Multiple sequence alignment - TraesCS7D01G367300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G367300 chr7D 100.000 3060 0 0 1 3060 475187231 475184172 0.000000e+00 5651.0
1 TraesCS7D01G367300 chr7B 90.586 2252 136 38 3 2228 498971061 498968860 0.000000e+00 2915.0
2 TraesCS7D01G367300 chr7B 96.825 63 2 0 2251 2313 498968864 498968802 4.170000e-19 106.0
3 TraesCS7D01G367300 chr7B 92.754 69 5 0 2992 3060 498965750 498965682 1.940000e-17 100.0
4 TraesCS7D01G367300 chr7B 95.455 44 2 0 2334 2377 565578453 565578496 1.520000e-08 71.3
5 TraesCS7D01G367300 chr7A 90.769 1495 94 20 856 2333 520832242 520833709 0.000000e+00 1956.0
6 TraesCS7D01G367300 chr7A 79.685 699 99 27 6 687 520798835 520799507 5.980000e-127 464.0
7 TraesCS7D01G367300 chr7A 82.439 410 48 14 2380 2780 520836380 520836774 1.360000e-88 337.0
8 TraesCS7D01G367300 chr3B 96.528 144 5 0 54 197 32495897 32496040 3.940000e-59 239.0
9 TraesCS7D01G367300 chr3B 96.528 144 5 0 54 197 32564771 32564914 3.940000e-59 239.0
10 TraesCS7D01G367300 chr6B 97.674 43 1 0 2335 2377 402904197 402904239 1.180000e-09 75.0
11 TraesCS7D01G367300 chr5B 97.674 43 1 0 2336 2378 139339079 139339121 1.180000e-09 75.0
12 TraesCS7D01G367300 chr5D 97.619 42 1 0 2336 2377 487403594 487403553 4.230000e-09 73.1
13 TraesCS7D01G367300 chr3D 92.157 51 3 1 2328 2377 333321769 333321819 1.520000e-08 71.3
14 TraesCS7D01G367300 chrUn 95.349 43 2 0 2336 2378 38566476 38566434 5.470000e-08 69.4
15 TraesCS7D01G367300 chrUn 95.349 43 2 0 2336 2378 440757281 440757323 5.470000e-08 69.4
16 TraesCS7D01G367300 chr4A 93.478 46 2 1 2332 2377 643707356 643707400 1.970000e-07 67.6
17 TraesCS7D01G367300 chr4A 93.478 46 2 1 2332 2377 643803218 643803262 1.970000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G367300 chr7D 475184172 475187231 3059 True 5651.000000 5651 100.000000 1 3060 1 chr7D.!!$R1 3059
1 TraesCS7D01G367300 chr7B 498965682 498971061 5379 True 1040.333333 2915 93.388333 3 3060 3 chr7B.!!$R1 3057
2 TraesCS7D01G367300 chr7A 520832242 520836774 4532 False 1146.500000 1956 86.604000 856 2780 2 chr7A.!!$F2 1924
3 TraesCS7D01G367300 chr7A 520798835 520799507 672 False 464.000000 464 79.685000 6 687 1 chr7A.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
232 234 0.108019 ACTTGTTCACCTTCCCGACC 59.892 55.0 0.0 0.0 0.0 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 2138 1.203523 GTTTCGTATTGCATTGCCCCA 59.796 47.619 6.12 0.0 0.0 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
232 234 0.108019 ACTTGTTCACCTTCCCGACC 59.892 55.000 0.00 0.00 0.00 4.79
265 267 9.950680 TTCTTGTACATGAATTCTTCAGAAAAC 57.049 29.630 17.62 0.00 43.98 2.43
267 269 7.722795 TGTACATGAATTCTTCAGAAAACGA 57.277 32.000 7.05 0.00 43.98 3.85
326 330 2.469826 TGCACGCAGGTAGATTAATCG 58.530 47.619 9.78 0.00 0.00 3.34
328 332 2.802057 GCACGCAGGTAGATTAATCGGT 60.802 50.000 9.78 0.00 0.00 4.69
329 333 3.454375 CACGCAGGTAGATTAATCGGTT 58.546 45.455 9.78 0.00 0.00 4.44
363 367 6.437755 TGCTAGTTAGTCCTCCTTACCAATA 58.562 40.000 0.00 0.00 0.00 1.90
375 379 3.952323 CCTTACCAATAGAGTCCTCGACA 59.048 47.826 0.00 0.00 34.60 4.35
388 392 3.067106 TCCTCGACAAAGAACTGAATGC 58.933 45.455 0.00 0.00 0.00 3.56
417 421 4.625324 GCCCACTTGATGTACATGTCCTTA 60.625 45.833 14.43 0.00 35.22 2.69
425 429 7.437713 TGATGTACATGTCCTTATTCTCCTT 57.562 36.000 14.43 0.00 0.00 3.36
474 486 2.019249 CCGACGATGTACCTCTTACCA 58.981 52.381 0.00 0.00 0.00 3.25
477 489 4.441079 CCGACGATGTACCTCTTACCAATT 60.441 45.833 0.00 0.00 0.00 2.32
480 492 4.468510 ACGATGTACCTCTTACCAATTGGA 59.531 41.667 31.22 11.78 38.94 3.53
504 516 2.112297 GGAACGAGCCCAACACCA 59.888 61.111 0.00 0.00 0.00 4.17
539 551 4.521062 GGACTCGGCAGCAGCGAT 62.521 66.667 0.00 0.00 43.41 4.58
546 558 1.142748 GGCAGCAGCGATGAGTAGT 59.857 57.895 4.02 0.00 43.41 2.73
548 560 1.482278 GCAGCAGCGATGAGTAGTAC 58.518 55.000 4.02 0.00 0.00 2.73
559 571 4.965158 CGATGAGTAGTACGAAGAAGAAGC 59.035 45.833 0.00 0.00 0.00 3.86
563 575 5.472478 TGAGTAGTACGAAGAAGAAGCTGAA 59.528 40.000 0.00 0.00 0.00 3.02
580 592 1.065926 TGAACAGCTGAGCCATCGATT 60.066 47.619 23.35 0.00 0.00 3.34
586 598 2.158856 AGCTGAGCCATCGATTGATCAA 60.159 45.455 16.92 11.26 30.49 2.57
589 601 4.261489 GCTGAGCCATCGATTGATCAAAAT 60.261 41.667 16.92 3.99 30.49 1.82
614 627 0.811281 GAACACTGGGTATGGCTTGC 59.189 55.000 0.00 0.00 0.00 4.01
660 676 2.447887 CGACGTGGATGTGCAGAGC 61.448 63.158 0.00 0.00 0.00 4.09
661 677 1.079543 GACGTGGATGTGCAGAGCT 60.080 57.895 0.00 0.00 0.00 4.09
663 679 1.079612 CGTGGATGTGCAGAGCTGA 60.080 57.895 0.00 0.00 0.00 4.26
697 714 1.691801 GGGGGAGGGAGTACGAAAGAT 60.692 57.143 0.00 0.00 0.00 2.40
704 721 3.639094 AGGGAGTACGAAAGATGAGGATG 59.361 47.826 0.00 0.00 0.00 3.51
705 722 3.385111 GGGAGTACGAAAGATGAGGATGT 59.615 47.826 0.00 0.00 0.00 3.06
706 723 4.363999 GGAGTACGAAAGATGAGGATGTG 58.636 47.826 0.00 0.00 0.00 3.21
707 724 3.786635 AGTACGAAAGATGAGGATGTGC 58.213 45.455 0.00 0.00 0.00 4.57
708 725 2.768253 ACGAAAGATGAGGATGTGCA 57.232 45.000 0.00 0.00 0.00 4.57
709 726 3.272574 ACGAAAGATGAGGATGTGCAT 57.727 42.857 0.00 0.00 0.00 3.96
710 727 2.941064 ACGAAAGATGAGGATGTGCATG 59.059 45.455 0.00 0.00 0.00 4.06
711 728 3.200483 CGAAAGATGAGGATGTGCATGA 58.800 45.455 0.00 0.00 0.00 3.07
712 729 3.813724 CGAAAGATGAGGATGTGCATGAT 59.186 43.478 0.00 0.00 0.00 2.45
713 730 4.319549 CGAAAGATGAGGATGTGCATGATG 60.320 45.833 0.00 0.00 0.00 3.07
714 731 3.141767 AGATGAGGATGTGCATGATGG 57.858 47.619 0.00 0.00 0.00 3.51
715 732 1.540267 GATGAGGATGTGCATGATGGC 59.460 52.381 0.00 0.00 0.00 4.40
721 738 1.099295 ATGTGCATGATGGCGTGAGG 61.099 55.000 0.00 0.00 36.28 3.86
725 742 1.227764 CATGATGGCGTGAGGGGAG 60.228 63.158 0.00 0.00 32.63 4.30
767 796 2.126031 GCGAGGGGACGTCAAGAC 60.126 66.667 18.91 4.08 44.35 3.01
778 807 1.341531 ACGTCAAGACCAAGTGGAGAG 59.658 52.381 3.83 0.00 38.94 3.20
802 831 2.487892 GCGGTGTAATTTGGCGGG 59.512 61.111 0.00 0.00 0.00 6.13
805 834 1.451067 CGGTGTAATTTGGCGGGTTA 58.549 50.000 0.00 0.00 0.00 2.85
819 848 1.728425 CGGGTTAGTTGCTTCGGTTAC 59.272 52.381 0.00 0.00 0.00 2.50
834 865 3.889520 GGTTACCGAGACTTGGAAGAT 57.110 47.619 16.24 0.00 0.00 2.40
837 868 5.727434 GGTTACCGAGACTTGGAAGATTTA 58.273 41.667 16.24 0.00 0.00 1.40
838 869 5.811100 GGTTACCGAGACTTGGAAGATTTAG 59.189 44.000 16.24 0.00 0.00 1.85
839 870 6.396450 GTTACCGAGACTTGGAAGATTTAGT 58.604 40.000 16.24 0.00 0.00 2.24
843 874 6.771267 ACCGAGACTTGGAAGATTTAGTTTTT 59.229 34.615 16.24 0.00 0.00 1.94
876 907 4.177026 CGAAGAATTGGTCTGTACTCCTG 58.823 47.826 0.00 0.00 36.40 3.86
877 908 4.322049 CGAAGAATTGGTCTGTACTCCTGT 60.322 45.833 0.00 0.00 36.40 4.00
880 911 5.580998 AGAATTGGTCTGTACTCCTGTAGA 58.419 41.667 0.00 0.00 34.29 2.59
882 913 6.322712 AGAATTGGTCTGTACTCCTGTAGATC 59.677 42.308 0.00 0.00 34.29 2.75
884 915 4.527944 TGGTCTGTACTCCTGTAGATCAG 58.472 47.826 0.00 0.00 43.27 2.90
922 954 3.547746 TGAACCGAAAGTTAACTTGCCT 58.452 40.909 21.22 6.18 39.40 4.75
962 997 3.726517 GCGAGCTTTGCTTCCGCA 61.727 61.111 16.76 0.00 46.25 5.69
1087 1122 2.753966 CCATGCCAGAAACGCGGAG 61.754 63.158 12.47 0.00 0.00 4.63
1821 1859 1.693083 GAACCTGTCGGCGTACATGC 61.693 60.000 6.85 0.00 0.00 4.06
1837 1875 3.173240 GCACGAGGAGAACGACGC 61.173 66.667 0.00 0.00 34.70 5.19
1888 1926 4.711178 CGTGTGGCGGATAGAGGAACTC 62.711 59.091 0.00 0.00 46.72 3.01
1936 1978 5.763876 ATTTAAGAAGCTGTACAGAGGGT 57.236 39.130 27.08 7.37 0.00 4.34
1942 1984 0.179134 GCTGTACAGAGGGTGTAGCG 60.179 60.000 27.08 0.00 42.56 4.26
1966 2008 2.732366 CGATTCATTCGGTCTCGTGAT 58.268 47.619 0.00 0.00 44.28 3.06
1979 2021 7.541162 TCGGTCTCGTGATAATTCTTTCTTAA 58.459 34.615 0.00 0.00 37.69 1.85
2019 2061 8.575589 TGACTTTAATTGACTTGTTACATGCAT 58.424 29.630 0.00 0.00 0.00 3.96
2020 2062 8.746922 ACTTTAATTGACTTGTTACATGCATG 57.253 30.769 25.09 25.09 0.00 4.06
2118 2160 2.159114 GGGGCAATGCAATACGAAACAT 60.159 45.455 7.79 0.00 0.00 2.71
2119 2161 3.115554 GGGCAATGCAATACGAAACATC 58.884 45.455 7.79 0.00 0.00 3.06
2174 2216 8.661257 CCATATTCGTACTGTGTTTGAATGTTA 58.339 33.333 0.00 0.00 32.07 2.41
2220 2262 5.852282 TTAATTTTCTAATCCTGGGCTGC 57.148 39.130 0.00 0.00 0.00 5.25
2224 2266 0.548031 TCTAATCCTGGGCTGCCTTG 59.452 55.000 19.68 11.25 0.00 3.61
2234 2276 1.538047 GGCTGCCTTGAAGATGACAA 58.462 50.000 12.43 0.00 0.00 3.18
2236 2278 2.494870 GGCTGCCTTGAAGATGACAAAT 59.505 45.455 12.43 0.00 0.00 2.32
2238 2280 3.730061 GCTGCCTTGAAGATGACAAATCG 60.730 47.826 0.00 0.00 0.00 3.34
2241 2283 2.684881 CCTTGAAGATGACAAATCGGGG 59.315 50.000 0.00 0.00 0.00 5.73
2289 2335 5.446143 TGTGAGTCTCTTTCTCTCTGTTC 57.554 43.478 0.65 0.00 33.59 3.18
2292 2338 5.708230 GTGAGTCTCTTTCTCTCTGTTCCTA 59.292 44.000 0.65 0.00 33.59 2.94
2318 2364 1.068748 GTGCAAGCAATCTGACACTGG 60.069 52.381 0.00 0.00 0.00 4.00
2339 2385 1.745653 GATTGCCCCTTTGTGCTACTC 59.254 52.381 0.00 0.00 0.00 2.59
2355 4783 3.615496 GCTACTCGCTCCGTTTCAAAATA 59.385 43.478 0.00 0.00 35.14 1.40
2356 4784 4.259850 GCTACTCGCTCCGTTTCAAAATAG 60.260 45.833 0.00 0.00 35.14 1.73
2358 4786 4.504858 ACTCGCTCCGTTTCAAAATAGAT 58.495 39.130 0.00 0.00 0.00 1.98
2359 4787 4.330074 ACTCGCTCCGTTTCAAAATAGATG 59.670 41.667 0.00 0.00 0.00 2.90
2360 4788 4.500127 TCGCTCCGTTTCAAAATAGATGA 58.500 39.130 0.00 0.00 0.00 2.92
2361 4789 4.328983 TCGCTCCGTTTCAAAATAGATGAC 59.671 41.667 0.00 0.00 0.00 3.06
2362 4790 4.330074 CGCTCCGTTTCAAAATAGATGACT 59.670 41.667 0.00 0.00 0.00 3.41
2363 4791 5.500931 CGCTCCGTTTCAAAATAGATGACTC 60.501 44.000 0.00 0.00 0.00 3.36
2364 4792 5.500931 GCTCCGTTTCAAAATAGATGACTCG 60.501 44.000 0.00 0.00 0.00 4.18
2365 4793 5.716094 TCCGTTTCAAAATAGATGACTCGA 58.284 37.500 0.00 0.00 0.00 4.04
2366 4794 5.575606 TCCGTTTCAAAATAGATGACTCGAC 59.424 40.000 0.00 0.00 0.00 4.20
2367 4795 5.577164 CCGTTTCAAAATAGATGACTCGACT 59.423 40.000 0.00 0.00 0.00 4.18
2368 4796 6.090898 CCGTTTCAAAATAGATGACTCGACTT 59.909 38.462 0.00 0.00 0.00 3.01
2371 4799 7.962964 TTCAAAATAGATGACTCGACTTTGT 57.037 32.000 0.00 0.00 0.00 2.83
2373 4801 8.462143 TCAAAATAGATGACTCGACTTTGTAC 57.538 34.615 0.00 0.00 0.00 2.90
2374 4802 8.304596 TCAAAATAGATGACTCGACTTTGTACT 58.695 33.333 0.00 0.00 0.00 2.73
2375 4803 9.569167 CAAAATAGATGACTCGACTTTGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
2388 5058 9.117183 TCGACTTTGTACTAAATATGCTCTCTA 57.883 33.333 0.00 0.00 0.00 2.43
2407 5077 9.393512 GCTCTCTATATATTGCCTGATGAATTT 57.606 33.333 0.00 0.00 0.00 1.82
2409 5079 9.676861 TCTCTATATATTGCCTGATGAATTTGG 57.323 33.333 0.00 0.00 0.00 3.28
2422 5092 8.316946 CCTGATGAATTTGGAGTAGCTATGATA 58.683 37.037 0.00 0.00 0.00 2.15
2473 5143 1.638529 TGTGCCGAATTGGGGAAAAT 58.361 45.000 8.73 0.00 38.63 1.82
2487 5157 5.072741 TGGGGAAAATCAAGAAGAAGACAG 58.927 41.667 0.00 0.00 0.00 3.51
2490 5160 4.460731 GGAAAATCAAGAAGAAGACAGGGG 59.539 45.833 0.00 0.00 0.00 4.79
2502 5172 1.002274 ACAGGGGTGAGAGCCTAGG 59.998 63.158 3.67 3.67 35.71 3.02
2513 5183 2.042230 GCCTAGGTCGGAAGGGGA 60.042 66.667 11.31 0.00 33.17 4.81
2536 5206 1.019805 GTTGGTAGCAGCCGGTTCTC 61.020 60.000 1.90 0.00 0.00 2.87
2584 5254 3.528370 CCCTTCGATCGGGAGCGT 61.528 66.667 16.41 0.00 44.90 5.07
2588 5258 0.661552 CTTCGATCGGGAGCGTCTTA 59.338 55.000 16.41 0.00 41.48 2.10
2602 5359 2.356695 GCGTCTTAGGTGTGTTTGGTTT 59.643 45.455 0.00 0.00 0.00 3.27
2631 5388 2.467566 ACCAGAATGTAACGGGTCAC 57.532 50.000 0.00 0.00 30.75 3.67
2655 5412 3.306780 CCCGTTACTGGGCCATATTCTAG 60.307 52.174 6.72 0.00 43.70 2.43
2666 5423 3.003378 GCCATATTCTAGCGTTTGGTTCC 59.997 47.826 0.00 0.00 0.00 3.62
2700 5465 2.730382 GTTCCCACCCACCGAATATTT 58.270 47.619 0.00 0.00 0.00 1.40
2716 5481 6.425114 CCGAATATTTCACTGAGATCCGAAAT 59.575 38.462 0.00 0.00 40.30 2.17
2721 5486 3.017442 TCACTGAGATCCGAAATCGAGT 58.983 45.455 4.04 0.00 43.02 4.18
2729 5494 2.168496 TCCGAAATCGAGTGGTCTCTT 58.832 47.619 4.04 0.00 43.02 2.85
2769 5534 1.202604 GGAAACGTCCCTCAACACTCA 60.203 52.381 0.00 0.00 38.08 3.41
2772 5537 1.633774 ACGTCCCTCAACACTCATCT 58.366 50.000 0.00 0.00 0.00 2.90
2782 5547 5.178096 TCAACACTCATCTCTCTCTCTCT 57.822 43.478 0.00 0.00 0.00 3.10
2784 5549 5.045651 TCAACACTCATCTCTCTCTCTCTCT 60.046 44.000 0.00 0.00 0.00 3.10
2785 5550 5.028549 ACACTCATCTCTCTCTCTCTCTC 57.971 47.826 0.00 0.00 0.00 3.20
2786 5551 4.718774 ACACTCATCTCTCTCTCTCTCTCT 59.281 45.833 0.00 0.00 0.00 3.10
2787 5552 5.163364 ACACTCATCTCTCTCTCTCTCTCTC 60.163 48.000 0.00 0.00 0.00 3.20
2788 5553 5.070180 CACTCATCTCTCTCTCTCTCTCTCT 59.930 48.000 0.00 0.00 0.00 3.10
2789 5554 5.304101 ACTCATCTCTCTCTCTCTCTCTCTC 59.696 48.000 0.00 0.00 0.00 3.20
2790 5555 5.462240 TCATCTCTCTCTCTCTCTCTCTCT 58.538 45.833 0.00 0.00 0.00 3.10
2792 5557 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
2802 5567 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2804 5569 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2806 5571 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2807 5572 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2808 5573 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2809 5574 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2810 5575 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2812 5577 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2816 5581 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2817 5582 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2820 5585 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2821 5586 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2822 5587 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2824 5589 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2825 5590 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2827 5592 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2829 5594 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2830 5595 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2831 5596 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2832 5597 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2878 7823 2.266055 GCTCCCTCCCACGACTTG 59.734 66.667 0.00 0.00 0.00 3.16
2906 7851 1.837499 CCGGTCCCACCCTAGATCC 60.837 68.421 0.00 0.00 33.75 3.36
2909 7854 1.760875 GTCCCACCCTAGATCCGCA 60.761 63.158 0.00 0.00 0.00 5.69
2915 7860 3.536917 CCTAGATCCGCACCGCCA 61.537 66.667 0.00 0.00 0.00 5.69
2918 7863 2.685387 CTAGATCCGCACCGCCAGAC 62.685 65.000 0.00 0.00 0.00 3.51
2927 7872 4.200283 CCGCCAGACGCTCCTCTC 62.200 72.222 0.00 0.00 41.76 3.20
2928 7873 4.200283 CGCCAGACGCTCCTCTCC 62.200 72.222 0.00 0.00 34.21 3.71
2929 7874 2.757917 GCCAGACGCTCCTCTCCT 60.758 66.667 0.00 0.00 0.00 3.69
2930 7875 2.355193 GCCAGACGCTCCTCTCCTT 61.355 63.158 0.00 0.00 0.00 3.36
2931 7876 1.515020 CCAGACGCTCCTCTCCTTG 59.485 63.158 0.00 0.00 0.00 3.61
2932 7877 0.967887 CCAGACGCTCCTCTCCTTGA 60.968 60.000 0.00 0.00 0.00 3.02
2933 7878 1.110442 CAGACGCTCCTCTCCTTGAT 58.890 55.000 0.00 0.00 0.00 2.57
2934 7879 1.480137 CAGACGCTCCTCTCCTTGATT 59.520 52.381 0.00 0.00 0.00 2.57
2935 7880 1.754226 AGACGCTCCTCTCCTTGATTC 59.246 52.381 0.00 0.00 0.00 2.52
2936 7881 0.457851 ACGCTCCTCTCCTTGATTCG 59.542 55.000 0.00 0.00 0.00 3.34
2937 7882 0.873743 CGCTCCTCTCCTTGATTCGC 60.874 60.000 0.00 0.00 0.00 4.70
2938 7883 0.873743 GCTCCTCTCCTTGATTCGCG 60.874 60.000 0.00 0.00 0.00 5.87
2939 7884 0.457851 CTCCTCTCCTTGATTCGCGT 59.542 55.000 5.77 0.00 0.00 6.01
2940 7885 0.456221 TCCTCTCCTTGATTCGCGTC 59.544 55.000 5.77 0.00 0.00 5.19
2941 7886 0.867753 CCTCTCCTTGATTCGCGTCG 60.868 60.000 5.77 0.00 0.00 5.12
2942 7887 0.179161 CTCTCCTTGATTCGCGTCGT 60.179 55.000 5.77 0.00 0.00 4.34
2943 7888 0.179171 TCTCCTTGATTCGCGTCGTC 60.179 55.000 5.77 3.50 0.00 4.20
2944 7889 1.464429 CTCCTTGATTCGCGTCGTCG 61.464 60.000 5.77 0.00 40.37 5.12
2945 7890 1.513373 CCTTGATTCGCGTCGTCGA 60.513 57.895 5.77 7.51 39.71 4.20
2960 7905 1.027792 GTCGAACGCTCCTCTCCTCT 61.028 60.000 0.00 0.00 0.00 3.69
2962 7907 0.179150 CGAACGCTCCTCTCCTCTTG 60.179 60.000 0.00 0.00 0.00 3.02
3020 7965 2.124983 ACAGGCGCCAGTATGCAG 60.125 61.111 31.54 9.74 31.97 4.41
3028 7973 1.886313 CCAGTATGCAGCGCTCAGG 60.886 63.158 7.13 0.00 31.97 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.649652 AAGCCCTCCTAGCCCTGCT 62.650 63.158 0.00 0.00 43.41 4.24
50 51 2.032681 GCTCAACGTCAAGGCCCT 59.967 61.111 0.00 0.00 0.00 5.19
51 52 1.675641 ATGCTCAACGTCAAGGCCC 60.676 57.895 0.00 0.00 0.00 5.80
232 234 5.573282 AGAATTCATGTACAAGAACGACTCG 59.427 40.000 15.23 0.00 0.00 4.18
287 289 7.114953 TGCGTGCATTTTGTTTTTATTAATCGA 59.885 29.630 0.00 0.00 0.00 3.59
340 344 5.873146 ATTGGTAAGGAGGACTAACTAGC 57.127 43.478 0.00 0.00 0.00 3.42
363 367 3.223435 TCAGTTCTTTGTCGAGGACTCT 58.777 45.455 0.00 0.00 33.08 3.24
375 379 2.165998 GCCTCCAGCATTCAGTTCTTT 58.834 47.619 0.00 0.00 42.97 2.52
388 392 0.911769 TACATCAAGTGGGCCTCCAG 59.088 55.000 4.53 0.00 45.05 3.86
450 454 1.226888 GAGGTACATCGTCGGTGGC 60.227 63.158 10.81 2.14 0.00 5.01
453 457 2.019984 GGTAAGAGGTACATCGTCGGT 58.980 52.381 0.00 0.00 36.24 4.69
474 486 2.329614 CGTTCCGCCGGTTCCAATT 61.330 57.895 1.63 0.00 0.00 2.32
477 489 4.367023 CTCGTTCCGCCGGTTCCA 62.367 66.667 1.63 0.00 0.00 3.53
536 548 4.965158 GCTTCTTCTTCGTACTACTCATCG 59.035 45.833 0.00 0.00 0.00 3.84
539 551 5.001874 TCAGCTTCTTCTTCGTACTACTCA 58.998 41.667 0.00 0.00 0.00 3.41
546 558 3.005897 AGCTGTTCAGCTTCTTCTTCGTA 59.994 43.478 19.80 0.00 43.52 3.43
548 560 2.157279 CAGCTGTTCAGCTTCTTCTTCG 59.843 50.000 22.40 7.23 43.52 3.79
559 571 0.108472 TCGATGGCTCAGCTGTTCAG 60.108 55.000 14.67 4.97 0.00 3.02
563 575 0.538584 TCAATCGATGGCTCAGCTGT 59.461 50.000 14.67 0.00 0.00 4.40
580 592 6.549364 ACCCAGTGTTCACTAAATTTTGATCA 59.451 34.615 6.63 3.55 0.00 2.92
586 598 5.185056 GCCATACCCAGTGTTCACTAAATTT 59.815 40.000 5.11 0.00 0.00 1.82
589 601 3.329520 AGCCATACCCAGTGTTCACTAAA 59.670 43.478 5.11 0.00 0.00 1.85
614 627 3.121944 GCAAACAGTGTAGTGATCAGTCG 59.878 47.826 6.25 0.00 0.00 4.18
660 676 2.224867 CCCCCTATAAACCATGGCTCAG 60.225 54.545 13.04 2.00 0.00 3.35
661 677 1.780309 CCCCCTATAAACCATGGCTCA 59.220 52.381 13.04 0.00 0.00 4.26
663 679 2.065799 CTCCCCCTATAAACCATGGCT 58.934 52.381 13.04 0.00 0.00 4.75
697 714 0.816421 CGCCATCATGCACATCCTCA 60.816 55.000 0.00 0.00 0.00 3.86
704 721 2.475466 CCCTCACGCCATCATGCAC 61.475 63.158 0.00 0.00 0.00 4.57
705 722 2.124612 CCCTCACGCCATCATGCA 60.125 61.111 0.00 0.00 0.00 3.96
706 723 2.903855 CCCCTCACGCCATCATGC 60.904 66.667 0.00 0.00 0.00 4.06
707 724 1.227764 CTCCCCTCACGCCATCATG 60.228 63.158 0.00 0.00 0.00 3.07
708 725 2.446848 CCTCCCCTCACGCCATCAT 61.447 63.158 0.00 0.00 0.00 2.45
709 726 3.083349 CCTCCCCTCACGCCATCA 61.083 66.667 0.00 0.00 0.00 3.07
710 727 2.764128 TCCTCCCCTCACGCCATC 60.764 66.667 0.00 0.00 0.00 3.51
711 728 2.765807 CTCCTCCCCTCACGCCAT 60.766 66.667 0.00 0.00 0.00 4.40
715 732 2.564553 CTTTCGCTCCTCCCCTCACG 62.565 65.000 0.00 0.00 0.00 4.35
721 738 1.541452 GCCTATTCTTTCGCTCCTCCC 60.541 57.143 0.00 0.00 0.00 4.30
725 742 1.139058 TCCTGCCTATTCTTTCGCTCC 59.861 52.381 0.00 0.00 0.00 4.70
755 772 0.602905 CCACTTGGTCTTGACGTCCC 60.603 60.000 14.12 7.39 0.00 4.46
763 792 1.205893 GATCGCTCTCCACTTGGTCTT 59.794 52.381 0.00 0.00 36.34 3.01
767 796 1.227089 CGGATCGCTCTCCACTTGG 60.227 63.158 2.77 0.00 34.78 3.61
791 820 2.797786 AGCAACTAACCCGCCAAATTA 58.202 42.857 0.00 0.00 0.00 1.40
793 822 1.544246 GAAGCAACTAACCCGCCAAAT 59.456 47.619 0.00 0.00 0.00 2.32
819 848 6.803154 AAAACTAAATCTTCCAAGTCTCGG 57.197 37.500 0.00 0.00 0.00 4.63
843 874 2.027192 CCAATTCTTCGTCTCCCCTCAA 60.027 50.000 0.00 0.00 0.00 3.02
844 875 1.555075 CCAATTCTTCGTCTCCCCTCA 59.445 52.381 0.00 0.00 0.00 3.86
845 876 1.555533 ACCAATTCTTCGTCTCCCCTC 59.444 52.381 0.00 0.00 0.00 4.30
846 877 1.555533 GACCAATTCTTCGTCTCCCCT 59.444 52.381 0.00 0.00 0.00 4.79
848 879 2.028020 ACAGACCAATTCTTCGTCTCCC 60.028 50.000 0.00 0.00 34.65 4.30
850 881 5.061920 AGTACAGACCAATTCTTCGTCTC 57.938 43.478 0.00 0.00 34.65 3.36
851 882 4.082136 GGAGTACAGACCAATTCTTCGTCT 60.082 45.833 0.00 0.00 37.34 4.18
852 883 4.082136 AGGAGTACAGACCAATTCTTCGTC 60.082 45.833 0.00 0.00 28.96 4.20
853 884 3.833070 AGGAGTACAGACCAATTCTTCGT 59.167 43.478 0.00 0.00 28.96 3.85
854 885 4.177026 CAGGAGTACAGACCAATTCTTCG 58.823 47.826 0.00 0.00 28.96 3.79
888 919 1.202879 TCGGTTCAATCTTGGGTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
922 954 0.546267 AGGAAAGAGGAGGCAGCTCA 60.546 55.000 0.00 0.00 0.00 4.26
962 997 1.746517 GCGATGAGGATTACGGGGT 59.253 57.895 0.00 0.00 0.00 4.95
1065 1100 3.056313 GCGTTTCTGGCATGGGAGC 62.056 63.158 0.00 0.00 0.00 4.70
1066 1101 2.753966 CGCGTTTCTGGCATGGGAG 61.754 63.158 0.00 0.00 0.00 4.30
1821 1859 2.870161 CGCGTCGTTCTCCTCGTG 60.870 66.667 0.00 0.00 0.00 4.35
1837 1875 2.815211 CGACCTGCATGTCCACCG 60.815 66.667 15.40 1.96 31.35 4.94
1999 2041 7.213216 ACACATGCATGTAACAAGTCAATTA 57.787 32.000 30.92 0.00 39.39 1.40
2002 2044 5.529060 TGTACACATGCATGTAACAAGTCAA 59.471 36.000 30.39 16.22 39.39 3.18
2054 2096 9.551734 TGTCATCATCGATAATTTCTTCAGAAT 57.448 29.630 0.00 0.00 33.54 2.40
2096 2138 1.203523 GTTTCGTATTGCATTGCCCCA 59.796 47.619 6.12 0.00 0.00 4.96
2143 2185 7.802738 TCAAACACAGTACGAATATGGAAAAG 58.197 34.615 0.00 0.00 0.00 2.27
2220 2262 2.684881 CCCCGATTTGTCATCTTCAAGG 59.315 50.000 0.00 0.00 0.00 3.61
2224 2266 2.985896 TCACCCCGATTTGTCATCTTC 58.014 47.619 0.00 0.00 0.00 2.87
2236 2278 1.065709 GCCTTAACTGAATCACCCCGA 60.066 52.381 0.00 0.00 0.00 5.14
2238 2280 2.290960 ACAGCCTTAACTGAATCACCCC 60.291 50.000 0.00 0.00 40.25 4.95
2241 2283 3.326747 ACGACAGCCTTAACTGAATCAC 58.673 45.455 0.00 0.00 40.25 3.06
2289 2335 2.744202 AGATTGCTTGCACGTCTTTAGG 59.256 45.455 0.00 0.00 0.00 2.69
2292 2338 2.031682 GTCAGATTGCTTGCACGTCTTT 60.032 45.455 6.88 0.00 0.00 2.52
2318 2364 0.817654 GTAGCACAAAGGGGCAATCC 59.182 55.000 0.00 0.00 0.00 3.01
2339 2385 4.330074 AGTCATCTATTTTGAAACGGAGCG 59.670 41.667 0.00 0.00 0.00 5.03
2355 4783 9.737427 CATATTTAGTACAAAGTCGAGTCATCT 57.263 33.333 0.00 0.00 0.00 2.90
2356 4784 8.480853 GCATATTTAGTACAAAGTCGAGTCATC 58.519 37.037 0.00 0.00 0.00 2.92
2358 4786 7.544622 AGCATATTTAGTACAAAGTCGAGTCA 58.455 34.615 0.00 0.00 0.00 3.41
2359 4787 7.916450 AGAGCATATTTAGTACAAAGTCGAGTC 59.084 37.037 0.00 0.00 0.00 3.36
2360 4788 7.773149 AGAGCATATTTAGTACAAAGTCGAGT 58.227 34.615 0.00 0.00 0.00 4.18
2361 4789 8.132362 AGAGAGCATATTTAGTACAAAGTCGAG 58.868 37.037 0.00 0.00 0.00 4.04
2362 4790 7.997482 AGAGAGCATATTTAGTACAAAGTCGA 58.003 34.615 0.00 0.00 0.00 4.20
2363 4791 9.900710 ATAGAGAGCATATTTAGTACAAAGTCG 57.099 33.333 0.00 0.00 0.00 4.18
2376 4804 9.999660 CATCAGGCAATATATAGAGAGCATATT 57.000 33.333 0.00 0.00 0.00 1.28
2380 4808 7.486407 TTCATCAGGCAATATATAGAGAGCA 57.514 36.000 0.00 0.00 0.00 4.26
2388 5058 9.458727 CTACTCCAAATTCATCAGGCAATATAT 57.541 33.333 0.00 0.00 0.00 0.86
2422 5092 6.295745 CCTGTGATCACTGAATATATCCAGCT 60.296 42.308 28.47 0.00 33.90 4.24
2431 5101 3.515104 TCTGTGCCTGTGATCACTGAATA 59.485 43.478 28.47 15.79 37.92 1.75
2473 5143 2.634940 CTCACCCCTGTCTTCTTCTTGA 59.365 50.000 0.00 0.00 0.00 3.02
2487 5157 2.128507 CGACCTAGGCTCTCACCCC 61.129 68.421 9.30 0.00 0.00 4.95
2490 5160 0.741915 CTTCCGACCTAGGCTCTCAC 59.258 60.000 9.30 0.00 0.00 3.51
2502 5172 1.244816 CCAACTTTTCCCCTTCCGAC 58.755 55.000 0.00 0.00 0.00 4.79
2513 5183 0.179001 ACCGGCTGCTACCAACTTTT 60.179 50.000 0.00 0.00 0.00 2.27
2584 5254 4.080243 TCCTGAAACCAAACACACCTAAGA 60.080 41.667 0.00 0.00 0.00 2.10
2588 5258 2.758423 GTTCCTGAAACCAAACACACCT 59.242 45.455 0.00 0.00 31.20 4.00
2602 5359 4.394729 GTTACATTCTGGTTGGTTCCTGA 58.605 43.478 0.00 0.00 34.48 3.86
2639 5396 1.424638 ACGCTAGAATATGGCCCAGT 58.575 50.000 0.00 0.00 29.98 4.00
2648 5405 3.255725 CGTGGAACCAAACGCTAGAATA 58.744 45.455 0.00 0.00 32.40 1.75
2655 5412 1.009335 GTTCCGTGGAACCAAACGC 60.009 57.895 18.96 0.00 46.21 4.84
2700 5465 3.017442 ACTCGATTTCGGATCTCAGTGA 58.983 45.455 0.00 0.00 40.29 3.41
2716 5481 4.560128 CTCAATTTGAAGAGACCACTCGA 58.440 43.478 0.01 0.00 46.64 4.04
2721 5486 2.038426 TCCGCTCAATTTGAAGAGACCA 59.962 45.455 0.01 0.00 33.74 4.02
2747 5512 1.595929 TGTTGAGGGACGTTTCCGC 60.596 57.895 0.00 0.00 43.94 5.54
2753 5518 1.546476 GAGATGAGTGTTGAGGGACGT 59.454 52.381 0.00 0.00 0.00 4.34
2763 5528 4.718774 AGAGAGAGAGAGAGAGATGAGTGT 59.281 45.833 0.00 0.00 0.00 3.55
2769 5534 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
2772 5537 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2782 5547 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2784 5549 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2785 5550 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2786 5551 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2787 5552 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2788 5553 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2789 5554 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2790 5555 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2792 5557 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2802 5567 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2804 5569 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2806 5571 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2807 5572 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2808 5573 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2809 5574 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2810 5575 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2812 5577 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2816 5581 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2817 5582 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2820 5585 3.885901 CGAGAGAGAGAGAGAGAGAGAGA 59.114 52.174 0.00 0.00 0.00 3.10
2821 5586 3.551863 GCGAGAGAGAGAGAGAGAGAGAG 60.552 56.522 0.00 0.00 0.00 3.20
2822 5587 2.362397 GCGAGAGAGAGAGAGAGAGAGA 59.638 54.545 0.00 0.00 0.00 3.10
2824 5589 2.107366 TGCGAGAGAGAGAGAGAGAGA 58.893 52.381 0.00 0.00 0.00 3.10
2825 5590 2.205074 GTGCGAGAGAGAGAGAGAGAG 58.795 57.143 0.00 0.00 0.00 3.20
2827 5592 2.022764 TGTGCGAGAGAGAGAGAGAG 57.977 55.000 0.00 0.00 0.00 3.20
2829 5594 1.401552 CCTTGTGCGAGAGAGAGAGAG 59.598 57.143 0.00 0.00 0.00 3.20
2830 5595 1.458398 CCTTGTGCGAGAGAGAGAGA 58.542 55.000 0.00 0.00 0.00 3.10
2831 5596 0.179140 GCCTTGTGCGAGAGAGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
2832 5597 1.599606 GGCCTTGTGCGAGAGAGAGA 61.600 60.000 0.00 0.00 42.61 3.10
2895 7840 2.417516 CGGTGCGGATCTAGGGTG 59.582 66.667 0.00 0.00 0.00 4.61
2896 7841 3.537874 GCGGTGCGGATCTAGGGT 61.538 66.667 0.00 0.00 0.00 4.34
2899 7844 2.028190 CTGGCGGTGCGGATCTAG 59.972 66.667 0.00 0.00 0.00 2.43
2915 7860 1.754226 GAATCAAGGAGAGGAGCGTCT 59.246 52.381 0.00 0.00 0.00 4.18
2918 7863 0.873743 GCGAATCAAGGAGAGGAGCG 60.874 60.000 0.00 0.00 0.00 5.03
2927 7872 1.068832 TTCGACGACGCGAATCAAGG 61.069 55.000 15.93 0.00 44.43 3.61
2928 7873 2.345900 TTCGACGACGCGAATCAAG 58.654 52.632 15.93 0.00 44.43 3.02
2929 7874 4.537288 TTCGACGACGCGAATCAA 57.463 50.000 15.93 1.92 44.43 2.57
2937 7882 2.573689 GAGGAGCGTTCGACGACG 60.574 66.667 5.29 5.29 46.05 5.12
2938 7883 1.226073 GAGAGGAGCGTTCGACGAC 60.226 63.158 10.82 0.00 46.05 4.34
2939 7884 2.396955 GGAGAGGAGCGTTCGACGA 61.397 63.158 10.82 0.00 46.05 4.20
2940 7885 2.100603 GGAGAGGAGCGTTCGACG 59.899 66.667 0.00 3.50 45.88 5.12
2941 7886 1.027792 AGAGGAGAGGAGCGTTCGAC 61.028 60.000 0.00 0.00 0.00 4.20
2942 7887 0.322636 AAGAGGAGAGGAGCGTTCGA 60.323 55.000 0.00 0.00 0.00 3.71
2943 7888 0.179150 CAAGAGGAGAGGAGCGTTCG 60.179 60.000 0.00 0.00 0.00 3.95
2944 7889 1.178276 TCAAGAGGAGAGGAGCGTTC 58.822 55.000 0.00 0.00 0.00 3.95
2945 7890 1.633774 TTCAAGAGGAGAGGAGCGTT 58.366 50.000 0.00 0.00 0.00 4.84
2946 7891 1.754226 GATTCAAGAGGAGAGGAGCGT 59.246 52.381 0.00 0.00 0.00 5.07
2949 7894 1.068434 GCCGATTCAAGAGGAGAGGAG 59.932 57.143 0.00 0.00 0.00 3.69
2952 7897 1.202510 CCAGCCGATTCAAGAGGAGAG 60.203 57.143 0.00 0.00 0.00 3.20
3001 7946 3.264897 GCATACTGGCGCCTGTCG 61.265 66.667 37.98 29.78 42.12 4.35
3002 7947 2.125147 TGCATACTGGCGCCTGTC 60.125 61.111 37.98 25.38 36.28 3.51
3003 7948 2.124983 CTGCATACTGGCGCCTGT 60.125 61.111 36.40 36.40 36.28 4.00
3020 7965 1.298859 ATGAAACGGAACCTGAGCGC 61.299 55.000 0.00 0.00 0.00 5.92
3023 7968 2.484264 GTGGAATGAAACGGAACCTGAG 59.516 50.000 0.00 0.00 0.00 3.35
3028 7973 2.500229 TGGAGTGGAATGAAACGGAAC 58.500 47.619 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.