AutoCloner

Multiple sequence alignment - TraesCS7D01G366900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7D01G366900	chr7D	100.000	2831	0	0	1	2831	474491489	474488659	0.000000e+00	5228.0
1	TraesCS7D01G366900	chr7D	94.153	1163	59	8	602	1757	505347854	505349014	0.000000e+00	1762.0
2	TraesCS7D01G366900	chr7D	97.671	601	12	2	4	603	474498245	474497646	0.000000e+00	1031.0
3	TraesCS7D01G366900	chr7D	95.522	603	23	4	1	602	311689436	311690035	0.000000e+00	961.0
4	TraesCS7D01G366900	chr1D	96.878	1153	33	3	602	1752	369901102	369902253	0.000000e+00	1927.0
5	TraesCS7D01G366900	chr1D	95.987	598	22	2	4	601	295712916	295712321	0.000000e+00	970.0
6	TraesCS7D01G366900	chr7A	96.612	1151	37	2	602	1750	638575981	638574831	0.000000e+00	1908.0
7	TraesCS7D01G366900	chr7A	95.061	1154	54	3	602	1752	167799488	167798335	0.000000e+00	1812.0
8	TraesCS7D01G366900	chr7A	90.920	804	46	17	2047	2831	521463729	521464524	0.000000e+00	1055.0
9	TraesCS7D01G366900	chr7A	80.672	119	11	4	1933	2043	521463561	521463675	6.500000e-12	82.4
10	TraesCS7D01G366900	chr6D	95.675	1156	45	5	602	1752	446604085	446602930	0.000000e+00	1853.0
11	TraesCS7D01G366900	chr4D	94.468	1157	58	6	602	1752	39369223	39368067	0.000000e+00	1777.0
12	TraesCS7D01G366900	chr4D	95.695	604	21	5	4	606	328899482	328898883	0.000000e+00	966.0
13	TraesCS7D01G366900	chr4D	95.667	600	24	2	4	602	484694114	484693516	0.000000e+00	963.0
14	TraesCS7D01G366900	chr2D	93.523	1158	68	7	602	1752	646799552	646798395	0.000000e+00	1716.0
15	TraesCS7D01G366900	chr2D	93.523	1158	68	6	602	1752	646883328	646882171	0.000000e+00	1716.0
16	TraesCS7D01G366900	chr2D	93.264	1158	71	7	602	1752	646928470	646927313	0.000000e+00	1700.0
17	TraesCS7D01G366900	chr7B	92.434	793	27	12	2059	2831	498627499	498626720	0.000000e+00	1101.0
18	TraesCS7D01G366900	chr7B	87.109	256	19	4	1762	2008	498628194	498627944	7.720000e-71	278.0
19	TraesCS7D01G366900	chr3D	95.681	602	22	4	4	603	354024238	354023639	0.000000e+00	965.0
20	TraesCS7D01G366900	chr3D	95.364	604	25	3	1	603	296687164	296687765	0.000000e+00	957.0
21	TraesCS7D01G366900	chr5D	95.246	610	25	4	4	611	461807810	461807203	0.000000e+00	963.0
22	TraesCS7D01G366900	chr5D	95.515	602	23	4	4	603	3957991	3957392	0.000000e+00	959.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7D01G366900	chr7D	474488659	474491489	2830	True	5228.0	5228	100.0000	1	2831	1	chr7D.!!$R1	2830
1	TraesCS7D01G366900	chr7D	505347854	505349014	1160	False	1762.0	1762	94.1530	602	1757	1	chr7D.!!$F2	1155
2	TraesCS7D01G366900	chr7D	474497646	474498245	599	True	1031.0	1031	97.6710	4	603	1	chr7D.!!$R2	599
3	TraesCS7D01G366900	chr7D	311689436	311690035	599	False	961.0	961	95.5220	1	602	1	chr7D.!!$F1	601
4	TraesCS7D01G366900	chr1D	369901102	369902253	1151	False	1927.0	1927	96.8780	602	1752	1	chr1D.!!$F1	1150
5	TraesCS7D01G366900	chr1D	295712321	295712916	595	True	970.0	970	95.9870	4	601	1	chr1D.!!$R1	597
6	TraesCS7D01G366900	chr7A	638574831	638575981	1150	True	1908.0	1908	96.6120	602	1750	1	chr7A.!!$R2	1148
7	TraesCS7D01G366900	chr7A	167798335	167799488	1153	True	1812.0	1812	95.0610	602	1752	1	chr7A.!!$R1	1150
8	TraesCS7D01G366900	chr7A	521463561	521464524	963	False	568.7	1055	85.7960	1933	2831	2	chr7A.!!$F1	898
9	TraesCS7D01G366900	chr6D	446602930	446604085	1155	True	1853.0	1853	95.6750	602	1752	1	chr6D.!!$R1	1150
10	TraesCS7D01G366900	chr4D	39368067	39369223	1156	True	1777.0	1777	94.4680	602	1752	1	chr4D.!!$R1	1150
11	TraesCS7D01G366900	chr4D	328898883	328899482	599	True	966.0	966	95.6950	4	606	1	chr4D.!!$R2	602
12	TraesCS7D01G366900	chr4D	484693516	484694114	598	True	963.0	963	95.6670	4	602	1	chr4D.!!$R3	598
13	TraesCS7D01G366900	chr2D	646798395	646799552	1157	True	1716.0	1716	93.5230	602	1752	1	chr2D.!!$R1	1150
14	TraesCS7D01G366900	chr2D	646882171	646883328	1157	True	1716.0	1716	93.5230	602	1752	1	chr2D.!!$R2	1150
15	TraesCS7D01G366900	chr2D	646927313	646928470	1157	True	1700.0	1700	93.2640	602	1752	1	chr2D.!!$R3	1150
16	TraesCS7D01G366900	chr7B	498626720	498628194	1474	True	689.5	1101	89.7715	1762	2831	2	chr7B.!!$R1	1069
17	TraesCS7D01G366900	chr3D	354023639	354024238	599	True	965.0	965	95.6810	4	603	1	chr3D.!!$R1	599
18	TraesCS7D01G366900	chr3D	296687164	296687765	601	False	957.0	957	95.3640	1	603	1	chr3D.!!$F1	602
19	TraesCS7D01G366900	chr5D	461807203	461807810	607	True	963.0	963	95.2460	4	611	1	chr5D.!!$R2	607
20	TraesCS7D01G366900	chr5D	3957392	3957991	599	True	959.0	959	95.5150	4	603	1	chr5D.!!$R1	599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
573	579	0.31716	TCCTGTGTGTGCGTAGGAAG	59.683	55.0	0.0	0.0	36.44	3.46	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1857	1870	0.318784	GGTTCCGGAGAATCGATCGG	60.319	60.0	16.41	15.17	43.42	4.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
155	157	2.444895	CTCTAGGGCCGGCCTCTT	60.445	66.667	42.70	29.62	36.10	2.85
244	248	4.643387	GTGTGCGGTGCCCCTCTT	62.643	66.667	0.00	0.00	0.00	2.85
326	331	0.461548	ATCATCATCGTCACCACGCT	59.538	50.000	0.00	0.00	46.28	5.07
391	396	2.024871	GAGGGACGTCATCGAGCG	59.975	66.667	18.91	5.48	40.62	5.03
495	500	1.289109	TGTGCTAACGCTTCCGCTTC	61.289	55.000	0.00	0.00	38.22	3.86
573	579	0.317160	TCCTGTGTGTGCGTAGGAAG	59.683	55.000	0.00	0.00	36.44	3.46
724	730	1.476488	GAGGAGGAGAAGAGTGACAGC	59.524	57.143	0.00	0.00	0.00	4.40
811	820	2.350738	TGTGCAGATCGAGGACACA	58.649	52.632	10.55	8.68	38.83	3.72
944	953	2.765807	ACGAGGGCATGGAGGAGG	60.766	66.667	0.00	0.00	0.00	4.30
970	980	1.890041	AACAAGCGCCGCAACTACA	60.890	52.632	13.36	0.00	0.00	2.74
1567	1579	2.672098	ACAACCAAACACCATGCCTTA	58.328	42.857	0.00	0.00	0.00	2.69
1700	1713	2.101783	CATTTGCATAGCCAGGTTGGA	58.898	47.619	0.00	0.00	40.96	3.53
1703	1716	0.918258	TGCATAGCCAGGTTGGATGA	59.082	50.000	0.00	0.00	40.96	2.92
1750	1763	2.658268	GCACGGCAACCAAACAGC	60.658	61.111	0.00	0.00	0.00	4.40
1752	1765	2.123897	ACGGCAACCAAACAGCCT	60.124	55.556	0.00	0.00	46.14	4.58
1757	1770	1.616994	GGCAACCAAACAGCCTCCTAT	60.617	52.381	0.00	0.00	44.92	2.57
1758	1771	1.745653	GCAACCAAACAGCCTCCTATC	59.254	52.381	0.00	0.00	0.00	2.08
1759	1772	2.369394	CAACCAAACAGCCTCCTATCC	58.631	52.381	0.00	0.00	0.00	2.59
1760	1773	0.919710	ACCAAACAGCCTCCTATCCC	59.080	55.000	0.00	0.00	0.00	3.85
1773	1786	4.325422	CCTCCTATCCCCTATCGATCTCAA	60.325	50.000	0.00	0.00	0.00	3.02
1780	1793	3.055530	CCCCTATCGATCTCAATGGAAGG	60.056	52.174	0.00	0.00	0.00	3.46
1794	1807	3.678056	TGGAAGGTAAGCAGTGTACTG	57.322	47.619	7.64	7.64	46.40	2.74
1799	1812	4.785511	AGGTAAGCAGTGTACTGTACTG	57.214	45.455	17.98	12.09	46.37	2.74
1804	1817	1.616865	GCAGTGTACTGTACTGGTCCA	59.383	52.381	17.98	0.00	44.36	4.02
1805	1818	2.036733	GCAGTGTACTGTACTGGTCCAA	59.963	50.000	17.98	0.00	44.36	3.53
1808	1821	4.510340	CAGTGTACTGTACTGGTCCAAAAC	59.490	45.833	17.98	5.54	41.36	2.43
1814	1827	4.578928	ACTGTACTGGTCCAAAACACAATC	59.421	41.667	4.66	0.00	0.00	2.67
1817	1830	4.654091	ACTGGTCCAAAACACAATCAAG	57.346	40.909	0.00	0.00	0.00	3.02
1857	1870	0.036388	TCCTCCGATGTTTGACAGGC	60.036	55.000	0.00	0.00	0.00	4.85
1871	1884	1.372251	CAGGCCGATCGATTCTCCG	60.372	63.158	18.66	0.00	0.00	4.63
1883	1896	1.865340	GATTCTCCGGAACCAATACGC	59.135	52.381	5.23	0.00	33.96	4.42
1890	1903	0.942252	GGAACCAATACGCGAATCCC	59.058	55.000	15.93	0.00	0.00	3.85
1895	1908	0.937304	CAATACGCGAATCCCCTGTG	59.063	55.000	15.93	0.00	0.00	3.66
1901	1914	1.304052	CGAATCCCCTGTGGCCAAA	60.304	57.895	7.24	0.00	0.00	3.28
1912	1925	1.202758	TGTGGCCAAAGACAAGACGAT	60.203	47.619	7.24	0.00	0.00	3.73
1913	1926	1.464997	GTGGCCAAAGACAAGACGATC	59.535	52.381	7.24	0.00	0.00	3.69
1914	1927	0.721718	GGCCAAAGACAAGACGATCG	59.278	55.000	14.88	14.88	0.00	3.69
1915	1928	1.671850	GGCCAAAGACAAGACGATCGA	60.672	52.381	24.34	0.00	0.00	3.59
1916	1929	1.656095	GCCAAAGACAAGACGATCGAG	59.344	52.381	24.34	10.81	0.00	4.04
1996	2018	2.594958	CCGACGTGTACGACAACAAAAC	60.595	50.000	11.79	0.00	43.02	2.43
2000	2022	2.349275	CGTGTACGACAACAAAACCAGT	59.651	45.455	0.00	0.00	43.02	4.00
2005	2027	2.352342	ACGACAACAAAACCAGTTACGG	59.648	45.455	0.00	0.00	34.63	4.02
2008	2030	3.613030	ACAACAAAACCAGTTACGGACT	58.387	40.909	0.75	0.00	39.89	3.85
2035	2063	1.471684	CTGAGAGCCATCCTTGTTTGC	59.528	52.381	0.00	0.00	0.00	3.68
2043	2071	3.066621	GCCATCCTTGTTTGCATTCGATA	59.933	43.478	0.00	0.00	0.00	2.92
2044	2072	4.261741	GCCATCCTTGTTTGCATTCGATAT	60.262	41.667	0.00	0.00	0.00	1.63
2057	2135	8.574196	TTGCATTCGATATACATATACATCGG	57.426	34.615	0.00	0.00	33.02	4.18
2061	2139	9.399403	CATTCGATATACATATACATCGGAAGG	57.601	37.037	0.00	0.00	33.02	3.46
2084	2501	5.811100	GGTGTGAATCTTGTTACCTACTAGC	59.189	44.000	0.00	0.00	30.81	3.42
2174	2604	8.035984	ACAGCTCCAAGAAACTTATTAGAGTAC	58.964	37.037	0.00	0.00	0.00	2.73
2176	2606	8.254508	AGCTCCAAGAAACTTATTAGAGTACTG	58.745	37.037	0.00	0.00	0.00	2.74
2177	2607	8.035984	GCTCCAAGAAACTTATTAGAGTACTGT	58.964	37.037	0.00	0.00	0.00	3.55
2239	2671	9.045223	TCTATGCACAAGATCACAAACATATAC	57.955	33.333	0.00	0.00	0.00	1.47
2258	2696	0.732880	CGTACTGGAGCAGGTTCACG	60.733	60.000	0.00	0.00	35.51	4.35
2278	2716	2.716398	GCTTCACACTTGGAACGAAAC	58.284	47.619	0.00	0.00	0.00	2.78
2289	2730	1.335780	GGAACGAAACACATGCATGCA	60.336	47.619	26.53	25.04	0.00	3.96
2308	2749	3.835978	TGCAGGAAGTAGCTAACACCTAA	59.164	43.478	11.72	3.87	36.05	2.69
2309	2750	4.469945	TGCAGGAAGTAGCTAACACCTAAT	59.530	41.667	11.72	0.00	36.05	1.73
2310	2751	5.659525	TGCAGGAAGTAGCTAACACCTAATA	59.340	40.000	11.72	2.37	36.05	0.98
2311	2752	5.984323	GCAGGAAGTAGCTAACACCTAATAC	59.016	44.000	11.72	0.00	36.05	1.89
2312	2753	6.183360	GCAGGAAGTAGCTAACACCTAATACT	60.183	42.308	11.72	0.00	36.05	2.12
2313	2754	7.633116	GCAGGAAGTAGCTAACACCTAATACTT	60.633	40.741	11.72	2.89	36.05	2.24
2314	2755	8.910944	CAGGAAGTAGCTAACACCTAATACTTA	58.089	37.037	11.72	0.00	36.05	2.24
2328	2773	7.117812	CACCTAATACTTATATGGACGCTTTGG	59.882	40.741	0.00	0.00	0.00	3.28
2330	2775	7.660208	CCTAATACTTATATGGACGCTTTGGTT	59.340	37.037	0.00	0.00	0.00	3.67
2339	2784	1.082366	CGCTTTGGTTGGCACGTAC	60.082	57.895	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	0.541764	TGCACCCCTTGTCCAATTCC	60.542	55.000	0.00	0.00	0.00	3.01
155	157	4.813479	GCCCCGTATATAAAGGAGAGAGGA	60.813	50.000	7.00	0.00	0.00	3.71
160	162	3.170717	CCTGCCCCGTATATAAAGGAGA	58.829	50.000	7.00	0.00	0.00	3.71
244	248	2.454336	ATCGAGGTGGACTATGGTGA	57.546	50.000	0.00	0.00	0.00	4.02
326	331	0.969149	AGAGTTCCATCAGCACGACA	59.031	50.000	0.00	0.00	0.00	4.35
391	396	1.557443	CCGAGTTCAGCACACGTTCC	61.557	60.000	0.00	0.00	37.75	3.62
495	500	1.450312	ACGTACCCTCGTAGACCGG	60.450	63.158	0.00	0.00	42.35	5.28
617	623	1.002857	CAACCTTCCTCCTCCCCATT	58.997	55.000	0.00	0.00	0.00	3.16
724	730	3.190535	AGCTTGTAGTTAAAACGGCATGG	59.809	43.478	0.00	0.00	0.00	3.66
841	850	1.431195	TTGGGTGAAGGGGCTGCTTA	61.431	55.000	0.00	0.00	0.00	3.09
970	980	0.339859	TCCTCCTGATGGTAGTGGCT	59.660	55.000	0.00	0.00	34.23	4.75
1054	1065	2.038387	ACGAAGTGCTTGGTGAAGTT	57.962	45.000	0.00	0.00	42.51	2.66
1567	1579	3.149196	CTGCATGTTAGTCCACAAACCT	58.851	45.455	0.00	0.00	0.00	3.50
1700	1713	3.065786	CCGCATTGCATACACTTCTTCAT	59.934	43.478	9.69	0.00	0.00	2.57
1703	1716	1.745087	CCCGCATTGCATACACTTCTT	59.255	47.619	9.69	0.00	0.00	2.52
1750	1763	3.203263	TGAGATCGATAGGGGATAGGAGG	59.797	52.174	0.00	0.00	0.00	4.30
1752	1765	4.948062	TTGAGATCGATAGGGGATAGGA	57.052	45.455	0.00	0.00	0.00	2.94
1757	1770	3.542969	TCCATTGAGATCGATAGGGGA	57.457	47.619	0.00	0.00	0.00	4.81
1758	1771	3.055530	CCTTCCATTGAGATCGATAGGGG	60.056	52.174	0.00	0.00	0.00	4.79
1759	1772	3.580458	ACCTTCCATTGAGATCGATAGGG	59.420	47.826	0.00	0.00	0.00	3.53
1760	1773	4.881019	ACCTTCCATTGAGATCGATAGG	57.119	45.455	0.00	0.13	0.00	2.57
1773	1786	4.207891	CAGTACACTGCTTACCTTCCAT	57.792	45.455	0.00	0.00	37.15	3.41
1794	1807	5.067283	ACTTGATTGTGTTTTGGACCAGTAC	59.933	40.000	0.00	0.00	0.00	2.73
1799	1812	4.338118	TCTCACTTGATTGTGTTTTGGACC	59.662	41.667	0.00	0.00	38.90	4.46
1814	1827	9.806203	GGATATCTGATATCTCAATCTCACTTG	57.194	37.037	27.79	0.00	41.08	3.16
1817	1830	8.632679	GGAGGATATCTGATATCTCAATCTCAC	58.367	40.741	27.79	17.58	41.08	3.51
1857	1870	0.318784	GGTTCCGGAGAATCGATCGG	60.319	60.000	16.41	15.17	43.42	4.18
1871	1884	0.942252	GGGATTCGCGTATTGGTTCC	59.058	55.000	5.77	0.00	0.00	3.62
1883	1896	1.304052	TTTGGCCACAGGGGATTCG	60.304	57.895	3.88	0.00	40.01	3.34
1890	1903	0.954452	GTCTTGTCTTTGGCCACAGG	59.046	55.000	18.76	7.91	0.00	4.00
1895	1908	0.721718	CGATCGTCTTGTCTTTGGCC	59.278	55.000	7.03	0.00	0.00	5.36
1901	1914	1.542030	AGTTGCTCGATCGTCTTGTCT	59.458	47.619	15.94	5.46	0.00	3.41
1912	1925	3.748048	CCAGAATTTCTTCAGTTGCTCGA	59.252	43.478	0.00	0.00	33.56	4.04
1913	1926	3.748048	TCCAGAATTTCTTCAGTTGCTCG	59.252	43.478	0.00	0.00	33.56	5.03
1914	1927	5.695851	TTCCAGAATTTCTTCAGTTGCTC	57.304	39.130	0.00	0.00	33.56	4.26
1915	1928	5.595952	ACTTTCCAGAATTTCTTCAGTTGCT	59.404	36.000	0.00	0.00	33.56	3.91
1916	1929	5.836347	ACTTTCCAGAATTTCTTCAGTTGC	58.164	37.500	0.00	0.00	33.56	4.17
2000	2022	3.119459	GCTCTCAGTGATTCAGTCCGTAA	60.119	47.826	0.00	0.00	0.00	3.18
2005	2027	3.456280	GATGGCTCTCAGTGATTCAGTC	58.544	50.000	0.00	0.00	0.00	3.51
2008	2030	2.475155	AGGATGGCTCTCAGTGATTCA	58.525	47.619	0.00	0.00	0.00	2.57
2009	2031	3.204526	CAAGGATGGCTCTCAGTGATTC	58.795	50.000	0.00	0.00	0.00	2.52
2010	2032	2.575279	ACAAGGATGGCTCTCAGTGATT	59.425	45.455	0.00	0.00	0.00	2.57
2011	2033	2.194859	ACAAGGATGGCTCTCAGTGAT	58.805	47.619	0.00	0.00	0.00	3.06
2013	2035	2.486472	AACAAGGATGGCTCTCAGTG	57.514	50.000	0.00	0.00	0.00	3.66
2043	2071	6.911250	TCACACCTTCCGATGTATATGTAT	57.089	37.500	0.00	0.00	0.00	2.29
2044	2072	6.718522	TTCACACCTTCCGATGTATATGTA	57.281	37.500	0.00	0.00	0.00	2.29
2055	2133	3.435671	GGTAACAAGATTCACACCTTCCG	59.564	47.826	0.00	0.00	0.00	4.30
2057	2135	6.465084	AGTAGGTAACAAGATTCACACCTTC	58.535	40.000	0.00	0.00	37.55	3.46
2061	2139	6.395629	TGCTAGTAGGTAACAAGATTCACAC	58.604	40.000	0.00	0.00	41.41	3.82
2127	2553	8.416329	AGCTGTGAGATTTTTCTGTGTTTAATT	58.584	29.630	0.00	0.00	0.00	1.40
2137	2563	4.978099	TCTTGGAGCTGTGAGATTTTTCT	58.022	39.130	0.00	0.00	0.00	2.52
2197	2627	6.319405	TGTGCATAGATCAAGCATGTTTGTAT	59.681	34.615	20.01	12.83	40.78	2.29
2239	2671	0.732880	CGTGAACCTGCTCCAGTACG	60.733	60.000	0.00	0.00	0.00	3.67
2258	2696	2.096819	TGTTTCGTTCCAAGTGTGAAGC	59.903	45.455	0.00	0.00	0.00	3.86
2278	2716	1.065102	GCTACTTCCTGCATGCATGTG	59.935	52.381	26.79	19.02	0.00	3.21
2289	2730	7.974730	AAGTATTAGGTGTTAGCTACTTCCT	57.025	36.000	12.44	12.44	36.39	3.36
2308	2749	5.763204	CCAACCAAAGCGTCCATATAAGTAT	59.237	40.000	0.00	0.00	0.00	2.12
2309	2750	5.120399	CCAACCAAAGCGTCCATATAAGTA	58.880	41.667	0.00	0.00	0.00	2.24
2310	2751	3.945285	CCAACCAAAGCGTCCATATAAGT	59.055	43.478	0.00	0.00	0.00	2.24
2311	2752	3.243068	GCCAACCAAAGCGTCCATATAAG	60.243	47.826	0.00	0.00	0.00	1.73
2312	2753	2.685897	GCCAACCAAAGCGTCCATATAA	59.314	45.455	0.00	0.00	0.00	0.98
2313	2754	2.294074	GCCAACCAAAGCGTCCATATA	58.706	47.619	0.00	0.00	0.00	0.86
2314	2755	1.102978	GCCAACCAAAGCGTCCATAT	58.897	50.000	0.00	0.00	0.00	1.78
2328	2773	1.286354	TTAGCTGCGTACGTGCCAAC	61.286	55.000	24.05	8.68	0.00	3.77
2330	2775	1.445410	CTTAGCTGCGTACGTGCCA	60.445	57.895	24.05	13.47	0.00	4.92
2781	3231	2.445845	TCCTACCCGCCCATCCAG	60.446	66.667	0.00	0.00	0.00	3.86

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.