Multiple sequence alignment - TraesCS7D01G367700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G367700 chr7D 100.000 3287 0 0 1 3287 475872784 475876070 0.000000e+00 6071.0
1 TraesCS7D01G367700 chr7D 90.566 265 25 0 2563 2827 393095007 393095271 5.220000e-93 351.0
2 TraesCS7D01G367700 chr7B 96.260 909 27 5 1658 2565 500170350 500171252 0.000000e+00 1483.0
3 TraesCS7D01G367700 chr7B 94.153 821 21 9 1 811 500168336 500169139 0.000000e+00 1225.0
4 TraesCS7D01G367700 chr7B 97.414 348 8 1 965 1312 500169604 500169950 2.820000e-165 592.0
5 TraesCS7D01G367700 chr7B 93.050 259 15 1 2825 3080 500171252 500171510 3.100000e-100 375.0
6 TraesCS7D01G367700 chr7B 86.538 208 12 7 3083 3287 500171482 500171676 7.140000e-52 215.0
7 TraesCS7D01G367700 chr7B 80.800 250 14 6 1305 1528 500169969 500170210 7.300000e-37 165.0
8 TraesCS7D01G367700 chr7A 85.615 1432 97 49 68 1419 520061575 520060173 0.000000e+00 1402.0
9 TraesCS7D01G367700 chr7A 89.921 883 69 13 1555 2433 520060118 520059252 0.000000e+00 1120.0
10 TraesCS7D01G367700 chr7A 90.706 269 22 2 2564 2829 247641071 247640803 4.030000e-94 355.0
11 TraesCS7D01G367700 chr2B 94.077 287 17 0 2100 2386 365397 365111 1.400000e-118 436.0
12 TraesCS7D01G367700 chr2B 91.176 272 18 4 1739 2010 365673 365408 6.700000e-97 364.0
13 TraesCS7D01G367700 chr2B 91.288 264 23 0 2564 2827 58798102 58798365 8.670000e-96 361.0
14 TraesCS7D01G367700 chr4B 92.366 262 20 0 2566 2827 593126873 593126612 1.110000e-99 374.0
15 TraesCS7D01G367700 chr4B 91.450 269 21 1 2564 2830 372356956 372356688 5.180000e-98 368.0
16 TraesCS7D01G367700 chr4B 81.517 211 30 6 1008 1212 662458930 662458723 7.300000e-37 165.0
17 TraesCS7D01G367700 chr4A 90.458 262 24 1 2566 2827 648141668 648141408 8.730000e-91 344.0
18 TraesCS7D01G367700 chr2D 89.591 269 27 1 2560 2827 36802952 36803220 1.130000e-89 340.0
19 TraesCS7D01G367700 chr1D 90.189 265 21 1 2566 2830 285318583 285318324 1.130000e-89 340.0
20 TraesCS7D01G367700 chr1A 88.129 278 32 1 2564 2841 370544581 370544857 2.450000e-86 329.0
21 TraesCS7D01G367700 chrUn 83.163 196 29 4 1018 1212 109048714 109048522 3.370000e-40 176.0
22 TraesCS7D01G367700 chr3B 82.759 203 30 4 1014 1212 799860596 799860395 3.370000e-40 176.0
23 TraesCS7D01G367700 chr3B 82.292 192 32 2 1029 1219 412595968 412596158 7.300000e-37 165.0
24 TraesCS7D01G367700 chr3B 74.930 355 69 18 1695 2047 799982907 799982571 9.510000e-31 145.0
25 TraesCS7D01G367700 chr3D 82.292 192 32 2 1029 1219 308985786 308985596 7.300000e-37 165.0
26 TraesCS7D01G367700 chr3A 82.292 192 32 2 1029 1219 428570226 428570036 7.300000e-37 165.0
27 TraesCS7D01G367700 chr5A 82.051 195 31 4 1019 1212 704338348 704338539 2.620000e-36 163.0
28 TraesCS7D01G367700 chr5B 93.750 48 3 0 1747 1794 452124481 452124434 4.550000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G367700 chr7D 475872784 475876070 3286 False 6071.000000 6071 100.000000 1 3287 1 chr7D.!!$F2 3286
1 TraesCS7D01G367700 chr7B 500168336 500171676 3340 False 675.833333 1483 91.369167 1 3287 6 chr7B.!!$F1 3286
2 TraesCS7D01G367700 chr7A 520059252 520061575 2323 True 1261.000000 1402 87.768000 68 2433 2 chr7A.!!$R2 2365
3 TraesCS7D01G367700 chr2B 365111 365673 562 True 400.000000 436 92.626500 1739 2386 2 chr2B.!!$R1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
407 426 0.038890 AGCAGCCCTTCTCCCTTTTC 59.961 55.000 0.0 0.0 0.0 2.29 F
539 565 0.107508 CCTGACTGCGAATCACCCAT 60.108 55.000 0.0 0.0 0.0 4.00 F
1503 1944 1.225368 CGATGTTACACGCACGCAC 60.225 57.895 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 2074 0.250513 ACTTTTCGCCTCTAGCCCTG 59.749 55.0 0.0 0.0 38.78 4.45 R
1596 2075 0.250513 CACTTTTCGCCTCTAGCCCT 59.749 55.0 0.0 0.0 38.78 5.19 R
3205 3691 0.034863 TTTAAGGGATGGCCGGTGAC 60.035 55.0 1.9 0.0 33.83 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.890894 CGGCGGAGGAAGAAGAAGA 59.109 57.895 0.00 0.00 0.00 2.87
36 37 0.246635 CGGCGGAGGAAGAAGAAGAA 59.753 55.000 0.00 0.00 0.00 2.52
37 38 1.737363 CGGCGGAGGAAGAAGAAGAAG 60.737 57.143 0.00 0.00 0.00 2.85
228 232 4.105553 GGTGGGCCTAACCGGGAC 62.106 72.222 6.32 0.00 40.62 4.46
301 314 1.613925 TGCGTACTAGCATCCAGATCC 59.386 52.381 0.00 0.00 42.92 3.36
302 315 1.613925 GCGTACTAGCATCCAGATCCA 59.386 52.381 0.00 0.00 37.05 3.41
303 316 2.352225 GCGTACTAGCATCCAGATCCAG 60.352 54.545 0.00 0.00 37.05 3.86
307 320 0.390492 TAGCATCCAGATCCAGCACG 59.610 55.000 0.00 0.00 0.00 5.34
355 368 3.607078 GCGAAACTGTAGTCTTGCCAAAG 60.607 47.826 0.00 0.00 34.45 2.77
360 373 0.438830 GTAGTCTTGCCAAAGCGACG 59.561 55.000 0.00 0.00 44.31 5.12
407 426 0.038890 AGCAGCCCTTCTCCCTTTTC 59.961 55.000 0.00 0.00 0.00 2.29
539 565 0.107508 CCTGACTGCGAATCACCCAT 60.108 55.000 0.00 0.00 0.00 4.00
573 599 2.232941 TCCGAGTTTTCTATGCCGAAGT 59.767 45.455 0.00 0.00 0.00 3.01
781 846 4.394712 CACCTGTCGCCACCTCCC 62.395 72.222 0.00 0.00 0.00 4.30
843 908 3.800531 GCTTATAAAACTAGCCACCGGA 58.199 45.455 9.46 0.00 0.00 5.14
844 909 3.808174 GCTTATAAAACTAGCCACCGGAG 59.192 47.826 9.46 0.00 0.00 4.63
867 932 3.403057 CACGTTCACAGACCGGCG 61.403 66.667 0.00 0.00 0.00 6.46
872 937 1.982395 TTCACAGACCGGCGGATCT 60.982 57.895 35.78 26.57 0.00 2.75
891 956 4.445545 GCCTTCTTTGGCGACGCG 62.446 66.667 14.61 3.53 43.74 6.01
923 988 4.022849 CCCTTTTTCTGTAGCACCTTTGAG 60.023 45.833 0.00 0.00 0.00 3.02
941 1006 3.483954 GCTTTATGCTCTGCTCCCA 57.516 52.632 0.00 0.00 38.95 4.37
1227 1609 5.078411 ACACCTATGTCAGTCAGTTGATC 57.922 43.478 0.00 0.00 31.55 2.92
1241 1623 3.193691 CAGTTGATCCCTACTCGTTCTGT 59.806 47.826 0.00 0.00 0.00 3.41
1255 1637 2.675844 CGTTCTGTTGGTTCTGTTGTCA 59.324 45.455 0.00 0.00 0.00 3.58
1303 1689 3.303001 GCGCTCTGCTTATCTTGATTCAC 60.303 47.826 0.00 0.00 41.73 3.18
1312 1698 5.984926 GCTTATCTTGATTCACAGAGAGAGG 59.015 44.000 0.00 0.00 0.00 3.69
1424 1865 3.822167 GGTTGGGGTGTCGATTTCTTTTA 59.178 43.478 0.00 0.00 0.00 1.52
1426 1867 4.627284 TGGGGTGTCGATTTCTTTTAGA 57.373 40.909 0.00 0.00 0.00 2.10
1427 1868 4.975631 TGGGGTGTCGATTTCTTTTAGAA 58.024 39.130 0.00 0.00 31.28 2.10
1428 1869 5.378332 TGGGGTGTCGATTTCTTTTAGAAA 58.622 37.500 4.51 4.51 46.89 2.52
1429 1870 5.239963 TGGGGTGTCGATTTCTTTTAGAAAC 59.760 40.000 4.14 0.00 45.83 2.78
1430 1871 5.239963 GGGGTGTCGATTTCTTTTAGAAACA 59.760 40.000 4.14 0.00 45.83 2.83
1431 1872 6.238814 GGGGTGTCGATTTCTTTTAGAAACAA 60.239 38.462 4.14 0.00 45.83 2.83
1456 1897 1.496060 AACTGGCTGGGATGTCGATA 58.504 50.000 0.00 0.00 0.00 2.92
1475 1916 6.913132 GTCGATATATGGACATATGAAGACCG 59.087 42.308 19.56 8.40 35.85 4.79
1494 1935 3.483665 GTGGCGCGCGATGTTACA 61.484 61.111 37.18 18.00 0.00 2.41
1496 1937 4.553101 GGCGCGCGATGTTACACG 62.553 66.667 37.18 1.31 0.00 4.49
1503 1944 1.225368 CGATGTTACACGCACGCAC 60.225 57.895 0.00 0.00 0.00 5.34
1504 1945 1.856688 GATGTTACACGCACGCACA 59.143 52.632 0.00 0.00 0.00 4.57
1528 1969 5.048083 ACTTCTGAATATTTTGCGCCTTTGA 60.048 36.000 4.18 0.00 0.00 2.69
1530 1983 5.777802 TCTGAATATTTTGCGCCTTTGAAA 58.222 33.333 4.18 0.00 0.00 2.69
1540 1993 2.286772 GCGCCTTTGAAAGAGTTCGAAA 60.287 45.455 6.49 0.00 36.82 3.46
1554 2029 6.331061 AGAGTTCGAAATAGTACGCATTTCT 58.669 36.000 22.63 11.67 39.29 2.52
1557 2032 9.390795 GAGTTCGAAATAGTACGCATTTCTATA 57.609 33.333 22.63 12.30 39.29 1.31
1571 2046 5.971202 GCATTTCTATATGTTCGTGGTTTGG 59.029 40.000 0.00 0.00 0.00 3.28
1614 2093 0.250513 CAGGGCTAGAGGCGAAAAGT 59.749 55.000 0.00 0.00 42.94 2.66
1638 2117 4.681483 GCAGATTTAGTTTCACAAAGTGCC 59.319 41.667 0.00 0.00 32.98 5.01
1641 2120 4.545823 TTTAGTTTCACAAAGTGCCGAG 57.454 40.909 0.00 0.00 32.98 4.63
1645 2124 0.106708 TTCACAAAGTGCCGAGAGCT 59.893 50.000 0.00 0.00 44.23 4.09
1646 2125 0.106708 TCACAAAGTGCCGAGAGCTT 59.893 50.000 0.00 0.00 44.23 3.74
1647 2126 0.514691 CACAAAGTGCCGAGAGCTTC 59.485 55.000 0.00 0.00 44.23 3.86
1649 2128 0.321122 CAAAGTGCCGAGAGCTTCCT 60.321 55.000 0.00 0.00 44.23 3.36
1651 2130 0.321122 AAGTGCCGAGAGCTTCCTTG 60.321 55.000 0.00 0.00 44.23 3.61
1652 2131 2.046892 TGCCGAGAGCTTCCTTGC 60.047 61.111 0.00 0.00 44.23 4.01
1653 2132 2.046892 GCCGAGAGCTTCCTTGCA 60.047 61.111 0.00 0.00 38.99 4.08
1678 2157 2.865670 GCACTAGATTCTGCCCTGATCG 60.866 54.545 0.00 0.00 0.00 3.69
1691 2170 3.564225 GCCCTGATCGAATTATTTTCCGT 59.436 43.478 0.00 0.00 0.00 4.69
2310 2792 0.250124 TGACGCCCGACAGAAATTGT 60.250 50.000 0.00 0.00 44.55 2.71
2337 2819 1.227999 GCGTGTGCTAACTGCTTGGA 61.228 55.000 0.00 0.00 43.37 3.53
2366 2848 2.783284 CGAATTATTGGCATTGCGTGAC 59.217 45.455 1.91 0.00 35.91 3.67
2386 2868 2.292267 CTCTGCCATTTTGACCGCTAT 58.708 47.619 0.00 0.00 0.00 2.97
2422 2904 2.430465 CTTGTTCCAGGGATGACACAG 58.570 52.381 0.00 0.00 0.00 3.66
2520 3003 1.804748 GGAGGCTACGGTCAACAAAAG 59.195 52.381 0.00 0.00 0.00 2.27
2527 3010 1.202098 ACGGTCAACAAAAGTTCGTGC 60.202 47.619 0.00 0.00 0.00 5.34
2533 3016 3.039405 CAACAAAAGTTCGTGCGCATTA 58.961 40.909 15.91 0.84 0.00 1.90
2541 3024 1.067693 TCGTGCGCATTACAAGTCAG 58.932 50.000 15.91 0.00 0.00 3.51
2548 3031 3.674753 GCGCATTACAAGTCAGCAAAAAT 59.325 39.130 0.30 0.00 0.00 1.82
2554 3037 8.801913 GCATTACAAGTCAGCAAAAATAATCTC 58.198 33.333 0.00 0.00 0.00 2.75
2576 3059 8.637196 TCTCTTTGATTCTTAGACTAGTCACA 57.363 34.615 24.44 9.25 0.00 3.58
2577 3060 9.078990 TCTCTTTGATTCTTAGACTAGTCACAA 57.921 33.333 24.44 15.86 0.00 3.33
2578 3061 9.868277 CTCTTTGATTCTTAGACTAGTCACAAT 57.132 33.333 24.44 14.97 0.00 2.71
2579 3062 9.645059 TCTTTGATTCTTAGACTAGTCACAATG 57.355 33.333 24.44 16.67 0.00 2.82
2580 3063 8.777865 TTTGATTCTTAGACTAGTCACAATGG 57.222 34.615 24.44 7.66 0.00 3.16
2581 3064 6.878317 TGATTCTTAGACTAGTCACAATGGG 58.122 40.000 24.44 7.04 0.00 4.00
2582 3065 6.440647 TGATTCTTAGACTAGTCACAATGGGT 59.559 38.462 24.44 4.04 0.00 4.51
2583 3066 7.618117 TGATTCTTAGACTAGTCACAATGGGTA 59.382 37.037 24.44 3.05 0.00 3.69
2584 3067 6.770746 TCTTAGACTAGTCACAATGGGTAC 57.229 41.667 24.44 0.00 0.00 3.34
2585 3068 6.491383 TCTTAGACTAGTCACAATGGGTACT 58.509 40.000 24.44 2.07 0.00 2.73
2586 3069 7.636579 TCTTAGACTAGTCACAATGGGTACTA 58.363 38.462 24.44 1.11 0.00 1.82
2587 3070 8.111545 TCTTAGACTAGTCACAATGGGTACTAA 58.888 37.037 24.44 8.71 0.00 2.24
2588 3071 6.527057 AGACTAGTCACAATGGGTACTAAC 57.473 41.667 24.44 0.00 0.00 2.34
2589 3072 6.254522 AGACTAGTCACAATGGGTACTAACT 58.745 40.000 24.44 0.00 0.00 2.24
2590 3073 6.724905 AGACTAGTCACAATGGGTACTAACTT 59.275 38.462 24.44 0.00 0.00 2.66
2591 3074 7.892241 AGACTAGTCACAATGGGTACTAACTTA 59.108 37.037 24.44 0.00 0.00 2.24
2592 3075 8.064336 ACTAGTCACAATGGGTACTAACTTAG 57.936 38.462 0.00 0.00 0.00 2.18
2593 3076 7.892241 ACTAGTCACAATGGGTACTAACTTAGA 59.108 37.037 2.65 0.00 0.00 2.10
2594 3077 7.735326 AGTCACAATGGGTACTAACTTAGAT 57.265 36.000 2.65 0.00 0.00 1.98
2595 3078 8.147244 AGTCACAATGGGTACTAACTTAGATT 57.853 34.615 2.65 0.00 0.00 2.40
2596 3079 9.263446 AGTCACAATGGGTACTAACTTAGATTA 57.737 33.333 2.65 0.00 0.00 1.75
2597 3080 9.530633 GTCACAATGGGTACTAACTTAGATTAG 57.469 37.037 2.65 0.00 38.03 1.73
2598 3081 9.263446 TCACAATGGGTACTAACTTAGATTAGT 57.737 33.333 2.65 10.38 45.33 2.24
2629 3112 8.812972 TGCATATTTTACTACCTCTATAGTGGG 58.187 37.037 21.82 16.23 36.09 4.61
2630 3113 8.258708 GCATATTTTACTACCTCTATAGTGGGG 58.741 40.741 21.82 16.35 36.09 4.96
2631 3114 9.543231 CATATTTTACTACCTCTATAGTGGGGA 57.457 37.037 21.82 11.28 36.09 4.81
2632 3115 9.771140 ATATTTTACTACCTCTATAGTGGGGAG 57.229 37.037 21.82 20.04 36.09 4.30
2633 3116 6.603110 TTTACTACCTCTATAGTGGGGAGT 57.397 41.667 24.72 24.72 36.09 3.85
2634 3117 7.712142 TTTACTACCTCTATAGTGGGGAGTA 57.288 40.000 23.32 23.32 36.09 2.59
2635 3118 7.712142 TTACTACCTCTATAGTGGGGAGTAA 57.288 40.000 28.26 28.26 38.03 2.24
2636 3119 5.951204 ACTACCTCTATAGTGGGGAGTAAC 58.049 45.833 22.09 0.00 34.02 2.50
2637 3120 4.894252 ACCTCTATAGTGGGGAGTAACA 57.106 45.455 21.82 0.00 33.22 2.41
2638 3121 5.420215 ACCTCTATAGTGGGGAGTAACAT 57.580 43.478 21.82 0.00 33.22 2.71
2639 3122 6.541264 ACCTCTATAGTGGGGAGTAACATA 57.459 41.667 21.82 0.00 33.22 2.29
2640 3123 7.117331 ACCTCTATAGTGGGGAGTAACATAT 57.883 40.000 21.82 0.00 33.22 1.78
2641 3124 8.240881 ACCTCTATAGTGGGGAGTAACATATA 57.759 38.462 21.82 0.00 33.22 0.86
2642 3125 8.857997 ACCTCTATAGTGGGGAGTAACATATAT 58.142 37.037 21.82 0.00 33.22 0.86
2643 3126 9.137459 CCTCTATAGTGGGGAGTAACATATATG 57.863 40.741 11.29 11.29 0.00 1.78
2644 3127 9.702253 CTCTATAGTGGGGAGTAACATATATGT 57.298 37.037 12.75 12.75 44.20 2.29
2645 3128 9.475620 TCTATAGTGGGGAGTAACATATATGTG 57.524 37.037 18.94 0.00 41.61 3.21
2646 3129 5.825593 AGTGGGGAGTAACATATATGTGG 57.174 43.478 18.94 0.00 41.61 4.17
2647 3130 5.224441 AGTGGGGAGTAACATATATGTGGT 58.776 41.667 18.94 7.17 41.61 4.16
2648 3131 5.071788 AGTGGGGAGTAACATATATGTGGTG 59.928 44.000 18.94 0.00 41.61 4.17
2649 3132 4.972568 TGGGGAGTAACATATATGTGGTGT 59.027 41.667 18.94 6.10 41.61 4.16
2650 3133 5.071250 TGGGGAGTAACATATATGTGGTGTC 59.929 44.000 18.94 12.58 41.61 3.67
2651 3134 5.071250 GGGGAGTAACATATATGTGGTGTCA 59.929 44.000 18.94 0.00 41.61 3.58
2652 3135 6.239887 GGGGAGTAACATATATGTGGTGTCAT 60.240 42.308 18.94 4.32 41.61 3.06
2653 3136 6.650807 GGGAGTAACATATATGTGGTGTCATG 59.349 42.308 18.94 0.00 41.61 3.07
2654 3137 6.147821 GGAGTAACATATATGTGGTGTCATGC 59.852 42.308 18.94 5.42 41.61 4.06
2655 3138 6.591001 AGTAACATATATGTGGTGTCATGCA 58.409 36.000 18.94 0.00 41.61 3.96
2656 3139 7.053498 AGTAACATATATGTGGTGTCATGCAA 58.947 34.615 18.94 0.00 41.61 4.08
2657 3140 5.756195 ACATATATGTGGTGTCATGCAAC 57.244 39.130 17.60 0.00 40.03 4.17
2658 3141 5.192176 ACATATATGTGGTGTCATGCAACA 58.808 37.500 17.60 4.08 43.58 3.33
2663 3146 2.049888 TGGTGTCATGCAACACTTCA 57.950 45.000 18.55 8.56 46.96 3.02
2664 3147 2.585330 TGGTGTCATGCAACACTTCAT 58.415 42.857 18.55 0.00 46.96 2.57
2665 3148 2.957680 TGGTGTCATGCAACACTTCATT 59.042 40.909 18.55 0.00 46.96 2.57
2666 3149 3.384146 TGGTGTCATGCAACACTTCATTT 59.616 39.130 18.55 0.00 46.96 2.32
2667 3150 4.582240 TGGTGTCATGCAACACTTCATTTA 59.418 37.500 18.55 0.00 46.96 1.40
2668 3151 5.243507 TGGTGTCATGCAACACTTCATTTAT 59.756 36.000 18.55 0.00 46.96 1.40
2669 3152 6.158598 GGTGTCATGCAACACTTCATTTATT 58.841 36.000 18.55 0.00 46.96 1.40
2670 3153 7.040132 TGGTGTCATGCAACACTTCATTTATTA 60.040 33.333 18.55 0.00 46.96 0.98
2671 3154 7.485913 GGTGTCATGCAACACTTCATTTATTAG 59.514 37.037 18.55 0.00 46.96 1.73
2672 3155 7.485913 GTGTCATGCAACACTTCATTTATTAGG 59.514 37.037 13.31 0.00 44.90 2.69
2673 3156 7.176515 TGTCATGCAACACTTCATTTATTAGGT 59.823 33.333 0.00 0.00 0.00 3.08
2674 3157 8.028938 GTCATGCAACACTTCATTTATTAGGTT 58.971 33.333 0.00 0.00 0.00 3.50
2675 3158 8.028354 TCATGCAACACTTCATTTATTAGGTTG 58.972 33.333 0.00 0.00 37.88 3.77
2676 3159 7.283625 TGCAACACTTCATTTATTAGGTTGT 57.716 32.000 0.00 0.00 37.34 3.32
2677 3160 8.397575 TGCAACACTTCATTTATTAGGTTGTA 57.602 30.769 0.00 0.00 37.34 2.41
2678 3161 8.511321 TGCAACACTTCATTTATTAGGTTGTAG 58.489 33.333 0.00 0.00 37.34 2.74
2679 3162 8.726988 GCAACACTTCATTTATTAGGTTGTAGA 58.273 33.333 0.00 0.00 37.34 2.59
2682 3165 9.654663 ACACTTCATTTATTAGGTTGTAGACTC 57.345 33.333 0.00 0.00 0.00 3.36
2683 3166 9.653287 CACTTCATTTATTAGGTTGTAGACTCA 57.347 33.333 0.00 0.00 0.00 3.41
2690 3173 9.871238 TTTATTAGGTTGTAGACTCATCTTGTC 57.129 33.333 0.00 0.00 36.29 3.18
2691 3174 7.726033 ATTAGGTTGTAGACTCATCTTGTCT 57.274 36.000 0.00 0.00 45.48 3.41
2692 3175 7.540474 TTAGGTTGTAGACTCATCTTGTCTT 57.460 36.000 1.67 0.00 41.45 3.01
2693 3176 5.788450 AGGTTGTAGACTCATCTTGTCTTG 58.212 41.667 1.67 0.00 41.45 3.02
2694 3177 5.540337 AGGTTGTAGACTCATCTTGTCTTGA 59.460 40.000 1.67 0.00 41.45 3.02
2695 3178 6.212388 AGGTTGTAGACTCATCTTGTCTTGAT 59.788 38.462 1.67 0.00 41.45 2.57
2696 3179 7.397476 AGGTTGTAGACTCATCTTGTCTTGATA 59.603 37.037 1.67 0.00 41.45 2.15
2697 3180 8.200792 GGTTGTAGACTCATCTTGTCTTGATAT 58.799 37.037 1.67 0.00 41.45 1.63
2698 3181 9.029243 GTTGTAGACTCATCTTGTCTTGATATG 57.971 37.037 1.67 0.00 41.45 1.78
2699 3182 8.298729 TGTAGACTCATCTTGTCTTGATATGT 57.701 34.615 1.67 0.00 41.45 2.29
2700 3183 8.193438 TGTAGACTCATCTTGTCTTGATATGTG 58.807 37.037 1.67 0.00 41.45 3.21
2701 3184 7.180322 AGACTCATCTTGTCTTGATATGTGT 57.820 36.000 0.00 0.00 41.45 3.72
2702 3185 7.040494 AGACTCATCTTGTCTTGATATGTGTG 58.960 38.462 0.00 0.00 41.45 3.82
2703 3186 6.939622 ACTCATCTTGTCTTGATATGTGTGA 58.060 36.000 0.00 0.00 0.00 3.58
2704 3187 7.563020 ACTCATCTTGTCTTGATATGTGTGAT 58.437 34.615 0.00 0.00 0.00 3.06
2705 3188 7.494952 ACTCATCTTGTCTTGATATGTGTGATG 59.505 37.037 0.00 0.00 0.00 3.07
2706 3189 7.333323 TCATCTTGTCTTGATATGTGTGATGT 58.667 34.615 0.00 0.00 32.21 3.06
2707 3190 7.825761 TCATCTTGTCTTGATATGTGTGATGTT 59.174 33.333 0.00 0.00 32.21 2.71
2708 3191 9.101655 CATCTTGTCTTGATATGTGTGATGTTA 57.898 33.333 0.00 0.00 0.00 2.41
2709 3192 8.479313 TCTTGTCTTGATATGTGTGATGTTAC 57.521 34.615 0.00 0.00 0.00 2.50
2710 3193 8.093927 TCTTGTCTTGATATGTGTGATGTTACA 58.906 33.333 0.00 0.00 0.00 2.41
2711 3194 7.832503 TGTCTTGATATGTGTGATGTTACAG 57.167 36.000 0.00 0.00 0.00 2.74
2712 3195 7.386059 TGTCTTGATATGTGTGATGTTACAGT 58.614 34.615 0.00 0.00 0.00 3.55
2713 3196 8.527810 TGTCTTGATATGTGTGATGTTACAGTA 58.472 33.333 0.00 0.00 0.00 2.74
2714 3197 9.366216 GTCTTGATATGTGTGATGTTACAGTAA 57.634 33.333 0.00 0.00 0.00 2.24
2715 3198 9.366216 TCTTGATATGTGTGATGTTACAGTAAC 57.634 33.333 15.58 15.58 39.11 2.50
2716 3199 9.371136 CTTGATATGTGTGATGTTACAGTAACT 57.629 33.333 21.56 9.41 39.38 2.24
2723 3206 9.634163 TGTGTGATGTTACAGTAACTAGTTATG 57.366 33.333 21.56 17.28 39.38 1.90
2724 3207 9.635520 GTGTGATGTTACAGTAACTAGTTATGT 57.364 33.333 21.56 21.00 39.38 2.29
2743 3226 4.329462 TGTTACAACATGCCCCTTTTTC 57.671 40.909 0.00 0.00 33.17 2.29
2744 3227 3.070302 TGTTACAACATGCCCCTTTTTCC 59.930 43.478 0.00 0.00 33.17 3.13
2745 3228 2.101640 ACAACATGCCCCTTTTTCCT 57.898 45.000 0.00 0.00 0.00 3.36
2746 3229 1.970640 ACAACATGCCCCTTTTTCCTC 59.029 47.619 0.00 0.00 0.00 3.71
2747 3230 1.969923 CAACATGCCCCTTTTTCCTCA 59.030 47.619 0.00 0.00 0.00 3.86
2748 3231 2.568509 CAACATGCCCCTTTTTCCTCAT 59.431 45.455 0.00 0.00 0.00 2.90
2749 3232 2.906568 ACATGCCCCTTTTTCCTCATT 58.093 42.857 0.00 0.00 0.00 2.57
2750 3233 4.059773 ACATGCCCCTTTTTCCTCATTA 57.940 40.909 0.00 0.00 0.00 1.90
2751 3234 4.424842 ACATGCCCCTTTTTCCTCATTAA 58.575 39.130 0.00 0.00 0.00 1.40
2752 3235 5.032170 ACATGCCCCTTTTTCCTCATTAAT 58.968 37.500 0.00 0.00 0.00 1.40
2753 3236 5.488561 ACATGCCCCTTTTTCCTCATTAATT 59.511 36.000 0.00 0.00 0.00 1.40
2754 3237 6.671779 ACATGCCCCTTTTTCCTCATTAATTA 59.328 34.615 0.00 0.00 0.00 1.40
2755 3238 6.538945 TGCCCCTTTTTCCTCATTAATTAC 57.461 37.500 0.00 0.00 0.00 1.89
2756 3239 6.260663 TGCCCCTTTTTCCTCATTAATTACT 58.739 36.000 0.00 0.00 0.00 2.24
2757 3240 6.728632 TGCCCCTTTTTCCTCATTAATTACTT 59.271 34.615 0.00 0.00 0.00 2.24
2758 3241 7.041721 GCCCCTTTTTCCTCATTAATTACTTG 58.958 38.462 0.00 0.00 0.00 3.16
2759 3242 7.041721 CCCCTTTTTCCTCATTAATTACTTGC 58.958 38.462 0.00 0.00 0.00 4.01
2760 3243 7.041721 CCCTTTTTCCTCATTAATTACTTGCC 58.958 38.462 0.00 0.00 0.00 4.52
2761 3244 7.310361 CCCTTTTTCCTCATTAATTACTTGCCA 60.310 37.037 0.00 0.00 0.00 4.92
2762 3245 7.545615 CCTTTTTCCTCATTAATTACTTGCCAC 59.454 37.037 0.00 0.00 0.00 5.01
2763 3246 7.531857 TTTTCCTCATTAATTACTTGCCACA 57.468 32.000 0.00 0.00 0.00 4.17
2764 3247 7.716799 TTTCCTCATTAATTACTTGCCACAT 57.283 32.000 0.00 0.00 0.00 3.21
2765 3248 6.942532 TCCTCATTAATTACTTGCCACATC 57.057 37.500 0.00 0.00 0.00 3.06
2766 3249 6.422333 TCCTCATTAATTACTTGCCACATCA 58.578 36.000 0.00 0.00 0.00 3.07
2767 3250 7.062322 TCCTCATTAATTACTTGCCACATCAT 58.938 34.615 0.00 0.00 0.00 2.45
2768 3251 7.229306 TCCTCATTAATTACTTGCCACATCATC 59.771 37.037 0.00 0.00 0.00 2.92
2769 3252 7.230108 CCTCATTAATTACTTGCCACATCATCT 59.770 37.037 0.00 0.00 0.00 2.90
2770 3253 7.933396 TCATTAATTACTTGCCACATCATCTG 58.067 34.615 0.00 0.00 0.00 2.90
2771 3254 7.557358 TCATTAATTACTTGCCACATCATCTGT 59.443 33.333 0.00 0.00 39.20 3.41
2772 3255 7.701539 TTAATTACTTGCCACATCATCTGTT 57.298 32.000 0.00 0.00 35.29 3.16
2773 3256 6.594788 AATTACTTGCCACATCATCTGTTT 57.405 33.333 0.00 0.00 35.29 2.83
2774 3257 6.594788 ATTACTTGCCACATCATCTGTTTT 57.405 33.333 0.00 0.00 35.29 2.43
2775 3258 4.247267 ACTTGCCACATCATCTGTTTTG 57.753 40.909 0.00 0.00 35.29 2.44
2776 3259 2.728690 TGCCACATCATCTGTTTTGC 57.271 45.000 0.00 0.00 35.29 3.68
2777 3260 1.273048 TGCCACATCATCTGTTTTGCC 59.727 47.619 0.00 0.00 35.29 4.52
2778 3261 1.547372 GCCACATCATCTGTTTTGCCT 59.453 47.619 0.00 0.00 35.29 4.75
2779 3262 2.754552 GCCACATCATCTGTTTTGCCTA 59.245 45.455 0.00 0.00 35.29 3.93
2780 3263 3.181493 GCCACATCATCTGTTTTGCCTAG 60.181 47.826 0.00 0.00 35.29 3.02
2781 3264 4.264253 CCACATCATCTGTTTTGCCTAGA 58.736 43.478 0.00 0.00 35.29 2.43
2782 3265 4.334759 CCACATCATCTGTTTTGCCTAGAG 59.665 45.833 0.00 0.00 35.29 2.43
2783 3266 4.940046 CACATCATCTGTTTTGCCTAGAGT 59.060 41.667 0.00 0.00 35.29 3.24
2784 3267 5.413833 CACATCATCTGTTTTGCCTAGAGTT 59.586 40.000 0.00 0.00 35.29 3.01
2785 3268 5.413833 ACATCATCTGTTTTGCCTAGAGTTG 59.586 40.000 0.00 0.00 32.90 3.16
2786 3269 4.973168 TCATCTGTTTTGCCTAGAGTTGT 58.027 39.130 0.00 0.00 0.00 3.32
2787 3270 4.756642 TCATCTGTTTTGCCTAGAGTTGTG 59.243 41.667 0.00 0.00 0.00 3.33
2788 3271 4.150897 TCTGTTTTGCCTAGAGTTGTGT 57.849 40.909 0.00 0.00 0.00 3.72
2789 3272 3.876914 TCTGTTTTGCCTAGAGTTGTGTG 59.123 43.478 0.00 0.00 0.00 3.82
2790 3273 3.876914 CTGTTTTGCCTAGAGTTGTGTGA 59.123 43.478 0.00 0.00 0.00 3.58
2791 3274 4.460263 TGTTTTGCCTAGAGTTGTGTGAT 58.540 39.130 0.00 0.00 0.00 3.06
2792 3275 4.275689 TGTTTTGCCTAGAGTTGTGTGATG 59.724 41.667 0.00 0.00 0.00 3.07
2793 3276 3.769739 TTGCCTAGAGTTGTGTGATGT 57.230 42.857 0.00 0.00 0.00 3.06
2794 3277 3.769739 TGCCTAGAGTTGTGTGATGTT 57.230 42.857 0.00 0.00 0.00 2.71
2795 3278 4.882842 TGCCTAGAGTTGTGTGATGTTA 57.117 40.909 0.00 0.00 0.00 2.41
2796 3279 4.566004 TGCCTAGAGTTGTGTGATGTTAC 58.434 43.478 0.00 0.00 0.00 2.50
2797 3280 3.933332 GCCTAGAGTTGTGTGATGTTACC 59.067 47.826 0.00 0.00 0.00 2.85
2798 3281 4.562757 GCCTAGAGTTGTGTGATGTTACCA 60.563 45.833 0.00 0.00 0.00 3.25
2799 3282 4.929808 CCTAGAGTTGTGTGATGTTACCAC 59.070 45.833 0.00 0.00 35.23 4.16
2800 3283 3.740115 AGAGTTGTGTGATGTTACCACC 58.260 45.455 0.00 0.00 33.80 4.61
2801 3284 3.391296 AGAGTTGTGTGATGTTACCACCT 59.609 43.478 0.00 0.00 33.80 4.00
2802 3285 4.591498 AGAGTTGTGTGATGTTACCACCTA 59.409 41.667 0.00 0.00 33.80 3.08
2803 3286 5.248477 AGAGTTGTGTGATGTTACCACCTAT 59.752 40.000 0.00 0.00 33.80 2.57
2804 3287 5.245531 AGTTGTGTGATGTTACCACCTATG 58.754 41.667 0.00 0.00 33.80 2.23
2805 3288 4.901197 TGTGTGATGTTACCACCTATGT 57.099 40.909 0.00 0.00 33.80 2.29
2806 3289 6.014070 AGTTGTGTGATGTTACCACCTATGTA 60.014 38.462 0.00 0.00 33.80 2.29
2807 3290 6.361768 TGTGTGATGTTACCACCTATGTAA 57.638 37.500 0.00 0.00 33.80 2.41
2808 3291 6.167685 TGTGTGATGTTACCACCTATGTAAC 58.832 40.000 6.40 6.40 45.23 2.50
2809 3292 6.014070 TGTGTGATGTTACCACCTATGTAACT 60.014 38.462 12.78 1.60 45.24 2.24
2810 3293 6.534079 GTGTGATGTTACCACCTATGTAACTC 59.466 42.308 12.78 9.06 45.24 3.01
2811 3294 6.439375 TGTGATGTTACCACCTATGTAACTCT 59.561 38.462 12.78 2.99 45.24 3.24
2812 3295 6.979238 GTGATGTTACCACCTATGTAACTCTC 59.021 42.308 12.78 10.28 45.24 3.20
2813 3296 6.666113 TGATGTTACCACCTATGTAACTCTCA 59.334 38.462 12.78 12.06 45.24 3.27
2814 3297 6.276832 TGTTACCACCTATGTAACTCTCAC 57.723 41.667 12.78 0.00 45.24 3.51
2815 3298 6.014647 TGTTACCACCTATGTAACTCTCACT 58.985 40.000 12.78 0.00 45.24 3.41
2816 3299 6.071560 TGTTACCACCTATGTAACTCTCACTG 60.072 42.308 12.78 0.00 45.24 3.66
2817 3300 4.417437 ACCACCTATGTAACTCTCACTGT 58.583 43.478 0.00 0.00 0.00 3.55
2818 3301 4.220821 ACCACCTATGTAACTCTCACTGTG 59.779 45.833 0.17 0.17 0.00 3.66
2819 3302 4.382040 CCACCTATGTAACTCTCACTGTGG 60.382 50.000 8.11 0.00 0.00 4.17
2820 3303 3.769844 ACCTATGTAACTCTCACTGTGGG 59.230 47.826 8.11 4.27 0.00 4.61
2821 3304 3.769844 CCTATGTAACTCTCACTGTGGGT 59.230 47.826 7.67 2.20 0.00 4.51
2822 3305 4.954202 CCTATGTAACTCTCACTGTGGGTA 59.046 45.833 7.67 0.00 0.00 3.69
2823 3306 5.421056 CCTATGTAACTCTCACTGTGGGTAA 59.579 44.000 7.67 0.00 0.00 2.85
2845 3328 3.714487 TAGGCCGCCTTTGGATGCC 62.714 63.158 19.35 8.23 39.94 4.40
2853 3336 1.032014 CCTTTGGATGCCCGTAATGG 58.968 55.000 0.00 0.00 34.29 3.16
2870 3353 1.729881 GGCAGTGCCGATTTGGATC 59.270 57.895 20.55 0.00 39.62 3.36
2882 3365 3.827722 GATTTGGATCGGTATTCCCCAA 58.172 45.455 0.00 0.00 33.09 4.12
2889 3372 0.621609 CGGTATTCCCCAACCCTCAA 59.378 55.000 0.00 0.00 31.68 3.02
2917 3400 6.707161 TCCATGTTTGGTTGTAGTTGTACTAC 59.293 38.462 9.49 9.49 45.42 2.73
2974 3460 2.031870 GGTGACTGAAAAAGCTTGGGT 58.968 47.619 0.00 0.00 0.00 4.51
2992 3478 3.181490 TGGGTCAGTCGATTCATTACGAG 60.181 47.826 0.00 0.00 39.16 4.18
3004 3490 0.107897 ATTACGAGCCGTTGGATGCA 60.108 50.000 5.57 0.00 41.54 3.96
3034 3520 5.028549 TGGCTAGATCAGATTCTTCAACC 57.971 43.478 0.00 0.00 0.00 3.77
3037 3523 5.070313 GGCTAGATCAGATTCTTCAACCTCT 59.930 44.000 0.00 0.00 0.00 3.69
3051 3537 5.871396 TCAACCTCTGAAGTGTCTTTACT 57.129 39.130 0.00 0.00 0.00 2.24
3052 3538 5.601662 TCAACCTCTGAAGTGTCTTTACTG 58.398 41.667 0.00 0.00 0.00 2.74
3053 3539 3.996480 ACCTCTGAAGTGTCTTTACTGC 58.004 45.455 0.00 0.00 0.00 4.40
3054 3540 3.643792 ACCTCTGAAGTGTCTTTACTGCT 59.356 43.478 0.00 0.00 0.00 4.24
3055 3541 4.241681 CCTCTGAAGTGTCTTTACTGCTC 58.758 47.826 0.00 0.00 0.00 4.26
3056 3542 3.902150 TCTGAAGTGTCTTTACTGCTCG 58.098 45.455 0.00 0.00 0.00 5.03
3057 3543 2.404215 TGAAGTGTCTTTACTGCTCGC 58.596 47.619 0.00 0.00 0.00 5.03
3058 3544 1.727335 GAAGTGTCTTTACTGCTCGCC 59.273 52.381 0.00 0.00 0.00 5.54
3059 3545 0.969894 AGTGTCTTTACTGCTCGCCT 59.030 50.000 0.00 0.00 0.00 5.52
3060 3546 1.344763 AGTGTCTTTACTGCTCGCCTT 59.655 47.619 0.00 0.00 0.00 4.35
3061 3547 1.727335 GTGTCTTTACTGCTCGCCTTC 59.273 52.381 0.00 0.00 0.00 3.46
3062 3548 1.618837 TGTCTTTACTGCTCGCCTTCT 59.381 47.619 0.00 0.00 0.00 2.85
3063 3549 2.823747 TGTCTTTACTGCTCGCCTTCTA 59.176 45.455 0.00 0.00 0.00 2.10
3064 3550 3.180613 GTCTTTACTGCTCGCCTTCTAC 58.819 50.000 0.00 0.00 0.00 2.59
3065 3551 2.165845 TCTTTACTGCTCGCCTTCTACC 59.834 50.000 0.00 0.00 0.00 3.18
3066 3552 1.848652 TTACTGCTCGCCTTCTACCT 58.151 50.000 0.00 0.00 0.00 3.08
3067 3553 1.390565 TACTGCTCGCCTTCTACCTC 58.609 55.000 0.00 0.00 0.00 3.85
3068 3554 0.612174 ACTGCTCGCCTTCTACCTCA 60.612 55.000 0.00 0.00 0.00 3.86
3069 3555 0.532573 CTGCTCGCCTTCTACCTCAA 59.467 55.000 0.00 0.00 0.00 3.02
3070 3556 0.973632 TGCTCGCCTTCTACCTCAAA 59.026 50.000 0.00 0.00 0.00 2.69
3071 3557 1.337823 TGCTCGCCTTCTACCTCAAAC 60.338 52.381 0.00 0.00 0.00 2.93
3072 3558 2.007547 GCTCGCCTTCTACCTCAAACC 61.008 57.143 0.00 0.00 0.00 3.27
3073 3559 0.245539 TCGCCTTCTACCTCAAACCG 59.754 55.000 0.00 0.00 0.00 4.44
3074 3560 1.359459 CGCCTTCTACCTCAAACCGC 61.359 60.000 0.00 0.00 0.00 5.68
3075 3561 1.025113 GCCTTCTACCTCAAACCGCC 61.025 60.000 0.00 0.00 0.00 6.13
3076 3562 0.392595 CCTTCTACCTCAAACCGCCC 60.393 60.000 0.00 0.00 0.00 6.13
3077 3563 0.323629 CTTCTACCTCAAACCGCCCA 59.676 55.000 0.00 0.00 0.00 5.36
3078 3564 0.766131 TTCTACCTCAAACCGCCCAA 59.234 50.000 0.00 0.00 0.00 4.12
3079 3565 0.035739 TCTACCTCAAACCGCCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
3080 3566 0.036306 CTACCTCAAACCGCCCAACT 59.964 55.000 0.00 0.00 0.00 3.16
3081 3567 1.276989 CTACCTCAAACCGCCCAACTA 59.723 52.381 0.00 0.00 0.00 2.24
3111 3597 1.885163 CTACCTCGAACCGCCCAACT 61.885 60.000 0.00 0.00 0.00 3.16
3118 3604 0.953960 GAACCGCCCAACTACCACAG 60.954 60.000 0.00 0.00 0.00 3.66
3120 3606 2.746277 CGCCCAACTACCACAGCC 60.746 66.667 0.00 0.00 0.00 4.85
3130 3616 0.542467 TACCACAGCCTAACCGACCA 60.542 55.000 0.00 0.00 0.00 4.02
3165 3651 4.479993 GTGCCAGCCTCGCCATCT 62.480 66.667 0.00 0.00 0.00 2.90
3166 3652 4.166888 TGCCAGCCTCGCCATCTC 62.167 66.667 0.00 0.00 0.00 2.75
3200 3686 3.381983 AGCCGACCGTCATGCTGA 61.382 61.111 10.84 0.00 31.70 4.26
3201 3687 3.188786 GCCGACCGTCATGCTGAC 61.189 66.667 0.00 6.31 43.65 3.51
3222 3708 2.727392 CGTCACCGGCCATCCCTTA 61.727 63.158 0.00 0.00 0.00 2.69
3228 3714 1.613061 CGGCCATCCCTTAAACCCT 59.387 57.895 2.24 0.00 0.00 4.34
3272 3761 1.928567 CTGCACCCCCTCCCCTAAA 60.929 63.158 0.00 0.00 0.00 1.85
3282 3771 4.420891 CCCCCTCCCCTAAAATAAATACCA 59.579 45.833 0.00 0.00 0.00 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.300080 GCGCACCACACATTTGCTT 60.300 52.632 0.30 0.00 33.90 3.91
36 37 2.336088 GCGCACCACACATTTGCT 59.664 55.556 0.30 0.00 33.90 3.91
37 38 2.017783 CTGCGCACCACACATTTGC 61.018 57.895 5.66 0.00 0.00 3.68
162 163 4.477975 GACTGACGAGGGCGACGG 62.478 72.222 0.00 0.00 42.75 4.79
225 229 3.551407 GATGGCCCTCTCCCGTCC 61.551 72.222 0.00 0.00 33.22 4.79
226 230 3.917760 CGATGGCCCTCTCCCGTC 61.918 72.222 0.00 0.00 35.48 4.79
298 311 2.095059 GTCAAAATTCAGCGTGCTGGAT 60.095 45.455 20.78 15.60 43.69 3.41
299 312 1.266718 GTCAAAATTCAGCGTGCTGGA 59.733 47.619 20.78 13.82 43.75 3.86
300 313 1.689959 GTCAAAATTCAGCGTGCTGG 58.310 50.000 20.78 4.77 43.75 4.85
301 314 1.069973 TCGTCAAAATTCAGCGTGCTG 60.070 47.619 15.59 15.59 44.86 4.41
302 315 1.195448 CTCGTCAAAATTCAGCGTGCT 59.805 47.619 0.00 0.00 0.00 4.40
303 316 1.069906 ACTCGTCAAAATTCAGCGTGC 60.070 47.619 0.00 0.00 0.00 5.34
307 320 2.413371 GCCAGACTCGTCAAAATTCAGC 60.413 50.000 0.00 0.00 0.00 4.26
394 408 3.890674 CCGCGAAAAGGGAGAAGG 58.109 61.111 8.23 0.00 34.27 3.46
407 426 1.644786 GATTGGTTGAGTTCCCCGCG 61.645 60.000 0.00 0.00 0.00 6.46
481 507 2.061028 GGATTGTTTTTGCGAGCAAGG 58.939 47.619 10.52 0.00 37.24 3.61
573 599 2.221169 GCTGATTTGGTGCCATATCGA 58.779 47.619 14.02 0.00 37.26 3.59
781 846 2.184579 GGGAGAAAGAGACGGCGG 59.815 66.667 13.24 0.00 0.00 6.13
811 876 2.602746 TTTATAAGCCTGCCGCGCCT 62.603 55.000 0.00 0.00 44.76 5.52
841 906 2.737376 GTGAACGTGTCGGCCTCC 60.737 66.667 0.00 0.00 0.00 4.30
842 907 2.022129 CTGTGAACGTGTCGGCCTC 61.022 63.158 0.00 0.00 0.00 4.70
843 908 2.029073 CTGTGAACGTGTCGGCCT 59.971 61.111 0.00 0.00 0.00 5.19
844 909 2.028484 TCTGTGAACGTGTCGGCC 59.972 61.111 0.00 0.00 0.00 6.13
845 910 2.308039 GGTCTGTGAACGTGTCGGC 61.308 63.158 0.00 0.00 0.00 5.54
846 911 2.014554 CGGTCTGTGAACGTGTCGG 61.015 63.158 0.00 0.00 38.03 4.79
847 912 2.014554 CCGGTCTGTGAACGTGTCG 61.015 63.158 4.33 0.00 41.61 4.35
848 913 2.308039 GCCGGTCTGTGAACGTGTC 61.308 63.158 1.90 0.00 41.61 3.67
849 914 2.279918 GCCGGTCTGTGAACGTGT 60.280 61.111 1.90 0.00 41.61 4.49
897 962 3.756117 AGGTGCTACAGAAAAAGGGAAG 58.244 45.455 0.00 0.00 0.00 3.46
900 965 3.888930 TCAAAGGTGCTACAGAAAAAGGG 59.111 43.478 0.00 0.00 0.00 3.95
923 988 1.978454 ATGGGAGCAGAGCATAAAGC 58.022 50.000 0.00 0.00 46.19 3.51
932 997 6.560003 TCTTGATAAAGTAATGGGAGCAGA 57.440 37.500 0.00 0.00 0.00 4.26
935 1000 8.457238 AGATTTCTTGATAAAGTAATGGGAGC 57.543 34.615 0.00 0.00 0.00 4.70
1227 1609 2.299297 AGAACCAACAGAACGAGTAGGG 59.701 50.000 0.00 0.00 0.00 3.53
1241 1623 5.200483 AGAAGGAATTGACAACAGAACCAA 58.800 37.500 0.00 0.00 0.00 3.67
1255 1637 3.947834 CGGCTTAACATGGAGAAGGAATT 59.052 43.478 0.00 0.00 0.00 2.17
1303 1689 5.186797 ACTTGTACAGAAATCCCTCTCTCTG 59.813 44.000 0.00 0.00 40.92 3.35
1443 1884 5.604758 ATGTCCATATATCGACATCCCAG 57.395 43.478 17.30 0.00 44.48 4.45
1456 1897 3.258372 ACGCGGTCTTCATATGTCCATAT 59.742 43.478 12.47 0.00 34.50 1.78
1494 1935 0.880278 ATTCAGAAGTGTGCGTGCGT 60.880 50.000 0.00 0.00 0.00 5.24
1496 1937 3.747099 AATATTCAGAAGTGTGCGTGC 57.253 42.857 0.00 0.00 0.00 5.34
1498 1939 4.475944 GCAAAATATTCAGAAGTGTGCGT 58.524 39.130 0.00 0.00 0.00 5.24
1499 1940 3.539563 CGCAAAATATTCAGAAGTGTGCG 59.460 43.478 12.12 12.12 45.03 5.34
1503 1944 4.361451 AGGCGCAAAATATTCAGAAGTG 57.639 40.909 10.83 0.00 0.00 3.16
1504 1945 5.048083 TCAAAGGCGCAAAATATTCAGAAGT 60.048 36.000 10.83 0.00 0.00 3.01
1528 1969 6.963049 AATGCGTACTATTTCGAACTCTTT 57.037 33.333 0.00 0.00 0.00 2.52
1530 1983 6.331061 AGAAATGCGTACTATTTCGAACTCT 58.669 36.000 18.64 5.68 44.95 3.24
1540 1993 7.541091 CCACGAACATATAGAAATGCGTACTAT 59.459 37.037 9.47 9.47 28.71 2.12
1554 2029 4.223255 TGTCCTCCAAACCACGAACATATA 59.777 41.667 0.00 0.00 0.00 0.86
1557 2032 1.142060 TGTCCTCCAAACCACGAACAT 59.858 47.619 0.00 0.00 0.00 2.71
1571 2046 1.557443 CGTGCCACGTTCTTGTCCTC 61.557 60.000 9.53 0.00 36.74 3.71
1595 2074 0.250513 ACTTTTCGCCTCTAGCCCTG 59.749 55.000 0.00 0.00 38.78 4.45
1596 2075 0.250513 CACTTTTCGCCTCTAGCCCT 59.749 55.000 0.00 0.00 38.78 5.19
1614 2093 5.280945 GCACTTTGTGAAACTAAATCTGCA 58.719 37.500 1.52 0.00 38.04 4.41
1638 2117 0.795085 CAAGTGCAAGGAAGCTCTCG 59.205 55.000 0.00 0.00 37.36 4.04
1651 2130 1.399791 GGCAGAATCTAGTGCAAGTGC 59.600 52.381 5.53 0.00 41.75 4.40
1652 2131 2.012673 GGGCAGAATCTAGTGCAAGTG 58.987 52.381 5.53 0.00 41.75 3.16
1653 2132 1.912043 AGGGCAGAATCTAGTGCAAGT 59.088 47.619 5.53 0.00 41.75 3.16
1678 2157 6.322491 CCTGAGGTGAAACGGAAAATAATTC 58.678 40.000 0.00 0.00 38.12 2.17
1691 2170 1.374947 CGGAAGCCCTGAGGTGAAA 59.625 57.895 0.00 0.00 34.57 2.69
1965 2447 4.722700 TGCTTGGGCTTCCGCTCC 62.723 66.667 0.00 0.00 35.06 4.70
2366 2848 1.737838 TAGCGGTCAAAATGGCAGAG 58.262 50.000 0.00 0.00 0.00 3.35
2386 2868 3.237268 ACAAGGCAAACTGGGAACATA 57.763 42.857 0.00 0.00 41.51 2.29
2422 2904 5.288472 ACAGAGAAAACACGAATTTGCAAAC 59.712 36.000 15.41 1.46 0.00 2.93
2520 3003 1.193650 TGACTTGTAATGCGCACGAAC 59.806 47.619 14.90 12.21 0.00 3.95
2527 3010 6.926280 TTATTTTTGCTGACTTGTAATGCG 57.074 33.333 0.00 0.00 0.00 4.73
2533 3016 8.632679 TCAAAGAGATTATTTTTGCTGACTTGT 58.367 29.630 0.00 0.00 33.10 3.16
2554 3037 8.877779 CCATTGTGACTAGTCTAAGAATCAAAG 58.122 37.037 23.01 12.39 0.00 2.77
2564 3047 7.408543 AGTTAGTACCCATTGTGACTAGTCTA 58.591 38.462 23.01 10.02 0.00 2.59
2565 3048 6.254522 AGTTAGTACCCATTGTGACTAGTCT 58.745 40.000 23.01 0.19 0.00 3.24
2566 3049 6.527057 AGTTAGTACCCATTGTGACTAGTC 57.473 41.667 16.32 16.32 0.00 2.59
2567 3050 6.930068 AAGTTAGTACCCATTGTGACTAGT 57.070 37.500 0.00 0.00 0.00 2.57
2568 3051 8.289939 TCTAAGTTAGTACCCATTGTGACTAG 57.710 38.462 9.71 0.00 0.00 2.57
2569 3052 8.834004 ATCTAAGTTAGTACCCATTGTGACTA 57.166 34.615 9.71 0.00 0.00 2.59
2570 3053 7.735326 ATCTAAGTTAGTACCCATTGTGACT 57.265 36.000 9.71 0.00 0.00 3.41
2571 3054 9.530633 CTAATCTAAGTTAGTACCCATTGTGAC 57.469 37.037 9.71 0.00 0.00 3.67
2572 3055 9.263446 ACTAATCTAAGTTAGTACCCATTGTGA 57.737 33.333 9.71 0.00 41.74 3.58
2579 3062 9.473640 GCATGTTACTAATCTAAGTTAGTACCC 57.526 37.037 9.71 2.52 43.29 3.69
2603 3086 8.812972 CCCACTATAGAGGTAGTAAAATATGCA 58.187 37.037 14.29 0.00 33.29 3.96
2604 3087 8.258708 CCCCACTATAGAGGTAGTAAAATATGC 58.741 40.741 14.29 0.00 33.29 3.14
2605 3088 9.543231 TCCCCACTATAGAGGTAGTAAAATATG 57.457 37.037 14.29 0.00 33.29 1.78
2606 3089 9.771140 CTCCCCACTATAGAGGTAGTAAAATAT 57.229 37.037 14.29 0.00 33.29 1.28
2607 3090 8.740512 ACTCCCCACTATAGAGGTAGTAAAATA 58.259 37.037 14.29 0.00 33.29 1.40
2608 3091 7.602868 ACTCCCCACTATAGAGGTAGTAAAAT 58.397 38.462 14.29 0.00 33.29 1.82
2609 3092 6.989894 ACTCCCCACTATAGAGGTAGTAAAA 58.010 40.000 14.29 0.00 33.29 1.52
2610 3093 6.603110 ACTCCCCACTATAGAGGTAGTAAA 57.397 41.667 14.29 0.00 33.29 2.01
2611 3094 7.129349 TGTTACTCCCCACTATAGAGGTAGTAA 59.871 40.741 23.15 23.15 33.91 2.24
2612 3095 6.621098 TGTTACTCCCCACTATAGAGGTAGTA 59.379 42.308 17.42 17.42 33.29 1.82
2613 3096 5.434376 TGTTACTCCCCACTATAGAGGTAGT 59.566 44.000 18.82 18.82 35.34 2.73
2614 3097 5.950023 TGTTACTCCCCACTATAGAGGTAG 58.050 45.833 14.29 12.87 31.70 3.18
2615 3098 5.999987 TGTTACTCCCCACTATAGAGGTA 57.000 43.478 14.29 2.62 31.70 3.08
2616 3099 4.894252 TGTTACTCCCCACTATAGAGGT 57.106 45.455 14.29 0.00 31.70 3.85
2617 3100 9.137459 CATATATGTTACTCCCCACTATAGAGG 57.863 40.741 6.78 8.10 31.70 3.69
2618 3101 9.702253 ACATATATGTTACTCCCCACTATAGAG 57.298 37.037 12.75 0.00 37.90 2.43
2619 3102 9.475620 CACATATATGTTACTCCCCACTATAGA 57.524 37.037 15.85 0.00 39.39 1.98
2620 3103 8.696374 CCACATATATGTTACTCCCCACTATAG 58.304 40.741 15.85 0.00 39.39 1.31
2621 3104 8.181524 ACCACATATATGTTACTCCCCACTATA 58.818 37.037 15.85 0.00 39.39 1.31
2622 3105 7.023120 ACCACATATATGTTACTCCCCACTAT 58.977 38.462 15.85 0.00 39.39 2.12
2623 3106 6.269077 CACCACATATATGTTACTCCCCACTA 59.731 42.308 15.85 0.00 39.39 2.74
2624 3107 5.071788 CACCACATATATGTTACTCCCCACT 59.928 44.000 15.85 0.00 39.39 4.00
2625 3108 5.163237 ACACCACATATATGTTACTCCCCAC 60.163 44.000 15.85 0.00 39.39 4.61
2626 3109 4.972568 ACACCACATATATGTTACTCCCCA 59.027 41.667 15.85 0.00 39.39 4.96
2627 3110 5.071250 TGACACCACATATATGTTACTCCCC 59.929 44.000 15.85 3.66 39.39 4.81
2628 3111 6.169557 TGACACCACATATATGTTACTCCC 57.830 41.667 15.85 5.09 39.39 4.30
2629 3112 6.147821 GCATGACACCACATATATGTTACTCC 59.852 42.308 15.85 6.51 39.39 3.85
2630 3113 6.705825 TGCATGACACCACATATATGTTACTC 59.294 38.462 15.85 8.65 39.39 2.59
2631 3114 6.591001 TGCATGACACCACATATATGTTACT 58.409 36.000 15.85 0.00 39.39 2.24
2632 3115 6.859420 TGCATGACACCACATATATGTTAC 57.141 37.500 15.85 6.60 39.39 2.50
2633 3116 6.825721 TGTTGCATGACACCACATATATGTTA 59.174 34.615 15.85 0.00 39.39 2.41
2634 3117 5.651576 TGTTGCATGACACCACATATATGTT 59.348 36.000 15.85 1.38 39.39 2.71
2635 3118 5.066375 GTGTTGCATGACACCACATATATGT 59.934 40.000 12.75 12.75 41.13 2.29
2636 3119 5.513376 GTGTTGCATGACACCACATATATG 58.487 41.667 11.29 11.29 41.13 1.78
2637 3120 5.756195 GTGTTGCATGACACCACATATAT 57.244 39.130 10.05 0.00 41.13 0.86
2647 3130 7.176515 ACCTAATAAATGAAGTGTTGCATGACA 59.823 33.333 0.00 0.00 0.00 3.58
2648 3131 7.538575 ACCTAATAAATGAAGTGTTGCATGAC 58.461 34.615 0.00 0.00 0.00 3.06
2649 3132 7.701539 ACCTAATAAATGAAGTGTTGCATGA 57.298 32.000 0.00 0.00 0.00 3.07
2650 3133 7.814107 ACAACCTAATAAATGAAGTGTTGCATG 59.186 33.333 0.00 0.00 36.26 4.06
2651 3134 7.895759 ACAACCTAATAAATGAAGTGTTGCAT 58.104 30.769 0.00 0.00 36.26 3.96
2652 3135 7.283625 ACAACCTAATAAATGAAGTGTTGCA 57.716 32.000 0.00 0.00 36.26 4.08
2653 3136 8.726988 TCTACAACCTAATAAATGAAGTGTTGC 58.273 33.333 0.00 0.00 36.26 4.17
2656 3139 9.654663 GAGTCTACAACCTAATAAATGAAGTGT 57.345 33.333 0.00 0.00 0.00 3.55
2657 3140 9.653287 TGAGTCTACAACCTAATAAATGAAGTG 57.347 33.333 0.00 0.00 0.00 3.16
2664 3147 9.871238 GACAAGATGAGTCTACAACCTAATAAA 57.129 33.333 0.00 0.00 33.30 1.40
2665 3148 9.256228 AGACAAGATGAGTCTACAACCTAATAA 57.744 33.333 0.00 0.00 44.10 1.40
2666 3149 8.824756 AGACAAGATGAGTCTACAACCTAATA 57.175 34.615 0.00 0.00 44.10 0.98
2667 3150 7.726033 AGACAAGATGAGTCTACAACCTAAT 57.274 36.000 0.00 0.00 44.10 1.73
2668 3151 7.232737 TCAAGACAAGATGAGTCTACAACCTAA 59.767 37.037 0.00 0.00 45.11 2.69
2669 3152 6.719829 TCAAGACAAGATGAGTCTACAACCTA 59.280 38.462 0.00 0.00 45.11 3.08
2670 3153 5.540337 TCAAGACAAGATGAGTCTACAACCT 59.460 40.000 0.00 0.00 45.11 3.50
2671 3154 5.784177 TCAAGACAAGATGAGTCTACAACC 58.216 41.667 0.00 0.00 45.11 3.77
2672 3155 9.029243 CATATCAAGACAAGATGAGTCTACAAC 57.971 37.037 0.00 0.00 45.11 3.32
2673 3156 8.753133 ACATATCAAGACAAGATGAGTCTACAA 58.247 33.333 0.00 0.00 45.11 2.41
2674 3157 8.193438 CACATATCAAGACAAGATGAGTCTACA 58.807 37.037 0.00 0.00 45.11 2.74
2675 3158 8.194104 ACACATATCAAGACAAGATGAGTCTAC 58.806 37.037 0.00 0.00 45.11 2.59
2676 3159 8.193438 CACACATATCAAGACAAGATGAGTCTA 58.807 37.037 0.00 0.00 45.11 2.59
2678 3161 7.038048 TCACACATATCAAGACAAGATGAGTC 58.962 38.462 0.00 0.00 36.26 3.36
2679 3162 6.939622 TCACACATATCAAGACAAGATGAGT 58.060 36.000 0.00 0.00 0.00 3.41
2680 3163 7.494952 ACATCACACATATCAAGACAAGATGAG 59.505 37.037 0.00 0.00 34.73 2.90
2681 3164 7.333323 ACATCACACATATCAAGACAAGATGA 58.667 34.615 0.00 0.00 34.73 2.92
2682 3165 7.549615 ACATCACACATATCAAGACAAGATG 57.450 36.000 0.00 0.00 36.24 2.90
2683 3166 9.102757 GTAACATCACACATATCAAGACAAGAT 57.897 33.333 0.00 0.00 0.00 2.40
2684 3167 8.093927 TGTAACATCACACATATCAAGACAAGA 58.906 33.333 0.00 0.00 0.00 3.02
2685 3168 8.255394 TGTAACATCACACATATCAAGACAAG 57.745 34.615 0.00 0.00 0.00 3.16
2686 3169 7.877612 ACTGTAACATCACACATATCAAGACAA 59.122 33.333 0.00 0.00 0.00 3.18
2687 3170 7.386059 ACTGTAACATCACACATATCAAGACA 58.614 34.615 0.00 0.00 0.00 3.41
2688 3171 7.834068 ACTGTAACATCACACATATCAAGAC 57.166 36.000 0.00 0.00 0.00 3.01
2689 3172 9.366216 GTTACTGTAACATCACACATATCAAGA 57.634 33.333 22.30 0.00 38.52 3.02
2690 3173 9.371136 AGTTACTGTAACATCACACATATCAAG 57.629 33.333 27.12 0.00 41.07 3.02
2697 3180 9.634163 CATAACTAGTTACTGTAACATCACACA 57.366 33.333 27.12 10.36 41.07 3.72
2698 3181 9.635520 ACATAACTAGTTACTGTAACATCACAC 57.364 33.333 27.12 4.72 41.07 3.82
2722 3205 3.070302 GGAAAAAGGGGCATGTTGTAACA 59.930 43.478 0.00 0.00 44.06 2.41
2723 3206 3.323691 AGGAAAAAGGGGCATGTTGTAAC 59.676 43.478 0.00 0.00 0.00 2.50
2724 3207 3.576550 GAGGAAAAAGGGGCATGTTGTAA 59.423 43.478 0.00 0.00 0.00 2.41
2725 3208 3.161866 GAGGAAAAAGGGGCATGTTGTA 58.838 45.455 0.00 0.00 0.00 2.41
2726 3209 1.970640 GAGGAAAAAGGGGCATGTTGT 59.029 47.619 0.00 0.00 0.00 3.32
2727 3210 1.969923 TGAGGAAAAAGGGGCATGTTG 59.030 47.619 0.00 0.00 0.00 3.33
2728 3211 2.397044 TGAGGAAAAAGGGGCATGTT 57.603 45.000 0.00 0.00 0.00 2.71
2729 3212 2.629017 ATGAGGAAAAAGGGGCATGT 57.371 45.000 0.00 0.00 0.00 3.21
2730 3213 5.619132 ATTAATGAGGAAAAAGGGGCATG 57.381 39.130 0.00 0.00 0.00 4.06
2731 3214 6.902974 AGTAATTAATGAGGAAAAAGGGGCAT 59.097 34.615 0.00 0.00 0.00 4.40
2732 3215 6.260663 AGTAATTAATGAGGAAAAAGGGGCA 58.739 36.000 0.00 0.00 0.00 5.36
2733 3216 6.791867 AGTAATTAATGAGGAAAAAGGGGC 57.208 37.500 0.00 0.00 0.00 5.80
2734 3217 7.041721 GCAAGTAATTAATGAGGAAAAAGGGG 58.958 38.462 4.19 0.00 0.00 4.79
2735 3218 7.041721 GGCAAGTAATTAATGAGGAAAAAGGG 58.958 38.462 4.19 0.00 0.00 3.95
2736 3219 7.545615 GTGGCAAGTAATTAATGAGGAAAAAGG 59.454 37.037 0.00 0.00 0.00 3.11
2737 3220 8.087750 TGTGGCAAGTAATTAATGAGGAAAAAG 58.912 33.333 0.00 0.00 0.00 2.27
2738 3221 7.957002 TGTGGCAAGTAATTAATGAGGAAAAA 58.043 30.769 0.00 0.00 0.00 1.94
2739 3222 7.531857 TGTGGCAAGTAATTAATGAGGAAAA 57.468 32.000 0.00 0.00 0.00 2.29
2740 3223 7.395772 TGATGTGGCAAGTAATTAATGAGGAAA 59.604 33.333 0.00 0.00 0.00 3.13
2741 3224 6.889177 TGATGTGGCAAGTAATTAATGAGGAA 59.111 34.615 0.00 0.00 0.00 3.36
2742 3225 6.422333 TGATGTGGCAAGTAATTAATGAGGA 58.578 36.000 0.00 0.00 0.00 3.71
2743 3226 6.698008 TGATGTGGCAAGTAATTAATGAGG 57.302 37.500 0.00 0.00 0.00 3.86
2744 3227 8.074370 CAGATGATGTGGCAAGTAATTAATGAG 58.926 37.037 0.00 0.00 0.00 2.90
2745 3228 7.557358 ACAGATGATGTGGCAAGTAATTAATGA 59.443 33.333 0.00 0.00 41.91 2.57
2746 3229 7.709947 ACAGATGATGTGGCAAGTAATTAATG 58.290 34.615 0.00 0.00 41.91 1.90
2747 3230 7.886629 ACAGATGATGTGGCAAGTAATTAAT 57.113 32.000 0.00 0.00 41.91 1.40
2748 3231 7.701539 AACAGATGATGTGGCAAGTAATTAA 57.298 32.000 0.00 0.00 43.00 1.40
2749 3232 7.701539 AAACAGATGATGTGGCAAGTAATTA 57.298 32.000 0.00 0.00 43.00 1.40
2750 3233 6.594788 AAACAGATGATGTGGCAAGTAATT 57.405 33.333 0.00 0.00 43.00 1.40
2751 3234 6.392354 CAAAACAGATGATGTGGCAAGTAAT 58.608 36.000 0.00 0.00 43.00 1.89
2752 3235 5.771469 CAAAACAGATGATGTGGCAAGTAA 58.229 37.500 0.00 0.00 43.00 2.24
2753 3236 4.321156 GCAAAACAGATGATGTGGCAAGTA 60.321 41.667 0.00 0.00 43.00 2.24
2754 3237 3.553508 GCAAAACAGATGATGTGGCAAGT 60.554 43.478 0.00 0.00 43.00 3.16
2755 3238 2.991190 GCAAAACAGATGATGTGGCAAG 59.009 45.455 0.00 0.00 43.00 4.01
2756 3239 2.288948 GGCAAAACAGATGATGTGGCAA 60.289 45.455 2.47 0.00 43.00 4.52
2757 3240 1.273048 GGCAAAACAGATGATGTGGCA 59.727 47.619 2.47 0.00 43.00 4.92
2758 3241 1.547372 AGGCAAAACAGATGATGTGGC 59.453 47.619 0.00 0.00 43.00 5.01
2759 3242 4.264253 TCTAGGCAAAACAGATGATGTGG 58.736 43.478 0.00 0.00 43.00 4.17
2760 3243 4.940046 ACTCTAGGCAAAACAGATGATGTG 59.060 41.667 0.00 0.00 43.00 3.21
2761 3244 5.171339 ACTCTAGGCAAAACAGATGATGT 57.829 39.130 0.00 0.00 46.97 3.06
2762 3245 5.413833 ACAACTCTAGGCAAAACAGATGATG 59.586 40.000 0.00 0.00 0.00 3.07
2763 3246 5.413833 CACAACTCTAGGCAAAACAGATGAT 59.586 40.000 0.00 0.00 0.00 2.45
2764 3247 4.756642 CACAACTCTAGGCAAAACAGATGA 59.243 41.667 0.00 0.00 0.00 2.92
2765 3248 4.516698 ACACAACTCTAGGCAAAACAGATG 59.483 41.667 0.00 0.00 0.00 2.90
2766 3249 4.516698 CACACAACTCTAGGCAAAACAGAT 59.483 41.667 0.00 0.00 0.00 2.90
2767 3250 3.876914 CACACAACTCTAGGCAAAACAGA 59.123 43.478 0.00 0.00 0.00 3.41
2768 3251 3.876914 TCACACAACTCTAGGCAAAACAG 59.123 43.478 0.00 0.00 0.00 3.16
2769 3252 3.879998 TCACACAACTCTAGGCAAAACA 58.120 40.909 0.00 0.00 0.00 2.83
2770 3253 4.275936 ACATCACACAACTCTAGGCAAAAC 59.724 41.667 0.00 0.00 0.00 2.43
2771 3254 4.460263 ACATCACACAACTCTAGGCAAAA 58.540 39.130 0.00 0.00 0.00 2.44
2772 3255 4.085357 ACATCACACAACTCTAGGCAAA 57.915 40.909 0.00 0.00 0.00 3.68
2773 3256 3.769739 ACATCACACAACTCTAGGCAA 57.230 42.857 0.00 0.00 0.00 4.52
2774 3257 3.769739 AACATCACACAACTCTAGGCA 57.230 42.857 0.00 0.00 0.00 4.75
2775 3258 3.933332 GGTAACATCACACAACTCTAGGC 59.067 47.826 0.00 0.00 0.00 3.93
2776 3259 5.147330 TGGTAACATCACACAACTCTAGG 57.853 43.478 0.00 0.00 46.17 3.02
2792 3275 6.071503 ACAGTGAGAGTTACATAGGTGGTAAC 60.072 42.308 0.00 7.21 46.85 2.50
2793 3276 6.014647 ACAGTGAGAGTTACATAGGTGGTAA 58.985 40.000 0.00 0.00 0.00 2.85
2794 3277 5.417894 CACAGTGAGAGTTACATAGGTGGTA 59.582 44.000 0.00 0.00 0.00 3.25
2795 3278 4.220821 CACAGTGAGAGTTACATAGGTGGT 59.779 45.833 0.00 0.00 0.00 4.16
2796 3279 4.382040 CCACAGTGAGAGTTACATAGGTGG 60.382 50.000 0.62 0.00 0.00 4.61
2797 3280 4.382040 CCCACAGTGAGAGTTACATAGGTG 60.382 50.000 0.62 0.00 0.00 4.00
2798 3281 3.769844 CCCACAGTGAGAGTTACATAGGT 59.230 47.826 0.62 0.00 0.00 3.08
2799 3282 3.769844 ACCCACAGTGAGAGTTACATAGG 59.230 47.826 0.62 0.00 0.00 2.57
2800 3283 6.525578 TTACCCACAGTGAGAGTTACATAG 57.474 41.667 0.62 0.00 0.00 2.23
2801 3284 6.895756 AGATTACCCACAGTGAGAGTTACATA 59.104 38.462 0.62 0.00 0.00 2.29
2802 3285 5.721960 AGATTACCCACAGTGAGAGTTACAT 59.278 40.000 0.62 0.00 0.00 2.29
2803 3286 5.084519 AGATTACCCACAGTGAGAGTTACA 58.915 41.667 0.62 0.00 0.00 2.41
2804 3287 5.662674 AGATTACCCACAGTGAGAGTTAC 57.337 43.478 0.62 0.00 0.00 2.50
2805 3288 6.380274 CCTAAGATTACCCACAGTGAGAGTTA 59.620 42.308 0.62 0.00 0.00 2.24
2806 3289 5.187967 CCTAAGATTACCCACAGTGAGAGTT 59.812 44.000 0.62 0.00 0.00 3.01
2807 3290 4.712337 CCTAAGATTACCCACAGTGAGAGT 59.288 45.833 0.62 0.00 0.00 3.24
2808 3291 4.442192 GCCTAAGATTACCCACAGTGAGAG 60.442 50.000 0.62 0.00 0.00 3.20
2809 3292 3.451178 GCCTAAGATTACCCACAGTGAGA 59.549 47.826 0.62 0.00 0.00 3.27
2810 3293 3.432326 GGCCTAAGATTACCCACAGTGAG 60.432 52.174 0.62 0.00 0.00 3.51
2811 3294 2.504175 GGCCTAAGATTACCCACAGTGA 59.496 50.000 0.62 0.00 0.00 3.41
2812 3295 2.741878 CGGCCTAAGATTACCCACAGTG 60.742 54.545 0.00 0.00 0.00 3.66
2813 3296 1.485066 CGGCCTAAGATTACCCACAGT 59.515 52.381 0.00 0.00 0.00 3.55
2814 3297 1.810412 GCGGCCTAAGATTACCCACAG 60.810 57.143 0.00 0.00 0.00 3.66
2815 3298 0.179468 GCGGCCTAAGATTACCCACA 59.821 55.000 0.00 0.00 0.00 4.17
2816 3299 0.534427 GGCGGCCTAAGATTACCCAC 60.534 60.000 12.87 0.00 0.00 4.61
2817 3300 0.693092 AGGCGGCCTAAGATTACCCA 60.693 55.000 22.47 0.00 28.47 4.51
2818 3301 0.472898 AAGGCGGCCTAAGATTACCC 59.527 55.000 24.16 0.00 31.13 3.69
2819 3302 1.947456 CAAAGGCGGCCTAAGATTACC 59.053 52.381 24.16 0.00 31.13 2.85
2820 3303 1.947456 CCAAAGGCGGCCTAAGATTAC 59.053 52.381 24.16 0.00 31.13 1.89
2821 3304 1.841277 TCCAAAGGCGGCCTAAGATTA 59.159 47.619 24.16 3.22 31.13 1.75
2822 3305 0.623723 TCCAAAGGCGGCCTAAGATT 59.376 50.000 24.16 10.15 31.13 2.40
2823 3306 0.846693 ATCCAAAGGCGGCCTAAGAT 59.153 50.000 24.16 20.23 31.13 2.40
2866 3349 0.109913 GGGTTGGGGAATACCGATCC 59.890 60.000 0.00 0.00 38.01 3.36
2870 3353 0.621609 TTGAGGGTTGGGGAATACCG 59.378 55.000 0.00 0.00 41.60 4.02
2882 3365 3.586429 ACCAAACATGGAAATTGAGGGT 58.414 40.909 1.10 0.00 0.00 4.34
2889 3372 6.478512 ACAACTACAACCAAACATGGAAAT 57.521 33.333 1.10 0.00 0.00 2.17
2917 3400 4.897670 AGCCAATCCCTTCCATTTTCTATG 59.102 41.667 0.00 0.00 0.00 2.23
2974 3460 2.540973 CGGCTCGTAATGAATCGACTGA 60.541 50.000 0.00 0.00 32.65 3.41
2992 3478 1.953559 TCTATCTTGCATCCAACGGC 58.046 50.000 0.00 0.00 0.00 5.68
3004 3490 8.669055 AAGAATCTGATCTAGCCATCTATCTT 57.331 34.615 0.00 0.00 0.00 2.40
3034 3520 3.917380 CGAGCAGTAAAGACACTTCAGAG 59.083 47.826 0.00 0.00 0.00 3.35
3037 3523 2.404215 GCGAGCAGTAAAGACACTTCA 58.596 47.619 0.00 0.00 0.00 3.02
3041 3527 1.727335 GAAGGCGAGCAGTAAAGACAC 59.273 52.381 0.00 0.00 0.00 3.67
3051 3537 0.973632 TTTGAGGTAGAAGGCGAGCA 59.026 50.000 0.00 0.00 0.00 4.26
3052 3538 1.360820 GTTTGAGGTAGAAGGCGAGC 58.639 55.000 0.00 0.00 0.00 5.03
3053 3539 1.736032 CGGTTTGAGGTAGAAGGCGAG 60.736 57.143 0.00 0.00 0.00 5.03
3054 3540 0.245539 CGGTTTGAGGTAGAAGGCGA 59.754 55.000 0.00 0.00 0.00 5.54
3055 3541 1.359459 GCGGTTTGAGGTAGAAGGCG 61.359 60.000 0.00 0.00 0.00 5.52
3056 3542 1.025113 GGCGGTTTGAGGTAGAAGGC 61.025 60.000 0.00 0.00 0.00 4.35
3057 3543 0.392595 GGGCGGTTTGAGGTAGAAGG 60.393 60.000 0.00 0.00 0.00 3.46
3058 3544 0.323629 TGGGCGGTTTGAGGTAGAAG 59.676 55.000 0.00 0.00 0.00 2.85
3059 3545 0.766131 TTGGGCGGTTTGAGGTAGAA 59.234 50.000 0.00 0.00 0.00 2.10
3060 3546 0.035739 GTTGGGCGGTTTGAGGTAGA 59.964 55.000 0.00 0.00 0.00 2.59
3061 3547 0.036306 AGTTGGGCGGTTTGAGGTAG 59.964 55.000 0.00 0.00 0.00 3.18
3062 3548 1.350071 TAGTTGGGCGGTTTGAGGTA 58.650 50.000 0.00 0.00 0.00 3.08
3063 3549 0.696501 ATAGTTGGGCGGTTTGAGGT 59.303 50.000 0.00 0.00 0.00 3.85
3064 3550 1.094785 CATAGTTGGGCGGTTTGAGG 58.905 55.000 0.00 0.00 0.00 3.86
3065 3551 0.451783 GCATAGTTGGGCGGTTTGAG 59.548 55.000 0.00 0.00 0.00 3.02
3066 3552 0.037590 AGCATAGTTGGGCGGTTTGA 59.962 50.000 0.00 0.00 34.54 2.69
3067 3553 0.451783 GAGCATAGTTGGGCGGTTTG 59.548 55.000 0.00 0.00 34.54 2.93
3068 3554 0.037590 TGAGCATAGTTGGGCGGTTT 59.962 50.000 0.00 0.00 34.54 3.27
3069 3555 0.676782 GTGAGCATAGTTGGGCGGTT 60.677 55.000 0.00 0.00 34.54 4.44
3070 3556 1.078426 GTGAGCATAGTTGGGCGGT 60.078 57.895 0.00 0.00 34.54 5.68
3071 3557 1.819632 GGTGAGCATAGTTGGGCGG 60.820 63.158 0.00 0.00 34.54 6.13
3072 3558 0.392998 AAGGTGAGCATAGTTGGGCG 60.393 55.000 0.00 0.00 34.54 6.13
3073 3559 1.065126 AGAAGGTGAGCATAGTTGGGC 60.065 52.381 0.00 0.00 0.00 5.36
3074 3560 3.432326 GGTAGAAGGTGAGCATAGTTGGG 60.432 52.174 0.00 0.00 0.00 4.12
3075 3561 3.452627 AGGTAGAAGGTGAGCATAGTTGG 59.547 47.826 0.00 0.00 0.00 3.77
3076 3562 4.688021 GAGGTAGAAGGTGAGCATAGTTG 58.312 47.826 0.00 0.00 0.00 3.16
3077 3563 3.381908 CGAGGTAGAAGGTGAGCATAGTT 59.618 47.826 0.00 0.00 0.00 2.24
3078 3564 2.952978 CGAGGTAGAAGGTGAGCATAGT 59.047 50.000 0.00 0.00 0.00 2.12
3079 3565 3.215151 TCGAGGTAGAAGGTGAGCATAG 58.785 50.000 0.00 0.00 0.00 2.23
3080 3566 3.292492 TCGAGGTAGAAGGTGAGCATA 57.708 47.619 0.00 0.00 0.00 3.14
3081 3567 2.145397 TCGAGGTAGAAGGTGAGCAT 57.855 50.000 0.00 0.00 0.00 3.79
3111 3597 0.542467 TGGTCGGTTAGGCTGTGGTA 60.542 55.000 0.00 0.00 0.00 3.25
3130 3616 3.982241 GGGACCGTCGTTGACCGT 61.982 66.667 0.00 0.00 37.94 4.83
3161 3647 3.089874 TTGGGGGAGGGCGAGATG 61.090 66.667 0.00 0.00 0.00 2.90
3162 3648 3.090532 GTTGGGGGAGGGCGAGAT 61.091 66.667 0.00 0.00 0.00 2.75
3205 3691 0.034863 TTTAAGGGATGGCCGGTGAC 60.035 55.000 1.90 0.00 33.83 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.