.667 30.40 19.07 0.00 6.53
3367 5717 3.461773 ATCTGTGTAGCGGCGCCT 61.462 61.111 30.40 18.22 0.00 5.52
3368 5718 3.432051 ATCTGTGTAGCGGCGCCTC 62.432 63.158 30.40 18.43 0.00 4.70
3369 5719 4.135153 CTGTGTAGCGGCGCCTCT 62.135 66.667 30.40 24.38 0.00 3.69
3370 5720 4.129737 TGTGTAGCGGCGCCTCTC 62.130 66.667 30.40 21.20 0.00 3.20
3371 5721 4.874977 GTGTAGCGGCGCCTCTCC 62.875 72.222 30.40 12.96 0.00 3.71
3383 5733 3.478274 CTCTCCCCCTGGCTGCTC 61.478 72.222 0.00 0.00 0.00 4.26
3396 5746 4.687215 TGCTCGTGCTGCAGGACC 62.687 66.667 29.71 17.74 40.48 4.46
3398 5748 4.767255 CTCGTGCTGCAGGACCCC 62.767 72.222 29.71 8.48 32.36 4.95
3418 5768 4.147587 CCCTTCCCATGGCCCCAG 62.148 72.222 6.09 0.00 0.00 4.45
3419 5769 3.023116 CCTTCCCATGGCCCCAGA 61.023 66.667 6.09 0.00 0.00 3.86
3420 5770 2.397902 CCTTCCCATGGCCCCAGAT 61.398 63.158 6.09 0.00 0.00 2.90
3421 5771 1.152368 CTTCCCATGGCCCCAGATC 59.848 63.158 6.09 0.00 0.00 2.75
3422 5772 2.687418 CTTCCCATGGCCCCAGATCG 62.687 65.000 6.09 0.00 0.00 3.69
3423 5773 4.275508 CCCATGGCCCCAGATCGG 62.276 72.222 6.09 0.00 0.00 4.18
3424 5774 3.170672 CCATGGCCCCAGATCGGA 61.171 66.667 0.00 0.00 36.56 4.55
3425 5775 2.532532 CCATGGCCCCAGATCGGAT 61.533 63.158 0.00 0.00 36.56 4.18
3426 5776 1.002868 CATGGCCCCAGATCGGATC 60.003 63.158 10.02 10.02 36.56 3.36
3427 5777 1.151943 ATGGCCCCAGATCGGATCT 60.152 57.895 14.68 14.68 41.15 2.75
3434 5784 4.654412 AGATCGGATCTGGCGCGC 62.654 66.667 25.94 25.94 38.44 6.86
3456 5806 3.787001 GGCTCTTCCCCCGACCAG 61.787 72.222 0.00 0.00 0.00 4.00
3457 5807 4.475135 GCTCTTCCCCCGACCAGC 62.475 72.222 0.00 0.00 0.00 4.85
3458 5808 2.685380 CTCTTCCCCCGACCAGCT 60.685 66.667 0.00 0.00 0.00 4.24
3459 5809 3.003173 TCTTCCCCCGACCAGCTG 61.003 66.667 6.78 6.78 0.00 4.24
3460 5810 3.322466 CTTCCCCCGACCAGCTGT 61.322 66.667 13.81 0.11 0.00 4.40
3461 5811 2.852075 TTCCCCCGACCAGCTGTT 60.852 61.111 13.81 0.00 0.00 3.16
3462 5812 3.190738 TTCCCCCGACCAGCTGTTG 62.191 63.158 13.81 0.00 0.00 3.33
3472 5822 3.646715 AGCTGTTGCGGCCCCTTA 61.647 61.111 0.00 0.00 45.42 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.268268 CGCCTAGACATATAAATACTTTCCAAA 57.732 33.333 0.00 0.00 0.00 3.28
11 12 8.426489 ACGCCTAGACATATAAATACTTTCCAA 58.574 33.333 0.00 0.00 0.00 3.53
12 13 7.959175 ACGCCTAGACATATAAATACTTTCCA 58.041 34.615 0.00 0.00 0.00 3.53
13 14 8.709646 CAACGCCTAGACATATAAATACTTTCC 58.290 37.037 0.00 0.00 0.00 3.13
14 15 8.709646 CCAACGCCTAGACATATAAATACTTTC 58.290 37.037 0.00 0.00 0.00 2.62
15 16 7.660208 CCCAACGCCTAGACATATAAATACTTT 59.340 37.037 0.00 0.00 0.00 2.66
16 17 7.015877 TCCCAACGCCTAGACATATAAATACTT 59.984 37.037 0.00 0.00 0.00 2.24
17 18 6.495872 TCCCAACGCCTAGACATATAAATACT 59.504 38.462 0.00 0.00 0.00 2.12
18 19 6.694447 TCCCAACGCCTAGACATATAAATAC 58.306 40.000 0.00 0.00 0.00 1.89
19 20 6.495872 ACTCCCAACGCCTAGACATATAAATA 59.504 38.462 0.00 0.00 0.00 1.40
20 21 5.307196 ACTCCCAACGCCTAGACATATAAAT 59.693 40.000 0.00 0.00 0.00 1.40
21 22 4.652421 ACTCCCAACGCCTAGACATATAAA 59.348 41.667 0.00 0.00 0.00 1.40
22 23 4.220724 ACTCCCAACGCCTAGACATATAA 58.779 43.478 0.00 0.00 0.00 0.98
23 24 3.840991 ACTCCCAACGCCTAGACATATA 58.159 45.455 0.00 0.00 0.00 0.86
24 25 2.679082 ACTCCCAACGCCTAGACATAT 58.321 47.619 0.00 0.00 0.00 1.78
25 26 2.154567 ACTCCCAACGCCTAGACATA 57.845 50.000 0.00 0.00 0.00 2.29
26 27 2.032620 CTACTCCCAACGCCTAGACAT 58.967 52.381 0.00 0.00 0.00 3.06
27 28 1.272313 ACTACTCCCAACGCCTAGACA 60.272 52.381 0.00 0.00 0.00 3.41
28 29 1.472188 ACTACTCCCAACGCCTAGAC 58.528 55.000 0.00 0.00 0.00 2.59
29 30 2.097825 GAACTACTCCCAACGCCTAGA 58.902 52.381 0.00 0.00 0.00 2.43
30 31 1.202268 CGAACTACTCCCAACGCCTAG 60.202 57.143 0.00 0.00 0.00 3.02
31 32 0.813184 CGAACTACTCCCAACGCCTA 59.187 55.000 0.00 0.00 0.00 3.93
32 33 1.183676 ACGAACTACTCCCAACGCCT 61.184 55.000 0.00 0.00 0.00 5.52
33 34 1.012486 CACGAACTACTCCCAACGCC 61.012 60.000 0.00 0.00 0.00 5.68
34 35 1.012486 CCACGAACTACTCCCAACGC 61.012 60.000 0.00 0.00 0.00 4.84
35 36 0.316204 ACCACGAACTACTCCCAACG 59.684 55.000 0.00 0.00 0.00 4.10
36 37 2.140717 CAACCACGAACTACTCCCAAC 58.859 52.381 0.00 0.00 0.00 3.77
37 38 2.040939 TCAACCACGAACTACTCCCAA 58.959 47.619 0.00 0.00 0.00 4.12
38 39 1.342174 GTCAACCACGAACTACTCCCA 59.658 52.381 0.00 0.00 0.00 4.37
39 40 2.075979 GTCAACCACGAACTACTCCC 57.924 55.000 0.00 0.00 0.00 4.30
50 51 4.919754 ACGTAAACTAATCTCGTCAACCAC 59.080 41.667 0.00 0.00 0.00 4.16
51 52 4.919168 CACGTAAACTAATCTCGTCAACCA 59.081 41.667 0.00 0.00 32.47 3.67
52 53 4.325472 CCACGTAAACTAATCTCGTCAACC 59.675 45.833 0.00 0.00 32.47 3.77
53 54 5.060200 GTCCACGTAAACTAATCTCGTCAAC 59.940 44.000 0.00 0.00 32.47 3.18
54 55 5.156355 GTCCACGTAAACTAATCTCGTCAA 58.844 41.667 0.00 0.00 32.47 3.18
55 56 4.216042 TGTCCACGTAAACTAATCTCGTCA 59.784 41.667 0.00 0.00 32.47 4.35
56 57 4.556523 GTGTCCACGTAAACTAATCTCGTC 59.443 45.833 0.00 0.00 32.47 4.20
57 58 4.217118 AGTGTCCACGTAAACTAATCTCGT 59.783 41.667 0.00 0.00 36.20 4.18
58 59 4.557690 CAGTGTCCACGTAAACTAATCTCG 59.442 45.833 0.00 0.00 36.20 4.04
59 60 4.326548 GCAGTGTCCACGTAAACTAATCTC 59.673 45.833 0.00 0.00 36.20 2.75
60 61 4.243270 GCAGTGTCCACGTAAACTAATCT 58.757 43.478 0.00 0.00 36.20 2.40
61 62 3.060363 CGCAGTGTCCACGTAAACTAATC 59.940 47.826 0.00 0.00 36.20 1.75
62 63 2.991190 CGCAGTGTCCACGTAAACTAAT 59.009 45.455 0.00 0.00 36.20 1.73
63 64 2.396601 CGCAGTGTCCACGTAAACTAA 58.603 47.619 0.00 0.00 36.20 2.24
64 65 1.336148 CCGCAGTGTCCACGTAAACTA 60.336 52.381 0.00 0.00 36.20 2.24
65 66 0.599204 CCGCAGTGTCCACGTAAACT 60.599 55.000 0.00 0.00 36.20 2.66
66 67 0.877213 ACCGCAGTGTCCACGTAAAC 60.877 55.000 0.00 0.00 36.20 2.01
67 68 0.598158 GACCGCAGTGTCCACGTAAA 60.598 55.000 0.00 0.00 36.20 2.01
68 69 1.007038 GACCGCAGTGTCCACGTAA 60.007 57.895 0.00 0.00 36.20 3.18
69 70 1.529152 ATGACCGCAGTGTCCACGTA 61.529 55.000 0.00 0.00 34.25 3.57
70 71 2.765250 GATGACCGCAGTGTCCACGT 62.765 60.000 0.00 0.00 34.25 4.49
71 72 2.048222 ATGACCGCAGTGTCCACG 60.048 61.111 0.00 0.00 34.25 4.94
72 73 0.602638 TTGATGACCGCAGTGTCCAC 60.603 55.000 0.00 0.00 34.25 4.02
73 74 0.602638 GTTGATGACCGCAGTGTCCA 60.603 55.000 0.00 0.00 34.25 4.02
74 75 0.602638 TGTTGATGACCGCAGTGTCC 60.603 55.000 0.00 0.00 34.25 4.02
75 76 0.792640 CTGTTGATGACCGCAGTGTC 59.207 55.000 0.00 0.00 35.77 3.67
76 77 1.230635 GCTGTTGATGACCGCAGTGT 61.231 55.000 0.00 0.00 38.26 3.55
77 78 1.499056 GCTGTTGATGACCGCAGTG 59.501 57.895 0.00 0.00 38.26 3.66
78 79 2.029288 CGCTGTTGATGACCGCAGT 61.029 57.895 0.00 0.00 38.27 4.40
79 80 1.690283 CTCGCTGTTGATGACCGCAG 61.690 60.000 0.00 0.00 38.27 5.18
80 81 1.737735 CTCGCTGTTGATGACCGCA 60.738 57.895 0.00 0.00 38.27 5.69
81 82 2.456119 CCTCGCTGTTGATGACCGC 61.456 63.158 0.00 0.00 35.40 5.68
82 83 1.811266 CCCTCGCTGTTGATGACCG 60.811 63.158 0.00 0.00 0.00 4.79
83 84 2.109126 GCCCTCGCTGTTGATGACC 61.109 63.158 0.00 0.00 0.00 4.02
84 85 2.456119 CGCCCTCGCTGTTGATGAC 61.456 63.158 0.00 0.00 0.00 3.06
85 86 2.125552 CGCCCTCGCTGTTGATGA 60.126 61.111 0.00 0.00 0.00 2.92
86 87 2.125552 TCGCCCTCGCTGTTGATG 60.126 61.111 0.00 0.00 35.26 3.07
87 88 1.888436 TTCTCGCCCTCGCTGTTGAT 61.888 55.000 0.00 0.00 35.26 2.57
88 89 2.094757 TTTCTCGCCCTCGCTGTTGA 62.095 55.000 0.00 0.00 35.26 3.18
89 90 1.227999 TTTTCTCGCCCTCGCTGTTG 61.228 55.000 0.00 0.00 35.26 3.33
90 91 0.534203 TTTTTCTCGCCCTCGCTGTT 60.534 50.000 0.00 0.00 35.26 3.16
91 92 1.070786 TTTTTCTCGCCCTCGCTGT 59.929 52.632 0.00 0.00 35.26 4.40
92 93 3.966215 TTTTTCTCGCCCTCGCTG 58.034 55.556 0.00 0.00 35.26 5.18
127 128 0.820871 TTTTAACATGATGGCCCGCC 59.179 50.000 0.00 0.00 0.00 6.13
128 129 2.888834 ATTTTAACATGATGGCCCGC 57.111 45.000 0.00 0.00 0.00 6.13
129 130 5.068460 TCCTTTATTTTAACATGATGGCCCG 59.932 40.000 0.00 0.00 0.00 6.13
130 131 6.280643 GTCCTTTATTTTAACATGATGGCCC 58.719 40.000 0.00 0.00 0.00 5.80
131 132 5.977129 CGTCCTTTATTTTAACATGATGGCC 59.023 40.000 0.00 0.00 0.00 5.36
132 133 5.977129 CCGTCCTTTATTTTAACATGATGGC 59.023 40.000 0.00 0.00 0.00 4.40
133 134 7.095695 ACCGTCCTTTATTTTAACATGATGG 57.904 36.000 0.00 0.00 34.55 3.51
134 135 7.757526 TGACCGTCCTTTATTTTAACATGATG 58.242 34.615 0.00 0.00 0.00 3.07
135 136 7.827236 TCTGACCGTCCTTTATTTTAACATGAT 59.173 33.333 0.00 0.00 0.00 2.45
136 137 7.162761 TCTGACCGTCCTTTATTTTAACATGA 58.837 34.615 0.00 0.00 0.00 3.07
137 138 7.372451 TCTGACCGTCCTTTATTTTAACATG 57.628 36.000 0.00 0.00 0.00 3.21
138 139 7.610305 ACATCTGACCGTCCTTTATTTTAACAT 59.390 33.333 0.00 0.00 0.00 2.71
139 140 6.938030 ACATCTGACCGTCCTTTATTTTAACA 59.062 34.615 0.00 0.00 0.00 2.41
140 141 7.373778 ACATCTGACCGTCCTTTATTTTAAC 57.626 36.000 0.00 0.00 0.00 2.01
141 142 6.311935 CGACATCTGACCGTCCTTTATTTTAA 59.688 38.462 0.00 0.00 0.00 1.52
142 143 5.808540 CGACATCTGACCGTCCTTTATTTTA 59.191 40.000 0.00 0.00 0.00 1.52
143 144 4.630069 CGACATCTGACCGTCCTTTATTTT 59.370 41.667 0.00 0.00 0.00 1.82
144 145 4.181578 CGACATCTGACCGTCCTTTATTT 58.818 43.478 0.00 0.00 0.00 1.40
145 146 3.430374 CCGACATCTGACCGTCCTTTATT 60.430 47.826 0.00 0.00 0.00 1.40
146 147 2.100916 CCGACATCTGACCGTCCTTTAT 59.899 50.000 0.00 0.00 0.00 1.40
147 148 1.475280 CCGACATCTGACCGTCCTTTA 59.525 52.381 0.00 0.00 0.00 1.85
148 149 0.246635 CCGACATCTGACCGTCCTTT 59.753 55.000 0.00 0.00 0.00 3.11
149 150 1.890894 CCGACATCTGACCGTCCTT 59.109 57.895 0.00 0.00 0.00 3.36
150 151 2.711922 GCCGACATCTGACCGTCCT 61.712 63.158 0.00 0.00 0.00 3.85
151 152 2.202756 GCCGACATCTGACCGTCC 60.203 66.667 0.00 0.00 0.00 4.79
152 153 1.985447 TACGCCGACATCTGACCGTC 61.985 60.000 0.00 0.00 0.00 4.79
153 154 1.381928 ATACGCCGACATCTGACCGT 61.382 55.000 0.00 0.00 0.00 4.83
154 155 0.589708 TATACGCCGACATCTGACCG 59.410 55.000 0.00 0.00 0.00 4.79
155 156 1.878088 TCTATACGCCGACATCTGACC 59.122 52.381 0.00 0.00 0.00 4.02
156 157 2.666069 GCTCTATACGCCGACATCTGAC 60.666 54.545 0.00 0.00 0.00 3.51
157 158 1.535896 GCTCTATACGCCGACATCTGA 59.464 52.381 0.00 0.00 0.00 3.27
158 159 1.401670 GGCTCTATACGCCGACATCTG 60.402 57.143 0.00 0.00 37.87 2.90
159 160 0.882474 GGCTCTATACGCCGACATCT 59.118 55.000 0.00 0.00 37.87 2.90
160 161 3.403276 GGCTCTATACGCCGACATC 57.597 57.895 0.00 0.00 37.87 3.06
165 166 7.627939 ACTAAATAAGTATGGCTCTATACGCCG 60.628 40.741 0.00 0.00 43.13 6.46
166 167 7.545489 ACTAAATAAGTATGGCTCTATACGCC 58.455 38.462 2.04 2.04 41.63 5.68
167 168 8.983307 AACTAAATAAGTATGGCTCTATACGC 57.017 34.615 0.00 0.00 37.50 4.42
211 212 2.176546 CGTGCATTGCAACGGGAG 59.823 61.111 13.94 0.00 41.47 4.30
212 213 3.361158 CCGTGCATTGCAACGGGA 61.361 61.111 29.18 5.00 43.66 5.14
213 214 3.361158 TCCGTGCATTGCAACGGG 61.361 61.111 32.53 24.89 45.60 5.28
214 215 2.126888 GTCCGTGCATTGCAACGG 60.127 61.111 30.14 30.14 46.29 4.44
215 216 1.066656 CATGTCCGTGCATTGCAACG 61.067 55.000 13.94 17.64 41.47 4.10
216 217 0.039256 ACATGTCCGTGCATTGCAAC 60.039 50.000 13.94 8.93 41.47 4.17
217 218 0.672889 AACATGTCCGTGCATTGCAA 59.327 45.000 13.94 0.00 41.47 4.08
218 219 0.672889 AAACATGTCCGTGCATTGCA 59.327 45.000 7.38 7.38 35.60 4.08
219 220 1.062258 CAAACATGTCCGTGCATTGC 58.938 50.000 0.00 0.46 0.00 3.56
220 221 1.062258 GCAAACATGTCCGTGCATTG 58.938 50.000 18.97 10.80 36.97 2.82
221 222 0.961019 AGCAAACATGTCCGTGCATT 59.039 45.000 23.33 7.95 39.50 3.56
222 223 1.739466 CTAGCAAACATGTCCGTGCAT 59.261 47.619 23.33 14.41 39.50 3.96
223 224 1.155889 CTAGCAAACATGTCCGTGCA 58.844 50.000 23.33 12.86 39.50 4.57
224 225 1.156736 ACTAGCAAACATGTCCGTGC 58.843 50.000 17.10 17.10 37.26 5.34
225 226 6.087687 CGTATATACTAGCAAACATGTCCGTG 59.912 42.308 11.05 0.00 0.00 4.94
226 227 6.016860 TCGTATATACTAGCAAACATGTCCGT 60.017 38.462 11.05 0.00 0.00 4.69
227 228 6.376177 TCGTATATACTAGCAAACATGTCCG 58.624 40.000 11.05 0.00 0.00 4.79
228 229 7.591165 TCTCGTATATACTAGCAAACATGTCC 58.409 38.462 11.05 0.00 0.00 4.02
229 230 9.627395 ATTCTCGTATATACTAGCAAACATGTC 57.373 33.333 11.05 0.00 0.00 3.06
244 245 9.640963 GTGCCTATTGACTTTATTCTCGTATAT 57.359 33.333 0.00 0.00 0.00 0.86
245 246 8.086522 GGTGCCTATTGACTTTATTCTCGTATA 58.913 37.037 0.00 0.00 0.00 1.47
246 247 6.929606 GGTGCCTATTGACTTTATTCTCGTAT 59.070 38.462 0.00 0.00 0.00 3.06
247 248 6.127281 TGGTGCCTATTGACTTTATTCTCGTA 60.127 38.462 0.00 0.00 0.00 3.43
248 249 5.116882 GGTGCCTATTGACTTTATTCTCGT 58.883 41.667 0.00 0.00 0.00 4.18
249 250 5.116180 TGGTGCCTATTGACTTTATTCTCG 58.884 41.667 0.00 0.00 0.00 4.04
250 251 8.854614 ATATGGTGCCTATTGACTTTATTCTC 57.145 34.615 0.00 0.00 0.00 2.87
251 252 8.439971 TGATATGGTGCCTATTGACTTTATTCT 58.560 33.333 0.00 0.00 0.00 2.40
252 253 8.507249 GTGATATGGTGCCTATTGACTTTATTC 58.493 37.037 0.00 0.00 0.00 1.75
253 254 8.220559 AGTGATATGGTGCCTATTGACTTTATT 58.779 33.333 0.00 0.00 0.00 1.40
254 255 7.749666 AGTGATATGGTGCCTATTGACTTTAT 58.250 34.615 0.00 0.00 0.00 1.40
255 256 7.136822 AGTGATATGGTGCCTATTGACTTTA 57.863 36.000 0.00 0.00 0.00 1.85
256 257 6.006275 AGTGATATGGTGCCTATTGACTTT 57.994 37.500 0.00 0.00 0.00 2.66
257 258 5.636903 AGTGATATGGTGCCTATTGACTT 57.363 39.130 0.00 0.00 0.00 3.01
258 259 5.130975 TGAAGTGATATGGTGCCTATTGACT 59.869 40.000 0.00 0.00 0.00 3.41
259 260 5.237344 GTGAAGTGATATGGTGCCTATTGAC 59.763 44.000 0.00 0.00 0.00 3.18
260 261 5.368145 GTGAAGTGATATGGTGCCTATTGA 58.632 41.667 0.00 0.00 0.00 2.57
261 262 4.212004 CGTGAAGTGATATGGTGCCTATTG 59.788 45.833 0.00 0.00 0.00 1.90
262 263 4.380531 CGTGAAGTGATATGGTGCCTATT 58.619 43.478 0.00 0.00 0.00 1.73
263 264 3.244215 CCGTGAAGTGATATGGTGCCTAT 60.244 47.826 0.00 0.00 0.00 2.57
264 265 2.102420 CCGTGAAGTGATATGGTGCCTA 59.898 50.000 0.00 0.00 0.00 3.93
265 266 1.134401 CCGTGAAGTGATATGGTGCCT 60.134 52.381 0.00 0.00 0.00 4.75
266 267 1.134521 TCCGTGAAGTGATATGGTGCC 60.135 52.381 0.00 0.00 0.00 5.01
267 268 1.933853 GTCCGTGAAGTGATATGGTGC 59.066 52.381 0.00 0.00 0.00 5.01
268 269 2.168521 AGGTCCGTGAAGTGATATGGTG 59.831 50.000 0.00 0.00 0.00 4.17
269 270 2.467880 AGGTCCGTGAAGTGATATGGT 58.532 47.619 0.00 0.00 0.00 3.55
270 271 3.118775 TCAAGGTCCGTGAAGTGATATGG 60.119 47.826 4.87 0.00 0.00 2.74
271 272 4.123497 TCAAGGTCCGTGAAGTGATATG 57.877 45.455 4.87 0.00 0.00 1.78
272 273 4.759782 CTTCAAGGTCCGTGAAGTGATAT 58.240 43.478 29.33 0.00 44.58 1.63
273 274 4.188247 CTTCAAGGTCCGTGAAGTGATA 57.812 45.455 29.33 6.86 44.58 2.15
274 275 3.045601 CTTCAAGGTCCGTGAAGTGAT 57.954 47.619 29.33 0.00 44.58 3.06
275 276 2.526304 CTTCAAGGTCCGTGAAGTGA 57.474 50.000 29.33 7.81 44.58 3.41
279 280 5.221165 GGAATTTTTCTTCAAGGTCCGTGAA 60.221 40.000 17.83 17.83 33.97 3.18
280 281 4.277423 GGAATTTTTCTTCAAGGTCCGTGA 59.723 41.667 3.03 3.03 0.00 4.35
281 282 4.546570 GGAATTTTTCTTCAAGGTCCGTG 58.453 43.478 0.00 0.00 0.00 4.94
282 283 3.572682 GGGAATTTTTCTTCAAGGTCCGT 59.427 43.478 0.00 0.00 0.00 4.69
283 284 3.365969 CGGGAATTTTTCTTCAAGGTCCG 60.366 47.826 0.00 0.00 0.00 4.79
284 285 3.572682 ACGGGAATTTTTCTTCAAGGTCC 59.427 43.478 0.00 0.00 0.00 4.46
285 286 4.546570 CACGGGAATTTTTCTTCAAGGTC 58.453 43.478 0.00 0.00 0.00 3.85
286 287 3.320826 CCACGGGAATTTTTCTTCAAGGT 59.679 43.478 0.00 0.00 0.00 3.50
287 288 3.306019 CCCACGGGAATTTTTCTTCAAGG 60.306 47.826 0.00 0.00 37.50 3.61
288 289 3.913089 CCCACGGGAATTTTTCTTCAAG 58.087 45.455 0.00 0.00 37.50 3.02
308 309 3.961414 TTTGCGTCCCCCTGTCCC 61.961 66.667 0.00 0.00 0.00 4.46
309 310 2.671963 GTTTGCGTCCCCCTGTCC 60.672 66.667 0.00 0.00 0.00 4.02
310 311 1.515521 CTTGTTTGCGTCCCCCTGTC 61.516 60.000 0.00 0.00 0.00 3.51
311 312 1.528309 CTTGTTTGCGTCCCCCTGT 60.528 57.895 0.00 0.00 0.00 4.00
312 313 2.268076 CCTTGTTTGCGTCCCCCTG 61.268 63.158 0.00 0.00 0.00 4.45
313 314 2.115266 CCTTGTTTGCGTCCCCCT 59.885 61.111 0.00 0.00 0.00 4.79
314 315 3.680786 GCCTTGTTTGCGTCCCCC 61.681 66.667 0.00 0.00 0.00 5.40
315 316 4.038080 CGCCTTGTTTGCGTCCCC 62.038 66.667 0.00 0.00 46.59 4.81
317 318 3.330955 ACAATCGCCTTGTTTGCGTCC 62.331 52.381 4.48 0.00 45.98 4.79
318 319 0.040425 ACAATCGCCTTGTTTGCGTC 60.040 50.000 4.48 0.00 45.98 5.19
319 320 2.029743 ACAATCGCCTTGTTTGCGT 58.970 47.368 4.48 0.00 45.98 5.24
320 321 4.942090 ACAATCGCCTTGTTTGCG 57.058 50.000 0.00 0.00 45.98 4.85
341 342 1.066587 GGGCCGATCTCAGACGAAG 59.933 63.158 0.00 0.00 0.00 3.79
342 343 1.043116 ATGGGCCGATCTCAGACGAA 61.043 55.000 0.00 0.00 0.00 3.85
360 361 7.327975 TGGTACAGAAATGTCGATTACTTCAT 58.672 34.615 0.00 0.00 0.00 2.57
361 362 6.693466 TGGTACAGAAATGTCGATTACTTCA 58.307 36.000 0.00 0.00 0.00 3.02
377 378 6.917560 ACATAGAATGGCCGAATGGTACAGA 61.918 44.000 0.00 0.00 36.55 3.41
407 408 4.023792 CGTCCATATGTTCATGGTGATTGG 60.024 45.833 1.24 0.00 44.98 3.16
448 449 7.009815 GTGACCGAAATGTCTAAATTACGATGA 59.990 37.037 0.00 0.00 36.21 2.92
455 456 6.668323 CACTTGTGACCGAAATGTCTAAATT 58.332 36.000 0.00 0.00 36.21 1.82
456 457 5.334879 GCACTTGTGACCGAAATGTCTAAAT 60.335 40.000 4.79 0.00 36.21 1.40
458 459 3.496884 GCACTTGTGACCGAAATGTCTAA 59.503 43.478 4.79 0.00 36.21 2.10
459 460 3.064207 GCACTTGTGACCGAAATGTCTA 58.936 45.455 4.79 0.00 36.21 2.59
461 462 1.601903 TGCACTTGTGACCGAAATGTC 59.398 47.619 4.79 0.00 35.77 3.06
462 463 1.674359 TGCACTTGTGACCGAAATGT 58.326 45.000 4.79 0.00 0.00 2.71
463 464 2.995466 ATGCACTTGTGACCGAAATG 57.005 45.000 4.79 0.00 0.00 2.32
464 465 3.407698 TGTATGCACTTGTGACCGAAAT 58.592 40.909 4.79 0.00 0.00 2.17
466 467 2.535012 TGTATGCACTTGTGACCGAA 57.465 45.000 4.79 0.00 0.00 4.30
467 468 2.535012 TTGTATGCACTTGTGACCGA 57.465 45.000 4.79 0.00 0.00 4.69
468 469 3.829886 ATTTGTATGCACTTGTGACCG 57.170 42.857 4.79 0.00 0.00 4.79
469 470 6.751888 GGATAAATTTGTATGCACTTGTGACC 59.248 38.462 4.79 0.00 0.00 4.02
470 471 7.485913 CAGGATAAATTTGTATGCACTTGTGAC 59.514 37.037 4.79 0.00 0.00 3.67
475 476 5.421693 TGGCAGGATAAATTTGTATGCACTT 59.578 36.000 19.49 0.00 33.94 3.16
476 477 4.955450 TGGCAGGATAAATTTGTATGCACT 59.045 37.500 19.49 1.18 33.94 4.40
477 478 5.163519 ACTGGCAGGATAAATTTGTATGCAC 60.164 40.000 20.34 12.58 33.94 4.57
478 479 4.955450 ACTGGCAGGATAAATTTGTATGCA 59.045 37.500 20.34 0.00 33.94 3.96
479 480 5.520376 ACTGGCAGGATAAATTTGTATGC 57.480 39.130 20.34 13.18 0.00 3.14
480 481 7.338800 AGAACTGGCAGGATAAATTTGTATG 57.661 36.000 20.34 0.00 0.00 2.39
481 482 7.502561 GGTAGAACTGGCAGGATAAATTTGTAT 59.497 37.037 20.34 0.00 0.00 2.29
482 483 6.826741 GGTAGAACTGGCAGGATAAATTTGTA 59.173 38.462 20.34 2.12 0.00 2.41
483 484 5.652452 GGTAGAACTGGCAGGATAAATTTGT 59.348 40.000 20.34 3.12 0.00 2.83
484 485 5.067805 GGGTAGAACTGGCAGGATAAATTTG 59.932 44.000 20.34 0.00 0.00 2.32
485 486 5.044105 AGGGTAGAACTGGCAGGATAAATTT 60.044 40.000 20.34 1.25 0.00 1.82
486 487 4.478686 AGGGTAGAACTGGCAGGATAAATT 59.521 41.667 20.34 2.07 0.00 1.82
487 488 4.047883 AGGGTAGAACTGGCAGGATAAAT 58.952 43.478 20.34 0.95 0.00 1.40
488 489 3.199946 CAGGGTAGAACTGGCAGGATAAA 59.800 47.826 20.34 0.00 32.38 1.40
489 490 2.771943 CAGGGTAGAACTGGCAGGATAA 59.228 50.000 20.34 0.00 32.38 1.75
490 491 2.292918 ACAGGGTAGAACTGGCAGGATA 60.293 50.000 20.34 5.49 40.23 2.59
491 492 1.207791 CAGGGTAGAACTGGCAGGAT 58.792 55.000 20.34 7.16 32.38 3.24
492 493 0.178903 ACAGGGTAGAACTGGCAGGA 60.179 55.000 20.34 0.00 40.23 3.86
493 494 1.568504 TACAGGGTAGAACTGGCAGG 58.431 55.000 20.34 0.58 40.23 4.85
494 495 3.914426 ATTACAGGGTAGAACTGGCAG 57.086 47.619 14.16 14.16 40.23 4.85
495 496 4.650972 AAATTACAGGGTAGAACTGGCA 57.349 40.909 0.00 0.00 40.23 4.92
496 497 5.985911 TCTAAATTACAGGGTAGAACTGGC 58.014 41.667 0.00 0.00 40.23 4.85
497 498 6.539103 GCTTCTAAATTACAGGGTAGAACTGG 59.461 42.308 0.00 0.00 40.23 4.00
580 581 3.370978 CGTACTGCCTCAACATTACCAAG 59.629 47.826 0.00 0.00 0.00 3.61
590 600 4.351938 ACGCGCGTACTGCCTCAA 62.352 61.111 37.08 0.00 42.08 3.02
618 628 0.935196 GCCCTTAGGTTTACGCGATG 59.065 55.000 15.93 0.00 34.57 3.84
638 648 3.242739 ACAAGACAAAAGCGTGCACTTAG 60.243 43.478 16.19 0.00 0.00 2.18
639 649 2.680841 ACAAGACAAAAGCGTGCACTTA 59.319 40.909 16.19 0.00 0.00 2.24
640 650 1.472480 ACAAGACAAAAGCGTGCACTT 59.528 42.857 16.19 0.00 0.00 3.16
647 657 3.108144 CTCACCAAACAAGACAAAAGCG 58.892 45.455 0.00 0.00 0.00 4.68
661 671 2.368875 GAGAACTCCAAGGACTCACCAA 59.631 50.000 0.00 0.00 42.04 3.67
667 677 1.001406 CAAGCGAGAACTCCAAGGACT 59.999 52.381 0.00 0.00 0.00 3.85
744 757 2.483014 TTTGTGGTAGATTCACCCCG 57.517 50.000 0.00 0.00 37.84 5.73
758 774 8.702163 AGTTCAAACCAACTAGAAAATTTGTG 57.298 30.769 0.00 0.00 34.70 3.33
916 944 7.730784 ACTATATATACACCAGCAAGGAGAACT 59.269 37.037 1.83 0.00 41.22 3.01
917 945 7.897864 ACTATATATACACCAGCAAGGAGAAC 58.102 38.462 1.83 0.00 41.22 3.01
918 946 8.367911 CAACTATATATACACCAGCAAGGAGAA 58.632 37.037 1.83 0.00 41.22 2.87
944 972 2.030717 TGAGAACTGAGCAAGTCGACTC 60.031 50.000 20.33 7.41 38.56 3.36
968 996 1.690633 TGGGATGACAGGAGAGGGC 60.691 63.158 0.00 0.00 0.00 5.19
1042 1076 0.942962 GCCATTTCTGCCTCGATCTG 59.057 55.000 0.00 0.00 0.00 2.90
1197 1231 6.260936 TCACCATCTGAAGAAAAGAAACAGAC 59.739 38.462 0.00 0.00 39.76 3.51
1325 1393 4.070716 AGCAAGAAGAATGTGGAGAACAG 58.929 43.478 0.00 0.00 43.64 3.16
1327 1395 3.817647 ACAGCAAGAAGAATGTGGAGAAC 59.182 43.478 0.00 0.00 0.00 3.01
1570 1638 0.035630 ATCTGCAGGTTGCTCACTCC 60.036 55.000 15.13 0.00 45.31 3.85
1684 1752 2.372690 CGAACTCGTGCTTCCCGTG 61.373 63.158 0.00 0.00 34.11 4.94
1685 1753 2.049433 CGAACTCGTGCTTCCCGT 60.049 61.111 0.00 0.00 34.11 5.28
2020 2097 4.444056 CGTACGTACATCAATGATCATGCA 59.556 41.667 24.50 0.00 0.00 3.96
2138 2255 1.475403 CGAGGATGTACACCCAGAGT 58.525 55.000 9.55 0.00 0.00 3.24
2310 2431 1.444553 CTCTCTTGGGCGTGTCGAC 60.445 63.158 9.11 9.11 0.00 4.20
2348 2469 2.494073 TCACACCATACACTCATGCGTA 59.506 45.455 0.00 0.00 0.00 4.42
2349 2470 1.275010 TCACACCATACACTCATGCGT 59.725 47.619 0.00 0.00 0.00 5.24
2350 2471 2.008752 TCACACCATACACTCATGCG 57.991 50.000 0.00 0.00 0.00 4.73
2379 2500 5.812642 AGACTAGTTAGGAATGCATCGTTTG 59.187 40.000 0.00 0.00 0.00 2.93
2396 2519 4.389382 CGATACACGCTATGCTAGACTAGT 59.611 45.833 11.15 0.00 34.51 2.57
2447 2570 7.566760 AAGCACATGGATATTTATTCGTTCA 57.433 32.000 0.00 0.00 0.00 3.18
2546 2669 4.333649 AGAAAATGGACGTGCACATATGAG 59.666 41.667 13.47 2.11 0.00 2.90
2602 4926 9.146586 TGGGTAACTAAACTCTGTTCTACTTAA 57.853 33.333 0.00 0.00 0.00 1.85
3045 5395 8.747538 TTTAGACTATATATGCGGCTATCTGA 57.252 34.615 0.00 0.00 0.00 3.27
3046 5396 9.973450 ATTTTAGACTATATATGCGGCTATCTG 57.027 33.333 0.00 0.00 0.00 2.90
3070 5420 8.749354 GGGACAATCTTCCACATTTAAACTATT 58.251 33.333 0.00 0.00 37.40 1.73
3071 5421 7.342026 GGGGACAATCTTCCACATTTAAACTAT 59.658 37.037 0.00 0.00 39.15 2.12
3072 5422 6.661805 GGGGACAATCTTCCACATTTAAACTA 59.338 38.462 0.00 0.00 39.15 2.24
3073 5423 5.480422 GGGGACAATCTTCCACATTTAAACT 59.520 40.000 0.00 0.00 39.15 2.66
3074 5424 5.480422 AGGGGACAATCTTCCACATTTAAAC 59.520 40.000 0.00 0.00 42.24 2.01
3075 5425 5.650283 AGGGGACAATCTTCCACATTTAAA 58.350 37.500 0.00 0.00 42.24 1.52
3076 5426 5.269554 AGGGGACAATCTTCCACATTTAA 57.730 39.130 0.00 0.00 42.24 1.52
3077 5427 4.946160 AGGGGACAATCTTCCACATTTA 57.054 40.909 0.00 0.00 42.24 1.40
3078 5428 3.833559 AGGGGACAATCTTCCACATTT 57.166 42.857 0.00 0.00 42.24 2.32
3079 5429 4.325344 CCTTAGGGGACAATCTTCCACATT 60.325 45.833 0.00 0.00 42.24 2.71
3080 5430 3.203040 CCTTAGGGGACAATCTTCCACAT 59.797 47.826 0.00 0.00 42.24 3.21
3081 5431 2.576191 CCTTAGGGGACAATCTTCCACA 59.424 50.000 0.00 0.00 42.24 4.17
3082 5432 2.684038 GCCTTAGGGGACAATCTTCCAC 60.684 54.545 0.00 0.00 39.72 4.02
3083 5433 1.564348 GCCTTAGGGGACAATCTTCCA 59.436 52.381 0.00 0.00 37.40 3.53
3084 5434 1.133761 GGCCTTAGGGGACAATCTTCC 60.134 57.143 0.00 0.00 44.40 3.46
3085 5435 2.350057 GGCCTTAGGGGACAATCTTC 57.650 55.000 0.00 0.00 44.40 2.87
3092 5442 3.477346 GGTCGGGCCTTAGGGGAC 61.477 72.222 0.84 0.00 44.23 4.46
3093 5443 4.810184 GGGTCGGGCCTTAGGGGA 62.810 72.222 0.84 0.00 37.23 4.81
3106 5456 3.998672 TGAAGGTGACGCGGGGTC 61.999 66.667 17.34 17.34 46.27 4.46
3107 5457 4.309950 GTGAAGGTGACGCGGGGT 62.310 66.667 12.47 0.00 0.00 4.95
3108 5458 4.308458 TGTGAAGGTGACGCGGGG 62.308 66.667 12.47 0.00 0.00 5.73
3109 5459 2.738521 CTGTGAAGGTGACGCGGG 60.739 66.667 12.47 0.00 0.00 6.13
3110 5460 2.738521 CCTGTGAAGGTGACGCGG 60.739 66.667 12.47 0.00 0.00 6.46
3111 5461 3.414700 GCCTGTGAAGGTGACGCG 61.415 66.667 3.53 3.53 0.00 6.01
3112 5462 3.414700 CGCCTGTGAAGGTGACGC 61.415 66.667 0.00 0.00 41.74 5.19
3113 5463 2.338620 TCGCCTGTGAAGGTGACG 59.661 61.111 3.92 0.00 42.86 4.35
3115 5465 1.069090 GTGTCGCCTGTGAAGGTGA 59.931 57.895 3.92 3.92 45.21 4.02
3116 5466 2.310233 CGTGTCGCCTGTGAAGGTG 61.310 63.158 0.00 0.00 40.62 4.00
3117 5467 2.029073 CGTGTCGCCTGTGAAGGT 59.971 61.111 0.00 0.00 0.00 3.50
3118 5468 1.734477 CTCGTGTCGCCTGTGAAGG 60.734 63.158 0.00 0.00 0.00 3.46
3119 5469 1.734477 CCTCGTGTCGCCTGTGAAG 60.734 63.158 0.00 0.00 0.00 3.02
3120 5470 2.338620 CCTCGTGTCGCCTGTGAA 59.661 61.111 0.00 0.00 0.00 3.18
3121 5471 3.680786 CCCTCGTGTCGCCTGTGA 61.681 66.667 0.00 0.00 0.00 3.58
3122 5472 3.220999 TTCCCTCGTGTCGCCTGTG 62.221 63.158 0.00 0.00 0.00 3.66
3123 5473 2.915659 TTCCCTCGTGTCGCCTGT 60.916 61.111 0.00 0.00 0.00 4.00
3124 5474 2.432628 GTTCCCTCGTGTCGCCTG 60.433 66.667 0.00 0.00 0.00 4.85
3125 5475 3.692406 GGTTCCCTCGTGTCGCCT 61.692 66.667 0.00 0.00 0.00 5.52
3126 5476 4.754667 GGGTTCCCTCGTGTCGCC 62.755 72.222 0.00 0.00 0.00 5.54
3127 5477 2.280823 CTAGGGTTCCCTCGTGTCGC 62.281 65.000 14.24 0.00 37.64 5.19
3128 5478 1.807886 CTAGGGTTCCCTCGTGTCG 59.192 63.158 14.24 0.00 37.64 4.35
3129 5479 1.516423 GCTAGGGTTCCCTCGTGTC 59.484 63.158 14.24 0.00 37.64 3.67
3130 5480 1.988406 GGCTAGGGTTCCCTCGTGT 60.988 63.158 14.24 0.00 37.64 4.49
3131 5481 2.901042 GGCTAGGGTTCCCTCGTG 59.099 66.667 14.24 7.28 37.64 4.35
3132 5482 2.758737 CGGCTAGGGTTCCCTCGT 60.759 66.667 14.24 0.00 37.64 4.18
3133 5483 4.222847 GCGGCTAGGGTTCCCTCG 62.223 72.222 14.24 12.63 37.64 4.63
3134 5484 4.222847 CGCGGCTAGGGTTCCCTC 62.223 72.222 14.24 0.81 37.64 4.30
3152 5502 4.335647 AAGGAGGTGCTGTGGCGG 62.336 66.667 0.00 0.00 42.25 6.13
3153 5503 2.743928 GAAGGAGGTGCTGTGGCG 60.744 66.667 0.00 0.00 42.25 5.69
3154 5504 1.673665 CAGAAGGAGGTGCTGTGGC 60.674 63.158 0.00 0.00 39.26 5.01
3155 5505 1.002868 CCAGAAGGAGGTGCTGTGG 60.003 63.158 0.00 0.00 36.89 4.17
3156 5506 1.673665 GCCAGAAGGAGGTGCTGTG 60.674 63.158 0.00 0.00 36.89 3.66
3157 5507 2.753029 GCCAGAAGGAGGTGCTGT 59.247 61.111 0.00 0.00 36.89 4.40
3158 5508 2.045536 GGCCAGAAGGAGGTGCTG 60.046 66.667 0.00 0.00 36.89 4.41
3159 5509 1.919600 GATGGCCAGAAGGAGGTGCT 61.920 60.000 13.05 0.00 36.89 4.40
3160 5510 1.452833 GATGGCCAGAAGGAGGTGC 60.453 63.158 13.05 0.00 36.89 5.01
3161 5511 1.225704 GGATGGCCAGAAGGAGGTG 59.774 63.158 13.05 0.00 36.89 4.00
3162 5512 2.003548 GGGATGGCCAGAAGGAGGT 61.004 63.158 13.05 0.00 36.89 3.85
3163 5513 2.761465 GGGGATGGCCAGAAGGAGG 61.761 68.421 13.05 0.00 36.89 4.30
3164 5514 2.761465 GGGGGATGGCCAGAAGGAG 61.761 68.421 13.05 0.00 36.89 3.69
3165 5515 2.696125 GGGGGATGGCCAGAAGGA 60.696 66.667 13.05 0.00 36.89 3.36
3166 5516 4.195334 CGGGGGATGGCCAGAAGG 62.195 72.222 13.05 0.00 35.15 3.46
3167 5517 4.883354 GCGGGGGATGGCCAGAAG 62.883 72.222 13.05 0.00 35.15 2.85
3170 5520 4.962836 GATGCGGGGGATGGCCAG 62.963 72.222 13.05 0.00 35.15 4.85
3228 5578 3.437795 CAAGGCAAGGCAGGAGCG 61.438 66.667 0.00 0.00 43.41 5.03
3229 5579 3.066814 CCAAGGCAAGGCAGGAGC 61.067 66.667 0.00 0.00 41.10 4.70
3236 5586 2.281761 AGTGACGCCAAGGCAAGG 60.282 61.111 12.19 0.00 41.33 3.61
3237 5587 2.949106 CAGTGACGCCAAGGCAAG 59.051 61.111 12.19 0.00 41.33 4.01
3238 5588 3.286751 GCAGTGACGCCAAGGCAA 61.287 61.111 12.19 0.00 41.33 4.52
3247 5597 4.003788 AAGTCCCCCGCAGTGACG 62.004 66.667 0.00 0.00 34.24 4.35
3248 5598 2.358737 CAAGTCCCCCGCAGTGAC 60.359 66.667 0.00 0.00 0.00 3.67
3249 5599 3.636231 CCAAGTCCCCCGCAGTGA 61.636 66.667 0.00 0.00 0.00 3.41
3280 5630 2.383527 CCGTCGGAGAGCAGTTTGC 61.384 63.158 4.91 0.00 45.46 3.68
3281 5631 1.006102 ACCGTCGGAGAGCAGTTTG 60.006 57.895 20.51 0.00 36.95 2.93
3282 5632 1.006102 CACCGTCGGAGAGCAGTTT 60.006 57.895 20.51 0.00 36.95 2.66
3283 5633 1.901948 TCACCGTCGGAGAGCAGTT 60.902 57.895 20.51 0.00 36.95 3.16
3284 5634 2.282251 TCACCGTCGGAGAGCAGT 60.282 61.111 20.51 0.00 36.95 4.40
3285 5635 2.179517 GTCACCGTCGGAGAGCAG 59.820 66.667 20.51 0.42 36.95 4.24
3286 5636 3.733960 CGTCACCGTCGGAGAGCA 61.734 66.667 20.51 0.00 36.95 4.26
3295 5645 3.264866 GAGAAGACGCCGTCACCGT 62.265 63.158 20.65 0.98 42.31 4.83
3296 5646 2.504244 GAGAAGACGCCGTCACCG 60.504 66.667 20.65 0.00 34.60 4.94
3297 5647 2.126031 GGAGAAGACGCCGTCACC 60.126 66.667 20.65 12.68 34.60 4.02
3305 5655 3.743091 GAGAGCGCCGGAGAAGACG 62.743 68.421 10.31 0.00 0.00 4.18
3306 5656 2.103340 GAGAGCGCCGGAGAAGAC 59.897 66.667 10.31 0.00 0.00 3.01
3307 5657 3.141488 GGAGAGCGCCGGAGAAGA 61.141 66.667 10.31 0.00 0.00 2.87
3308 5658 3.132481 GAGGAGAGCGCCGGAGAAG 62.132 68.421 10.31 0.00 0.00 2.85
3309 5659 3.141488 GAGGAGAGCGCCGGAGAA 61.141 66.667 10.31 0.00 0.00 2.87
3314 5664 4.116328 TTGACGAGGAGAGCGCCG 62.116 66.667 2.29 0.84 0.00 6.46
3315 5665 2.202676 CTTGACGAGGAGAGCGCC 60.203 66.667 2.29 0.00 0.00 6.53
3316 5666 2.883253 GCTTGACGAGGAGAGCGC 60.883 66.667 0.00 0.00 0.00 5.92
3326 5676 2.443957 GAAGCCACAACCGCTTGACG 62.444 60.000 0.00 0.00 46.37 4.35
3327 5677 1.166531 AGAAGCCACAACCGCTTGAC 61.167 55.000 0.00 0.00 46.37 3.18
3328 5678 0.884704 GAGAAGCCACAACCGCTTGA 60.885 55.000 0.00 0.00 46.37 3.02
3329 5679 1.576421 GAGAAGCCACAACCGCTTG 59.424 57.895 0.00 0.00 46.37 4.01
3331 5681 2.032681 GGAGAAGCCACAACCGCT 59.967 61.111 0.00 0.00 38.53 5.52
3332 5682 3.056328 GGGAGAAGCCACAACCGC 61.056 66.667 0.00 0.00 38.95 5.68
3333 5683 1.002134 ATGGGAGAAGCCACAACCG 60.002 57.895 0.00 0.00 38.95 4.44
3334 5684 0.329596 AGATGGGAGAAGCCACAACC 59.670 55.000 0.00 0.00 38.95 3.77
3335 5685 1.271597 ACAGATGGGAGAAGCCACAAC 60.272 52.381 0.00 0.00 38.95 3.32
3336 5686 1.067295 ACAGATGGGAGAAGCCACAA 58.933 50.000 0.00 0.00 38.95 3.33
3337 5687 0.325933 CACAGATGGGAGAAGCCACA 59.674 55.000 0.00 0.00 38.95 4.17
3338 5688 0.326264 ACACAGATGGGAGAAGCCAC 59.674 55.000 0.00 0.00 38.95 5.01
3339 5689 1.833630 CTACACAGATGGGAGAAGCCA 59.166 52.381 0.00 0.00 38.95 4.75
3340 5690 1.474143 GCTACACAGATGGGAGAAGCC 60.474 57.143 0.00 0.00 0.00 4.35
3341 5691 1.804372 CGCTACACAGATGGGAGAAGC 60.804 57.143 0.00 0.00 0.00 3.86
3342 5692 1.202463 CCGCTACACAGATGGGAGAAG 60.202 57.143 0.00 0.00 0.00 2.85
3343 5693 0.824109 CCGCTACACAGATGGGAGAA 59.176 55.000 0.00 0.00 0.00 2.87
3344 5694 1.676678 GCCGCTACACAGATGGGAGA 61.677 60.000 0.00 0.00 0.00 3.71
3345 5695 1.227380 GCCGCTACACAGATGGGAG 60.227 63.158 0.00 0.00 0.00 4.30
3346 5696 2.900273 GCCGCTACACAGATGGGA 59.100 61.111 0.00 0.00 0.00 4.37
3347 5697 2.586079 CGCCGCTACACAGATGGG 60.586 66.667 0.00 0.00 0.00 4.00
3348 5698 3.264897 GCGCCGCTACACAGATGG 61.265 66.667 0.00 0.00 0.00 3.51
3349 5699 3.264897 GGCGCCGCTACACAGATG 61.265 66.667 12.58 0.00 0.00 2.90
3350 5700 3.432051 GAGGCGCCGCTACACAGAT 62.432 63.158 24.06 0.00 0.00 2.90
3351 5701 4.129737 GAGGCGCCGCTACACAGA 62.130 66.667 24.06 0.00 0.00 3.41
3352 5702 4.135153 AGAGGCGCCGCTACACAG 62.135 66.667 32.46 0.00 0.00 3.66
3353 5703 4.129737 GAGAGGCGCCGCTACACA 62.130 66.667 33.40 0.00 0.00 3.72
3354 5704 4.874977 GGAGAGGCGCCGCTACAC 62.875 72.222 34.62 22.58 0.00 2.90
3366 5716 3.478274 GAGCAGCCAGGGGGAGAG 61.478 72.222 0.00 0.00 35.59 3.20
3379 5729 4.687215 GGTCCTGCAGCACGAGCA 62.687 66.667 16.04 2.10 45.49 4.26
3381 5731 4.767255 GGGGTCCTGCAGCACGAG 62.767 72.222 8.66 0.00 0.00 4.18
3401 5751 4.147587 CTGGGGCCATGGGAAGGG 62.148 72.222 15.13 0.00 0.00 3.95
3402 5752 2.363292 GATCTGGGGCCATGGGAAGG 62.363 65.000 15.13 0.00 0.00 3.46
3403 5753 1.152368 GATCTGGGGCCATGGGAAG 59.848 63.158 15.13 0.00 0.00 3.46
3404 5754 2.756042 CGATCTGGGGCCATGGGAA 61.756 63.158 15.13 0.00 0.00 3.97
3405 5755 3.170672 CGATCTGGGGCCATGGGA 61.171 66.667 15.13 1.44 0.00 4.37
3406 5756 4.275508 CCGATCTGGGGCCATGGG 62.276 72.222 15.13 0.00 0.00 4.00
3407 5757 2.475371 GATCCGATCTGGGGCCATGG 62.475 65.000 7.63 7.63 38.76 3.66
3408 5758 1.002868 GATCCGATCTGGGGCCATG 60.003 63.158 4.39 0.00 38.76 3.66
3409 5759 1.151943 AGATCCGATCTGGGGCCAT 60.152 57.895 10.23 0.00 38.44 4.40
3410 5760 2.286905 AGATCCGATCTGGGGCCA 59.713 61.111 10.23 0.00 38.44 5.36
3417 5767 4.654412 GCGCGCCAGATCCGATCT 62.654 66.667 23.24 4.96 41.15 2.75
3439 5789 3.787001 CTGGTCGGGGGAAGAGCC 61.787 72.222 0.00 0.00 35.45 4.70
3440 5790 4.475135 GCTGGTCGGGGGAAGAGC 62.475 72.222 0.00 0.00 36.72 4.09
3441 5791 2.685380 AGCTGGTCGGGGGAAGAG 60.685 66.667 0.00 0.00 0.00 2.85
3442 5792 3.003173 CAGCTGGTCGGGGGAAGA 61.003 66.667 5.57 0.00 0.00 2.87
3443 5793 2.895424 AACAGCTGGTCGGGGGAAG 61.895 63.158 19.93 0.00 0.00 3.46
3444 5794 2.852075 AACAGCTGGTCGGGGGAA 60.852 61.111 19.93 0.00 0.00 3.97
3445 5795 3.636231 CAACAGCTGGTCGGGGGA 61.636 66.667 19.93 0.00 0.00 4.81
3454 5804 3.918253 TAAGGGGCCGCAACAGCTG 62.918 63.158 23.39 13.48 0.00 4.24
3455 5805 3.646715 TAAGGGGCCGCAACAGCT 61.647 61.111 23.39 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.