Multiple sequence alignment - TraesCS7D01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7D01G366800 chr7D 100.000 3050 0 0 1 3050 474487255 474490304 0.000000e+00 5633.0
1 TraesCS7D01G366800 chr7D 98.239 568 9 1 2484 3050 621164031 621163464 0.000000e+00 992.0
2 TraesCS7D01G366800 chr7B 93.279 2217 87 23 1 2177 498625305 498627499 0.000000e+00 3212.0
3 TraesCS7D01G366800 chr7B 96.837 569 16 2 2484 3050 457416009 457415441 0.000000e+00 950.0
4 TraesCS7D01G366800 chr7B 96.479 568 19 1 2484 3050 494219830 494220397 0.000000e+00 937.0
5 TraesCS7D01G366800 chr7B 87.109 256 19 4 2228 2474 498627944 498628194 8.330000e-71 278.0
6 TraesCS7D01G366800 chr7A 90.934 1478 87 31 734 2189 521465181 521463729 0.000000e+00 1943.0
7 TraesCS7D01G366800 chr7A 96.643 566 18 1 2486 3050 638574831 638575396 0.000000e+00 939.0
8 TraesCS7D01G366800 chr7A 85.440 728 77 17 22 733 521466669 521465955 0.000000e+00 730.0
9 TraesCS7D01G366800 chr7A 80.672 119 11 4 2193 2303 521463675 521463561 7.010000e-12 82.4
10 TraesCS7D01G366800 chr1D 98.415 568 8 1 2484 3050 445569876 445569309 0.000000e+00 998.0
11 TraesCS7D01G366800 chr1D 96.831 568 16 2 2484 3050 369902253 369901687 0.000000e+00 948.0
12 TraesCS7D01G366800 chr6D 97.359 568 14 1 2484 3050 446602930 446603497 0.000000e+00 965.0
13 TraesCS7D01G366800 chr2B 96.831 568 17 1 2484 3050 643126837 643126270 0.000000e+00 948.0
14 TraesCS7D01G366800 chr6B 96.491 570 17 3 2484 3050 341760616 341761185 0.000000e+00 939.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7D01G366800 chr7D 474487255 474490304 3049 False 5633.000000 5633 100.000 1 3050 1 chr7D.!!$F1 3049
1 TraesCS7D01G366800 chr7D 621163464 621164031 567 True 992.000000 992 98.239 2484 3050 1 chr7D.!!$R1 566
2 TraesCS7D01G366800 chr7B 498625305 498628194 2889 False 1745.000000 3212 90.194 1 2474 2 chr7B.!!$F2 2473
3 TraesCS7D01G366800 chr7B 457415441 457416009 568 True 950.000000 950 96.837 2484 3050 1 chr7B.!!$R1 566
4 TraesCS7D01G366800 chr7B 494219830 494220397 567 False 937.000000 937 96.479 2484 3050 1 chr7B.!!$F1 566
5 TraesCS7D01G366800 chr7A 638574831 638575396 565 False 939.000000 939 96.643 2486 3050 1 chr7A.!!$F1 564
6 TraesCS7D01G366800 chr7A 521463561 521466669 3108 True 918.466667 1943 85.682 22 2303 3 chr7A.!!$R1 2281
7 TraesCS7D01G366800 chr1D 445569309 445569876 567 True 998.000000 998 98.415 2484 3050 1 chr1D.!!$R2 566
8 TraesCS7D01G366800 chr1D 369901687 369902253 566 True 948.000000 948 96.831 2484 3050 1 chr1D.!!$R1 566
9 TraesCS7D01G366800 chr6D 446602930 446603497 567 False 965.000000 965 97.359 2484 3050 1 chr6D.!!$F1 566
10 TraesCS7D01G366800 chr2B 643126270 643126837 567 True 948.000000 948 96.831 2484 3050 1 chr2B.!!$R1 566
11 TraesCS7D01G366800 chr6B 341760616 341761185 569 False 939.000000 939 96.491 2484 3050 1 chr6B.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 95 0.387367 GATGATCCCCACGACGATCG 60.387 60.0 14.88 14.88 46.93 3.69 F
639 658 0.830648 TAGAAGATGCCCCAGTTCCG 59.169 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1096 1900 0.036858 GTGTGGAAGGAGTGAGGAGC 60.037 60.0 0.0 0.0 0.0 4.70 R
2377 3618 0.036388 TCCTCCGATGTTTGACAGGC 60.036 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 53 1.050988 AGGGATGACGATGGAGGTGG 61.051 60.000 0.00 0.00 0.00 4.61
40 56 0.824109 GATGACGATGGAGGTGGTGA 59.176 55.000 0.00 0.00 0.00 4.02
44 60 1.414181 GACGATGGAGGTGGTGATGAT 59.586 52.381 0.00 0.00 0.00 2.45
50 66 1.492176 GGAGGTGGTGATGATGATGGT 59.508 52.381 0.00 0.00 0.00 3.55
70 86 1.921748 TGTTGGTGATGATGATCCCCA 59.078 47.619 0.00 0.00 34.57 4.96
74 90 1.541233 GGTGATGATGATCCCCACGAC 60.541 57.143 0.00 0.00 0.00 4.34
79 95 0.387367 GATGATCCCCACGACGATCG 60.387 60.000 14.88 14.88 46.93 3.69
82 98 1.731433 GATCCCCACGACGATCGGAA 61.731 60.000 20.98 0.00 45.59 4.30
110 126 4.586001 AGTGATGTTGTTGGCTTCAATTCT 59.414 37.500 0.00 0.00 32.47 2.40
150 166 0.909610 TCCCGACAAATCAGCCCTCT 60.910 55.000 0.00 0.00 0.00 3.69
237 253 6.557568 TGTCAGTTTTAGGGTAAAATGGGAT 58.442 36.000 0.00 0.00 39.56 3.85
244 260 2.311542 AGGGTAAAATGGGATCAGTGCA 59.688 45.455 0.00 0.00 0.00 4.57
424 440 6.573434 AGTTCCAAAAAGTCATTTTCTCCAC 58.427 36.000 0.00 0.00 39.20 4.02
461 478 3.001127 GTGCTTTTCTGCAATTTTTCGCA 59.999 39.130 0.00 0.00 45.12 5.10
481 499 2.424842 AATTGCCCTCCTCCGTTGCA 62.425 55.000 0.00 0.00 0.00 4.08
521 540 9.780413 GAGGAAAAAGAATAAGAATGATGTGAC 57.220 33.333 0.00 0.00 0.00 3.67
543 562 9.320406 GTGACAAATGCAAAACATGAATAATTG 57.680 29.630 0.00 0.00 39.60 2.32
639 658 0.830648 TAGAAGATGCCCCAGTTCCG 59.169 55.000 0.00 0.00 0.00 4.30
640 659 0.909610 AGAAGATGCCCCAGTTCCGA 60.910 55.000 0.00 0.00 0.00 4.55
659 689 2.593026 GAGCTATCTGTAGTCTGCCCT 58.407 52.381 0.00 0.00 0.00 5.19
707 737 4.271807 TCTCCTACTCATGGATGACCTT 57.728 45.455 0.00 0.00 37.04 3.50
866 1669 3.648067 AGTGAGTGAGGAATCCAAGTGAA 59.352 43.478 0.61 0.00 0.00 3.18
1029 1833 2.689034 CCTCCACTCCACCCTCCC 60.689 72.222 0.00 0.00 0.00 4.30
1079 1883 2.582052 AGCATTCCCAACGAAGACAAA 58.418 42.857 0.00 0.00 32.78 2.83
1080 1884 2.293399 AGCATTCCCAACGAAGACAAAC 59.707 45.455 0.00 0.00 32.78 2.93
1096 1900 3.919216 ACAAACAATCCTCTCTCACTCG 58.081 45.455 0.00 0.00 0.00 4.18
1104 1908 0.732571 CTCTCTCACTCGCTCCTCAC 59.267 60.000 0.00 0.00 0.00 3.51
1453 2261 2.445845 TCCTACCCGCCCATCCAG 60.446 66.667 0.00 0.00 0.00 3.86
1904 2717 1.445410 CTTAGCTGCGTACGTGCCA 60.445 57.895 24.05 13.47 0.00 4.92
1906 2719 1.286354 TTAGCTGCGTACGTGCCAAC 61.286 55.000 24.05 8.68 0.00 3.77
1920 2737 1.102978 GCCAACCAAAGCGTCCATAT 58.897 50.000 0.00 0.00 0.00 1.78
1921 2738 2.294074 GCCAACCAAAGCGTCCATATA 58.706 47.619 0.00 0.00 0.00 0.86
1922 2739 2.685897 GCCAACCAAAGCGTCCATATAA 59.314 45.455 0.00 0.00 0.00 0.98
1923 2740 3.243068 GCCAACCAAAGCGTCCATATAAG 60.243 47.826 0.00 0.00 0.00 1.73
1924 2741 3.945285 CCAACCAAAGCGTCCATATAAGT 59.055 43.478 0.00 0.00 0.00 2.24
1925 2742 5.120399 CCAACCAAAGCGTCCATATAAGTA 58.880 41.667 0.00 0.00 0.00 2.24
1926 2743 5.763204 CCAACCAAAGCGTCCATATAAGTAT 59.237 40.000 0.00 0.00 0.00 2.12
1945 2762 7.974730 AAGTATTAGGTGTTAGCTACTTCCT 57.025 36.000 12.44 12.44 36.39 3.36
1956 2773 1.065102 GCTACTTCCTGCATGCATGTG 59.935 52.381 26.79 19.02 0.00 3.21
1976 2796 2.096819 TGTTTCGTTCCAAGTGTGAAGC 59.903 45.455 0.00 0.00 0.00 3.86
1995 2821 0.732880 CGTGAACCTGCTCCAGTACG 60.733 60.000 0.00 0.00 0.00 3.67
2037 2865 6.319405 TGTGCATAGATCAAGCATGTTTGTAT 59.681 34.615 20.01 12.83 40.78 2.29
2097 2929 4.978099 TCTTGGAGCTGTGAGATTTTTCT 58.022 39.130 0.00 0.00 0.00 2.52
2107 2939 8.416329 AGCTGTGAGATTTTTCTGTGTTTAATT 58.584 29.630 0.00 0.00 0.00 1.40
2177 3353 6.465084 AGTAGGTAACAAGATTCACACCTTC 58.535 40.000 0.00 0.00 37.55 3.46
2179 3355 3.435671 GGTAACAAGATTCACACCTTCCG 59.564 47.826 0.00 0.00 0.00 4.30
2189 3365 5.607939 TTCACACCTTCCGATGTATATGT 57.392 39.130 0.00 0.00 0.00 2.29
2190 3366 6.718522 TTCACACCTTCCGATGTATATGTA 57.281 37.500 0.00 0.00 0.00 2.29
2191 3367 6.911250 TCACACCTTCCGATGTATATGTAT 57.089 37.500 0.00 0.00 0.00 2.29
2221 3453 2.486472 AACAAGGATGGCTCTCAGTG 57.514 50.000 0.00 0.00 0.00 3.66
2223 3455 2.194859 ACAAGGATGGCTCTCAGTGAT 58.805 47.619 0.00 0.00 0.00 3.06
2224 3456 2.575279 ACAAGGATGGCTCTCAGTGATT 59.425 45.455 0.00 0.00 0.00 2.57
2225 3457 3.204526 CAAGGATGGCTCTCAGTGATTC 58.795 50.000 0.00 0.00 0.00 2.52
2226 3458 2.475155 AGGATGGCTCTCAGTGATTCA 58.525 47.619 0.00 0.00 0.00 2.57
2229 3461 3.456280 GATGGCTCTCAGTGATTCAGTC 58.544 50.000 0.00 0.00 0.00 3.51
2234 3466 3.119459 GCTCTCAGTGATTCAGTCCGTAA 60.119 47.826 0.00 0.00 0.00 3.18
2318 3559 5.836347 ACTTTCCAGAATTTCTTCAGTTGC 58.164 37.500 0.00 0.00 33.56 4.17
2320 3561 5.695851 TTCCAGAATTTCTTCAGTTGCTC 57.304 39.130 0.00 0.00 33.56 4.26
2321 3562 3.748048 TCCAGAATTTCTTCAGTTGCTCG 59.252 43.478 0.00 0.00 33.56 5.03
2322 3563 3.748048 CCAGAATTTCTTCAGTTGCTCGA 59.252 43.478 0.00 0.00 33.56 4.04
2333 3574 1.542030 AGTTGCTCGATCGTCTTGTCT 59.458 47.619 15.94 5.46 0.00 3.41
2339 3580 0.721718 CGATCGTCTTGTCTTTGGCC 59.278 55.000 7.03 0.00 0.00 5.36
2344 3585 0.954452 GTCTTGTCTTTGGCCACAGG 59.046 55.000 18.76 7.91 0.00 4.00
2351 3592 1.304052 TTTGGCCACAGGGGATTCG 60.304 57.895 3.88 0.00 40.01 3.34
2363 3604 0.942252 GGGATTCGCGTATTGGTTCC 59.058 55.000 5.77 0.00 0.00 3.62
2377 3618 0.318784 GGTTCCGGAGAATCGATCGG 60.319 60.000 16.41 15.17 43.42 4.18
2417 3658 8.632679 GGAGGATATCTGATATCTCAATCTCAC 58.367 40.741 27.79 17.58 41.08 3.51
2420 3661 9.806203 GGATATCTGATATCTCAATCTCACTTG 57.194 37.037 27.79 0.00 41.08 3.16
2432 3673 6.758593 CAATCTCACTTGATTGTGTTTTGG 57.241 37.500 8.55 0.00 44.77 3.28
2434 3675 5.499139 TCTCACTTGATTGTGTTTTGGAC 57.501 39.130 0.00 0.00 38.90 4.02
2435 3676 4.338118 TCTCACTTGATTGTGTTTTGGACC 59.662 41.667 0.00 0.00 38.90 4.46
2440 3681 5.067283 ACTTGATTGTGTTTTGGACCAGTAC 59.933 40.000 0.00 0.00 0.00 2.73
2461 3702 4.207891 CAGTACACTGCTTACCTTCCAT 57.792 45.455 0.00 0.00 37.15 3.41
2474 3715 4.881019 ACCTTCCATTGAGATCGATAGG 57.119 45.455 0.00 0.13 0.00 2.57
2475 3716 3.580458 ACCTTCCATTGAGATCGATAGGG 59.420 47.826 0.00 0.00 0.00 3.53
2476 3717 3.055530 CCTTCCATTGAGATCGATAGGGG 60.056 52.174 0.00 0.00 0.00 4.79
2477 3718 3.542969 TCCATTGAGATCGATAGGGGA 57.457 47.619 0.00 0.00 0.00 4.81
2478 3719 4.066578 TCCATTGAGATCGATAGGGGAT 57.933 45.455 0.00 0.00 0.00 3.85
2479 3720 5.206905 TCCATTGAGATCGATAGGGGATA 57.793 43.478 0.00 0.00 0.00 2.59
2480 3721 5.204292 TCCATTGAGATCGATAGGGGATAG 58.796 45.833 0.00 0.00 0.00 2.08
2481 3722 4.343526 CCATTGAGATCGATAGGGGATAGG 59.656 50.000 0.00 0.00 0.00 2.57
2482 3723 4.948062 TTGAGATCGATAGGGGATAGGA 57.052 45.455 0.00 0.00 0.00 2.94
2483 3724 4.511786 TGAGATCGATAGGGGATAGGAG 57.488 50.000 0.00 0.00 0.00 3.69
2484 3725 3.203263 TGAGATCGATAGGGGATAGGAGG 59.797 52.174 0.00 0.00 0.00 4.30
2531 3772 1.745087 CCCGCATTGCATACACTTCTT 59.255 47.619 9.69 0.00 0.00 2.52
2534 3775 3.065786 CCGCATTGCATACACTTCTTCAT 59.934 43.478 9.69 0.00 0.00 2.57
2667 3910 3.149196 CTGCATGTTAGTCCACAAACCT 58.851 45.455 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 53 3.346315 TCACCAACACCATCATCATCAC 58.654 45.455 0.00 0.00 0.00 3.06
40 56 4.239428 TCATCACCAACACCATCATCAT 57.761 40.909 0.00 0.00 0.00 2.45
44 60 3.717452 TCATCATCACCAACACCATCA 57.283 42.857 0.00 0.00 0.00 3.07
70 86 2.421073 TCACTAACATTCCGATCGTCGT 59.579 45.455 15.09 2.26 38.40 4.34
74 90 4.566759 ACAACATCACTAACATTCCGATCG 59.433 41.667 8.51 8.51 0.00 3.69
79 95 4.218417 AGCCAACAACATCACTAACATTCC 59.782 41.667 0.00 0.00 0.00 3.01
82 98 4.826733 TGAAGCCAACAACATCACTAACAT 59.173 37.500 0.00 0.00 0.00 2.71
110 126 1.001248 CTTCCTCTACCGGTGGGGA 59.999 63.158 21.18 20.21 39.97 4.81
150 166 0.772124 AGGTGAGCTTTTCTCCCCCA 60.772 55.000 0.00 0.00 39.84 4.96
193 209 9.838339 ACTGACAGAAATAATTATCGAGGATTT 57.162 29.630 10.08 0.00 0.00 2.17
244 260 1.341285 TGCCTCTAATGTTGCATGGCT 60.341 47.619 0.00 0.00 39.57 4.75
397 413 6.451064 AGAAAATGACTTTTTGGAACTCGT 57.549 33.333 3.95 0.00 37.65 4.18
424 440 3.317603 AAGCACCAAAATGAAATCCGG 57.682 42.857 0.00 0.00 0.00 5.14
461 478 1.250840 GCAACGGAGGAGGGCAATTT 61.251 55.000 0.00 0.00 0.00 1.82
481 499 9.783081 ATTCTTTTTCCTCTTAATTTGCATGTT 57.217 25.926 0.00 0.00 0.00 2.71
521 540 9.536558 CTCACAATTATTCATGTTTTGCATTTG 57.463 29.630 0.00 0.00 35.19 2.32
639 658 2.556622 GAGGGCAGACTACAGATAGCTC 59.443 54.545 0.00 0.00 30.75 4.09
640 659 2.176798 AGAGGGCAGACTACAGATAGCT 59.823 50.000 0.00 0.00 30.75 3.32
659 689 2.357009 GTCGCGAGGGTTCATACTAAGA 59.643 50.000 10.24 0.00 0.00 2.10
790 1593 1.402107 GCACCCCAATAGGCCAATGG 61.402 60.000 5.01 10.19 0.00 3.16
1029 1833 1.276989 TGGGGTTTTAGCACGAGTAGG 59.723 52.381 0.00 0.00 0.00 3.18
1079 1883 1.748493 GAGCGAGTGAGAGAGGATTGT 59.252 52.381 0.00 0.00 0.00 2.71
1080 1884 1.066908 GGAGCGAGTGAGAGAGGATTG 59.933 57.143 0.00 0.00 0.00 2.67
1096 1900 0.036858 GTGTGGAAGGAGTGAGGAGC 60.037 60.000 0.00 0.00 0.00 4.70
1104 1908 0.668706 CGCTGTCTGTGTGGAAGGAG 60.669 60.000 0.00 0.00 0.00 3.69
1895 2708 1.082366 CGCTTTGGTTGGCACGTAC 60.082 57.895 0.00 0.00 0.00 3.67
1904 2717 7.660208 CCTAATACTTATATGGACGCTTTGGTT 59.340 37.037 0.00 0.00 0.00 3.67
1906 2719 7.117812 CACCTAATACTTATATGGACGCTTTGG 59.882 40.741 0.00 0.00 0.00 3.28
1920 2737 8.910944 CAGGAAGTAGCTAACACCTAATACTTA 58.089 37.037 11.72 0.00 36.05 2.24
1921 2738 7.633116 GCAGGAAGTAGCTAACACCTAATACTT 60.633 40.741 11.72 2.89 36.05 2.24
1922 2739 6.183360 GCAGGAAGTAGCTAACACCTAATACT 60.183 42.308 11.72 0.00 36.05 2.12
1923 2740 5.984323 GCAGGAAGTAGCTAACACCTAATAC 59.016 44.000 11.72 0.00 36.05 1.89
1924 2741 5.659525 TGCAGGAAGTAGCTAACACCTAATA 59.340 40.000 11.72 2.37 36.05 0.98
1925 2742 4.469945 TGCAGGAAGTAGCTAACACCTAAT 59.530 41.667 11.72 0.00 36.05 1.73
1926 2743 3.835978 TGCAGGAAGTAGCTAACACCTAA 59.164 43.478 11.72 3.87 36.05 2.69
1945 2762 1.335780 GGAACGAAACACATGCATGCA 60.336 47.619 26.53 25.04 0.00 3.96
1956 2773 2.716398 GCTTCACACTTGGAACGAAAC 58.284 47.619 0.00 0.00 0.00 2.78
1976 2796 0.732880 CGTACTGGAGCAGGTTCACG 60.733 60.000 0.00 0.00 35.51 4.35
1995 2821 9.045223 TCTATGCACAAGATCACAAACATATAC 57.955 33.333 0.00 0.00 0.00 1.47
2057 2885 8.035984 GCTCCAAGAAACTTATTAGAGTACTGT 58.964 37.037 0.00 0.00 0.00 3.55
2059 2887 8.254508 CAGCTCCAAGAAACTTATTAGAGTACT 58.745 37.037 0.00 0.00 0.00 2.73
2060 2888 8.035984 ACAGCTCCAAGAAACTTATTAGAGTAC 58.964 37.037 0.00 0.00 0.00 2.73
2061 2889 8.035394 CACAGCTCCAAGAAACTTATTAGAGTA 58.965 37.037 0.00 0.00 0.00 2.59
2150 2987 5.811100 GGTGTGAATCTTGTTACCTACTAGC 59.189 44.000 0.00 0.00 30.81 3.42
2177 3353 8.574196 TTGCATTCGATATACATATACATCGG 57.426 34.615 0.00 0.00 33.02 4.18
2189 3365 5.048782 GCCATCCTTGTTTGCATTCGATATA 60.049 40.000 0.00 0.00 0.00 0.86
2190 3366 4.261741 GCCATCCTTGTTTGCATTCGATAT 60.262 41.667 0.00 0.00 0.00 1.63
2191 3367 3.066621 GCCATCCTTGTTTGCATTCGATA 59.933 43.478 0.00 0.00 0.00 2.92
2199 3425 1.471684 CTGAGAGCCATCCTTGTTTGC 59.528 52.381 0.00 0.00 0.00 3.68
2226 3458 3.613030 ACAACAAAACCAGTTACGGACT 58.387 40.909 0.75 0.00 39.89 3.85
2229 3461 2.352342 ACGACAACAAAACCAGTTACGG 59.648 45.455 0.00 0.00 34.63 4.02
2234 3466 2.349275 CGTGTACGACAACAAAACCAGT 59.651 45.455 0.00 0.00 43.02 4.00
2238 3470 2.594958 CCGACGTGTACGACAACAAAAC 60.595 50.000 11.79 0.00 43.02 2.43
2318 3559 1.656095 GCCAAAGACAAGACGATCGAG 59.344 52.381 24.34 10.81 0.00 4.04
2320 3561 0.721718 GGCCAAAGACAAGACGATCG 59.278 55.000 14.88 14.88 0.00 3.69
2321 3562 1.464997 GTGGCCAAAGACAAGACGATC 59.535 52.381 7.24 0.00 0.00 3.69
2322 3563 1.202758 TGTGGCCAAAGACAAGACGAT 60.203 47.619 7.24 0.00 0.00 3.73
2333 3574 1.304052 CGAATCCCCTGTGGCCAAA 60.304 57.895 7.24 0.00 0.00 3.28
2339 3580 0.937304 CAATACGCGAATCCCCTGTG 59.063 55.000 15.93 0.00 0.00 3.66
2344 3585 0.942252 GGAACCAATACGCGAATCCC 59.058 55.000 15.93 0.00 0.00 3.85
2351 3592 1.865340 GATTCTCCGGAACCAATACGC 59.135 52.381 5.23 0.00 33.96 4.42
2363 3604 1.372251 CAGGCCGATCGATTCTCCG 60.372 63.158 18.66 0.00 0.00 4.63
2377 3618 0.036388 TCCTCCGATGTTTGACAGGC 60.036 55.000 0.00 0.00 0.00 4.85
2417 3658 4.654091 ACTGGTCCAAAACACAATCAAG 57.346 40.909 0.00 0.00 0.00 3.02
2420 3661 4.578928 ACTGTACTGGTCCAAAACACAATC 59.421 41.667 4.66 0.00 0.00 2.67
2426 3667 4.510340 CAGTGTACTGTACTGGTCCAAAAC 59.490 45.833 17.98 5.54 41.36 2.43
2429 3670 2.036733 GCAGTGTACTGTACTGGTCCAA 59.963 50.000 17.98 0.00 44.36 3.53
2430 3671 1.616865 GCAGTGTACTGTACTGGTCCA 59.383 52.381 17.98 0.00 44.36 4.02
2431 3672 2.365408 GCAGTGTACTGTACTGGTCC 57.635 55.000 17.98 2.71 44.36 4.46
2434 3675 3.510360 AGGTAAGCAGTGTACTGTACTGG 59.490 47.826 17.98 9.02 44.36 4.00
2435 3676 4.785511 AGGTAAGCAGTGTACTGTACTG 57.214 45.455 17.98 12.09 46.37 2.74
2440 3681 3.678056 TGGAAGGTAAGCAGTGTACTG 57.322 47.619 7.64 7.64 46.40 2.74
2454 3695 3.055530 CCCCTATCGATCTCAATGGAAGG 60.056 52.174 0.00 0.00 0.00 3.46
2461 3702 4.325422 CCTCCTATCCCCTATCGATCTCAA 60.325 50.000 0.00 0.00 0.00 3.02
2474 3715 0.919710 ACCAAACAGCCTCCTATCCC 59.080 55.000 0.00 0.00 0.00 3.85
2475 3716 2.369394 CAACCAAACAGCCTCCTATCC 58.631 52.381 0.00 0.00 0.00 2.59
2476 3717 1.745653 GCAACCAAACAGCCTCCTATC 59.254 52.381 0.00 0.00 0.00 2.08
2477 3718 1.616994 GGCAACCAAACAGCCTCCTAT 60.617 52.381 0.00 0.00 44.92 2.57
2478 3719 0.251165 GGCAACCAAACAGCCTCCTA 60.251 55.000 0.00 0.00 44.92 2.94
2479 3720 1.531602 GGCAACCAAACAGCCTCCT 60.532 57.895 0.00 0.00 44.92 3.69
2480 3721 2.919494 CGGCAACCAAACAGCCTCC 61.919 63.158 0.00 0.00 46.14 4.30
2481 3722 2.193536 ACGGCAACCAAACAGCCTC 61.194 57.895 0.00 0.00 46.14 4.70
2482 3723 2.123897 ACGGCAACCAAACAGCCT 60.124 55.556 0.00 0.00 46.14 4.58
2483 3724 2.027460 CACGGCAACCAAACAGCC 59.973 61.111 0.00 0.00 44.89 4.85
2484 3725 2.658268 GCACGGCAACCAAACAGC 60.658 61.111 0.00 0.00 0.00 4.40
2531 3772 0.918258 TGCATAGCCAGGTTGGATGA 59.082 50.000 0.00 0.00 40.96 2.92
2534 3775 2.101783 CATTTGCATAGCCAGGTTGGA 58.898 47.619 0.00 0.00 40.96 3.53
2667 3910 2.672098 ACAACCAAACACCATGCCTTA 58.328 42.857 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.